BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] (67 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 67 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI Sbjct: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 Query: 61 TQKDKKN 67 TQKDKKN Sbjct: 61 TQKDKKN 67 >gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 328 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 64/71 (90%), Positives = 65/71 (91%), Gaps = 4/71 (5%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56 +STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK MMEIYDQT Sbjct: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 Query: 57 HPSITQKDKKN 67 HPSITQKDKKN Sbjct: 318 HPSITQKDKKN 328 >gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 324 Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 42/56 (75%), Positives = 53/56 (94%) Query: 11 SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66 SFATH+LSNGGDLRSIQS+LGH+RLS+TQ+YTNV+SKR++EIYDQ+HP +T +KK Sbjct: 265 SFATHILSNGGDLRSIQSVLGHARLSSTQVYTNVDSKRIIEIYDQSHPIVTNNNKK 320 >gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 330 Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 328 >gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti 1021] gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021] gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 330 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 328 >gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC Length = 318 Score = 92.8 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 316 >gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum USDA 110] gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGHS LSTTQIYT ++S+R++E+Y HP Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSERLLEVYASAHP 319 >gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] Length = 304 Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTARLMEVYDRTHP 302 >gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis X14] gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14] Length = 300 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y HP Sbjct: 242 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYKTAHP 298 >gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein [polymorphum gilvum SL003B-26A1] gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 316 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++E YD+ HP Sbjct: 258 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVDTARLLEAYDKAHP 314 >gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A] gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A] Length = 322 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y HP Sbjct: 264 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYRTAHP 320 >gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2] gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2] Length = 307 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP Sbjct: 249 SATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQRLMEVYDKAHP 305 >gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii NGR234] gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234] Length = 310 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 252 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 308 >gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1] gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 323 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 321 >gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris TIE-1] gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 323 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 321 >gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae WSM419] gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 313 Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHP 311 >gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5] Length = 198 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 140 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 196 >gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] Length = 327 Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y HP Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHP 325 >gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] Length = 307 Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP Sbjct: 249 TATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHP 305 >gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 312 Score = 90.1 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+Q HP Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYEQAHP 310 >gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris HaA2] gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2] Length = 351 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R++E+Y HP Sbjct: 293 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDTERLLEVYASAHP 349 >gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33] Length = 309 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 251 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 307 >gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris CGA009] gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC) [Rhodopseudomonas palustris CGA009] Length = 371 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 313 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 369 >gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1] gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33] gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33] Length = 308 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 250 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 306 >gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] Length = 316 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V + R++EIYD+ HP Sbjct: 258 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVETSRLLEIYDRAHP 314 >gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB5] gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB5] Length = 329 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 271 SATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHP 327 >gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330] gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1 str. 9-941] gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar Abortus 2308] gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19] gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6 str. 870] gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3 str. Tulya] gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2 str. 86/8/59] gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str. 513] gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str. 686] gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M163/99/10] gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis B2/94] gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1] gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4 str. 292] gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M292/94/1] gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3 str. Ether] gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1] gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94] gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9 str. C68] gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99] gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330] gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19] gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28] gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90] Length = 315 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 313 >gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] Length = 355 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y HP Sbjct: 297 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHP 353 >gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] Length = 306 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMEVYDRTHP 304 >gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi Nb-255] gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255] Length = 321 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++++Y HP Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLDVYRTAHP 319 >gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445] gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445] Length = 315 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 313 >gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. 16M] gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. Rev.1] gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] Length = 315 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 313 >gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] Length = 317 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 259 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHP 315 >gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1] gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1] Length = 324 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y HP Sbjct: 266 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHP 322 >gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278] gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp. ORS278] Length = 327 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y HP Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHP 325 >gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840] gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840] Length = 315 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQRLLEVYDKTHP 313 >gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] Length = 319 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/57 (68%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT VNS ++++ YD+ HP Sbjct: 261 TATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEVNSAQLLDAYDKAHP 317 >gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisA53] gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisA53] Length = 342 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R++E+Y HP Sbjct: 284 SATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSERLLEVYATAHP 340 >gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3] Length = 210 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 152 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 208 >gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] Length = 310 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 50/62 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLLS GGDLRSIQ +LGH+ LSTTQ+YT V++ R+ME+Y+ +HP Sbjct: 249 TATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTARLMEVYEASHPRAA 308 Query: 62 QK 63 ++ Sbjct: 309 RR 310 >gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB18] gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB18] Length = 324 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R+ E+Y HP Sbjct: 266 SATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSERLFEVYKTAHP 322 >gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides WS8N] gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides WS8N] Length = 306 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHP 304 >gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1] gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1] Length = 313 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIY+ HP Sbjct: 255 TATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSRLLEIYENAHP 311 >gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] Length = 306 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP Sbjct: 248 TATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHP 304 >gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42] gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 311 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309 >gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2] gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2] Length = 329 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 40/57 (70%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT V+S R++E Y HP Sbjct: 270 SATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSARLIEAYRSAHP 326 >gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHP 313 >gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13] gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653] gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653] Length = 315 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKAHP 313 >gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str. Toulouse] gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse] Length = 322 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H+LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++ R++EIY + HP Sbjct: 264 TATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDRLLEIYQKAHP 320 >gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens str. C58] gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 315 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIYD HP Sbjct: 257 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHP 313 >gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str. Houston-1] gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1] Length = 326 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 38/57 (66%), Positives = 49/57 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT+V++K ++EIY + HP Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKHLLEIYQKAHP 320 >gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] Length = 315 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHP 313 >gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] Length = 322 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT V+S R++++YD+ HP Sbjct: 264 TATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYTGVDSARLLDVYDRAHP 320 >gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 311 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309 >gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides KD131] gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 306 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHP 304 >gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] Length = 311 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIYD HP Sbjct: 253 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYDNAHP 309 >gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides 2.4.1] gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17029] gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1] gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 306 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHP 304 >gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] Length = 311 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDQSRLLEVYDRAHP 309 >gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT 652] gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 311 Score = 87.4 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309 >gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti MAFF303099] gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC [Mesorhizobium loti MAFF303099] Length = 312 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+ HP Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYESAHP 310 >gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083] gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083] Length = 306 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLLS GGDLRSIQ +LGHS LSTTQ YT V++ R+ME+Y++ HP Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTARLMEVYERAHP 304 >gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894] Length = 248 Score = 87.0 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 190 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 246 >gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17025] gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 306 Score = 87.0 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVDGARLMEVYARAHP 304 >gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] Length = 312 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+ HP Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTTRLLEIYESAHP 310 >gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] Length = 307 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 38/57 (66%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ +M+IYD+ HP Sbjct: 246 SATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAHLMQIYDRAHP 302 >gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1] gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] Length = 296 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296 >gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] Length = 297 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297 >gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] Length = 296 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296 >gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] Length = 315 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHP 309 >gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] Length = 297 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297 >gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] Length = 296 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296 >gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] Length = 295 Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 37/55 (67%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ E+YD+ HP Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKNRLKEVYDKAHP 293 >gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] Length = 306 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++YD+THP Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMKVYDRTHP 304 >gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36] gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36] Length = 315 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHP 309 >gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] Length = 299 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 37/57 (64%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K ++E+Y +THP Sbjct: 241 DVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKHILEVYIETHP 297 >gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654] gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654] Length = 313 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP Sbjct: 251 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTQRLMEVYDRAHP 307 >gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] Length = 179 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 179 >gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 298 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLR++Q LGHS LSTTQIYT+V ++R+ ++YD+THP Sbjct: 239 LRVSPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHP 296 >gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10] Length = 311 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY +V S R++ IYD THP Sbjct: 250 TATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESARLLSIYDGTHP 306 >gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] Length = 296 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294 >gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294 >gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] Length = 296 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294 >gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] Length = 296 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 294 >gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] Length = 302 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 300 >gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC 33323] gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] Length = 302 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 300 >gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] Length = 302 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHP 300 >gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 323 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+S+R++E Y HP Sbjct: 264 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSERLLEAYRSAHP 320 >gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] Length = 306 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++THP Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRTHP 304 >gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] Length = 301 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301 >gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. viciae 3841] gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 241 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 297 >gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1] gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1] Length = 301 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301 >gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 301 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/59 (61%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 243 DVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10] gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] Length = 304 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSRLMEVYRKAHP 302 >gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 336 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V+ KR+++ Y HP Sbjct: 277 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTAVDKKRLLDAYRSAHP 333 >gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGHS +STTQIYT+++ KR+ +IYD++HP Sbjct: 242 NVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKRLSKIYDESHP 298 >gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 303 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 246 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 303 >gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498] Length = 321 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++ ++EIY + HP Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHP 319 >gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] Length = 307 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 45/58 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M T H +RHS+ATHLL NG DLR +Q +LGH++LSTTQIYT+VN R+ E +DQ HP Sbjct: 248 MDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGRLKEAFDQAHP 305 >gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3] Length = 321 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++ ++EIY + HP Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHP 319 >gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHP 309 >gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] Length = 314 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y+ HP Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNNAHP 310 >gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] Length = 301 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] Length = 314 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 47/60 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP T Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKAT 313 >gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM 4136] Length = 318 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 37/58 (63%), Positives = 48/58 (82%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+NG DLRS+Q++LGH+ LSTTQIYT+V ++RM E+Y+ HP Sbjct: 259 VQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTERMKEVYEDAHP 316 >gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] Length = 322 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ ++EIY + HP Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNYLLEIYQKAHP 320 >gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C] Length = 321 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ ++EIY + HP Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNHLLEIYQKAHP 319 >gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] Length = 301 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD HP Sbjct: 241 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTARLMEVYDAAHP 297 >gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 339 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQIY V+ +R++E Y HP Sbjct: 274 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQRLLEAYRSAHP 330 >gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] Length = 328 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 47/55 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLLSNG DLR++Q +LGH+ +STTQIYT++ R+ E+YD++HP Sbjct: 260 TPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLTMGRLREVYDRSHP 314 >gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 319 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+M++YD HP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTARLMKVYDAAHP 302 >gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1] Length = 332 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/61 (59%), Positives = 51/61 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ R++E+Y + HP + Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTDRLLEVYQKAHPRAS 323 Query: 62 Q 62 + Sbjct: 324 K 324 >gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773] Length = 298 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 35/56 (62%), Positives = 46/56 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YDQ HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDQYHP 296 >gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217] gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217] Length = 306 Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y +THP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARTHP 302 >gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] Length = 340 Score = 84.7 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 48/55 (87%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLRS+Q +LGH++LSTTQIYT+V+++R+ EIY +THP Sbjct: 284 SPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHP 338 >gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] Length = 308 Score = 84.7 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 38/60 (63%), Positives = 48/60 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+V+ R+ ++YDQTHP QK K Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDFDRLAQVYDQTHPRAQQKVK 307 >gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 327 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ+YT V+ R++ +YDQ HP Sbjct: 266 TATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDRDRLLSVYDQAHP 322 >gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12] gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12] Length = 308 Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++E+Y+ HP Sbjct: 250 SATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATRLLEVYNAAHP 306 >gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Ikeda] gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 36/65 (55%), Positives = 50/65 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S TAHT RH FA+HLL+NG DLRSIQ +LGH LS+TQIYT +NS + +Y+++HP + Sbjct: 247 SLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306 Query: 62 QKDKK 66 +++ K Sbjct: 307 EQNNK 311 >gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] Length = 300 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP Sbjct: 244 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHP 298 >gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367] gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367] Length = 298 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 47/56 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATH+L NG DLR +Q +LGH+ ++TTQIYT+++ KR++++YDQ HP Sbjct: 241 VTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKRLVKVYDQYHP 296 >gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 294 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/55 (67%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ E+Y +THP Sbjct: 238 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKGRLKEVYARTHP 292 >gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] Length = 300 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP Sbjct: 244 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHP 298 >gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup] gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup] Length = 322 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 37/57 (64%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++ +++IY + HP Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDHLLKIYQKAHP 320 >gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1] gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1] Length = 307 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y HP Sbjct: 249 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYANAHP 305 >gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 313 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 38/64 (59%), Positives = 51/64 (79%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ HTLRH+FATHLL G DLRS+Q +LGH L+TTQIYT+V++KR++E Y++ HP Q Sbjct: 251 TSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPH-AQ 309 Query: 63 KDKK 66 + KK Sbjct: 310 RSKK 313 >gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] Length = 299 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQ+YT++ R+ E+YD+THP Sbjct: 243 TPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHITRTRIKEVYDKTHP 297 >gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 319 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++ +YD HP Sbjct: 254 SATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVDADRLLSVYDNAHPRAR 313 Query: 62 QK 63 +K Sbjct: 314 RK 315 >gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 298 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298 >gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] Length = 307 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L+TTQ+YT V+ R+M++Y HP Sbjct: 249 TATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQARLMQVYQAAHP 305 >gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 301 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301 >gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 298 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298 >gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301 >gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 301 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301 >gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++ HP Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRAHP 304 >gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP 105476] gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476] Length = 322 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 37/57 (64%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT+V++ ++EIY + HP Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDTDHLLEIYQKAHP 320 >gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] Length = 327 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GG+LR+IQ +LGH+ LSTTQ+YT V++ R+M+ Y HP Sbjct: 269 SATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATRLMDAYRAAHP 325 >gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 298 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 38/55 (69%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS LSTTQ YT V +M E+YD THP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVTKTKMKEVYDLTHP 294 >gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] Length = 317 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 38/66 (57%), Positives = 50/66 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRH+FATH+L G DLRSIQ +LGHS LSTTQ YT+V R++E+YD+ HP Sbjct: 248 SISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLEVYDKAHPRAR 307 Query: 62 QKDKKN 67 + D++N Sbjct: 308 ETDQQN 313 >gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] Length = 295 Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT RHSFATHLL NG DLR +Q ILGHS +STTQIYT++ ++ E+YD THP Sbjct: 239 TPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHITRNKIKEVYDNTHP 293 >gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] Length = 306 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARAHP 302 >gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] Length = 307 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ G DLRSIQ +LGH+ LSTTQ YT+V+S R++E + + HP Sbjct: 248 SATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSARLLETWQKAHP 304 >gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] Length = 318 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL G DLRS+Q +LGH LSTTQIYT++++ R+++ YDQ HP Sbjct: 260 TPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQAHP 314 >gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 297 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 46/56 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP Sbjct: 240 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHP 295 >gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 298 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 46/56 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHP 296 >gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] Length = 306 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHL++ GGDLR IQ +LGH+ LSTTQ YT V++ ++M +YD+ HP Sbjct: 248 TATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQLMAVYDRAHP 304 >gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis KC583] gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583] Length = 322 Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLLS GG+LR IQ +LGH+ LSTTQ+YT ++S R+++IY + HP Sbjct: 264 TATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDSDRLLDIYQKAHP 320 >gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] Length = 300 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP Sbjct: 244 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYLKTHP 298 >gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] Length = 299 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH+FATHLL+NG DLR+IQ++LGH+ LSTTQ+YT ++S R+ E++ HP Sbjct: 241 TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHP 297 >gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] Length = 300 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 47/56 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATH+L+NG DL+++Q +LGHS LSTTQIYT+V +R+ E+YD+T P Sbjct: 240 VSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTKERLKEVYDKTFP 295 >gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 305 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP Sbjct: 247 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHP 303 >gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11] gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11] Length = 305 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +ME+Y++ HP Sbjct: 247 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYNRAHP 303 >gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] Length = 297 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y+Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHP 295 >gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2] gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2] Length = 296 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294 >gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM] gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM] Length = 305 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++EIY HP Sbjct: 247 SATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTARLLEIYRAAHP 303 >gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] Length = 297 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y+Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHP 295 >gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP Sbjct: 238 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHP 294 >gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 298 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 46/56 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHP 296 >gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20] gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20] Length = 296 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294 >gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] Length = 296 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +R++++YD+ HP Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHP 294 >gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] Length = 296 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294 >gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +R++++YD+ HP Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHP 293 >gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30] gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10] Length = 296 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFP 294 >gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] Length = 295 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +R++++YD+ HP Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHP 293 >gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] Length = 294 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/60 (58%), Positives = 47/60 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH+FATH+L G DLR+IQ +LGH+ LSTTQ YT+V+ R+ME+YD+ HP +K Sbjct: 235 SPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSIDRLMEVYDKAHPKARKK 294 >gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294 >gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 312 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 49/64 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRHSFA+H+L G DLRS+Q +LGHSR+STTQ YT+++ ++M +YD HP Sbjct: 245 SISPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAA 304 Query: 62 QKDK 65 +KD+ Sbjct: 305 KKDE 308 >gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46] gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46] Length = 320 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GDLR+IQ +LGH+ L+TTQIYT V+S R+M ++ HP Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSARLMSAFEAAHP 315 >gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294 >gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3] gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294 >gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 49/65 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T HT RH FA+HLL+NG DLRSIQ +LGH LS+TQIYT +NS + +Y+++HP + Sbjct: 247 SLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306 Query: 62 QKDKK 66 +++ K Sbjct: 307 EQNNK 311 >gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294 >gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621] gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294 >gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] Length = 319 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S ++ YD+ HP Sbjct: 261 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHP 317 >gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 295 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 37/55 (67%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ + TTQIYT++ K++ EIYD THP Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHP 293 >gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 36/54 (66%), Positives = 46/54 (85%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V++ R++E+YD+ Sbjct: 268 SATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAARLLEVYDK 321 >gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 294 >gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 296 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ R+ E+Y Q HP Sbjct: 238 EVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHP 294 >gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] Length = 341 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 STT H LRHSFATHLL G DLR+IQ +LGH+ LSTTQ YT+V+++ ++ +Y+ HP Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEHLLSVYETAHP 313 >gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 238 TVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQYFP 294 >gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 295 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 37/55 (67%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ +IY +THP Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTRIKDIYAKTHP 293 >gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/56 (62%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RHSFATHLL NG DLR +Q +LGHS ++TTQIYT+V+ KR++ +Y THP Sbjct: 239 VTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQKRLLTVYKNTHP 294 >gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GDLR+IQ +LGH+ L+TTQ+YT V+S R++ +D HP Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSARLLSAFDAAHP 315 >gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4] gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 294 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/56 (62%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATH+L G DLR+IQ +LGHS LSTTQ YT+V+ R+ME+YD+ HP Sbjct: 235 VSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVSIDRLMEVYDKAHP 290 >gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040] gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040] Length = 311 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +ME+Y + HP Sbjct: 253 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARAHP 309 >gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames] gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne] gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. Al Hakam] gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNEVA-9066] gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A1055] gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Western North America USA6153] gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kruger B] gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vollum] gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Australia 94] gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI] gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames] gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne] gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al Hakam] gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W] gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L] gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L] gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] Length = 298 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDAFHP 296 >gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98] Length = 296 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987] gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187] gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987] gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187] gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2] gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2] Length = 304 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ +M +Y++ HP Sbjct: 246 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAHLMSVYEKAHP 302 >gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70] gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70] Length = 299 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQYHP 297 >gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] Length = 299 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHP 297 >gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y++ HP Sbjct: 244 DVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYEKAHP 300 >gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1] gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1] Length = 285 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 229 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 283 >gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] Length = 299 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHP 297 >gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 319 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 45/53 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT+++ R+M++YDQ HP Sbjct: 260 HMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLDLARLMQVYDQAHP 312 >gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208] Length = 75 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 19 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 73 >gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A] Length = 302 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 246 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 300 >gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens TA208] gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQYHP 294 >gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 14579] gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264] gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264] gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar chinensis CT-43] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803] gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] Length = 306 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y+++HP Sbjct: 248 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRSHP 304 >gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S] gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067] gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262] gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262] gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378] gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e] gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 1988] gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561] gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161] gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e] gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 331 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT++ R+M++YD+ HP + Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLELARIMQVYDKAHPRSDE 320 Query: 63 KD 64 D Sbjct: 321 AD 322 >gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] Length = 296 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 294 >gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816] gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596] gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596] Length = 73 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 17 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 71 >gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] Length = 297 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHP 295 >gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] Length = 311 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHP 309 >gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 298 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT+V++ +++IY HP Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAHLLDIYRNAHP 296 >gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] Length = 298 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDNFHP 296 >gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] Length = 301 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/63 (55%), Positives = 50/63 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL NG DLRS+Q++LGH +STTQIYT+++ R+ ++Y++THP + Sbjct: 239 VSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKE 298 Query: 63 KDK 65 +K Sbjct: 299 NNK 301 >gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] Length = 319 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 37/57 (64%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+ R+M IY+ HP Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQARLMSIYEDAHP 311 >gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR] gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR] Length = 295 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ ++TTQIYT++ R+ E+Y +THP Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLTRGRLREVYSKTHP 293 >gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] Length = 296 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHP 294 >gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus WK1] gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 244 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 298 >gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 295 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQIYT++ +R+ ++Y ++HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQRLKDVYSKSHP 293 >gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 295 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++ R+ ++Y++THP Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNRLRDVYNRTHP 293 >gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 298 Score = 82.0 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 240 SATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVDAARLLDVYRSAHP 296 >gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 295 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V RM ++Y Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYAQYHP 293 >gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733] gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12] gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733] gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12] gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] Length = 295 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 293 >gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. JH642] gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. SMY] gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] Length = 296 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294 >gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 311 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHP 309 >gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] Length = 284 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 226 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 282 >gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. natto BEST195] Length = 296 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294 >gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15] gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980] gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15] gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980] Length = 295 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 293 >gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] Length = 300 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 298 >gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] Length = 296 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++ R+ E+Y +HP Sbjct: 240 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTRLKEVYKNSHP 294 >gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] Length = 306 Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y + HP Sbjct: 248 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTHLMDVYMRAHP 304 >gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSQYHP 295 >gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens FZB42] gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHP 294 >gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410] gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO] gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68] gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6] gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162] gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410] gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68] gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6] gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162] Length = 295 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 293 >gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 290 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/56 (62%), Positives = 48/56 (85%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++ +++ +I+ QTHP Sbjct: 233 VSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLSREKIKDIHQQTHP 288 >gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] Length = 295 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 47/55 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +S+TQ+YT++++K++ E+Y THP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQIREVYKNTHP 293 >gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 297 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V RM ++Y + HP Sbjct: 241 SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHP 295 >gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] Length = 300 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 298 >gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] Length = 309 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+++++ M +IY+Q HP Sbjct: 253 SPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIHAQHMKDIYNQNHP 307 >gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL G DLRS+Q +LGH LSTTQIYT+V+++RM E+Y + HP Sbjct: 257 TPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMKEVYKEAHP 311 >gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313] Length = 294 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + R+ EIY +THP Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHP 292 >gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] Length = 299 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/57 (63%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++ KRM +Y HP Sbjct: 241 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKRMSSVYKTYHP 297 >gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis] Length = 163 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 107 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 161 >gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 295 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/56 (64%), Positives = 46/56 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+LRHSFATH+L+NG DLRS+Q +LGH LS TQ+YT+V+ R+ +IY QTHP Sbjct: 236 VTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHP 291 >gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] Length = 296 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + R+ EIY +THP Sbjct: 240 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHP 294 >gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] Length = 297 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L G DLR IQ ILGH+ LS+TQIYT+V R+ME+YD+ HP Sbjct: 241 SPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHP 295 >gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] Length = 294 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP Sbjct: 236 EVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNERMKEIYKQAHP 292 >gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] Length = 311 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +ME+Y ++HP Sbjct: 253 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARSHP 309 >gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 317 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FATHLL G DLR++Q +LGH+RLSTTQIYT V++ R++E+Y + HP Sbjct: 258 HLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADRLLEVYRRAHP 310 >gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] Length = 308 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+ +M++Y+ +HP Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVHLMKVYEASHP 305 >gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408] gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408] Length = 223 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 165 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFP 221 >gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601] gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601] Length = 308 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT+V+ +M++Y THP Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVHLMKVYAATHP 305 >gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] Length = 300 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++ R+ E+Y Q HP Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHP 298 >gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis m4-4] Length = 297 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ E+Y + HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKEVYSKFHP 295 >gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193] gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193] Length = 312 Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M +Y+++HP Sbjct: 254 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMAVYNRSHP 310 >gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] Length = 298 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ ++++Y HP Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDVYRNAHP 296 >gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] Length = 367 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322 >gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] Length = 300 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++ R+ E+Y Q HP Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHP 298 >gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199] gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199] Length = 323 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+++++ HP Sbjct: 262 TATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAARLLDVHRSAHP 318 >gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/56 (64%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+V+ K + E+Y++ HP Sbjct: 239 VTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKHLTEVYNKYHP 294 >gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 300 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+ R+ E+Y Q HP Sbjct: 244 TPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTRLSEVYKQFHP 298 >gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2] gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580] gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYRQYHP 294 >gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] Length = 295 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y++THP Sbjct: 237 AITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTRLKDVYERTHP 293 >gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] Length = 302 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATH+L G DLR+IQ +LGH+ LSTTQ YT+V+ R+ME+YD+ HP Sbjct: 239 SPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSLDRLMEVYDKAHP 293 >gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 295 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL NG DLRS+Q++LGH+ L+TTQIYT+V +R+ I+++ HP Sbjct: 237 TISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRERLKRIHEEYHP 293 >gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862] Length = 303 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 47/56 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y ++HP Sbjct: 246 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYQKSHP 301 >gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] Length = 300 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++ R+ E+Y Q HP Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHP 298 >gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58] gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58] Length = 312 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ +++IY HP Sbjct: 255 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDIYRNAHP 310 >gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] Length = 320 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ GGDLR+IQ ++GH+ LS+TQIYT ++S ++ YD++HP Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSASLLAAYDRSHP 316 >gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13] Length = 296 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V RM ++Y HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMKDVYSMFHP 294 >gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx [Methylobacterium extorquens DM4] gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens DM4] Length = 365 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322 >gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21] gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21] Length = 298 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATH+L NG DLR++Q +LGHS +STTQIYT++ + R+ IYD++HP Sbjct: 240 SLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHP 296 >gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] Length = 365 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322 >gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] Length = 365 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHP 322 >gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] Length = 294 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQ+Y + R+ E+Y +THP Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQIAKNRIKEVYKKTHP 292 >gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] Length = 296 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLQDVYKKYHP 294 >gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] Length = 300 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG D+R++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 244 TPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTRLKDVYSQFHP 298 >gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 292 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL G DLR +Q +LGH+ LS+TQIYT V++ R+++IY HP Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAARLLDIYRTAHP 290 >gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 308 Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQ+YT V++ +M++Y HP Sbjct: 251 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAHLMDVYRNAHP 306 >gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 298 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL G DLRS+Q +LGH++LS+TQIYT++ +R+ E+Y+Q HP Sbjct: 241 HMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHP 293 >gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] Length = 297 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/56 (62%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP Sbjct: 238 VSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHP 293 >gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51] gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 298 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL G DLRS+Q +LGH++LS+TQIYT++ +R+ E+Y+Q HP Sbjct: 241 HMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHP 293 >gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 297 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 37/62 (59%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H+LRHSFATHLL G DLR+IQ +LGH LSTTQ YT V++ RMM+ YD+ HP Sbjct: 236 TATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVSTDRMMKEYDRAHPRSR 295 Query: 62 QK 63 +K Sbjct: 296 KK 297 >gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510] gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510] Length = 321 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL++GGDLR+IQ +LGH+ LSTTQ YT+V ++++M +Y HP Sbjct: 260 NATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQLMNVYRNAHP 316 >gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644] gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644] Length = 442 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRHSFATHLL G DLRS+Q +LGH RL+TTQIYT V +R++E Y + HP Sbjct: 386 TPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRERLLETYRKAHP 440 >gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 314 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+ +Y HP Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHP 310 >gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] Length = 295 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ +IY+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHP 293 >gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] Length = 295 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ +IY+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHP 293 >gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 159 Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 36/55 (65%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRS+Q +LGHS +STTQIY +N+ R+ +IY THP Sbjct: 103 TPHTLRHSFAAHLLENGADLRSVQEMLGHSDISTTQIYLKMNTGRIRDIYSHTHP 157 >gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH] gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH] Length = 325 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 35/60 (58%), Positives = 46/60 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K+K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKNK 296 >gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5] gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 313 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++ HP Sbjct: 255 TPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHP 309 >gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 317 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S ++ YD+ HP Sbjct: 259 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHP 315 >gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1] gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1] Length = 298 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + HT+RHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V K++ +Y +HP Sbjct: 239 LNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKKIKRVYKMSHP 296 >gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] Length = 313 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++ HP Sbjct: 255 TPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHP 309 >gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 296 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA+HLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294 >gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145] gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145] Length = 302 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 47/60 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+ E+YD HP T+ K Sbjct: 241 HKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKRLAEVYDSAHPRATKGKK 300 >gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] Length = 297 Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V RM ++Y + HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYSKFHP 295 >gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] Length = 306 Score = 80.5 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL+ G DLRS+Q +LGH+RLSTTQ+YT+V ++R+ IYD P Sbjct: 247 LKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTAERLKNIYDDKFP 304 >gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] Length = 318 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TTAHT RHSFATHL G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y HP I + Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313 Query: 63 KD 64 K+ Sbjct: 314 KN 315 >gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] Length = 307 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 35/62 (56%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH+ RHSFATHLL G DLR +Q +LGHS ++TTQIYT+V ++R+ E DQ HP +K Sbjct: 246 SAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRRLKEAIDQYHPRSVKK 305 Query: 64 DK 65 +K Sbjct: 306 EK 307 >gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TTAHT RHSFATHL G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y HP I + Sbjct: 248 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 307 Query: 63 KD 64 K+ Sbjct: 308 KN 309 >gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel] gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel] Length = 318 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TTAHT RHSFATHL G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y HP I + Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313 Query: 63 KD 64 K+ Sbjct: 314 KN 315 >gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205] gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205] Length = 311 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 1/60 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+H+LS GDLRS+Q +LGHS LSTTQIYT+V+ ++ +YDQTHP QKD Sbjct: 253 PHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPR-AQKD 311 >gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum magneticum AMB-1] gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 314 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+ +Y HP Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHP 310 >gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] Length = 325 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT V R++E++ + HP Sbjct: 267 TVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRVEVSRLLEVHAKFHP 323 >gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1] gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1] Length = 296 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ R+ E+Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLRLREVYTKAHP 294 >gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] Length = 299 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++S+ M EIY +T P Sbjct: 241 EVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQHMREIYKKTFP 297 >gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis] Length = 296 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL +G DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHP 294 >gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] Length = 295 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RHSFATHLL NG DLRS+Q +LGH+ +STTQIYT V ++ ++Y+++HP Sbjct: 239 TPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHKLRDVYEKSHP 293 >gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++ R+ E+Y HP Sbjct: 240 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIRLREVYTNAHP 294 >gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] Length = 296 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q +LGHS +STTQIYT+++ RM ++Y + HP Sbjct: 240 SPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTRMRDVYRKHHP 294 >gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 47/55 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL+NG DLR +Q +LGH+ +STTQIYT+++ +R+ E+YD+THP Sbjct: 241 TPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVERLREVYDKTHP 295 >gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] Length = 332 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 46/60 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT V+ R+ME+YD+THP +K Sbjct: 272 SPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVSLDRLMEVYDRTHPRGRKK 331 >gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 297 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSKFHP 295 >gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118] gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius UCC118] Length = 297 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHP 295 >gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 310 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHL+ G DLRSIQ +LGH LSTTQ YT V+ R+M +YD+ HP Sbjct: 250 SPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRAHP 304 >gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] Length = 290 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHP 288 >gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius CECT 5713] Length = 297 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHP 295 >gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 318 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+NG DLRSIQ++LGH+ LS+TQIYT V + R+ I+ HP Sbjct: 260 TATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHP 316 >gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125] Length = 299 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V RM ++Y HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMRDVYAHFHP 297 >gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] Length = 296 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/63 (53%), Positives = 47/63 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP + Sbjct: 234 VSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHIVSSKLHEVYQKAHPLTRR 293 Query: 63 KDK 65 DK Sbjct: 294 NDK 296 >gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] Length = 295 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V +R+ +++Q HP Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHP 293 >gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] Length = 299 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/62 (56%), Positives = 47/62 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K + Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLSEVYDQAHPRAKRKKQ 296 Query: 66 KN 67 K+ Sbjct: 297 KS 298 >gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] Length = 296 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++ +RM +Y HP Sbjct: 238 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQRMSSVYKTYHP 294 >gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18] gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18] Length = 292 Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR IQ +LGH+ LSTTQ YT V+ R+ME+YDQ HP Sbjct: 234 SPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVSIDRLMEVYDQAHP 288 >gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068] gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068] Length = 314 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLLS G DLR +Q +LGH+ + TTQIYT+V+ R+ +I+ Q HP Sbjct: 256 SMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHP 312 >gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1] gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1] Length = 324 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M T H LRHS+ATHLL+ G DLR +Q +LGH++L+TTQ+YT+V+ R+ EIY + HP Sbjct: 265 MDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHP 322 >gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] Length = 295 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ + TTQIYT++ S+ + +YD+THP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAVYDRTHP 293 >gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] Length = 296 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHP 294 >gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] Length = 295 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL NG DLR+IQ +LGH+ L+TTQ+YT+VN R+ ++Y + HP Sbjct: 239 TPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHP 293 >gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032] gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 296 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHP 294 >gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] Length = 290 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 48/57 (84%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLTDIYNRAHP 288 >gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] Length = 328 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ Y V++ +M +Y++ HP Sbjct: 270 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDTAHLMAVYNRAHP 326 >gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 300 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 48/66 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G DLRS+Q +LGHS + TTQIYT+V++K++ + Y+Q H I Sbjct: 235 LDAKVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQLQKAYEQFHAGI 294 Query: 61 TQKDKK 66 K+ + Sbjct: 295 HDKEDQ 300 >gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] Length = 295 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQFHP 293 >gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400] Length = 295 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V +R+ +++Q HP Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHP 293 >gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21] gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21] Length = 292 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +RM +++ + HP Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHAEFHP 290 >gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255] gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255] Length = 305 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H++RHSFATHLL GGDLR IQ +LGH+ LS+TQ YT V+ R+M++Y + HP Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTRLMDVYKKAHP 303 >gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] Length = 296 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 45/53 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ R+ E+Y+++HP Sbjct: 242 HTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYEKSHP 294 >gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] Length = 296 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ RM ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTRMKDVYSRYHP 294 >gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4] gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4] Length = 304 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT RHSFATHLL G DLR++Q +LGH RL+TTQIYT ++ +R+ IY++THP Sbjct: 248 TPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLERIKHIYEKTHP 302 >gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] Length = 311 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 44/61 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+V+ KR+ +YD HP ++ + Sbjct: 250 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHVDWKRLAAVYDAAHPRAKRERE 309 Query: 66 K 66 + Sbjct: 310 R 310 >gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4] gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4] Length = 302 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ S R+ E+Y + HP Sbjct: 239 APSPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTRVREVYRRAHP 295 >gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 295 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHP 293 >gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] Length = 295 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHP 293 >gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM 2380] Length = 295 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q++LGH+ +STTQIYT+V +RM I+ Q HP Sbjct: 239 TPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRERMKVIHQQHHP 293 >gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 280 Score = 79.3 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHLL G DLRSIQ +LGH+ LSTTQIYT V+++ + E Y +THP Sbjct: 222 SISPHKLRHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEHLKESYFRTHP 278 >gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] Length = 313 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L G DLRS+Q +LGH RL+TTQ YT+++ + +M++YDQ HP + K Sbjct: 251 HMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQHLMQVYDQAHPRAKEDGK 310 >gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] Length = 301 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATH+L NG DLR++Q +LGH+ +STTQIYT++ + R+ +++D+THP Sbjct: 245 TPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHP 299 >gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHP 293 >gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHP 293 >gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQIRQMYNQFHP 293 >gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHP 293 >gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/57 (61%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL+NG DLRS+Q +LGH+ LSTTQIYT+V +R+ +++ + HP Sbjct: 237 SISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRERLKQLHRELHP 293 >gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 304 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSF HL+ NG DLR++Q ++GHS +STTQIY ++N +R+ EIY + HP Sbjct: 248 TPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHP 302 >gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA] gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/58 (60%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRK 294 >gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] Length = 293 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V+ ++ME+YD+ HP Sbjct: 235 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKAHP 289 >gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] Length = 297 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y + HP Sbjct: 241 TPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYAKFHP 295 >gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 35/58 (60%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRK 294 >gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87] gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] Length = 327 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL G DLRS+Q +LGH RL+TTQ YT V+ +R+M +YD+ HP +K Sbjct: 268 SPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDEAHPRAQKK 327 >gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21] gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21] Length = 293 Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V+ ++ME+YD++HP Sbjct: 235 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKSHP 289 >gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N+N RM ++Y Q HP Sbjct: 238 TPHTLRHSFAAHMLQNGADIKSLQEMLGHSDISTTQMYLNLNMNRMRDVYMQAHP 292 >gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122] gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122] Length = 295 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y++ HP Sbjct: 237 SLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHP 293 >gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] Length = 543 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 45/62 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH FA+H+LSN GDLR++Q +LGHS L+TTQIYT+V+ + ++YDQ HP Sbjct: 482 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDFDHLAQVYDQAHPRAAASKI 541 Query: 66 KN 67 KN Sbjct: 542 KN 543 >gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] Length = 297 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 295 >gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 312 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 48/62 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHSFATH+L G DLR +Q +LGHSR+STTQ YT++N ++M+ YD+ HP +K Sbjct: 247 SPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNLDQVMQTYDKAHPLAREK 306 Query: 64 DK 65 DK Sbjct: 307 DK 308 >gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATH+L+NG DL+++Q +LGH LSTTQIYT+V +R+ E+YD+ P Sbjct: 242 SPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKERLKEVYDKAFP 296 >gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] Length = 294 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T +TLRHSFATHL+ NG DL+S+Q +LGH+ +STTQIY V R+ E+Y++THP Sbjct: 236 SITPNTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYVMKNRIKEVYNKTHP 292 >gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 300 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ HTLRHSFATHLL G D+RS+Q +LGH L TTQIYT+V++ R+ E Y++ HP Sbjct: 241 TSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTRLKEAYEKAHP 296 >gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 297 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ ++++Y HP Sbjct: 239 TATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHP 295 >gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11] gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21193] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9] gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30] gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132] gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1] gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus] gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30] gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ST398] gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981] gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus ED133] gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH60] gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS03] gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS00] gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS01] gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA131] gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA177] gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus T0131] gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21189] gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21172] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus JKD6159] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHP 293 >gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 336 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+NG DLRS+ +LGHS LSTT+IYT+++ +R+ ++Y Q HP Sbjct: 280 SPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTHISFERLKQVYQQAHP 334 >gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] Length = 306 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+++ + +IYDQ HP Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDFDHLAKIYDQAHP 300 >gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] Length = 302 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 47/58 (81%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H+ RH+FATHLL NG DLR+IQ +LGHS L+TTQ YT++N ++++YD+THP Sbjct: 238 LNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLNLSEILKVYDKTHP 295 >gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] Length = 313 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY ++ R++ I+ THP Sbjct: 252 TATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAATHP 308 >gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 373 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H+LRHSFATHLL G D+RS+Q +LGH RL+TTQ YT V+ + +M+ YDQ HP Sbjct: 312 TVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQAHP 368 >gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+ R+ Y HP Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQVDEARLTRAYRDAHP 310 >gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] Length = 329 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H++RH+FATH+L G DLRS+Q +LGH LSTTQ YT+V+ R+ME+YD+THP Sbjct: 272 SPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVSLDRLMEVYDKTHP 326 >gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 298 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL G DLRS+QS+LGH+ LSTTQIYT+V +R+ YD+ HP Sbjct: 239 LKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIERLKTAYDEAHP 296 >gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] Length = 310 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHL+ G DLR++Q++LGH+ L+TTQIYT+VNS R+ +YD+ HP Sbjct: 239 SPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHP 293 >gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] Length = 317 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 50/67 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ +R+ ++YD HP Sbjct: 250 VSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQRLAQVYDAAHPRA 309 Query: 61 TQKDKKN 67 K++KN Sbjct: 310 KTKNEKN 316 >gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 297 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL+ G DLRS+Q +LGH+ L++TQIYT V++ +++IY HP Sbjct: 239 TTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHP 294 >gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 332 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL +G D+RSIQ +LGH+RL+TT+IYT+V+ + + +YD THP Sbjct: 273 HQLRHAFATHLLDHGADVRSIQELLGHARLATTEIYTHVSRETLTRVYDATHP 325 >gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] Length = 294 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + ++ ++Y +THP Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHP 292 >gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655] Length = 295 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] Length = 294 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + ++ ++Y +THP Sbjct: 238 TPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHP 292 >gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] Length = 300 Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+F THLL G DLR+IQ +LGH RL+TTQ YT ++++ ++E+YD+THP Sbjct: 245 HTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHP 297 >gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB] gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans MPOB] Length = 294 Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL NG DLRS+Q++LGH+ +STTQIYT+V KR+ E++ + HP Sbjct: 238 TPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKRLKEVHLKFHP 292 >gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] Length = 342 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+ +YD HP Sbjct: 255 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAHP 307 >gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 86-028NP] gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP] gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae PittEE] gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE] gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2846] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] Length = 300 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H +RH+FATH+L G DLRS+Q +LGH+ LSTTQIYT+V RM E+Y Q HP Sbjct: 242 TISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHP 298 >gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII] gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] Length = 308 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] Length = 308 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] Length = 302 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT+RH+FATH+L+NG DLRS+Q +LGH LSTTQ+YT+V +R+ +Y +THP Sbjct: 246 SPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHP 300 >gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] Length = 297 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 50/64 (78%), Gaps = 2/64 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HT RHS+ATHLL G D+R++Q +LGH RLSTT+IYT+++ +R+ E+Y +THP + Sbjct: 234 TPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPR--SR 291 Query: 64 DKKN 67 ++KN Sbjct: 292 EEKN 295 >gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd KW20] gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20] gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 308 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6014059] gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6014059] Length = 308 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900] Length = 304 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 303 >gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans PD1222] gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 312 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+ ++ +Y HP Sbjct: 254 TATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAVYRAAHP 310 >gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2866] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae R3021] gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 22.4-21] Length = 185 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 127 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 184 >gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus] Length = 209 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHL+ G DLR++Q +LGH+ L+TTQIYT+VN+ R+ +YD+ HP Sbjct: 138 SPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHP 192 >gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2] gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii TCDC-AB0715] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 237 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 294 >gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 308 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] Length = 295 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRK 294 >gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 326 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQ+YT V++ R+M Y HP Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQVDAARLMSAYAAAHP 322 >gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013150] gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013113] gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013150] gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013113] Length = 308 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 304 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 303 >gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] Length = 303 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H LRHSFATHLL G DLR++Q +LGH LSTTQ YT++N + ++YDQ HP Sbjct: 239 VTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHINIDHLSKVYDQAHPQA 298 Query: 61 TQK 63 +K Sbjct: 299 QKK 301 >gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] Length = 310 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHL+ G DLR++Q +LGH+ L+TTQIYT+VN+ R+ +YD+ HP Sbjct: 239 SPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHP 293 >gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ Q HP Sbjct: 254 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLSELVLQHHP 308 >gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] Length = 295 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA+HL+ NG DL+S+Q +LGHS +STTQIY +KR+ E+Y + HP Sbjct: 239 TPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIYMTSGNKRVREVYAKAHP 293 >gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium] Length = 294 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T H LRHSFATHLL +G DLR++QS+LGH+ LSTTQIYT+V ++R+ YD HP Sbjct: 235 VNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTERLKRAYDDAHP 292 >gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] Length = 302 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/62 (54%), Positives = 49/62 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HT+RHSFATHLL NG DLRSIQ +LGHS +STT IYT+++++++ + Y HP + +K Sbjct: 240 SPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQKIKKEYQLFHPRVKKK 299 Query: 64 DK 65 +K Sbjct: 300 NK 301 >gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] Length = 304 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L GDLR++Q +LGH+ L+TTQIYT+V+ +R+ +YDQ+HP Sbjct: 242 HMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHP 294 >gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA] gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter sulfurreducens PCA] gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400] Length = 294 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V R+ME+YD+ HP Sbjct: 236 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHP 290 >gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] Length = 294 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HTLRHSFATHL+ NG DL+S+Q +LGHS +STTQ+Y + ++ ++Y++THP Sbjct: 236 SITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHP 292 >gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 304 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ R++ Y Q HP Sbjct: 246 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAARLLAAYAQAHP 302 >gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] Length = 296 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP + + Sbjct: 235 SPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRN 294 Query: 64 DK 65 K Sbjct: 295 TK 296 >gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47] Length = 300 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ HTLRHSFATHLL G D+RS+Q +LGH L+TTQIYT+V++ + ++Y++ HP Sbjct: 242 TSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAANLRQVYEKAHP 297 >gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] Length = 317 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 35/53 (66%), Positives = 45/53 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLLS G DLR+IQ +LGH+ +STTQIYT+V S+R++E +D+ HP Sbjct: 258 HGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHP 310 >gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL G DLR++Q +LGH +STTQIYT+VN RM E+Y++ HP Sbjct: 243 SPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHP 297 >gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++T HTLRHSFATHLL G +LR++Q +LGH+RLSTTQ YT++ ++++ YD+ HP Sbjct: 247 LTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHP 304 >gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58] gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58] Length = 310 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 47/58 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR++Q++LGH+ + TTQIYT+V+S+R++E+ +Q HP T Sbjct: 236 SPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRRLVELVNQRHPLAT 293 >gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8] gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8] gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000] Length = 296 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYFP 294 >gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 45/53 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+FA+HLL G DLR IQ +LGH+ LSTTQIYT+V+ K ++E+YD++HP Sbjct: 243 HTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHP 295 >gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 313 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 47/64 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HT+RH+FATHLL G DLR +Q +LGH RL+TTQIYT+++ ++ E+Y Q HP ++ Sbjct: 248 SPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASRD 307 Query: 64 DKKN 67 + N Sbjct: 308 NIDN 311 >gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 310 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS GDLRS+Q +LGHS LSTTQIYT+V+ ++ ++YDQ HP Sbjct: 251 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHP 303 >gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] Length = 308 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V+ +M+IYD HP Sbjct: 249 TATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVHLMKIYDACHP 305 >gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 342 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRH+FATHLLS GG++R+IQ +LGH+ LSTTQIYT V++ +M + HP Sbjct: 267 SATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRSAHP 323 >gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1] gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1] Length = 341 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 47/60 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ R+ ++YD+ HP +Q+ K Sbjct: 279 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFDRLTQVYDKAHPRASQEKK 338 >gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 233 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP T+ Sbjct: 175 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 232 >gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 309 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 35/56 (62%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V+++R++ Y HP Sbjct: 252 TTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAERLLNAYAAAHP 307 >gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 299 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FATHLL NGGDLR+IQ +LGH L+TTQ+YT+V+ +++++ +THP Sbjct: 240 TPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAHLVKVHQETHP 294 >gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684] gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684] Length = 313 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL NG DLRSIQ +LGH+ +STTQ+YT V S R+ Y +HP Sbjct: 257 SPHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHP 311 >gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] Length = 295 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293 >gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] Length = 294 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL NG DLR +Q +LGH+ LSTTQ+YT+VN R+ ++Y HP Sbjct: 238 TPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKARLHDVYKNHHP 292 >gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909] Length = 295 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293 >gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144] gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045] Length = 295 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293 >gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028] Length = 295 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHP 293 >gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1] gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4] Length = 294 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ + R+ E+Y + HP Sbjct: 238 TPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHP 292 >gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC 11170] gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC 11170] Length = 330 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ ++ ++ THP Sbjct: 271 TATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHP 327 >gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1] gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1] Length = 253 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHL+ G DLR++Q++LGH+ L+TTQIYT+VNS R+ +YD+ HP Sbjct: 182 SPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHP 236 >gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 300 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H+ RHSFATH+L +G DLR+IQS+LGHS LSTTQ YT++N +++IYD+ HP Sbjct: 238 LDFSPHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSDILKIYDEAHP 295 >gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] Length = 218 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ + R+ E+Y + HP Sbjct: 162 TPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHP 216 >gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] Length = 318 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ + HP Sbjct: 254 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLAELVLEHHP 308 >gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467] Length = 305 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76] gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342] Length = 296 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 309 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 36/64 (56%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ HTLRHSFATHLL G DLRS+Q +LGH L+TTQIYT+V++ R+ + Y+ HP T Sbjct: 241 TSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTARLRDTYELAHPHATA 300 Query: 63 KDKK 66 +K Sbjct: 301 ARRK 304 >gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment'] Length = 349 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS+ATHLL G DLR+IQ +LGHSRLSTTQ YT++N +M +YD+ HP Sbjct: 293 TPHGLRHSYATHLLQAGADLRAIQELLGHSRLSTTQRYTHLNLDHLMAVYDKAHP 347 >gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] Length = 309 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 47/61 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YDQTHP +K Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQHLAAVYDQTHPRSKRKKL 303 Query: 66 K 66 K Sbjct: 304 K 304 >gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1] gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188] gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98] gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1] gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188] gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98] gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031] gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043] gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312] gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630] gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF] Length = 296 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302] Length = 296 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2] gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3] gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5] gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96] gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704] gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1] gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol] gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1] gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6] gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG] gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11] gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2] gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3] gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5] gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96] gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704] gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1] gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol] gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1] gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6] gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11] gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137] gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017] gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027] gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141] gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244] gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012] gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645] gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341] gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346] gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B] gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A] gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62] Length = 296 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132] gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132] Length = 316 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L G DLRS+Q +LGH L+TTQ YT+++ +R+M++YD HP Sbjct: 252 HTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQRIMQVYDHAHP 304 >gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] Length = 296 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] Length = 296 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 240 TPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFP 294 >gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 77.4 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 39/64 (60%), Positives = 48/64 (75%), Gaps = 4/64 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL +G DLRS+Q +LGHSRLSTTQ YT+++ +M+ YDQ HP K Sbjct: 246 SPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTHLSLDGIMQTYDQAHP----K 301 Query: 64 DKKN 67 KKN Sbjct: 302 AKKN 305 >gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] Length = 294 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++ K + E+Y ++HP Sbjct: 237 VTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKHLTEVYQRSHP 292 >gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii] gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii] Length = 317 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G DLR+IQ +LGH+ LSTTQ YT++ + +++ +YD+THP Sbjct: 247 HTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLALYDRTHP 299 >gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 294 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 35/55 (63%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V R+ME+YD+ HP Sbjct: 236 SPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHP 290 >gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ] gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ] Length = 298 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHARHHP 296 >gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] Length = 299 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL +G DLR++Q++LGH+ +STTQIYT+V+ R++ +Y++ HP Sbjct: 243 SPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRARLVALYEKHHP 297 >gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ G DLR+IQ +LGH+ LSTTQ YT + R+ME++ + HP Sbjct: 263 TPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLMEVWTRAHP 317 >gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 308 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +S + H LRHSFATH+L G DLR++Q ILGH LSTTQ YT+V+ ++ME+YD HP Sbjct: 249 VSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVSMDKLMEVYDHAHP 306 >gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 295 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 32/54 (59%), Positives = 43/54 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 237 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHP 290 >gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 304 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 32/54 (59%), Positives = 43/54 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHP 299 >gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR] gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR] Length = 300 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+ +YD HP +K Sbjct: 241 HKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKRLASVYDSAHPRARKK 298 >gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 301 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ +++ ++ + HP Sbjct: 243 AISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEKLKGVHKKYHP 299 >gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 331 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ + ++ YDQ HP Sbjct: 270 TVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSLEHLIRAYDQAHPRSG 329 Query: 62 QK 63 +K Sbjct: 330 KK 331 >gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16] gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16] Length = 295 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY+ + S+++ ++Y + HP Sbjct: 239 TPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQKLKDVYHKAHP 293 >gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] Length = 302 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 46/61 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH+FATHLL G DLRS+Q +LGH L+TTQIYT+V+++R+ + Y Q HP + Sbjct: 242 SPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQRLKDTYQQAHPHAKVQ 301 Query: 64 D 64 D Sbjct: 302 D 302 >gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] Length = 298 Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V R+ ++Y Q HP Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHP 296 >gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 303 Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H+ RH++ATHLL++G DLR+IQ +LGH+RLSTTQ YT V+ +M +YD+ HP Sbjct: 249 HSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHP 301 >gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 310 Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT H RHSFATHLL +G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y HP + Sbjct: 247 TTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKSIIDHYKNFHPQVI 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC] gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC] gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] Length = 320 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + +YDQ HP +K Sbjct: 263 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDQAHPRARRK 320 >gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] Length = 331 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS LSTTQIYT+++ + + +IYD HP +K + Sbjct: 270 HKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQHLAQIYDAAHPRARRKKE 329 Query: 66 KN 67 + Sbjct: 330 EE 331 >gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus HTA426] gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 298 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V R+ ++Y Q HP Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHP 296 >gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] Length = 308 Score = 77.0 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL +G DLRS+Q +LGH+RL+TT YTN++ R++ IYD+ HP K Sbjct: 243 HMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLARIVGIYDKAHPRSDHK 300 >gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 316 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/53 (66%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++ Y+Q HP Sbjct: 262 HVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHP 314 >gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 306 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/53 (66%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++ Y+Q HP Sbjct: 252 HVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHP 304 >gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] Length = 323 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + TT HTLRH+FATHLL G D+RS+Q +LGH L TTQIYT+V++ + +Y++ HP Sbjct: 248 LRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYERAHPRA 307 Query: 61 TQK 63 K Sbjct: 308 RNK 310 >gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] Length = 345 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ ++ ++YD+ HP T K Sbjct: 280 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHASK 339 >gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] Length = 298 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 47/59 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + G+LR++QS+LGH+ LSTTQ+YT+++ + + E+YD+ HP +K Sbjct: 239 PHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQHLAEVYDKAHPRAKRK 297 >gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] Length = 314 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ Q HP Sbjct: 258 SPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVATARLQQLHQQHHP 312 >gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] Length = 298 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFA+HLL G DLR +Q +LGH +STTQIYT+V +R++EI+++ HP Sbjct: 240 NITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARERLIEIHERYHP 296 >gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] Length = 298 Score = 76.6 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 50/64 (78%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S T H LRHSFATHLL+ G DLR+IQ +LGH+ L+TT+ YT+++ ++ E+YD++HP Sbjct: 234 ISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRA 293 Query: 61 TQKD 64 ++D Sbjct: 294 GRRD 297 >gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] Length = 302 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHP 299 >gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] Length = 298 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY + ++++ ++Y++ HP Sbjct: 242 TPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQKLKDVYNKAHP 296 >gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] Length = 300 Score = 76.6 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 47/58 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP +K Sbjct: 242 HRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRARKK 299 >gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] Length = 302 Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHP 299 >gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885] gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT+RHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++ ++E Y + HP + Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLKAHPRLA 311 Query: 62 Q 62 Q Sbjct: 312 Q 312 >gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus thermodenitrificans NG80-2] gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] Length = 298 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V R+ ++Y Q HP Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHP 296 >gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379] gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379] Length = 295 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +R+ ++ + HP Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKRLHQEIHP 293 >gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 371 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL G DLRS+Q +LGH+RLSTTQ YT++ R++++YD+ HP Sbjct: 276 AISPHGLRHSFATHLLEAGADLRSVQELLGHARLSTTQRYTHLTLSRLVDVYDRAHP 332 >gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040] gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040] Length = 317 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ Q HP + Sbjct: 254 TPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHQHHPLAAKD 313 Query: 64 DK 65 D+ Sbjct: 314 DE 315 >gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] Length = 300 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL G DLRS+Q +LGH +LS+TQIYT++ +++ E+Y Q+HP Sbjct: 243 HMLRHTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREKLREVYRQSHP 295 >gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH+FATH+L NG D+RS+Q +LGH+ LSTTQ YT++ +M +YD+ HP + + Sbjct: 270 SPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTHITLDHLMRVYDKAHPRSSVR 329 Query: 64 DK 65 K Sbjct: 330 GK 331 >gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 321 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/53 (62%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL+NG DLR +Q +LGH LSTTQ+YT+V R+ E+Y HP Sbjct: 267 HDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHP 319 >gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] Length = 302 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++++R+ E+Y + P Sbjct: 244 TVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQRLQEVYRKYFP 300 >gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] Length = 299 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y++ HP Sbjct: 243 TPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHP 297 >gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] Length = 307 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS+ATHLL NG DLR++Q +LGH+ LSTTQ+YT+V+ R+ E + Q HP Sbjct: 251 TPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIARLKEAHKQAHP 305 >gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18] gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18] Length = 292 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V +R+ ++ + HP Sbjct: 236 SPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRERLKRLHAEFHP 290 >gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] Length = 302 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHP 299 >gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] Length = 296 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLR++Q +LGH+ +STTQ YT V+ +M +IY HP Sbjct: 240 TPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVKMKDIYSNAHP 294 >gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] Length = 292 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +RM +++ HP Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHP 290 >gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 297 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHSFATHLL+NG DLR+IQ +LGHS ++TT+IYT++ ++ I +Q HP + Sbjct: 236 SPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNKVRSILEQFHPRFKMR 295 Query: 64 DK 65 +K Sbjct: 296 NK 297 >gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS] gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS] Length = 302 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHP 299 >gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831] Length = 297 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQ+YT+V R+ ++Y HP Sbjct: 239 TITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKARLKDMYQSYHP 295 >gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334] gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang] gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334] gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang] gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W] gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II] Length = 293 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHP 291 >gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] Length = 294 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N ++ ++Y + HP Sbjct: 238 TPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHP 292 >gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] Length = 294 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N ++ ++Y + HP Sbjct: 238 TPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHP 292 >gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT] gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT] Length = 291 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L N DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP +K Sbjct: 232 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRK 290 >gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp. 1501(2011)] Length = 341 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 44/56 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ ++ ++YD+ HP T Sbjct: 282 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDKAHPRAT 337 >gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] Length = 301 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/54 (61%), Positives = 41/54 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT RHSFATHLL G D+R +Q +LGHS LSTTQIYT+V ++ + E+YD HP Sbjct: 245 PHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQHLKEVYDHAHP 298 >gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336] gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336] Length = 295 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L N DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP +K Sbjct: 236 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRK 294 >gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.] Length = 310 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 41/58 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATH+L G DLR +Q +LGH LSTTQ YT+V R+ME YD+ HP Sbjct: 251 VPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHVGIDRLMETYDKAHP 308 >gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1] gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1] Length = 311 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +T H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ + Y Q HP Sbjct: 253 ATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHP 309 >gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001] gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001] gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG] Length = 293 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHP 291 >gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99] Length = 295 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT++ ++ +IY HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHITKNQIRKIYQDYHP 293 >gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei] Length = 293 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHP 291 >gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] Length = 325 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 46/53 (86%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL +G DLR++Q++LGH+ ++TTQIYT+V+++R+ +I+ Q HP Sbjct: 271 HVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQRLKKIHRQFHP 323 >gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ EI+ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEIHAKHHP 296 >gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H+ RHS+ATHLL G DLR+IQS+LGH L+TTQ YT++N ++ +YD THP Sbjct: 248 MDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307 Query: 61 TQK 63 + K Sbjct: 308 SGK 310 >gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD HP Sbjct: 233 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 292 Query: 61 TQK 63 +K Sbjct: 293 KKK 295 >gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1] gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1] Length = 304 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQKD 64 H LRHSFATH+L + GDLR+IQ +LGH+ +STTQ+YT+++ + + ++YDQ HP + +KD Sbjct: 241 HMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQHLAQVYDQAHPRARRRKD 300 Query: 65 KKN 67 N Sbjct: 301 PDN 303 >gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 311 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/63 (53%), Positives = 48/63 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT+++ +++ + Y Q HP Sbjct: 243 LSIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEKLRDNYLQFHPHA 302 Query: 61 TQK 63 QK Sbjct: 303 KQK 305 >gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5] gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5] Length = 349 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ ++ ++YD+ HP T K Sbjct: 284 HLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHVSK 343 >gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 302 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 48/60 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP +++K Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKKRNK 302 >gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91] gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91] Length = 321 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 48/63 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 HTLRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP +K Sbjct: 259 PHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARKKP 318 Query: 65 KKN 67 K + Sbjct: 319 KTD 321 >gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 336 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR+IQ +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 274 HKLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333 Query: 66 KN 67 + Sbjct: 334 DD 335 >gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] Length = 300 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V +++ +IY +HP Sbjct: 242 SPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQKLKKIYHLSHP 296 >gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 306 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V +R+ ++Y ++HP Sbjct: 248 SPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHP 302 >gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] Length = 295 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YD HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRK 294 >gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083] gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083] Length = 314 Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL NG DLRSIQ++LGH+ ++TT+IYT+V R+ E+ Q HP Sbjct: 254 TPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLEARLQELVLQHHPLANDD 313 Query: 64 D 64 D Sbjct: 314 D 314 >gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD HP Sbjct: 255 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 314 Query: 61 TQK 63 +K Sbjct: 315 KKK 317 >gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 321 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLLS G DLR++Q +LGH+ ++TTQIYT+V+ R+ ++ Q HP Sbjct: 243 TVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHVDRDRLKALHRQFHP 299 >gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] Length = 295 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS L+TTQIYT+++ K + ++YDQ HP +K Sbjct: 237 HKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKHLTDVYDQAHPRAKRK 294 >gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 305 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RHS ATHLL G DLR +Q +LGHS L+TTQIYT+V+++R+ +YDQ HP Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHP 303 >gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365] gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365] Length = 395 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL +G DLR+IQ +LGH+ L++TQIYT V+ +M +YD +HP Sbjct: 303 TPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHP 357 >gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida subsp. multocida str. Pm70] gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70] Length = 295 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YD HP +K Sbjct: 237 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRK 294 >gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFA+HLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 249 TPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHP 303 >gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4] gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 295 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +R+ +++ + HP Sbjct: 239 SPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKKLHQEFHP 293 >gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] Length = 308 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +T H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ +R+ + Y Q HP Sbjct: 250 ATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAHP 306 >gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] Length = 291 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M H LRHSFATHLL NG D+R +Q +LGHS LSTTQIYT+V + ++++ Y + HP Sbjct: 231 MKLHPHMLRHSFATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQLVKAYKKAHP 288 >gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] Length = 289 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ +++ HP Sbjct: 231 AVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEARLAKVFAAHHP 287 >gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] Length = 313 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT RHSFATHLL G +LR +Q++LGHS + TTQIYT+++ KR++E Y + HP Sbjct: 255 EVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHP 311 >gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS LSTTQIYT+++ + + +IYD HP +K + Sbjct: 243 HKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDSAHPRARRKQE 302 >gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 294 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFA H+L NG D+RS+Q +LGHS +STTQ+Y +N +M ++Y +THP Sbjct: 240 HTLRHSFAVHMLQNGADIRSVQEMLGHSDISTTQVYLGMNMNKMRDVYMKTHP 292 >gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] Length = 298 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V +RM E++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQRMQELHAQHHP 296 >gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] Length = 311 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 47/55 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V ++R+ + ++Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANERLRQFHEQHHP 309 >gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] Length = 296 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L NG D++S+Q +LGHS +S+TQIY +N RM ++Y + HP Sbjct: 240 TPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVARMRDVYMKAHP 294 >gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] Length = 302 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT+RHSFATHLL +G DLRS+Q +LGH+ LSTTQIYT+V+++ + +Y + HP Sbjct: 244 NVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNEHVTNVYKKNHP 300 >gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] Length = 311 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+ RHSFA+HLL G DLR +Q +LGHS +STTQIYT+V +KR+ +Y HP Sbjct: 249 SAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHP 303 >gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQIYT+++ ++E Y + HP T Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLDYNSVIENYREFHPQTT 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] Length = 305 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RHS ATHLL G DLR +Q +LGHS L+TTQIYT+V+++R+ +YDQ HP Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHP 303 >gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 304 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP Sbjct: 245 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 297 >gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 344 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ YT V+ R+ + Y + HP Sbjct: 286 TATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVDRDRLFQAYSKAHP 342 >gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514] gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514] Length = 337 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHS+ATH+L G DLRS+Q +LGH+ L TTQ+YT+V+++R+ YD HP Sbjct: 279 SLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKRAYDSAHP 335 >gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] Length = 314 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V +R+ E++ Q HP Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQRLQELHRQHHP 312 >gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] Length = 342 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL NGGDLR+IQ +LGH+ LSTTQ YT V+++ +M + HP Sbjct: 284 TATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTESLMASWAAAHP 340 >gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC 19707] gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707] gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] Length = 300 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 47/58 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP +K Sbjct: 242 HRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRARKK 299 >gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFA+HLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 249 TPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHP 303 >gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V R+ IY QTHP Sbjct: 243 VSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLRHIYLQTHP 298 >gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 336 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333 Query: 66 KN 67 + Sbjct: 334 DD 335 >gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 336 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333 Query: 66 KN 67 + Sbjct: 334 DD 335 >gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] Length = 309 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ E++ + HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQERLKELHTRFHP 307 >gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum SS9] gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9] Length = 313 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP Sbjct: 254 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 306 >gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 310 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 43/54 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YD+ HP Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHP 303 >gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++ ++E Y + HP + Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLRAHPRM 306 >gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus] Length = 293 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/54 (61%), Positives = 45/54 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q H Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFH 292 >gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 305 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ + HP Sbjct: 235 SPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHP 289 >gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] Length = 297 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L+ G DLR++Q +LGHSRLS+TQ+YT+V R+ ++Y HP Sbjct: 241 SPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLRDVYRSAHP 295 >gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 336 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333 Query: 66 KN 67 + Sbjct: 334 DD 335 >gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 336 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333 Query: 66 KN 67 + Sbjct: 334 DD 335 >gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506] gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506] Length = 328 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQIY V+S +M + HP Sbjct: 269 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDSAALMAAWRAAHP 325 >gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] Length = 310 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 43/54 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YD+ HP Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHP 303 >gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/52 (61%), Positives = 39/52 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+ +YD H Sbjct: 256 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307 >gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] Length = 343 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/52 (61%), Positives = 39/52 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+ +YD H Sbjct: 256 HVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307 >gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae L20] gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 336 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 274 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 333 Query: 66 KN 67 + Sbjct: 334 DD 335 >gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] Length = 306 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP Sbjct: 247 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 299 >gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis ZM4] gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFA+HLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 249 TPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHP 303 >gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] Length = 305 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD HP + Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPR-S 298 Query: 62 QKD 64 QKD Sbjct: 299 QKD 301 >gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct] Length = 327 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 316 >gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] Length = 302 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT+RH+FATHLL +G DLRS+Q +LGH+ LSTTQIYT+V + R+ +Y + HP Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHP 300 >gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG] gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548] gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175] gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 244 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRRIYLQAHP 298 >gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct] gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] Length = 305 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD HP + Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPR-S 298 Query: 62 QKD 64 QKD Sbjct: 299 QKD 301 >gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp. novicida GA99-3549] gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112] gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549] gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2] gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2] Length = 329 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS+ATHLL+ G DLR +Q +LGH+ L+TTQIYT+V+ R+ +IYD+ HP Sbjct: 273 SPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDIYDKAHP 327 >gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 303 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATH+L+ G DLRS+Q +LGH+ +STTQIYT++ S + YD HP Sbjct: 245 TPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSAHP 299 >gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica FSC200] gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 306 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K + Sbjct: 244 HKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQ 303 Query: 66 KN 67 + Sbjct: 304 DD 305 >gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] Length = 337 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 50/63 (79%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP + Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHP-LA 318 Query: 62 QKD 64 +KD Sbjct: 319 RKD 321 >gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 303 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH+ RHSFATHLL G DLR +Q +LGH+ ++TTQIYT++ +KR+ + Y HP ++ Sbjct: 238 SAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKRLQDAYASFHPRSKEE 297 Query: 64 D 64 D Sbjct: 298 D 298 >gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 292 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 328 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 270 SPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTVEHLREVYASSHP 324 >gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223] gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037] gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037] Length = 301 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q ILGH+ L TTQIYT+V+ +R+ E Y HP Sbjct: 247 HALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGERLREAYRLAHP 299 >gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus] Length = 295 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIKKMYYPFHP 293 >gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678] Length = 300 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 242 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL J2-003] Length = 290 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/50 (66%), Positives = 41/50 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Sbjct: 241 TPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVY 290 >gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185] gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185] Length = 309 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 251 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 307 >gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92] gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92] Length = 299 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 47/61 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGH +STTQIYT+++ + +M++Y+ HP +K K Sbjct: 239 HRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQHLMQVYEGAHPRAHKKGK 298 Query: 66 K 66 K Sbjct: 299 K 299 >gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195] gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195] Length = 309 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 251 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 307 >gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 317 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 47/61 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP T+ Sbjct: 254 TPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHRHHPLATKD 313 Query: 64 D 64 D Sbjct: 314 D 314 >gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619] gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619] Length = 298 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296 >gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 48/60 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP +++K Sbjct: 238 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKKRNK 297 >gi|75763022|ref|ZP_00742813.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228967124|ref|ZP_04128160.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] gi|74489484|gb|EAO52909.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792493|gb|EEM40059.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] Length = 53 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 31/51 (60%), Positives = 42/51 (82%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +RHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 1 MRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHP 51 >gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155] gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155] Length = 309 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 251 ALSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 307 >gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12] gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12] Length = 301 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+FATHLL G DLR +Q +LGH R+STTQIYT++ S+++ + Y +HP + Sbjct: 236 VSPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAIK 295 Query: 63 KDKKN 67 K+ K Sbjct: 296 KETKE 300 >gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 292 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHP 290 >gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] Length = 312 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++ Y Q HP I + Sbjct: 249 VSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 308 >gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4] gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193] gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193] Length = 328 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ Q HP Sbjct: 254 TPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLQHHP 308 >gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] Length = 264 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ +++ Y + HP Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAATLLDTYRKAHP 260 >gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium efficiens YS-314] Length = 310 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+ ATHLL G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP Sbjct: 254 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHP 308 >gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296 >gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7] gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7] Length = 302 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++ Y Q HP I + Sbjct: 239 VSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIKK 298 >gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] Length = 294 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 46/59 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + + YDQ HP +KD Sbjct: 236 HMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDWQHLAKAYDQAHPRARKKD 294 >gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1] gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1] Length = 265 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ ++E Y HP Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLETYRGAHP 260 >gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7] gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1] gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298 >gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] Length = 305 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ + HP Sbjct: 235 SPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHP 289 >gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] Length = 311 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 47/62 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD HP ++ Sbjct: 249 HMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGAHPRARKRKD 308 Query: 66 KN 67 +N Sbjct: 309 EN 310 >gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + ++YD HP +K Sbjct: 241 HKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298 >gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3] Length = 312 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGHS +STTQ+YT+++ + + ++YD+ HP +K Sbjct: 245 HMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQEK 302 >gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + ++YD HP +K Sbjct: 241 HKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298 >gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] Length = 336 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 276 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 332 >gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 306 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + +YD+ HP + Sbjct: 246 VSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLANVYDEAHPRAHK 305 Query: 63 K 63 K Sbjct: 306 K 306 >gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia succiniciproducens MBEL55E] gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 295 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP Sbjct: 237 HKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHP 289 >gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329 >gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354] Length = 304 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 45/59 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR++Q++LGH+ ++TTQIYT+V S R++ + ++ HP Q Sbjct: 231 SPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESARLVALVNERHPLADQ 289 >gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato Max13] gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato K40] gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] Length = 306 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R++Q +LGHS +TTQIYT V R+ E+Y +HP Sbjct: 247 SPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVTVDRLREVYATSHP 301 >gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296 >gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 337 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 50/63 (79%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP + Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHP-LA 318 Query: 62 QKD 64 +KD Sbjct: 319 RKD 321 >gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12] gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12] Length = 308 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 47/67 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294 Query: 61 TQKDKKN 67 ++ K N Sbjct: 295 SRSKKLN 301 >gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F] gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY3-11A] Length = 288 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+FATHLL +G DLR IQ +LGH+ LSTTQ YT+++ + +M++Y++ HP Sbjct: 232 HTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQHLMDVYEKCHP 284 >gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296 >gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1] gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296 >gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila L48] gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 298 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296 >gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 300 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +RM +++ Q HP Sbjct: 242 SLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKERMKDLHAQHHP 298 >gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I] gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I] Length = 278 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATH+L NGG++ +IQ +LGHS L+TTQIYT+ N + E+Y +THP Sbjct: 219 NVTPHKLRHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYNVDELKEMYGRTHP 275 >gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] Length = 313 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ Q HP Sbjct: 257 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAQHHP 311 >gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 297 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLLS G DLRS+Q +LGHS LSTTQIYT+++ R+ E + P Sbjct: 235 IEAKVHTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQIYTHIDDSRLEESHRDFFP 292 >gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320] gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis] gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 307 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 248 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHP 300 >gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 332 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL G D+RS+Q +LGH RL+TTQ YT++ ++++E+YD+ HP Sbjct: 266 AVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYDRAHP 322 >gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit 7] Length = 298 Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296 >gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296 >gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 74.7 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 295 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DLR++Q +LGH+ +STTQIYT++++ R+ EI+ Q HP Sbjct: 239 SPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTARLQEIHRQAHP 293 >gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] Length = 312 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++ HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHP 310 >gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti 1021] gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein [Sinorhizobium meliloti 1021] gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] Length = 311 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAK 305 Query: 62 QKDKKN 67 Q K++ Sbjct: 306 QAKKQD 311 >gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] Length = 295 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H+LRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +R+ +++ HP Sbjct: 237 SISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKQLHQDIHP 293 >gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] Length = 282 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +RM E+++ HP Sbjct: 226 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQRMQELHEHHHP 280 >gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] Length = 312 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++Y + HP Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHP 308 >gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205] gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205] Length = 306 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM E++ + HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQELHSKHHP 304 >gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHP 296 >gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS DLRS+Q +LGHS LSTTQIYT+V+ ++ ++YDQ HP Sbjct: 251 HLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHP 303 >gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] Length = 297 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 35/53 (66%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN + E Y HP Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHP 294 >gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae B728a] gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHP 296 >gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] Length = 297 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 35/53 (66%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN + E Y HP Sbjct: 242 HTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHP 294 >gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88] gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88] Length = 303 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 46/58 (79%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 S ++TLRHSFA HLL NG D++S+Q +LGHS L+ TQIY+ +++K ++ E+Y +THP Sbjct: 244 SINSYTLRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIAEVYKKTHP 301 >gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)] Length = 312 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++ HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHP 310 >gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103] gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103] Length = 301 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293 >gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11] gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11] Length = 332 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 252 AVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHP 308 >gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] Length = 302 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHSFATHLL NG DLR +Q +LGHS LSTTQIY +V+ +R+ Y+ HP Sbjct: 246 HMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHP 298 >gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217] gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217] Length = 321 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP + + Sbjct: 260 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRAKKGRE 319 Query: 66 KN 67 K Sbjct: 320 KG 321 >gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHP 296 >gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS GDLRS+Q +LGHS LSTTQIYT+++ + ++YD+ HP Sbjct: 247 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHP 299 >gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] Length = 329 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329 >gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] Length = 309 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 47/63 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP +K Sbjct: 247 SPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKKK 306 Query: 64 DKK 66 K+ Sbjct: 307 TKE 309 >gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 303 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 47/57 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHLL G DLR++Q +LGH+ ++TT+IYT+V+S+R++E+ ++ HP Sbjct: 233 AVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHP 289 >gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36] gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36] Length = 333 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD HP +K Sbjct: 273 HKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDFQHLAKVYDAAHPRAKKK 330 >gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355] Length = 301 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293 >gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ G DLR+IQ +LGH+ LSTTQ YT + R+ E++ + HP Sbjct: 263 TPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLTEVWTRAHP 317 >gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] Length = 302 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP Sbjct: 245 SPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHP 299 >gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 303 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + GD+R+IQ +LGHS LS TQIYT ++ R+ ++YD+ HP +K Sbjct: 240 SPHMMRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTKLDFDRLAQVYDRAHPRAKRK 299 >gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] Length = 304 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 47/60 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGHS +STTQIYT+++ + + ++YD HP +K+K Sbjct: 244 HMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLSKVYDAAHPRARRKNK 303 >gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHP 296 >gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL NG ++ S++ +LGHS +STTQIYT+VN++R+ + + +THP Sbjct: 242 SPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQAFKKTHP 296 >gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp] gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAKHHP 296 >gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ +++ + HP Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHP 296 >gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 250 SLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHP 306 >gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] Length = 302 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP Sbjct: 245 SPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHP 299 >gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 315 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLLSNG DLR IQ +LGH+ +STTQIYT+V+ +R+ ++ + HP Sbjct: 260 HLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQRLKAVHHRFHP 312 >gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37] gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37] Length = 299 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 47/58 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + G+LR++Q++LGH+ L+TTQIYT+++ + + +IYDQ HP +K Sbjct: 241 HKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQHLSKIYDQAHPRAKRK 298 >gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b] gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b] Length = 302 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDSAHP 295 >gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum DSM 273] gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum DSM 273] Length = 341 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+FATHLL+ G DL+S+ +LGHS LSTT+IYT+V +R+ E+Y + HP Sbjct: 287 HTLRHTFATHLLNGGADLQSVSEMLGHSNLSTTEIYTHVTFERLREVYRKAHP 339 >gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHP 296 >gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 308 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ + Y Q HP Sbjct: 250 ASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHP 306 >gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] Length = 326 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/52 (65%), Positives = 39/52 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRHSFATHLL NG D+R IQ +LGHS LSTTQIYTNV+ + +YD Sbjct: 271 VTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYTNVDMDTIKSVYD 322 >gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] Length = 297 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQARLQELHQEHHP 295 >gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 329 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329 >gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] Length = 300 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 47/58 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQTHP +K Sbjct: 242 HRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKVYDQTHPRARKK 299 >gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018] gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] Length = 335 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+S G D+R++Q +LGH+ ++TTQIYT+++ +ME Y +HP Sbjct: 280 HTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTHISPDALMEAYVMSHP 332 >gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 326 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP +K Sbjct: 266 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRARRK 323 >gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia chaffeensis str. Arkansas] gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia chaffeensis str. Arkansas] Length = 311 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSFATHL G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y HP + +K Sbjct: 250 TPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKSVIDHYKNFHPQVIKK 309 Query: 64 D 64 + Sbjct: 310 N 310 >gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6] gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6] Length = 295 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ + Y Q HP Sbjct: 237 ASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHP 293 >gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] Length = 329 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329 >gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3] gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3] Length = 443 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V R+ E+Y +HP Sbjct: 356 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYAASHP 410 >gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. mori str. 301020] Length = 298 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] Length = 301 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 34/56 (60%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL N DLRSIQ +LGHS +STT IYT+V++ + +E Y + HP Sbjct: 240 VTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKAIEEYRKLHP 295 >gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] Length = 320 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 46/61 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR++Q +LGH+ + TTQIYT+++ + + ++YDQ HP +K Sbjct: 255 HLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQHLAQVYDQAHPRARKKAS 314 Query: 66 K 66 K Sbjct: 315 K 315 >gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct] Length = 299 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ +++ + HP Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHP 296 >gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 321 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 46/60 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP ++ K Sbjct: 260 HALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRAKKRPK 319 >gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] Length = 302 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGHS +STTQIYT+++ + + EIYD+ HP +K Sbjct: 243 HMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQHLAEIYDKAHPRAKKK 300 >gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] Length = 254 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ +++ HP Sbjct: 196 AISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQRLQQLHAAHHP 252 >gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL] gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL] Length = 291 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289 >gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] Length = 310 Score = 74.3 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 47/63 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP +K Sbjct: 247 SPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARKK 306 Query: 64 DKK 66 +K Sbjct: 307 GRK 309 >gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5] Length = 294 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N +M ++Y + HP Sbjct: 238 TPHTLRHSFAAHMLQNGADVKSVQEMLGHSDISTTQVYLNFGVAKMRDVYMKAHP 292 >gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] Length = 296 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP +K Sbjct: 237 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQHLAKVYDGAHPRARKK 294 >gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] Length = 323 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 49/64 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ E+ + HP Sbjct: 251 TPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRELVQEHHPLAVAS 310 Query: 64 DKKN 67 +K+ Sbjct: 311 RRKS 314 >gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus thermodenitrificans NG80-2] gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus thermodenitrificans NG80-2] Length = 309 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 253 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHP 307 >gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola CNS-205] gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205] Length = 345 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 285 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTMVTVQRLREVYATAHP 341 >gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RHSFATHLL NG DLR +Q +LGHS + TTQIYT++ ++++ E++ + HP Sbjct: 231 TPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTRKLREVFRKAHP 285 >gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 329 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329 >gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] Length = 305 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 46/60 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP ++ + Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQHLAKVYDAAHPRARKRKR 303 >gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] Length = 296 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + ++YD HP +K Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLADVYDSAHPRAKRK 295 >gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] Length = 296 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+ ATHLL G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP Sbjct: 240 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHP 294 >gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIRMQQLHEKYHP 303 >gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 246 VSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAHK 305 Query: 63 K 63 K Sbjct: 306 K 306 >gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a] gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a] Length = 355 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATH+L G DLRS+Q LGH+ L+TTQIYT+V +R+ ++Q HP Sbjct: 299 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHP 353 >gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHP 296 >gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49] Length = 138 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP ++D Sbjct: 80 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 138 >gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51] gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP Sbjct: 267 HKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHP 319 >gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1] gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAKKRD 306 >gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] Length = 323 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/53 (64%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL NG DLR++Q +LGHS LSTTQIYT+V R+ + D HP Sbjct: 259 HILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHP 311 >gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP Sbjct: 267 HKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHP 319 >gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354] Length = 299 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ +++ Y HP Sbjct: 233 NATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAASLLDTYRNAHP 289 >gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218] Length = 309 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 47/63 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP +K Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAHKK 306 Query: 64 DKK 66 K+ Sbjct: 307 AKE 309 >gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAO1] gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2] gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa LESB58] gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAb1] gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1] gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58] gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] Length = 298 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ +++ + HP Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHP 296 >gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440] gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1] gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440] gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1] Length = 298 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296 >gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 302 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295 >gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] Length = 319 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRH+FATHLL+NG DLR+IQ++LGH+ +STT+IYT+V R+ E+ HP Sbjct: 253 TVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHVLDARLTELVLDHHP 309 >gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059] gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii TCDC-AB0715] gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] Length = 305 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH FA+H+LSN DLR++Q +LGHS LSTTQIYT+V+ + +IYDQ HP K Sbjct: 246 HLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDFDHLAQIYDQAHPRAQHK 303 >gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V+ R++ + +Q HP Sbjct: 237 SPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDGARLVSLVNQRHP 291 >gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327] gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327] Length = 336 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L+ G DL+S+ +LGHS L+TT++YT+V R+ EIYD+ HP Sbjct: 282 HILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTHVTFSRLKEIYDKAHP 334 >gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] Length = 300 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 242 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRTLHEQHHP 298 >gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 313 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 254 TPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLQELVLEHHP 308 >gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR] gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR] Length = 302 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL G DLR++Q +LGH ++STTQIYT+V + + E+Y + HP Sbjct: 245 VSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREHLKEVYKKAHP 300 >gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + + +YD+ Sbjct: 255 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRAR 309 >gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1] Length = 298 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHP 296 >gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150] gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113] gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150] gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2] Length = 307 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 247 VSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAHK 306 Query: 63 K 63 K Sbjct: 307 K 307 >gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis 2002] gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis 2002] Length = 291 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289 >gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 306 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 304 >gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 250 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 194 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHP 248 >gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] Length = 312 Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQKLHAEHHP 310 >gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1] gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1] Length = 308 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V KR+ E+ + HP Sbjct: 251 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKRLQELVQKHHP 305 >gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2] gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2] Length = 329 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATH+L + GDLR++Q +LGH LSTTQIYT+++ +R+ ++Y+ HP Sbjct: 252 HQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQRLAQVYESAHP 304 >gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec] gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec] Length = 344 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH ATH++ G DLRS+Q +LGH+ LSTTQIYT+V +R+ +DQ HP Sbjct: 288 TPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAHP 342 >gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 315 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G DLR+IQ +LGHS +STTQIYT+V+ + E Y HP Sbjct: 257 HTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHP 309 >gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] Length = 299 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-S 59 M H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + + ++YD HP + Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 60 ITQKDK 65 Q+DK Sbjct: 294 KKQQDK 299 >gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 329 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 272 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 329 >gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 300 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+RSIQ +LGH+ LSTTQ YT+V +++ ++YD HP Sbjct: 244 SPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQLQQVYDAAHP 298 >gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/54 (61%), Positives = 42/54 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + + +YD+ Sbjct: 255 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308 >gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 326 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD +HP +K Sbjct: 266 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDASHPRARRK 323 >gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] Length = 310 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ + HP Sbjct: 252 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLRELVLEHHP 306 >gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia stuttgartiensis] Length = 295 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL NG DLR++Q +LGH +STTQIYT+VN + + I+ + HP Sbjct: 237 AISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHP 293 >gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] Length = 313 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRHSFA+HLL +G LRS+Q +LGH RL+TTQ YT++N ++ YD HP Sbjct: 250 SISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTHLNLAQITRAYDAAHPRSK 309 Query: 62 QKD 64 +KD Sbjct: 310 KKD 312 >gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 291 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289 >gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 319 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L +G D+RS+Q +LGH LSTTQ YT++N +++M +YD+ HP Sbjct: 252 HMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLNLQQIMNVYDKAHP 304 >gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 325 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V +R+ I+D+THP Sbjct: 271 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 323 >gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC 824] gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA 2018] Length = 292 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 A+TLRHSFA HLL NG D+++IQ +LGHS ++TTQIY+ + K R+ E+Y +THP Sbjct: 236 AYTLRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHP 290 >gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 349 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 41/58 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+M+++ + HP T Sbjct: 284 TPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRYTLADEARLMDVWTRAHPHAT 341 >gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] Length = 311 Score = 74.3 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLRS+Q +LGH+ + TTQIYT++ KR+++++ Q HP Sbjct: 255 SPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKRLVDVHRQCHP 309 >gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] Length = 291 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289 >gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108] gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108] Length = 291 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 235 TPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289 >gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHP 296 >gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 296 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294 >gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FATH+L+ G DLR++Q +LGH +STTQ+YT+V +R+ +YD HP Sbjct: 243 LRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKERLRHVYDTAHP 300 >gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] Length = 300 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] Length = 312 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DLR++Q +LGH+ ++TTQIYT+V+ + + ++ Q HP Sbjct: 256 SPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHP 310 >gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens str. C58] gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 331 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V +R+ E+ HP Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325 Query: 62 Q 62 Q Sbjct: 326 Q 326 >gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] Length = 302 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] Length = 300 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] Length = 315 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR+IQ++LGH+ L+TT+IYT+V R+ E+ + HP Sbjct: 252 TPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHRLRELVETHHP 306 >gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7] gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7] Length = 299 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-S 59 M H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + + ++YD HP + Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 60 ITQKDK 65 Q+DK Sbjct: 294 KKQQDK 299 >gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] Length = 331 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V +R+ E+ HP Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325 Query: 62 Q 62 Q Sbjct: 326 Q 326 >gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] Length = 310 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+F THLL G DLR+IQ +LGH RLSTTQ YT + ++ +YD+THP Sbjct: 255 HTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHP 307 >gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] Length = 296 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + ++YD HP +K Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQHLADVYDAAHPRAKRK 295 >gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR++Q++LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSHVRRLYDRFHP 296 >gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] Length = 315 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H +RH FATHLL +G DLRS+Q +LGH+ +STTQIYT++ R+ +++++ HP + + Sbjct: 252 HLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLRDVFEKAHPRAKRGGQ 311 Query: 66 KN 67 KN Sbjct: 312 KN 313 >gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 305 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] Length = 296 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294 >gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus 10329] Length = 305 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] Length = 303 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLANVYDAAHP 296 >gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 40/58 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RHSFATHLL NG DLR +Q +LGHS LSTTQ+Y +V +R+ + Y HP +K Sbjct: 247 HMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHAHPRAQEK 304 >gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 319 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+F THLL G DLR+IQ +LGH RLSTTQ YT + ++ +Y+QTHP Sbjct: 260 HTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQLTVTQVQTVYEQTHP 312 >gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016] gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] Length = 305 Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] Length = 362 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 306 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 360 >gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] Length = 305 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 294 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DL+SIQ +LGHS +S+TQIY + R +Y++ HP Sbjct: 238 TPHTLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRLVYNKCHP 292 >gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4] Length = 305 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B] gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B] Length = 305 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010] gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010] Length = 303 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ Q HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKERLKQLHGQHHP 301 >gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25] gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25] Length = 305 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC BAA-1116] gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116] Length = 305 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 303 >gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 2/67 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-- 58 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290 Query: 59 SITQKDK 65 + +KDK Sbjct: 291 AKAKKDK 297 >gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016] Length = 307 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 251 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHP 305 >gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295 >gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 330 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L+NG DL+S+ +LGH+ L+TT+IYT+V R+ E+YD+ HP Sbjct: 276 HALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHVTFGRVREVYDKAHP 328 >gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 301 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V +R+ I+D+THP Sbjct: 247 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 299 >gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 294 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y + K M E+YD HP Sbjct: 239 TPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAK-KSMKEVYDHYHP 292 >gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297 >gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 314 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATH+L G DLRS+Q +LGH LS+TQIYT+V + + ++Y +THP Sbjct: 256 VSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHP 311 >gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] Length = 323 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 35/63 (55%), Positives = 49/63 (77%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V R+ E+ HP + Q+ Sbjct: 251 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHP-LAQE 309 Query: 64 DKK 66 D + Sbjct: 310 DPR 312 >gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Sterne] gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. CNEVA-9066] gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Western North America USA6153] gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Kruger B] gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Vollum] gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Australia 94] gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium atrosepticum SCRI1043] gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] Length = 333 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM ++ Q HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHP 331 >gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 306 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM ++ Q HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHP 304 >gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134] Length = 305 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 303 >gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] Length = 298 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + + +YD HP Sbjct: 240 HKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHP 292 >gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. B076] gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHP 296 >gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 298 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] Length = 329 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLRS+Q +LGH+ L+TTQ+YT+V +R+ I+DQTHP Sbjct: 274 HGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDQTHP 326 >gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3] gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] Length = 301 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 1/66 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RH+FATHLL+NG DLRS+Q +LGH LS+TQIYT+V+ + + + Y HP Sbjct: 237 IKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEHLRQAYALAHPR- 295 Query: 61 TQKDKK 66 +KD+K Sbjct: 296 ARKDRK 301 >gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 301 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR++Q++LGH+ ++TTQIYT+VNS ++E+ + HP Sbjct: 235 SPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAHLVELVNARHP 289 >gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 297 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH++ATHLL NG D+R +Q +LGH +STTQIYT+V+ +R+ +Y +HP ++ Sbjct: 236 TPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKERLAHVYAYSHPHGRKQ 295 Query: 64 DK 65 D+ Sbjct: 296 DE 297 >gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] Length = 300 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 242 ALSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRALHEQHHP 298 >gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] Length = 307 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD HP ++ Sbjct: 245 HKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRRKD 304 Query: 66 KN 67 ++ Sbjct: 305 ED 306 >gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis LMG 19424] gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 310 >gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 294 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y + K M E+YD HP Sbjct: 239 TPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMYQSAK-KSMKEVYDHYHP 292 >gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] Length = 306 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAKKRD 306 >gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 297 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + + HT RH+FATHLL++ DLRS+Q +LGHS L+TTQIYT+V + RM EIY + H Sbjct: 239 APSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATARMHEIYKKAH 294 >gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1] gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] Length = 312 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++Y + HP Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHP 308 >gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187] gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187] gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] Length = 299 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis str. Al Hakam] gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al Hakam] gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 302 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] Length = 304 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL G DLR +Q +LGH+ L+TTQIYT V+ + + E+Y +HP Sbjct: 247 TPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVESLREVYATSHP 301 >gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] Length = 339 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR +Q +LGH+ LSTTQ YT++N + +YDQ HP Sbjct: 281 SPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHP 335 >gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5] gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5] Length = 323 Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 320 >gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] Length = 302 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 299 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. A1055] gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI] gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 299 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] Length = 301 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 299 >gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70] gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70] Length = 283 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 227 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 281 >gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L] gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus E33L] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 474 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRHSFATHLL G DLRS+Q +LGH+RL+TTQ YT++ ++E+YD+ HP Sbjct: 364 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHP 420 >gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] Length = 323 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 320 >gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica CNB-440] gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440] Length = 325 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 265 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHP 321 >gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] Length = 311 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL+ G DLRS+Q +LGHS +STTQIYT+++ + ++Q HP Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPTLRNTHEQFHP 293 >gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] Length = 306 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++ Q HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARARLQQLHQQHHP 304 >gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 10987] gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus ATCC 10987] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] Length = 294 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ +R+ E++ + HP Sbjct: 238 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARERLKELHSKYHP 292 >gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603] gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603] Length = 301 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 299 >gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 291 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL+ G DLR +Q ++GH+ ++TTQIYT+V+ R+ +++ Q HP Sbjct: 235 SPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHP 289 >gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont] Length = 297 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] Length = 255 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS LSTTQIYT V+ + E+Y HP Sbjct: 197 SPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSRDTVREVYALAHP 251 >gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 300 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri A1501] gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501] Length = 298 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++ R+ E++ HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHP 296 >gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 302 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] Length = 300 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 244 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHP 298 >gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 472 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRHSFATHLL G DLRS+Q +LGH+RL+TTQ YT++ ++E+YD+ HP Sbjct: 362 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHP 418 >gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999] Length = 303 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V S+R+ I + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASERLTHIIESHHP 301 >gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf0-1] gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296 >gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] Length = 313 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL++G DLR +Q +LGHS L+TTQIYT+V +R+ E++ + HP Sbjct: 257 SPHTLRHSFATHLLNHGADLRVVQLLLGHSDLTTTQIYTHVARQRLQELHARHHP 311 >gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] Length = 302 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617] Length = 297 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 327 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP +K Sbjct: 266 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRARRK 323 >gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|213025044|ref|ZP_03339491.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 74 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 18 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 72 >gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] Length = 298 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296 >gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264] gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264] gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei DM98] Length = 244 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 186 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 244 >gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] Length = 326 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V R+ I+D+ HP Sbjct: 272 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 324 >gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] Length = 310 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V M E+Y +HP Sbjct: 253 SPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTPDTMREVYAASHP 307 >gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676] gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125] Length = 303 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL+NG DLR +Q +LGH LSTTQ+YT+V R+ ++Y HP Sbjct: 247 SPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLRDVYRTHHP 301 >gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM 4166] Length = 298 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++ R+ E++ HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHP 296 >gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 297 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae NTUH-K2044] gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] Length = 300 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] Length = 305 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH ATHLL G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHP 303 >gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar chinensis CT-43] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 300 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus HTA426] gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 289 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 233 SPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHP 287 >gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] Length = 353 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+RS+Q +LGH+ ++TTQIYT V + E+Y HP Sbjct: 296 SPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVTVDALREVYVTAHP 350 >gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] Length = 299 Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836] gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836] Length = 312 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V+S+R+ Y+Q HP Sbjct: 256 SPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERLRSAYEQAHP 310 >gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 304 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRHS ATHLL G DLR +Q ILGHS L+TTQIYT+V+ +R+ ++++Q HP Sbjct: 246 SLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAHP 302 >gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 321 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V ++ EI+ THP+ ++D Sbjct: 246 HVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLKEIHAATHPAKLERD 304 >gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 490 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRHSFATHLL G DLRS+Q +LGH+RL+TTQ YT++ ++E+YD+ HP Sbjct: 380 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHP 436 >gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 44/62 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 HTLRHSFATHLL G DLRS+Q +LGH +STTQ+YT+V+ + E+Y HP + + Sbjct: 242 HTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHVREVYLSAHPRAHEAFR 301 Query: 66 KN 67 K+ Sbjct: 302 KD 303 >gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 166 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 110 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 164 >gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222] Length = 304 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHP 302 >gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 316 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 260 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 314 >gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] Length = 302 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295 >gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] Length = 308 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHP 306 >gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis CGDNIH1] gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter bethesdensis CGDNIH1] Length = 300 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL+ G DLR+IQ +LGH+ LSTTQ YT V+ +++ ++ + HP Sbjct: 243 TPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQLLAVWQKAHP 297 >gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 14579] gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 14579] Length = 294 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 235 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 292 >gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] Length = 301 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ R+ E+Y ++ P Sbjct: 244 VSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHISHYRLQEVYRKSFP 299 >gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] Length = 312 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATHLL + GDLR++Q +LGH+ ++ TQ+YT+++ + + IYDQ HP ++D Sbjct: 250 HVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLARIYDQAHPRAKKRD 308 >gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1] gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1] Length = 177 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR +Q +LGH+ LSTTQ YT++N + +YDQ HP Sbjct: 118 VSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHP 173 >gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14] gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14] Length = 301 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHP 295 >gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 304 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHP 302 >gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10] gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar Microtus str. 91001] gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 32953] gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua] gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516] gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides F] gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola] gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92] gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10] gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516] gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua] gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92] gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F] gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola] gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004] gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038] gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297 >gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 320 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQIYT+V+S R+ + Y Q HP Sbjct: 266 HGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAHP 318 >gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] Length = 324 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+++++ + HP Sbjct: 266 TPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADESRLLDVWTRAHP 320 >gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22] gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22] Length = 300 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] Length = 298 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHEQHHP 296 >gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 296 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + +YD HP +K Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAAVYDAAHPRAKRK 295 >gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis z3032] gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032] Length = 306 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 247 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 299 >gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 297 >gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 300 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395] gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395] gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395] gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803] gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803] Length = 302 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 300 >gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32] gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32] Length = 320 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 264 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHP 318 >gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 315 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HL+ NG DLR IQ +LGH+ ++TTQIYT+VN K + EI+ + HP Sbjct: 248 PHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHP 301 >gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi 35000HP] gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP] Length = 304 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL DLR++Q +LGHS LSTTQIYT+++ + + +IYD +HP +K Sbjct: 244 HKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDASHPRARRK 301 >gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217] gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217] Length = 303 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQDLHRQHHP 301 >gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] Length = 300 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134] Length = 327 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 271 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 325 >gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] Length = 304 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHTQHHP 302 >gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] Length = 336 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLRS+Q +LGH+ +S T++YT+V S+R+++I+ + HP Sbjct: 262 SPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERLLQIHRKYHP 316 >gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] Length = 332 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHS ATHL+ G DLRS+Q LGHS L+TTQIYT+V+++R+ DQ HP Sbjct: 276 TPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQIYTHVSAERLRRTVDQAHP 330 >gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFA+HLL++G DLR IQ +LGH+ +STT+IYT+++S R+ I+ + HP Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHP 297 >gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] Length = 299 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC BAA-895] gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895] Length = 300 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] Length = 297 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FA+HLL++G DLRSIQ +LGHS LSTTQIYT++ +R+ ++ + HP Sbjct: 241 SPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHP 295 >gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385] gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] Length = 328 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DL+S+ +LGHS L+TT+IYT+V R+ E+Y + HP Sbjct: 273 PHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEVYRKAHP 326 >gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703] Length = 302 Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295 >gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453] gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453] Length = 294 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 35/55 (63%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y + K M E+YD HP Sbjct: 239 TPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMYQSTK-KSMKEVYDHYHP 292 >gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] Length = 311 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DKKN 67 +K + Sbjct: 308 NKDD 311 >gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] Length = 290 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y HP Sbjct: 230 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYATAHP 286 >gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] Length = 295 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V +R+ +++ + HP Sbjct: 239 SPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKERLKQLHSEHHP 293 >gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] Length = 303 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + G+LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 244 SPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK 303 >gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638] gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638] Length = 300 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDSAHP 294 >gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX] gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX] Length = 303 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATHLL+ G DLRS+Q ILGH+ L++TQIYT+V+ R+ +Y Q HP Sbjct: 246 TGPHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGRLASVYQQAHP 301 >gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4] Length = 267 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 263 Query: 64 DKKN 67 +K + Sbjct: 264 NKDD 267 >gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4] gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4] Length = 312 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVATARLQKLHAEHHP 310 >gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] Length = 315 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y +HP Sbjct: 257 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYASSHP 311 >gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] Length = 299 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] Length = 299 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1] gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1] Length = 130 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 71 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 128 >gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82] gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1 str. NRG 857C] gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2] Length = 298 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD THP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDATHP 292 >gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis EO147] Length = 306 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM 265] gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265] Length = 325 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL++G DL+S+ +LGHS LSTT+IYT+V+ +R+ E+Y + HP Sbjct: 271 HILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSFERLKEVYRKAHP 323 >gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] Length = 314 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP Sbjct: 255 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 307 >gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] Length = 315 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATH+L+NG ++R++Q +LGH+ + TTQIYT+V R+ I+ Q HP Sbjct: 257 AVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSRLKAIHKQCHP 313 >gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 304 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP ++ Sbjct: 243 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDSAHPRAKKRGN 302 Query: 66 KN 67 K+ Sbjct: 303 KS 304 >gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V + R+ ++ Q HP Sbjct: 247 SPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLAQVVQQNHP 301 >gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7] gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7] Length = 314 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP Sbjct: 255 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 307 >gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] Length = 308 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHS+ATH+L G DLRSIQ ILGHS + TT+IYT+V +K++ + Y++ +P +Q Sbjct: 238 TPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNKQLFDAYNKFNPLASQ 296 >gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] Length = 314 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP ++ Sbjct: 255 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKKR 312 >gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium] Length = 321 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FATHLL G DLRSIQ +LGH+ L+TTQ YT+++ + +IYD HP Sbjct: 257 TPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLANLTKIYDAAHP 311 >gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296 >gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC BAA-894] gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601] gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601] Length = 141 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V +R+ E+ HP Sbjct: 82 VTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLRELVLDHHP 137 >gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus] gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL G D+RSIQ +LGHS LSTTQ YT V +++ ++YD HP Sbjct: 244 SPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHP 298 >gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] Length = 299 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 310 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT + ++ +Y+++HP Sbjct: 255 HTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEESHP 307 >gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATHLL G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP Sbjct: 236 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHP 290 >gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] Length = 298 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 240 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 296 >gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis C6786] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] Length = 301 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290 Query: 61 TQK 63 K Sbjct: 291 KAK 293 >gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] Length = 310 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVRLQQLHSQHHP 303 >gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T] gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T] Length = 309 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHP 307 >gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis MSMB43] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 304 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR++Q +LGH+ L +TQIYT+ +R++++Y HP Sbjct: 248 SPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRERLLQVYLHAHP 302 >gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586] gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586] Length = 310 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603] gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603] Length = 310 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] Length = 316 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + + E+Y +HP Sbjct: 258 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVEHLREVYATSHP 312 >gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1] Length = 145 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 89 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 143 >gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] Length = 315 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP Sbjct: 256 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 308 >gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] Length = 357 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 45/62 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFA HLL DLR++Q +LGHS LS+TQIYT +++ + ++YDQTHP Sbjct: 288 TITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTKLDADHLAQVYDQTHPRAR 347 Query: 62 QK 63 +K Sbjct: 348 RK 349 >gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 313 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ R+ ++DQ HP Sbjct: 259 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHP 311 >gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223] gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223] Length = 310 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHP 296 >gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL +G DLRSIQ +LGH+ LSTTQ YT V+++R++ Y HP Sbjct: 248 TPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHP 302 >gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16] gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16] Length = 312 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHP 310 >gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQTLHAEHHP 302 >gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY] gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY] Length = 323 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + +YD HP +K Sbjct: 265 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRARRK 322 >gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] Length = 307 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP ++D Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAKKRD 307 >gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341] gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341] Length = 310 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573] gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573] Length = 266 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARKK 263 Query: 64 DK 65 +K Sbjct: 264 NK 265 >gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] Length = 316 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP +K Sbjct: 248 TPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARKK 307 >gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S] gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S] Length = 313 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ R+ ++DQ HP Sbjct: 259 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHP 311 >gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae] Length = 303 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 301 >gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/54 (61%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL NG DLR +QS+LGH LSTTQIYT+V+ + + +THP Sbjct: 240 PHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHP 293 >gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria AMMD] gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 303 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHP 296 >gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 294 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQIYT+V+++R+ +YDQ HP Sbjct: 238 SPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQRLKNVYDQAHP 292 >gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] Length = 323 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD THP Sbjct: 256 HMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHP 308 >gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] Length = 299 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V +R+ + Y Q HP Sbjct: 245 HMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKERLQKNYRQFHP 297 >gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] Length = 319 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 STT H LRHSFATHL G D+R IQ +LGH LSTTQIYT+++ K +++ Y HP Sbjct: 254 STTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKSIIDNYMGFHPQTV 313 Query: 62 QKD 64 +K+ Sbjct: 314 KKN 316 >gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888); contains similarity to Pfam family PF00589 ('Phage' integrase family), score=227.1, E=2.5e-64, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 315 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V +R+ E+ + HP Sbjct: 256 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVETHHP 310 >gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58] gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58] Length = 373 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q +LGH+ L TTQ+YT+V+ R+ E Y Q HP Sbjct: 319 HALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHP 371 >gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 314 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 256 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVDAAHLLGAYAAAHP 312 >gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B] gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B] Length = 336 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+ YD+ HP Sbjct: 282 HGLRHSAATHLLEGGADLRSVQEILGHATLATTQLYTHVSIERLRATYDRAHP 334 >gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 296 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N + + ++YD HP +K Sbjct: 238 HKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQHLAQVYDSAHPRAKRK 295 >gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016] gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016] Length = 322 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP +K Sbjct: 254 TPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARKK 313 >gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2] gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2] Length = 302 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RHSFATHLL NG DLR +Q +LGH+ LSTTQ+Y +V +R+ + Y HP +K Sbjct: 245 HMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHAHPRAQEK 302 >gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 244 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRVLHEQHHP 298 >gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a] gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni ACN14a] Length = 349 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V R+ E+Y +HP Sbjct: 274 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHP 328 >gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] Length = 299 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] Length = 304 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD HP ++ Sbjct: 244 HMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQHLSKVYDTAHPRARKR 301 >gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] Length = 333 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L+ G DLR++Q ILGH+ ++TTQIYT+++ ++ E+Y HP Sbjct: 279 HTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHIDRTQLREVYLAAHP 331 >gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 328 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR+IQ +LGHS LSTTQ YT+V+ ++M++YD HP Sbjct: 265 SPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHP 319 >gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii] Length = 305 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ ++Q HP Sbjct: 251 HGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTERLRRAFNQAHP 303 >gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1] gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1] Length = 295 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V++ R++E+ + HP Sbjct: 233 SPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVELVNSRHP 287 >gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1] Length = 307 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V + E+Y HP Sbjct: 247 AVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHP 303 >gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 346 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL +G DLRSIQS+LGH+ LSTTQ YT+++ + +Y++ HP Sbjct: 260 HGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTHLDMGHLFSLYERAHP 312 >gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] Length = 307 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD HP ++ Sbjct: 245 HKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302 >gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] Length = 302 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 295 >gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010] gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010] Length = 302 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA+H+L + GDLR++Q +LGHS +STTQIYT+V+ + + ++YD HP ++ Sbjct: 243 HRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQHLAKVYDSAHPRAKKR 300 >gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162] Length = 294 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L NG D++S+Q +LGH+ +S+TQIY +N +M ++Y + HP Sbjct: 238 TPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLNVSKMRDVYMKAHP 292 >gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] Length = 305 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q +LGH+ ++TTQIYT+V S R+ E+ HP Sbjct: 247 SPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHP 301 >gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] Length = 307 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP ++D Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKRD 307 >gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 300 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLLS G D+R +Q +LGH+ ++TTQ+YT V + + E+Y Q+HP Sbjct: 259 SPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVTADSLREVYVQSHP 313 >gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 176 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 228 >gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 149 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 91 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHP 147 >gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] Length = 306 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 355 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP ++D Sbjct: 297 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 355 >gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] Length = 312 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 48/64 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAKVYDQAHPRARKK 307 Query: 64 DKKN 67 + K+ Sbjct: 308 NNKD 311 >gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 301 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293 >gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146] gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] Length = 299 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297 >gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163] gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 302 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295 >gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 300 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] Length = 306 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] Length = 324 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 252 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHP 306 >gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21] gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21] Length = 292 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR++Q++LGH+ ++TTQIYT+V++ R++++ ++ HP Sbjct: 230 SPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAARLVKLVNERHP 284 >gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] Length = 328 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ HP Sbjct: 254 TPHTLRHAFATHLLANGADLRAIQTLLGHADIATTEIYTHVLEARLQELVMDHHP 308 >gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] Length = 298 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD HP +K Sbjct: 238 HLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQHLAKVYDAAHPRARRK 295 >gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114] gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] Length = 298 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHP 296 >gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c] gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c] Length = 294 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K + Sbjct: 235 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 294 >gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] Length = 331 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E+Y THP Sbjct: 272 NVSPHTLRHSFATHLLQGGADVRVVQELLGHASVTTTQIYTMVTPDTLREVYAATHP 328 >gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum R] gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R] Length = 315 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+ ATHLL G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHP 313 >gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] Length = 320 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL+ G DLRS+Q +LGH+ ++TTQIYT+++++R+ ++Y HP Sbjct: 257 SPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHP 311 >gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] Length = 302 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSEHHP 300 >gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 186 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 128 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 180 >gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] Length = 369 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 46/60 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQ HP + K Sbjct: 283 HMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAKVYDQAHPRAGRASK 342 >gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] Length = 304 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 48/67 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRH+FATHLL+NG DLRS+Q +LGH+ LS+TQIYT++ ++ E Y HP Sbjct: 237 LSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHITKDKLRENYMHLHPRA 296 Query: 61 TQKDKKN 67 ++ K++ Sbjct: 297 HRQTKED 303 >gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 325 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q +LGH+ LSTTQ Y ++ ++++YDQ HP Sbjct: 259 HALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLTMDHLLKVYDQAHP 311 >gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 300 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] Length = 304 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKNIHSQHHP 302 >gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] Length = 300 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 242 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 294 >gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] Length = 307 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RHSFATH+L NG DLR +Q +LGH L TTQIYT+V R+ ++ D+ HP Sbjct: 248 PHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQDRLRKVVDEAHP 301 >gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60] Length = 299 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297 >gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens SBW25] gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25] Length = 298 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHP 296 >gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 294 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T H +RHSFATHLL G DLRS+Q +LGHS +STTQIYT V+ R+ + Y + HP Sbjct: 234 VNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHP 291 >gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 304 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 51/63 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP T+ Sbjct: 238 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATRP 297 Query: 64 DKK 66 ++ Sbjct: 298 GRR 300 >gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] Length = 311 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ R+ E+Y HP Sbjct: 254 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVSPHRLREVYAGAHP 308 >gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602] gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602] Length = 303 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHP 296 >gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 304 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQIYT+V+ +R+ +++Q HP Sbjct: 250 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAVHNQAHP 302 >gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] Length = 297 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114] gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] Length = 303 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + G+LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 244 SPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK 303 >gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8] gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8] Length = 301 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQDLHQAHHP 299 >gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 303 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATH+L +G DLRSIQ +LGH+ LSTTQ YT V+++R++ Y HP Sbjct: 247 TPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHP 301 >gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 310 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V +R+ E+Y HP Sbjct: 252 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVERLREVYATAHP 306 >gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] Length = 295 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRH+ ATHLL G DLR++Q LGHS L TTQIYT+V+ +R+ +IY+ HP Sbjct: 239 TPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGERLKKIYNNAHP 293 >gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] Length = 300 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 42/59 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH+ RHSFATHLL DLR +Q +LGHS +STTQIYT++ KR+ +YD+ I + Sbjct: 238 SAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKRLSSVYDRCFQKIEK 296 >gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis TXDOH] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis Bt4] gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC 23344] gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10229] gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 7894] gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei NCTC 13177] gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344] gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229] gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] Length = 310 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 252 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 310 >gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei K96243] gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 14] gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 91] gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 9] gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei B7210] gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 112] gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243] gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] Length = 310 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 252 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 310 >gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] Length = 311 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT+RH+FATHLL +G DLR++Q +LGH LSTTQIYT+V ++R+ +Y++ HP Sbjct: 255 SPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHP 309 >gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis G4] gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565] gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565] Length = 325 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 261 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHP 313 >gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB] gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB] Length = 297 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] Length = 299 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 297 >gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] Length = 307 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ E+ + HP Sbjct: 248 VSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHP 303 >gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] Length = 392 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 336 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRSLHAQHHP 390 >gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] Length = 307 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 251 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRMLHEQHHP 305 >gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 303 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATHLL G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP Sbjct: 247 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHP 301 >gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] Length = 307 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL G DLR++Q +LGHS +S T+IYT++ + R+ I+ Q HP Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGRLRSIHQQYHP 303 >gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR++Q +LGH+ LSTTQ YT++N + +YD+ HP Sbjct: 272 SPHALRHSFATHLLEMGADLRTVQELLGHASLSTTQRYTHLNLDHLTAVYDKAHP 326 >gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR] gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR] Length = 300 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V +R+ ++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARERLQALHAQHHP 298 >gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii NGR234] gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234] Length = 313 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 47/64 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ E+ HP Q Sbjct: 250 SPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHELVQNHHPLAKQA 309 Query: 64 DKKN 67 K++ Sbjct: 310 KKQD 313 >gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 307 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V R+ I+D+ HP Sbjct: 253 HGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHP 305 >gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis] gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis] Length = 117 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++Q HP Sbjct: 61 SPHTLRHAFATHLLNHGADLRVVQLLLGHADLSTTQIYTHVAQARLKSLHEQHHP 115 >gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] Length = 322 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 258 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDNAHP 310 >gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434] gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434] Length = 167 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 113 HGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRAVYEQAFP 165 >gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL G DLR +Q +LGH+ +STT+ YT+V R+ E+Y HP Sbjct: 238 TPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHP 292 >gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] Length = 222 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 164 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 218 >gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 271 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328 >gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] Length = 297 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 300 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V + R+ ++ ++ HP Sbjct: 241 SPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLTQVVNRHHP 295 >gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] Length = 306 Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVANHHP 299 >gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] Length = 291 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFA HL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 235 TPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHP 289 >gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] Length = 317 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD HP Sbjct: 255 SVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAK 314 Query: 62 QK 63 +K Sbjct: 315 RK 316 >gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment'] Length = 295 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +Y++ HP Sbjct: 239 TPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAHLKTVYNRYHP 293 >gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] Length = 321 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++++ HP Sbjct: 265 SPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTRLADLHEKHHP 319 >gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 299 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] Length = 301 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVAAHHP 299 >gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304 >gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771] Length = 140 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 77 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 136 Query: 64 DK 65 K Sbjct: 137 KK 138 >gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] Length = 300 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP Sbjct: 244 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHP 298 >gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304 >gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223] gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] Length = 297 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ + HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARERLKQLHARHHP 295 >gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] Length = 284 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 228 TPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQQLHSRHHP 282 >gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431] Length = 282 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 224 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 276 >gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str. 'morsitans'] gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 299 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ I+ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKLIHQQHHP 297 >gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] Length = 339 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AH LRHS ATHL+ G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP Sbjct: 284 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYTRAHP 337 >gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] Length = 298 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS ATH++ G DLR +Q +LGHS L TTQIYT+V+++R+ +YD+ HP Sbjct: 242 SPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLKNVYDRAHP 296 >gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] Length = 391 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H++RHSFATHL+ G D+R +Q +LGH+ ++TTQ+YT V + M+E+Y HP Sbjct: 331 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHP 385 >gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] Length = 307 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP ++D Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKRD 307 >gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304 >gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] Length = 304 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 46/60 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD HP ++ + Sbjct: 244 HMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQHLAKVYDAAHPRAKRRKR 303 >gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] Length = 308 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHP 306 >gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] Length = 324 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 252 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHP 306 >gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] Length = 315 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L NG DLRS+Q +LGH+ +STT YT+V+ R+M YD+ HP Sbjct: 256 SPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHP 310 >gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB] gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB] Length = 301 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 241 HKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 293 >gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism] Length = 323 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM + + Q HP Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKLRMKQQHAQHHP 321 >gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As] Length = 340 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD HP +K Sbjct: 282 HMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARKK 339 >gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] Length = 305 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL G DLRS+Q +LGHS + TQIYT+V+ + E++ HP Sbjct: 247 SISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVDRAFIKEVHKSFHP 303 >gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM 4136] Length = 297 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL NG DLR IQ +LGH+ ++TTQIYT+V+ KR+ + + + HP Sbjct: 243 HLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKRLKDTHRKFHP 295 >gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627] gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627] Length = 298 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 307 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ I+ Q HP Sbjct: 247 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHP 304 >gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 310 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 46/61 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FATHLL N +R++Q +LGH LSTTQIYT+V+++R+ ++YD HP +K Sbjct: 250 TPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDACHPHGRKK 309 Query: 64 D 64 + Sbjct: 310 E 310 >gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505] gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505] Length = 311 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 253 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 307 >gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586] gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 314 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 258 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHP 312 >gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395] gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395] gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395] gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] Length = 307 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP ++D Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDQAHPRAKKRD 307 >gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 309 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 253 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 307 >gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] Length = 336 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL++G DL S+ +LGHS LSTT+IYT+V R+ E+Y + HP Sbjct: 282 HILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLKEVYRKAHP 334 >gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 305 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH ATHLL G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHP 303 >gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724] gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724] Length = 300 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 46/63 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH+FATHLL G DLR +Q +LGH R+STTQIYT++ + ++ Y +HP +K Sbjct: 237 SPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIRRTYTVSHPRAIKK 296 Query: 64 DKK 66 +++ Sbjct: 297 ERE 299 >gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D] gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D] Length = 328 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 271 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328 >gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1] Length = 292 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ IY + HP Sbjct: 236 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQVIYQKHHP 290 >gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 312 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS+A+HLL + GDLR++Q +LGH+++STTQ+YT ++ + + IYD HP +K Sbjct: 254 HMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQHLARIYDAAHPRARRK 311 >gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032] Length = 315 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+ ATHLL G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHP 313 >gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032] Length = 308 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+ ATHLL G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP Sbjct: 252 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHP 306 >gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 260 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLLSNG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y THP Sbjct: 206 HMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTNEYLRKTYLNTHP 258 >gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15] Length = 300 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHP 298 >gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149] gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149] Length = 340 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRHS ATHLL G DLR++Q +LGHS L++TQIYT+V+ +R+ Y Q HP Sbjct: 283 TTPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHP 338 >gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587] gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594] gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594] Length = 306 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V++ R++ + ++ HP Sbjct: 233 SPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAARLVALVNERHP 287 >gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] Length = 297 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S HTLRHSFA+HLL G DLRS+Q +LGHS +STTQIYT+V + + + +++ HP Sbjct: 240 SIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRHLKDAHEKFHP 296 >gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863] gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v] Length = 298 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 299 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18] gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18] Length = 422 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ AH LRHS ATHL+ G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP Sbjct: 364 ASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHP 420 >gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae NTUH-K2044] gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] Length = 298 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 318 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R++Q +LGH+ ++TTQIYT V++ + E+Y HP Sbjct: 262 HTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHP 314 >gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 305 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHSFATHLL NG DLR +Q +LGH+ LSTTQIY +V R+ Y+ HP Sbjct: 246 HMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHAHP 298 >gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341] gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300 >gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 307 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL+N ++R +Q +LGH +STTQ YT+V + R+ E+Y++ HP Sbjct: 250 SPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTNDRLFEVYNRAHP 304 >gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri 93-146] gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146] Length = 300 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 241 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHP 293 >gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J] gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J] Length = 328 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP +K Sbjct: 271 HVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328 >gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5] gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5] Length = 352 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATHLL G DLR++Q +LGHS L++TQIYT+V+ +R+ Y Q HP Sbjct: 296 TPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHP 350 >gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] Length = 309 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG DL+ IQ +LGH+ +++TQ+Y N+ + R +Y+ HP Sbjct: 250 TPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNRFQNVYNHCHP 304 >gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL G DLR +Q +LGH+ +STT+ YT+V R+ E+Y HP Sbjct: 238 TPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHP 292 >gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 46/60 (76%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP +KD+ Sbjct: 239 HKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDNAHPR-AKKDR 297 >gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] Length = 310 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH FATH+LS G D+R +Q +LGH+ ++TTQIYT+V++ + E+Y +HP Sbjct: 250 SVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALREVYASSHP 306 >gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7] gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7] Length = 304 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT+RHSFATHLL+ G D+R++Q +LGH LSTTQIYT+++ + E+Y + HP Sbjct: 247 PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHP 300 >gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFA H+L GD+R++Q +LGH R+STTQIYT ++ +++ ++YD+ HP Sbjct: 231 TPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQLSKVYDRAHP 285 >gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 261 HKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHP 313 >gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] Length = 295 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 239 SPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQARLEALHAQHHP 293 >gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] Length = 324 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ HP Sbjct: 252 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLDNHP 306 >gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295 >gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514] gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514] Length = 306 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL +G DLR IQ +LGH+ +STT+IYT+V+ R+ E++ + HP Sbjct: 248 NVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRKFHP 304 >gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei BCC215] Length = 310 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 252 HVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD 310 >gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] Length = 276 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 217 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 269 >gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT+RHSFATHLL+ G D+R++Q +LGH LSTTQIYT+++ + E+Y + HP Sbjct: 245 PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHP 298 >gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 293 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V++ R++ + ++ HP Sbjct: 235 SPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHP 289 >gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245] gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245] Length = 337 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL++G DL+S+ +LGHS L+TT+IYT+V R+ E+Y + HP Sbjct: 282 PHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTHVTFSRLSEVYRKAHP 335 >gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar Microtus str. 91001] gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua] gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516] gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides F] gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10] gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola] gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1] gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92] gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516] gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua] gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92] gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F] gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola] gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004] gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038] gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296 >gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296 >gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300 >gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] Length = 305 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHASHHP 303 >gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 304 >gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] Length = 302 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQIYT+V+ ++ E+Y HP Sbjct: 248 HTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHVDQTQLREVYLAAHP 300 >gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ HP Sbjct: 242 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHP 294 >gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 311 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +S HTLRHSFATHLL+ G DLRS+Q +LGHS L TTQIYT+++ + +D+ P Sbjct: 250 VSAKVHTLRHSFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDDDELRLYHDEFFP 307 >gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703] Length = 303 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296 >gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL G LR++Q +LGH+ L+ TQIYT+V+ R+ +Y Q HP Sbjct: 273 HLLRHTFATHLLDGGAGLRAVQELLGHASLAATQIYTHVSRARLWAVYRQAHP 325 >gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis LMG 19424] gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 349 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+ HP Sbjct: 271 HMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDKAHP 323 >gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans 568] gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568] Length = 299 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 298 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHEQHHP 296 >gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 320 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+F TH+L G DLR+IQ +LGH RLSTTQ YT + ++ +Y++THP Sbjct: 265 HTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEETHP 317 >gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 296 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 46/57 (80%), Gaps = 2/57 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN--SKRMMEIYDQTHP 58 T H LRHSFA HL+ NG +L+S+Q +LGHS +STTQ+Y ++N ++ +M++Y++THP Sbjct: 238 TPHMLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMHLNKETEELMDVYNKTHP 294 >gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens] Length = 303 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 296 >gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217] gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217] Length = 323 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V R+ + + HP Sbjct: 251 TPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEARLQALVQEHHP 305 >gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21] gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21] Length = 331 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/57 (59%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +YD+ S Sbjct: 275 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYDRAKLS 331 >gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] Length = 323 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V R+ E+Y +HP Sbjct: 258 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHP 312 >gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99] gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99] Length = 308 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 47/67 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294 Query: 61 TQKDKKN 67 ++ K N Sbjct: 295 SRAKKLN 301 >gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa Temecula1] gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23] gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1] gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23] gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp. fastidiosa GB514] Length = 294 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K + Sbjct: 235 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 294 >gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 301] gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae Sd197] gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185] gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50] gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718] gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli BL21(DE3)] gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017] gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185] gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1] gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489] gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007] gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718] gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70] gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671] gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71] gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71] gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6] gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218] gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272] gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227] gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304] Length = 298 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] Length = 296 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP ++ K Sbjct: 232 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRRSK 291 Query: 66 KN 67 + Sbjct: 292 DD 293 >gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 32953] gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 296 >gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] Length = 276 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 217 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 269 >gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] Length = 299 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRH+FATH+L G DLR++Q +LGH LS TQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSKERLRSVYMKHHP 297 >gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] Length = 301 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G D+R +Q +LGH+ +STTQIYT V ++ E+Y +HP Sbjct: 246 HTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVTVDKLREVYATSHP 298 >gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] Length = 299 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] Length = 316 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/52 (63%), Positives = 40/52 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +YD Sbjct: 245 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYD 296 >gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 308 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q +LGH+ LSTTQIYT+V+ +R+ Y+Q P Sbjct: 254 HGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQAFP 306 >gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] Length = 310 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/54 (59%), Positives = 43/54 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT+RHSFATHLL G D+R +Q +LGHS LSTTQIYT+V+ + + E+Y++T P Sbjct: 240 PHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEHLREVYNRTCP 293 >gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 305 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ I+ Q HP Sbjct: 246 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHP 303 >gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718] gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] Length = 252 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 196 SPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATERLKQLHQRHHP 250 >gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] Length = 304 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 245 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 297 >gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22] gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45] gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45] Length = 308 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V +R+ E+ HP Sbjct: 250 TPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLKELVLDHHP 304 >gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] Length = 305 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 301 >gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36] gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36] Length = 296 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V + R+ +++ + HP Sbjct: 240 SPHTLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATARLEQLHSEHHP 294 >gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 312 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YD HP +K Sbjct: 248 HMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQHLAKVYDTAHPRAVRKKP 307 Query: 66 KN 67 K Sbjct: 308 KE 309 >gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2] Length = 319 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLR IQ +LGHS +S+TQIYT+V+ +R+ E Y Q HP Sbjct: 265 HGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQETYRQAHP 317 >gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium diphtheriae NCTC 13129] gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae] Length = 302 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL NG DLR +Q +LGHS L+TTQIYT+V+++R+ E Y HP Sbjct: 244 HALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQRLKEAYKNAHP 296 >gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 309 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 33/53 (62%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L G DLR+IQ ILGHS +STTQIY +V+ + E Y HP Sbjct: 251 HTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHP 303 >gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 302 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL N DL+S+Q +LGH +STTQIYT++ +K + E++ + HP Sbjct: 245 VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHP 300 >gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ +STTQ+YT+V ++R+ E+ + HP Sbjct: 243 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHP 297 >gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019] gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS+A+HLL + GDLR++Q +LGH+ +STTQ+YT ++ + + YD HP +K Sbjct: 251 HMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLDFQHLARAYDAAHPRAKRK 308 >gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614] gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614] Length = 312 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q +LGH+ L+TTQIYT+V+++R+ Y Q HP Sbjct: 258 HGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHP 310 >gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 309 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V ++R+ I+ Q HP Sbjct: 249 AVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRGIHHQFHP 305 >gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] Length = 327 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ ++ + HP Sbjct: 255 TPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLERHP 309 >gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2] gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2] Length = 305 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP Sbjct: 247 HKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHP 299 >gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLLS G DLR+IQ +LGHS LSTT+ YT+++ + + E Y + HP Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHP 294 >gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] Length = 356 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AH LRHS ATHL+ G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP Sbjct: 301 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYIRAHP 354 >gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu] Length = 306 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM 10152] gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 307 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ +R+ +++DQ HP Sbjct: 253 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSIERLKKVHDQAHP 305 >gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280] gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143] gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] Length = 306 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHAAHHP 304 >gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 310 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + HTLRH+FATHLL+N ++R +Q +LGH ++TTQ YT+V + R+ E+Y++ HP Sbjct: 248 MDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNRFHP 305 >gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21] gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21] Length = 299 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ +++ Y HP Sbjct: 238 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLDTYRNAHP 294 >gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536] gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905] gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82] gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A] gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1] gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A] gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073] gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046] gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227] gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS] gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11] gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ATCC 35469] gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a] gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989] gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39] gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026] gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9] gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B] gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412] gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354] gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088] gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736] gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W] gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9] gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073] gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli] gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Shigella sonnei Ss046] gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227] gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS] gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11] gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1] gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088] gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412] gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354] gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W] gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972] gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1] gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1] gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3] gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83] gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B] gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14] gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010] gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68] gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180] gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357] gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11] gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520] gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482] gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120] gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3] gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253] gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167] gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74] gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9] gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042] gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] Length = 310 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP +K Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKKK 306 >gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str. 8401] gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] Length = 308 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLKELHGKHHP 306 >gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893] gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893] Length = 310 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ HP Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHP 308 >gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42] gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42] Length = 323 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + +YD HP +K Sbjct: 265 HMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRARRK 322 >gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] Length = 323 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 35/63 (55%), Positives = 48/63 (76%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V R+ E+ HP + Q Sbjct: 251 TPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHP-LAQD 309 Query: 64 DKK 66 D + Sbjct: 310 DTR 312 >gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 336 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL++G DL S+ +LGHS LSTT+IYT+V +R+ E+Y + HP Sbjct: 281 PHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVTFERLKEVYRKAHP 334 >gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium EB000_37G09] Length = 302 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRHSFATHLL+ G DLRS+Q +LGH+ ++TTQIYT R+ + HP + + Sbjct: 239 VSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYTRTRQDRLAGLVSDAHP-LAE 297 Query: 63 KDKKN 67 D+K Sbjct: 298 SDRKE 302 >gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] Length = 316 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 260 SPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVARLRLKQLHAQHHP 314 >gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] Length = 313 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGH+ +STTQIYT+++ + + ++YD+ HP +K Sbjct: 245 HMLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAGRK 302 >gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627] gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627] Length = 298 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans 621H] gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC [Gluconobacter oxydans 621H] Length = 321 Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHL+ G DLR+IQ ++GH+ LSTTQ YT + K +++++ + HP Sbjct: 259 SATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLADEKHLLDVWRKAHPRAG 318 Query: 62 QK 63 Q+ Sbjct: 319 QE 320 >gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233] gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 336 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q +LGH+ L+TTQIYT+V+++R+ IY Q HP Sbjct: 282 HGLRHTAATHLLEGGADLRTVQELLGHASLATTQIYTHVSTERLAAIYRQAHP 334 >gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3] Length = 77 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 14 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 73 Query: 64 DK 65 K Sbjct: 74 KK 75 >gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec] gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec] Length = 383 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V + E+Y +HP Sbjct: 278 SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTMDHLREVYASSHP 332 >gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383] gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383] Length = 306 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] Length = 302 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G DLRS+Q +LGH +STTQ+YT+V+ + ++Y + HP Sbjct: 242 HTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVYLEAHP 294 >gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 249 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 303 >gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60] Length = 303 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHP 296 >gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC 8739] gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V +R+ +++ + HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQRLQDLHAKHHP 296 >gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto Rico] Length = 312 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQ+YT+++ ++E Y HP Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 306 Query: 62 QKD 64 +K+ Sbjct: 307 KKN 309 >gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia J2315] gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315] Length = 306 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 45/59 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP ++D Sbjct: 248 HVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKKRD 306 >gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis] gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 313 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 257 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHP 311 >gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] Length = 305 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/55 (60%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHATHHP 303 >gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHP 296 >gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 311 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307 >gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] Length = 312 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 256 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHP 310 >gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 49/62 (79%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH+FA+HLL+NG DLR++Q +LGH+ +STTQIYT+V +R+ E+ QTH + +K Sbjct: 257 SPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDERLKELV-QTHHPLAKK 315 Query: 64 DK 65 K Sbjct: 316 GK 317 >gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602] gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602] Length = 319 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 317 >gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] Length = 297 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKFHP 295 >gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 306 >gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169] gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1] gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1] gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1] gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8] gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72] gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E] gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHP 305 >gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] Length = 316 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQ+YT+++ ++E Y HP Sbjct: 251 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 310 Query: 62 QKD 64 +K+ Sbjct: 311 KKN 313 >gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHP 305 >gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] Length = 302 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 241 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 298 >gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7] gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] Length = 292 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY++++ K ++ E+Y ++HP Sbjct: 236 AFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIAEVYKKSHP 290 >gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209] gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +T+ H LRH+ ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ Y Q HP Sbjct: 250 ATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRSSYQQAHP 306 >gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] Length = 292 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RHSFA+HL++NG DL+++Q +LGH+ +STTQIY N R+ E Y + HP Sbjct: 236 TPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIYLNSKQSRLKEEYQKAHP 290 >gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGQHHP 297 >gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha proteobacterium EBAC2C11] Length = 315 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L+ G DLRS+QS+LGH+ +STTQIYT+ +R+ + HP +Q+ Sbjct: 253 SPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPERLAGLVTSAHPLASQR 312 Query: 64 DKK 66 + Sbjct: 313 QDR 315 >gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans LB400] gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP ++D Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAKKRD 307 >gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 291 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y + HP Sbjct: 233 EITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANIKLKEVYQKAHP 289 >gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K + Sbjct: 218 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 277 >gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q ILGHS L+TTQIYT+V+ +R+ ++ Q HP Sbjct: 254 HGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAVHSQAHP 306 >gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 TLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHP 296 >gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQ+YT ++ +R+ ++YDQ HP Sbjct: 270 HMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHP 322 >gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Virginia] Length = 311 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQ+YT+++ ++E Y HP Sbjct: 246 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 305 Query: 62 QKD 64 +K+ Sbjct: 306 KKN 308 >gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327] gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ECD227] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum STM815] gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + IYDQ HP ++D Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLDFQHLARIYDQAHPRAKKRD 307 >gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] Length = 305 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++ Q HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHP 303 >gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHP 305 >gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQ+YT V M E+Y +HP Sbjct: 250 SPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNTMREVYATSHP 304 >gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] Length = 305 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++ Q HP Sbjct: 247 TLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHP 303 >gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ AH LRHS ATHL+ G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP Sbjct: 300 ASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHP 356 >gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12] gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12] Length = 277 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K + Sbjct: 218 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 277 >gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K + Sbjct: 218 HMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARRKAR 277 >gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R++Q +LGH+ ++TTQIYT V++ + E+Y HP Sbjct: 253 HTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHP 305 >gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] Length = 296 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP ++ K Sbjct: 232 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRRSK 291 >gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1] gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1] Length = 299 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 45/66 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + + ++YD HP Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 61 TQKDKK 66 ++ K Sbjct: 294 KKQQDK 299 >gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 EDL933] gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4024] gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14359] gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966] gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Escherichia coli O157:H7 str. EDL933] gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli] gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli] gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli] gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli] gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli] gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212] gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. G5101] gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. 493-89] gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. H 2687] gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. USDA 5905] gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. LSU-61] gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125] gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] Length = 306 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V +R+ ++ Q HP Sbjct: 245 TPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQRLTDLVLQHHP 299 >gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + + ++ + HP Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDEHLKDLVLRHHP 307 >gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661] gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661] Length = 297 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 295 >gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 328 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATHLL G DLR +Q +LGHS LSTTQIYT+V+ + ++Y +HP +++ Sbjct: 268 PHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQARKVYLSSHPLAKEQE 327 Query: 65 K 65 + Sbjct: 328 R 328 >gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 299 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS+A+HLL +G +R+IQ +LGHS L+ TQIYT ++ R+ E+YD+ HP Sbjct: 248 SPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFARLAEVYDRAHP 302 >gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] Length = 307 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 248 VSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLTQLVESAHP 303 >gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 304 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 245 HKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLTKVYDVAHP 297 >gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] Length = 300 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHP 298 >gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum GMI1000] gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306 >gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] Length = 317 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L G DLRS+Q +LGH+ LSTTQ+Y + M E+Y++ HP Sbjct: 249 TPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARRNMKEVYEKHHP 303 >gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 298 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL N DL+S+Q +LGH +STTQIYT++ +K + E++ + HP Sbjct: 241 VTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHP 296 >gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] Length = 315 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + DLR++Q +LGHS++STTQ+YT ++ + + E YD+ HP +K + Sbjct: 255 HVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTRLDFQHLSEAYDKAHPRAKKKPR 314 >gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae WSM419] gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419] Length = 313 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 248 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQSHHPLAK 307 Query: 62 QKDKKN 67 Q K++ Sbjct: 308 QAKKQD 313 >gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] Length = 378 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + GDLR++Q +LGH+ +++TQ+YT ++ + + +YD THP Sbjct: 279 HMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQHLARVYDATHP 331 >gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR++Q++LGH+ ++TT+IYT+V + +++E+ + HP + Sbjct: 236 SPHVLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHVEATQLVELVNARHPLV 292 >gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89] gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88] gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605] gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89] gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15] gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034] gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146] gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3] gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1] gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252] gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263] gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86] gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2] gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa UCBPP-PA14] gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa LESB58] gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAb1] gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016] gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14] gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58] gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016] Length = 303 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 >gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] Length = 326 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL++G DLR++Q +LGH+ LSTTQIYT V + + ++ + HP Sbjct: 268 TVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREHLQRLHARHHP 324 >gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 300 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHP 298 >gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103] gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103] Length = 297 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 295 >gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12] gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12] Length = 336 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD HP +K Sbjct: 278 HMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARKK 335 >gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 294 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLRS+Q +LGH+ +S T+IYT+V + R+ I++ HP Sbjct: 232 SPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHP 286 >gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39] gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y Q HP Sbjct: 266 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQALREVYAQAHP 320 >gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHL+++G DLR +Q +LGHS L+TTQIYT+V RM +++ Q HP Sbjct: 243 SPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVARHRMQQLHAQHHP 297 >gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 301] gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89] gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88] gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89] gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034] gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146] gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3] gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252] gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263] gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70] gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671] gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71] gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71] gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218] gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152] Length = 385 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/51 (64%), Positives = 40/51 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHS+ATHLL NG D+R IQS+LGHSR TT IYT+V K +M+I Sbjct: 308 AVTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKDLMQI 358 >gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12] gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12] Length = 305 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 303 >gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] Length = 329 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ YT+V+++R+ ++Y Q P Sbjct: 275 HALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTHVDAERLRQVYTQAFP 327 >gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 297 >gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 297 >gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1] Length = 365 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+ HP Sbjct: 285 HVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYENAHP 337 >gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct] Length = 304 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 >gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145] gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145] Length = 301 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V +R+ +++ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKERLQQMHATFHP 299 >gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] Length = 309 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKQLHSQHHP 307 >gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073] gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046] gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227] gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae Sd197] gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536] gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str. 8401] gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A] gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11] gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22] gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4024] gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11] gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6 str. E2348/69] gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1] gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a] gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989] gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14359] gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9] gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B] gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. FRIK966] gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354] gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185] gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088] gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50] gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736] gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W] gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9] gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073] gi|147548|gb|AAA62787.1| xprB [Escherichia coli] gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli] gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046] gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227] gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536] gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401] gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A] gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11] gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22] gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli] gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli] gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli] gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli] gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11] gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82] gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli BL21(DE3)] gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1] gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15] gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042] gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088] gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185] gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354] gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W] gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU 83972] gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1 str. NRG 857C] gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1] gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1] gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1] gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3] gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431] gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112] gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905] gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83] gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212] gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327] gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B] gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. G5101] gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. 493-89] gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. H 2687] gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. USDA 5905] gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. LSU-61] gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010] gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G] gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180] gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357] gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1] gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11] gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520] gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482] gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120] gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489] gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863] gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007] gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509] gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2] gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1] gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167] gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227] gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125] gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v] gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86] gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74] gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74] gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9] gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88] gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] Length = 304 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 302 >gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134] gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134] Length = 339 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ ++TTQIYT+++ + + ++YD+ HP Sbjct: 267 HMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYTSLDFQHLAKVYDKAHP 319 >gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37] gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37] Length = 311 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ ++ HP Sbjct: 253 TPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRDLVLDHHP 307 >gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 296 >gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 313 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 5/67 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-----SI 60 H RHSFATHLL G D+R++Q +LGH+ LSTT IYT+V+ KR+ ++Y HP S+ Sbjct: 247 HLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHVSLKRLQDVYRNAHPHGSTGSV 306 Query: 61 TQKDKKN 67 +K++K+ Sbjct: 307 GKKEQKS 313 >gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + + +Q HP Sbjct: 240 SISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSDLARVMEQYHP 296 >gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b] gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b] Length = 297 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 295 >gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] Length = 345 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLR +Q +LGHS +STTQIYT+++ + ++YD+ HP Sbjct: 288 PHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHP 341 >gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD HP +K Sbjct: 241 HLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLAKIYDGAHPRAKKK 298 >gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLR IQ ILGH ++TT+IY +V+ + E+ + HP Sbjct: 242 SPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVDKTYLKEVVETFHP 296 >gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] Length = 320 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 50/63 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP T Sbjct: 254 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATPP 313 Query: 64 DKK 66 ++ Sbjct: 314 GRR 316 >gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] Length = 295 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQARLTELHREHHP 294 >gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] Length = 302 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300 >gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] Length = 313 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ HP Sbjct: 252 TPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDERLKELVLDHHP 306 >gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group] Length = 752 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 696 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 750 >gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia succiniciproducens MBEL55E] gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 240 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKYHP 296 >gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + + +YD HP ++ Sbjct: 240 HKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHPRAKRR 297 >gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] Length = 306 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H +RHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + + YD HP ++ Sbjct: 245 HMMRHSFASHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQHLAKTYDAAHPRAKRQKG 304 Query: 66 K 66 K Sbjct: 305 K 305 >gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] Length = 312 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V ++R+ ++ Q HP Sbjct: 252 SISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLHALHRQFHP 308 >gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica Y11] gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703] Length = 299 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 297 >gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] Length = 301 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 243 SLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHP 299 >gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC 11218] Length = 302 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300 >gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2] gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2] Length = 297 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR++Q +LGHS LSTTQIYT+V +R+ I+ Q HP Sbjct: 241 SPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHVAKERLQSIHHQHHP 295 >gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 307 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V + E+Y HP Sbjct: 249 SPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHP 303 >gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] Length = 303 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 >gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] Length = 302 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300 >gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 319 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 45/64 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 256 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLHQLVQMHHPLAKQG 315 Query: 64 DKKN 67 K+ Sbjct: 316 KKQE 319 >gi|167946419|ref|ZP_02533493.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 71 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 15 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLKALHAKHHP 69 >gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31] gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31] Length = 306 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ ++ Y + HP Sbjct: 250 TPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAAGLLAAYGKAHP 304 >gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] Length = 312 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+FATHLL+ G DLRSIQ++LGH+ +STT+IYT+V +R+ ++ HP Sbjct: 254 VTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDERLKQLVLDHHP 309 >gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LS+TQIYT+++ + + ++YD HP Sbjct: 244 HKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQHLTKVYDVAHP 296 >gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi 35000HP] gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP] Length = 297 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ I+ Q HP Sbjct: 241 SPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTRLKSIHKQFHP 295 >gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica] Length = 303 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 301 >gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] Length = 296 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL++G DLR++Q +LGH+ +STT+IYT+V + R+ +++DQ HP Sbjct: 240 SPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHP 294 >gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] Length = 302 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300 >gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii ATCC 35469] gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 EDL933] gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. Sakai] gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933] gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai] gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli] gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] Length = 308 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306 >gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 309 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHS+ATHLL G DLRS+Q +LGHS + TTQIYT+V++ + E + + HP Sbjct: 240 VEAKVHTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHVDTTDLQEQFRRFHPDA 299 Query: 61 TQKDKKN 67 Q + + Sbjct: 300 GQSENEQ 306 >gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 306 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 252 HGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFP 304 >gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHP 300 >gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 311 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307 >gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] Length = 346 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q +LGH+ L TTQ+YT+V+ R+ E Y Q HP Sbjct: 292 HALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHP 344 >gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] Length = 315 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 43/61 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL G DLRSIQ++LGH+ + TT+IYT+V R+ + HP + + Sbjct: 252 TPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRALVLDHHPLVQPR 311 Query: 64 D 64 D Sbjct: 312 D 312 >gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium] Length = 320 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT ++ + + + YD HP ++ Sbjct: 263 HMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLAQAYDAAHPRARKR 320 >gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] Length = 302 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FAT +L+NG DLRS+Q +LGH LSTTQIYT+V +R+ + Y++ P KD Sbjct: 244 HELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNEGKD 302 >gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13] gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13] Length = 295 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGHS +STTQIYT+++ + + +IYDQ HP +K Sbjct: 235 PHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSKKK 293 >gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 301 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ HTLRHSFATH+L G D+R +Q +LGH L+TTQ+YT+V ++R+ + Y + HP Sbjct: 244 TSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQRLQQSYQKAHP 299 >gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti MAFF303099] gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099] Length = 305 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + + HP Sbjct: 248 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHP 302 >gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] Length = 290 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQ 62 + H LRH FA+HLL+ G DLRS+Q +LGH ++TTQIYT+V S+R+ + D HP SIT Sbjct: 229 SPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSERLRALLDTCHPLSITA 288 Query: 63 KD 64 +D Sbjct: 289 ED 290 >gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] Length = 296 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHL+++G DLR +Q +LGHS +STTQIYT+V +R+ +++Q HP Sbjct: 240 SPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARERLRRLHEQHHP 294 >gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272] gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227] Length = 298 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026] gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412] gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412] gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] Length = 298 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 298 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104] gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104] Length = 301 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 247 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 >gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 301 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 247 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 >gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3] Length = 298 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 404 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHS ATHLL+ G DLRS+Q LGH+ +TTQIYT+V +R+ ++Q+HP Sbjct: 348 SPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTHVTPQRLRAAFEQSHP 402 >gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 318 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V ++R+ ++ Q HP Sbjct: 262 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATERLKMLHQQHHP 316 >gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] Length = 310 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP ++ Sbjct: 247 SPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKKR 306 Query: 64 DKK 66 K Sbjct: 307 SNK 309 >gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] Length = 286 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 230 SPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARERLKQLHARHHP 284 >gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] Length = 301 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT LL+NG DLR++Q +LGHS LSTTQIYT+V +++ E Y + P Sbjct: 244 HMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFP 296 >gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 296 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/54 (59%), Positives = 41/54 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 M H LRHSFATHLL NG LR +Q++LGH LSTTQIYT+V+ +++ E+YD Sbjct: 234 MKLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYD 287 >gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] Length = 356 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL +G DLR++Q +LGH+ ++TTQIYT+V++ R+ I+ + HP Sbjct: 300 SPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTHVDTNRLKAIHRKFHP 354 >gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] Length = 309 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL+ G DLR IQ +LGH+ ++TTQIYT+V + R +D+ HP Sbjct: 246 HMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEADRTRSAHDEFHP 298 >gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+LRHS ATHL+ G D+R +Q +LGHS ++TTQIYT V S+ + E+Y THP Sbjct: 255 TAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQALKEVYASTHP 309 >gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida subsp. multocida str. Pm70] gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70] Length = 297 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHP 295 >gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] Length = 308 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ + HP Sbjct: 252 SPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHP 306 >gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295 >gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] Length = 311 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ ++ HP Q K Sbjct: 250 HVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAKQAKK 309 Query: 66 KN 67 ++ Sbjct: 310 QD 311 >gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] Length = 299 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC 23330] Length = 302 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFA HLL DLR++Q +LGHS LS+TQIYT ++ + ++YDQ HP Sbjct: 235 TPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLDLDHLAQVYDQAHP 289 >gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 308 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306 >gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 292 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RH+ ATHLL G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+ Y Q HP Sbjct: 238 HGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIERLRAAYRQAHP 290 >gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] Length = 311 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307 >gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS] gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS] Length = 298 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAO1] gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1] gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] Length = 303 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 >gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] Length = 321 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S ++E + HP + Sbjct: 262 PVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVASDALIEKFHTFHPRL 320 >gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 308 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 306 >gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 311 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 309 >gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 325 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q +LGH+ L+TTQ+YT+V +R+ I+D+THP Sbjct: 271 HGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTVERLKAIHDRTHP 323 >gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 303 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHP 296 >gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] Length = 305 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + + HP Sbjct: 248 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHP 302 >gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] Length = 346 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + EIY HP Sbjct: 288 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHP 342 >gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3] gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3] Length = 385 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATH+L G DLRS+Q LGH+ L+TTQIYT+V +R+ ++Q HP Sbjct: 329 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHP 383 >gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 296 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K Sbjct: 238 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRK 295 >gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 298 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC BAA-894] gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894] Length = 319 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 317 >gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] Length = 298 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 295 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 47/58 (81%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G DLRS+Q++LGH+ +++TQIYT+V+ + +++++ + HP Sbjct: 236 IKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHP 293 >gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] Length = 300 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHP 298 >gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638] gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638] Length = 298 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] Length = 315 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+++++ + HP Sbjct: 258 TPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHP 312 >gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] Length = 298 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] Length = 264 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 208 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 262 >gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72] Length = 331 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320 >gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] Length = 438 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + +ME+Y HP ++ Sbjct: 378 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 437 >gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] Length = 301 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R++Q +LGH+ ++TTQIYT++ + + E++ HP Sbjct: 245 SPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADNLREVWRMAHP 299 >gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31] gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31] Length = 308 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHLL G DLR IQ++LGH+ ++TTQIYT+V + E+ HP Sbjct: 248 TVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGDHLAEVVKSKHP 304 >gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] Length = 307 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V M E++ Q HP Sbjct: 250 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTAMREVWAQAHP 304 >gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 383 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 320 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQA 379 Query: 64 DK 65 K Sbjct: 380 KK 381 >gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8] Length = 331 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320 >gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 327 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R++Q +LGH+ ++TTQIYT V + + E+Y HP Sbjct: 262 HTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTNDMIREVYASAHP 314 >gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] Length = 311 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS+ATHLL+ G D+R +Q +LGH+ ++TTQ+YT V ++ + E+Y HP Sbjct: 253 SPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQTLREVYAAAHP 307 >gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] Length = 300 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT+V R+ ++ + HP Sbjct: 242 SLSPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHAEHHP 298 >gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] Length = 336 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH++ G D+RS+Q +LGH+ L+TTQ+YT+V+ +R+ E +D++HP Sbjct: 282 HGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHVSVERLREAFDRSHP 334 >gi|325520789|gb|EGC99801.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49] Length = 70 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 14 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 68 >gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] Length = 303 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 296 >gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] Length = 302 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FAT +L+NG DLRS+Q +LGH LSTTQIYT+V +R+ + Y++ P KD Sbjct: 244 HELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNKGKD 302 >gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] Length = 323 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V R+ + + HP Sbjct: 251 TPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQALVQEHHP 305 >gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430] gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430] Length = 302 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 295 >gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] Length = 298 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72] gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72] Length = 303 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + IYD HP Sbjct: 247 HMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQHLARIYDAAHP 299 >gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] Length = 305 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301 >gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 294 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL G LR +Q +LGH L TTQ Y ++ S +M Y+Q HP Sbjct: 236 TPHTLRHSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITSDQMKRSYEQAHP 290 >gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] Length = 290 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 46/57 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H+LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V ++R+ I Q HP Sbjct: 232 SLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANERLKSIVQQHHP 288 >gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRH++ATHLL G DLR IQ +LGHS + TT+IYT+V ++++ E Y HP Sbjct: 238 TPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHP 292 >gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] Length = 299 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 299 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017] Length = 273 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 217 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 271 >gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] Length = 306 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQRLQSLHQEHHP 304 >gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N] gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N] Length = 311 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 253 TPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHP 307 >gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 323 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+ RHSFATHLL G DLR +Q +LGH ++TTQIYT+V ++R+ E + HP Sbjct: 244 SAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRRLKEAIESYHP 298 >gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] Length = 307 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P +KD+ Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306 >gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica] Length = 303 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 244 HKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQHLTKVYDVAHP 296 >gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 309 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLR++Q +LGH+ ++ T+IYT+V ++R+ I+ Q HP Sbjct: 249 SPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHP 303 >gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] Length = 319 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGH+ L+TTQIYT+V+ +R+ + Y+Q HP Sbjct: 265 HGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVERLRKSYEQAHP 317 >gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] Length = 309 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP +K Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKKK 306 Query: 64 D 64 + Sbjct: 307 E 307 >gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M] gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M] Length = 302 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 300 >gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans 568] gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568] Length = 303 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHP 296 >gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] Length = 291 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD HP +K Sbjct: 234 HMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDAAHPRARKK 291 >gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv. citri str. 306] gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301 >gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7] gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E] Length = 330 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320 >gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] Length = 299 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+ ATHLL G DLR +Q +LGHS L TTQ+YT+V++KR+ + Y + HP Sbjct: 243 TPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKRLKDAYSRAHP 297 >gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1] gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1] gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1] gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1] Length = 330 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHP 320 >gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] Length = 307 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P +KD+ Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306 >gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 304 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 245 HKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDVAHP 297 >gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32] gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32] Length = 310 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S] gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S] Length = 309 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ Q HP Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHP 306 >gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199] gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199] Length = 314 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL +G DLRS+Q +LGH+ +STTQIYT+V ++R+ + + HP Sbjct: 249 SPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETHHP 303 >gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D] gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D] Length = 298 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 296 >gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 309 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ Q HP Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHP 306 >gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii ATCC 12478] Length = 302 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAHP 300 >gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026] Length = 307 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P +KD+ Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306 >gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus IFO 3283-01] gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01] gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-03] gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-07] gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-22] gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-26] gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-32] gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-12] Length = 315 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+++++ + HP Sbjct: 258 TPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHP 312 >gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] Length = 307 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P +KD+ Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306 >gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DLR++Q +LGHS ++ T+IYT+V S R+ +D HP Sbjct: 241 VSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHVQSDRLKSAHDFFHP 296 >gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. 8004] gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. B100] gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 322 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 261 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 318 >gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis z3032] gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032] Length = 298 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 299 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHP 297 >gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323] gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC 33323] gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] Length = 307 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P +KD+ Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306 >gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein [Paenibacillus polymyxa SC2] gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Paenibacillus polymyxa SC2] Length = 314 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L G DLRS+Q +LGH+ L+TTQ+Y + M E+Y+ HP Sbjct: 246 TPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRNMKEVYEMHHP 300 >gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP +K Sbjct: 277 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGRK 334 >gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] Length = 311 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 309 >gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia J2315] gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315] Length = 316 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHP 314 >gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] Length = 302 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATHLL G DLRS+Q +LGH+ +STTQIYT+V R+ ++ HP Sbjct: 246 TPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHP 300 >gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +YDQ HP +K Sbjct: 245 HMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAAVYDQAHPRAKRK 302 >gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] Length = 301 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLRS+Q +LGH+ L+TTQIYT+V ++R+ ++ Q HP Sbjct: 245 SPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANERLKQLVAQHHP 299 >gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 307 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFAT LL NG DLR +Q +LGHS L+ TQ+YT++N ++ EI+ + HP Sbjct: 241 IKISPHKLRHSFATELLGNGADLRMVQEMLGHSSLAATQVYTHINFAKLQEIFSKAHP 298 >gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301 >gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] Length = 295 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL NG DLR IQ +LGH+ +STTQIYT++ +R+ I+ + HP Sbjct: 241 HILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHP 293 >gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT] gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT] Length = 277 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 219 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKRLHQQHHP 275 >gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 298 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFATHLL N DL+S+Q +LGH ++TTQIYT++ +K + E++ + HP Sbjct: 241 VTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHP 296 >gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 299 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V +++ E+Y Q+HP Sbjct: 242 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQLREVYAQSHP 296 >gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] Length = 298 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHP 296 >gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] Length = 296 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +RM ++ HP Sbjct: 240 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERMKRLHAAHHP 294 >gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] Length = 307 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P +KD+ Sbjct: 247 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKDKKDE 306 >gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 267 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 211 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 265 >gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC BAA-895] gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895] Length = 298 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 >gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] Length = 303 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ +++D+ HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQRLKQLHDEHHP 295 >gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ +R+ ++ Q HP Sbjct: 239 SVGPHALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAVHRQAHP 295 >gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + + HP Sbjct: 248 SPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHP 302 >gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont] Length = 303 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ + + +YD HP Sbjct: 243 HKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQHLASVYDAAHP 295 >gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] Length = 307 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 44/59 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP +++ Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAKKRE 307 >gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169] gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1] Length = 330 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 268 HLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGTLTKVYDHAHP 320 >gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] Length = 437 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + +ME+Y HP ++ Sbjct: 377 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 436 >gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum DSM 1728] gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum] Length = 283 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT++N + E+Y Q P Sbjct: 226 VTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHLNDSALREMYTQHRP 281 >gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] Length = 335 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRH+FATHLL G DLR+IQ ++GH+ LS TQ YT+++ + + ++YD HP Sbjct: 259 SVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQALAKVYDAAHPRAQ 318 Query: 62 QKDKK 66 ++ + Sbjct: 319 RRTPR 323 >gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 310 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL DLR++Q +LGH++LSTTQ Y +VN +ME+YD+ HP Sbjct: 254 SPHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVNLDYLMEVYDKAHP 308 >gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] Length = 311 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 252 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHP 304 >gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 346 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 33/63 (52%), Positives = 43/63 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RH+FAT LLS G DLRS+Q +LGHS LSTTQIYT+V+ M Q HP + Sbjct: 282 SPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTHVSIDAMKRAVKQAHPRAEAE 341 Query: 64 DKK 66 K+ Sbjct: 342 TKR 344 >gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 297 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295 >gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus WK1] gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V + +Y +HP Sbjct: 241 LKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDHLRYVYLHSHP 298 >gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 314 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 34/65 (52%), Positives = 48/65 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E + HP Sbjct: 235 NVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLARYHPRGK 294 Query: 62 QKDKK 66 Q D++ Sbjct: 295 QPDRE 299 >gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] Length = 308 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP +K Sbjct: 247 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKKK 306 Query: 64 DK 65 K Sbjct: 307 GK 308 >gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 297 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295 >gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] Length = 301 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL + GDLR++Q +LGH+ + TTQIYT+++ + + YD+ HP +K Sbjct: 241 HMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQHLANTYDKAHPRAKRK 298 >gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 356 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATH+L++G DLR++Q +LGH+ LSTTQIYT+V ++R+ Y + HP Sbjct: 291 SPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHP 345 >gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR +Q +LGH+ +STTQIYT+V+S++++E+ + HP + Sbjct: 244 SPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300 >gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V ++R+ I+ + HP Sbjct: 252 SPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRSIHRKFHP 306 >gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] Length = 321 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 264 SPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYSAAHP 318 >gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM 12804] gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii] Length = 326 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP +K Sbjct: 268 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGRK 325 >gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803] gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803] Length = 298 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ +Q HP Sbjct: 241 VSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSHLRQVMEQFHP 296 >gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] Length = 301 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS A+HLL + GDLR++Q +LGH+ +STTQIYT++N + + E+YD+ HP ++ K Sbjct: 241 HLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQHLAEVYDKAHPRARKRKK 300 >gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200] Length = 302 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP ++ Sbjct: 242 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDSAHPRAKKQQD 301 Query: 66 K 66 K Sbjct: 302 K 302 >gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 298 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL NG DLR+IQ +LGH ++TT++Y +++ K + ++ + HP Sbjct: 240 TISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKHLSQVIENYHP 296 >gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 311 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLRS+Q +LGH+ L+TTQIYT+V +R+ ++ Q HP Sbjct: 257 HGLRHSAATHVLEGGADLRSVQELLGHASLATTQIYTHVTVERLRAVHAQAHP 309 >gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13] gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13] Length = 298 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 240 AISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKDLHQKHHP 296 >gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 297 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKARLKSLHQQFHP 295 >gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii PYR-1] gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1] Length = 319 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 265 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHP 317 >gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510] gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510] Length = 355 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL +G DLRS+Q +LGH+ ++TTQIYT+V ++R+ ++ HP Sbjct: 289 SPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVVTERLRKVMHDHHP 343 >gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] Length = 297 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295 >gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 299 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H++RHSFATHLL+ G DLR +Q +LGH +STTQIYT++ ++ E+Y+ HP Sbjct: 243 SPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHITRDQLKEVYNGAHP 297 >gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 323 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] Length = 307 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ E+ + HP Sbjct: 249 SPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVESAHP 303 >gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2] Length = 315 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ + + E+Y +HP Sbjct: 258 SPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEETLREVYATSHP 312 >gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 166 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/46 (69%), Positives = 37/46 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166 >gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] Length = 303 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FATH+L+ G DLR++Q +LGH+ L TQIYT+V R+ ++Y +HP Sbjct: 245 TPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHP 299 >gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] Length = 299 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGH+ LS+TQIYT ++ + + ++YD HP ++ K Sbjct: 233 HMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARKRGK 292 Query: 66 KN 67 + Sbjct: 293 PD 294 >gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] Length = 310 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP ++ Sbjct: 247 SPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARKR 306 Query: 64 DKK 66 K Sbjct: 307 GNK 309 >gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99] gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99] Length = 308 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 252 SPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHP 306 >gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] Length = 314 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ + HP Sbjct: 250 TPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLKSLVMTHHPLADAA 309 Query: 64 DK 65 D+ Sbjct: 310 DR 311 >gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] Length = 298 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT+RHSFATHLL+ G D+R++Q +LGH L+TTQ+YT+++ + ++Y +THP Sbjct: 244 HTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHISKNHLKKVYMKTHP 296 >gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 206 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHP 260 >gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_001A02] Length = 298 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DLRS+Q +LGH+ ++TTQ+YT+++ + + E++ HP Sbjct: 239 EVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHP 295 >gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] Length = 310 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] Length = 306 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 48/62 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L NG ++ ++ ILGHS L++TQ+YTN N +++ ++++Q HP ++K Sbjct: 244 SPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANIEQLKKVFNQAHPRASKK 303 Query: 64 DK 65 ++ Sbjct: 304 EE 305 >gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4] gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4] gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1] Length = 321 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLRS+Q +LGH+ +S T+IYT+V + R+ I++ HP Sbjct: 259 SPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHP 313 >gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae] Length = 297 Score = 70.5 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 238 HKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDVAHP 290 >gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] Length = 298 Score = 70.5 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQEHHP 296 >gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196] gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC 25196] Length = 318 Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 47/60 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + G+LR++Q +LGH+ +STTQ+YT+++ + + ++YD THP +K + Sbjct: 258 HVLRHSFASHVLQSSGNLRAVQEMLGHASISTTQVYTHLDFQHLSKVYDATHPRARKKKE 317 >gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHP 295 >gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295 >gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] Length = 316 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHP 314 >gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ + HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKQLHSKYHP 295 >gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] Length = 299 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ ++TT+IYT+V+ RM ++ + +HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHP 295 >gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2] Length = 317 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+ ATH+L + GDLR++Q +LGH+ LSTTQIYT ++ + + +YD+ HP +K Sbjct: 257 SPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQHLATVYDKAHPRAKKK 316 >gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 316 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 314 >gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHP 295 >gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. viciae 3841] gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313 Query: 64 DK 65 K Sbjct: 314 KK 315 >gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295 >gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J] gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J] Length = 314 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHP 312 >gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231] gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002] gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19] Length = 293 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H++RH+ ATH+L G DLR +Q +LGHS L+TTQIYT+V+S+R+ E + ++HP Sbjct: 239 HSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQRLKEAFKRSHP 291 >gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 331 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H+LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V ++++ E+Y + P Sbjct: 275 HSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLREVYSSSFP 327 >gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 309 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL+N ++R +Q +LGH ++TTQ YT+V + R+ E+Y++ HP Sbjct: 248 IDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNKFHP 305 >gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia K279a] gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 298 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP Sbjct: 232 HMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHP 284 >gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295 >gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37] gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37] Length = 298 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHP 296 >gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2] Length = 314 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQ+YT+++ ++ EIY HP Sbjct: 258 HTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLDRAQITEIYLGAHP 310 >gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHP 295 >gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] Length = 307 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FAT +L+NG DLR++Q +LGH LSTTQIYT+V + + Y + P ++KDK Sbjct: 245 HELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAHLQDEYQKFFPRNSRKDK 304 Query: 66 K 66 K Sbjct: 305 K 305 >gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 434/Bu] gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2tet1] gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu] gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297 >gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] Length = 328 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + HP Sbjct: 267 SPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLIRLVTDHHP 321 >gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR +Q +LGH+ +STTQIYT+V+S++++E+ + HP + Sbjct: 244 SPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300 >gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus 10329] Length = 310 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295 >gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2] gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/150] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297 >gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 324 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + ++ + HP Sbjct: 265 MRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQTLHRKHHP 322 >gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70] gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297 >gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893] gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893] Length = 317 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 45/53 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YDQ+HP Sbjct: 251 HLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLAKVYDQSHP 303 >gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 303 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+ ++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHP 301 >gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D/UW-3/CX] gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276] gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276s] gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9768] gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11222] gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11074] gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9301] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297 >gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-EC] gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-LC] Length = 308 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 251 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 305 >gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4] Length = 313 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] Length = 310 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae L20] gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHP 295 >gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] Length = 307 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL G DLR++Q++LGH+ +S T+IYT+V ++R++ ++ HP Sbjct: 247 SPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQAERLLAVHRAHHP 301 >gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] Length = 318 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 316 >gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q ILGHS L+TTQ YT+V++ R+ ++Y + HP Sbjct: 245 HGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVDAGRLSDVYRRAHP 297 >gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis A/HAR-13] gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/Jali20/OT] gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/TZ1A828/OT] gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13] gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297 >gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR +Q +LGH+ +STTQIYT+V+S++++E+ + HP + Sbjct: 244 SPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300 >gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38] gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38] Length = 295 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG DL S++ +LGH+ LS+TQIYT+ + + ++Y + HP Sbjct: 238 SPHVLRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHP 292 >gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654] gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654] Length = 315 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH+FATHLL++G DLR+IQ++LGH+ +STT+IYT+V +R+ E+ HP Sbjct: 251 TVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDERLKELVLSHHP 307 >gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] Length = 342 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V R+ ++ Q HP Sbjct: 286 SPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARARLKALHAQHHP 340 >gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 290 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHL+++G DLR +QS+LGH+ +STTQIYT+V ++R+ I + HP Sbjct: 234 SPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANERLKNIVSEHHP 288 >gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] Length = 319 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314 >gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHP 301 >gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] Length = 266 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 263 Query: 64 D 64 + Sbjct: 264 N 264 >gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] Length = 313 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V ++ E+Y +HP Sbjct: 252 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLREVYATSHP 306 >gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 266 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 263 Query: 64 D 64 + Sbjct: 264 N 264 >gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] Length = 301 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA+H+L + GDLRS+Q +LGH L+TTQIYT+++ + + YD+ HP +K Sbjct: 238 HMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQHLARTYDEKHPRAKKK 295 >gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D(s)2923] gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/11023] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHP 297 >gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71] gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71] Length = 312 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 48/60 (80%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQKD 64 H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD +HP + QKD Sbjct: 249 HMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGSHPRARKQKD 308 >gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L+ G DLR++Q +LGH LSTTQIYT+V R+ +Y HP Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHP 298 >gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] Length = 297 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHP 295 >gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 310 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] Length = 300 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L+ G DLR++Q +LGH LSTTQIYT+V R+ +Y HP Sbjct: 244 SPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHP 298 >gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42] Length = 317 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQA 313 Query: 64 DK 65 K Sbjct: 314 KK 315 >gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis G4] gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4] Length = 320 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 318 >gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13] Length = 302 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L+ G DLR +Q +LGH+ LS+TQIYT+V + + + Y+Q HP Sbjct: 246 SPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHVTKEHLQKTYNQFHP 300 >gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] Length = 311 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y THP Sbjct: 253 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATTHP 307 >gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 315 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FA+ LL G DLRS+Q +LGHS LSTTQIYT+V+ +M +++ Q HP Sbjct: 259 TPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHVSIAQMRKVHKQAHP 313 >gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] Length = 297 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHP 295 >gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 299 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHP 297 >gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383] gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383] Length = 316 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHP 314 >gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] Length = 319 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314 >gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis HTE831] gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] Length = 305 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V + E Y ++HP Sbjct: 245 PHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTKDHLREAYMKSHP 298 >gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] Length = 323 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHP 321 >gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] Length = 255 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 3/67 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++T HTLRHS+ATHLL+ G DLRS+Q +LGH+ +STTQIYT++ + +E+Y + Sbjct: 187 INTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDE-LEMYHKEF--F 243 Query: 61 TQKDKKN 67 T+K+K N Sbjct: 244 TEKEKTN 250 >gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN] gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae Br4923] gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae] gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 297 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 243 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHP 295 >gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] Length = 319 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+ ATHLL+ G DLR +Q +LGHS L++TQ+YT+V+++R+ + Y Q HP Sbjct: 265 HTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTHVSTERLAQSYRQAHP 317 >gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 323 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 264 VTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] Length = 307 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ Q HP Sbjct: 250 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTALREVWAQAHP 304 >gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 299 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHP 297 >gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans Agy99] gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99] Length = 302 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 300 >gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] Length = 299 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP T Sbjct: 241 SPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRAT 298 >gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM 20547] Length = 316 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS+ATHL++ G D+R +Q +LGH+ ++TTQIYT V + E++ ++HP Sbjct: 252 SPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTPDHLREVFQESHP 306 >gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 318 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKQLHARHHP 314 >gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44] gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44] Length = 348 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP Sbjct: 273 HVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHP 325 >gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] Length = 309 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT+V + ++Y HP Sbjct: 252 SPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHVTVDALRDVYAGAHP 306 >gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] Length = 299 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHP 297 >gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13] gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13] Length = 309 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] Length = 261 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT+++ + + IYD HP Sbjct: 202 HKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHP 254 >gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314] gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] Length = 304 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT+V ++ + +++ HP Sbjct: 248 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAENLRQVWRSAHP 302 >gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 247 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 303 >gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia solanacearum GMI1000] Length = 347 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 46/59 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ ATH+L G D+R +Q++LGH++L+TT+IYT+V+ + + I+D THP+ Q++ Sbjct: 265 HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHPARLQRE 323 >gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + EIY HP Sbjct: 276 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHP 330 >gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313 Query: 64 DK 65 K Sbjct: 314 KK 315 >gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu] Length = 315 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 259 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAQHHP 313 >gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 280 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH+FAT +L NGGD+R IQ ILGHS L+TTQIYT+++ + E+Y + P Sbjct: 222 NVTPHVLRHTFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDDNTLKEMYSRHMP 278 >gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] Length = 263 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256 >gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 325 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H LRH+ ATHLL G DLR++Q +LGHS L++TQIYT+V+ +R+ Y Q HP Sbjct: 268 TSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYRQAHP 323 >gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 323 Score = 70.1 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 308 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHP 306 >gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. Rev.1] gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3 str. Ether] gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28] gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90] Length = 307 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] Length = 309 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] Length = 261 Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT+++ + + IYD HP Sbjct: 202 HKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHP 254 >gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 70.1 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 45/58 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQIYT+++ +R+ ++YD HP +K Sbjct: 260 HVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQRLAQVYDAAHPRAKKK 317 >gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] Length = 263 Score = 70.1 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256 >gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] Length = 304 Score = 70.1 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP ++ Sbjct: 243 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDNAHPRAKKRGD 302 Query: 66 K 66 K Sbjct: 303 K 303 >gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271] gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271] Length = 335 Score = 70.1 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L++G DL+S+ +LGH+ L+TT+IYT+V R+ E+Y + HP Sbjct: 281 HVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHVTFGRIKEVYLKAHP 333 >gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] Length = 318 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 44/63 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FATHLL G DLR IQ++LGH+ LSTT+IYT+V +R+ ++ HP + Sbjct: 255 TPHVLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHVLEERLKDLVLGHHPLARRA 314 Query: 64 DKK 66 D + Sbjct: 315 DPQ 317 >gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] Length = 311 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 252 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLASVYDVAHP 304 >gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] Length = 301 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL +G DLR +Q +LGHS LSTTQIYT+V R+ ++ + HP Sbjct: 245 SPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVARARLQSLHAEHHP 299 >gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] Length = 309 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 324 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + YDQ HP +K Sbjct: 266 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGRK 323 >gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] Length = 263 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256 >gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] Length = 309 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 250 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHP 302 >gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] Length = 294 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLR++Q +LGH+ ++TTQIYT V +R+ +I + HP Sbjct: 234 SPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEERLRQIVETHHP 288 >gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. 16M] gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M] gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] Length = 309 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 279 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHP 335 >gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT 652] gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 383 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 320 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 379 Query: 64 DK 65 K Sbjct: 380 KK 381 >gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 308 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHP 306 >gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 317 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+++ + ++E Y +HP Sbjct: 262 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHISPENLIETYLMSHP 314 >gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72] gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72] Length = 305 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 249 SPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHP 303 >gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] Length = 331 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H+LRHS ATH+L G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP Sbjct: 277 HSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHP 329 >gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599] gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599] Length = 332 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + + +YD HP Sbjct: 220 HVLRHSFASHMLQSSGDLRAVQELLGHASIGTTQVYTALDFQHLAAVYDAAHP 272 >gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58] gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58] Length = 338 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 281 SPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYAAAHP 335 >gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4] gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4] Length = 297 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP ++ Sbjct: 236 HKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRAKKR 293 >gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] Length = 319 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314 >gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 323 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 267 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHP 321 >gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] Length = 319 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 262 HTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHP 314 >gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL G DLR++Q +LGHS ++ T+IYT++ + R+++++ + HP Sbjct: 244 SISPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHIQAGRLVQLHKRFHP 300 >gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans LB400] gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia xenovorans LB400] Length = 311 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 309 >gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V R+ ++ HP Sbjct: 241 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAVDRLSQVVHANHP 295 >gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittGG] gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG] gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2866] Length = 297 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] Length = 229 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 167 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 226 Query: 64 D 64 + Sbjct: 227 N 227 >gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] Length = 291 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289 >gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 323 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 323 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 267 SPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum SS9] gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9] Length = 292 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP + Sbjct: 236 SPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 292 >gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] Length = 296 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294 >gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] Length = 291 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289 >gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] Length = 308 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 250 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVDAAALLSAYSAAHP 306 >gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613] Length = 291 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289 >gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21] Length = 297 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM 10152] gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 316 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 257 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVSTLREVWATAHP 313 >gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] Length = 305 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHP 301 >gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] Length = 322 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 266 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKTLHAQHHP 320 >gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20] gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20] Length = 299 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 297 >gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2] gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2] Length = 314 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +RM + HP Sbjct: 256 SPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKAMVRDLHP 310 >gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N] gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N] Length = 325 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 46/62 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQ+YT ++ + + ++YDQ HP +K + Sbjct: 261 HVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANRKPE 320 Query: 66 KN 67 N Sbjct: 321 DN 322 >gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica] gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica] gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica] Length = 340 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + E+++QTHP+ Sbjct: 256 AGSCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVAIGHLKEVHEQTHPA-E 314 Query: 62 QKDKKN 67 +K KK Sbjct: 315 RKPKKQ 320 >gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] Length = 316 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H+LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP +K Sbjct: 258 HSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTRLDFQHLAQAYDQAHPRAGRK 315 >gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHL++ G DLRS+Q +LGHS ++TTQIYT+V++ R+ + + HP Sbjct: 248 AISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDADRLKSTHRRFHP 304 >gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10] gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10] Length = 299 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 297 >gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] Length = 331 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL+ G DLR++Q +LGH+ LS+TQIYT+V ++ Y + HP Q Sbjct: 270 HKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRAKQ 326 >gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502] gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] Length = 291 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289 >gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666] gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666] Length = 358 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 27/56 (48%), Positives = 43/56 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP T Sbjct: 276 HMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAT 331 >gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2] Length = 305 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ + HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHP 303 >gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] Length = 312 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 258 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 310 >gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] Length = 263 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256 >gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum] Length = 314 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E + HP Sbjct: 235 SVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRGK 294 Query: 62 QKDK 65 + +K Sbjct: 295 RPEK 298 >gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] Length = 311 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL+NG DLRS+QS+LGH+ +STT+IYT+V R+ + HP Sbjct: 249 SPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEARLKALVHDAHP 303 >gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] Length = 313 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V M E+Y HP Sbjct: 254 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNTMREVYATAHP 310 >gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202] gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202] Length = 301 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++++ HP Sbjct: 245 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHP 299 >gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] Length = 323 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLLS+G DLR++Q +LGH+ ++TTQIYT+V ++R+ E HP Sbjct: 243 SPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTERLQEALRHHHP 297 >gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 323 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX] gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX] Length = 321 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHL+ G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y HP Sbjct: 261 SPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYAAAHP 315 >gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans CH34] gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 302 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ HP Sbjct: 246 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHLHHHP 300 >gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] Length = 313 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 254 AVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 310 >gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152] Length = 298 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL NG DLR+IQ +LGH ++TT++Y ++++ + EI + HP Sbjct: 242 SPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDNSYLKEIVETYHP 296 >gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium] Length = 323 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IYT+++ + +I + HP Sbjct: 267 SPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSHLTQIINNFHP 321 >gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] Length = 297 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHP 295 >gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] Length = 298 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V + + Y + P Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFP 296 >gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 329 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ ILGH L+TT IYT V+ ++YDQTHP Sbjct: 272 VTPHTIRHTIATHWLENGMDLKTIQMILGHISLATTTIYTQVSKGLKKKVYDQTHP 327 >gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius UCC118] gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius UCC118] gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius CECT 5713] Length = 298 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V + + Y + P Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFP 296 >gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5] Length = 300 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G D+R IQ +LGH+ L TQ+YT+ + R+ EIY + HP Sbjct: 240 SPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHP 294 >gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium intracellulare ATCC 13950] Length = 232 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 178 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 230 >gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] Length = 320 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHP 318 >gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 309 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FATHLL G DLR+IQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 253 TPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAAGLLAAYQAAHP 307 >gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] Length = 267 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 208 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 260 >gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] Length = 263 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 204 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 256 >gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 305 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301 >gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] Length = 331 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + YDQ HP +K Sbjct: 273 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGRK 330 >gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506] gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506] Length = 334 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL++G DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 273 SPHVLRHAFASHLLAHGADLRIVQTLLGHSDISTTQIYTHVLDERLKSLVRDLHP 327 >gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] Length = 316 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP +K Sbjct: 256 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 315 >gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] Length = 311 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V + R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTRLKALHAQHHP 309 >gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] Length = 324 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 46/58 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ+HP ++ Sbjct: 262 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLASVYDQSHPRAKRR 319 >gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] Length = 298 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+V + + ++ HP Sbjct: 240 NVTPHTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREHVRHVHQSFHP 296 >gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] Length = 298 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V + + Y + P Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFP 296 >gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] Length = 312 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 48/65 (73%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SI 60 S + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V + + + ++ HP + Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEEGLYRLVNEHHPLAD 307 Query: 61 TQKDK 65 TQK + Sbjct: 308 TQKAR 312 >gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS] gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS] gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS] gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS] Length = 300 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 298 >gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 336 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 280 SPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 334 >gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CNPAF512] Length = 317 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313 Query: 64 DK 65 K Sbjct: 314 KK 315 >gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 296 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 294 >gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70] gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70] Length = 300 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V R+ IY THP Sbjct: 244 SPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTKDRLRHIYLHTHP 298 >gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] Length = 324 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRH+FATHL+ G DLR++Q +LGH+ +STTQIYT+ + R+ ++Y Q HP Sbjct: 268 TTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVYRQAHP 322 >gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] Length = 316 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HLL + GDLR+IQ +LGH+ L TTQIYT+++ + + ++YD HP Sbjct: 253 HRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTHLDYQHLAQVYDAAHP 305 >gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 238 MKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRA 297 Query: 61 TQK 63 ++ Sbjct: 298 RKR 300 >gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS] gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS] Length = 300 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 298 >gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222] Length = 310 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 DK 65 +K Sbjct: 308 NK 309 >gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4] gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4] Length = 303 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHP 301 >gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V R+ E HP Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVADHHP 297 >gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia K279a] gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 325 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 269 SPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 323 >gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 323 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHP 321 >gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1 str. 9-941] gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar Abortus 2308] gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19] gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6 str. 870] gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3 str. Tulya] gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4 str. 292] gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9 str. C68] gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19] gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 252 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565] gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565] Length = 303 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+ ++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHP 301 >gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA2] gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL044PA1] gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA3] Length = 315 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313 >gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] Length = 331 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H+LRHS ATH+L G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP Sbjct: 277 HSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHP 329 >gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] Length = 301 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 46/61 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT+++ + + ++YD HP +K + Sbjct: 239 HMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQHLTKVYDAAHPRARRKPR 298 Query: 66 K 66 + Sbjct: 299 E 299 >gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 345 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ YT ++ + + +IYD HP Sbjct: 269 HMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQHLAKIYDAAHP 321 >gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] Length = 305 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKQLHAKHHP 296 >gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110] gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110] Length = 356 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP Sbjct: 264 HMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDAAHP 316 >gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367] gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367] Length = 311 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/58 (56%), Positives = 41/58 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FATHLL+ G DLRS+Q +LGHS LSTTQIYT+V + + Y Q P T + Sbjct: 246 HMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREHLQRDYRQFFPRATSE 303 >gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1] gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1] Length = 304 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT++ +R+ ++ HP Sbjct: 247 TPHTLRHAFATHLLQNGADLRAIQTLLGHADIATTEIYTHILDERLRQLVLDHHP 301 >gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] Length = 309 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 254 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] Length = 335 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS+A+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + + YD HP +K Sbjct: 277 HMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQHLAKAYDAAHPRARKK 334 >gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08] Length = 310 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 256 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 308 >gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 205 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 149 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 203 >gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 305 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 301 >gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12] gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12] Length = 317 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++ +R+ ++ + HP Sbjct: 261 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHP 315 >gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2 str. 86/8/59] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 252 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] Length = 309 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 254 HVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] Length = 324 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ+HP Sbjct: 251 HLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHP 303 >gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] Length = 302 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 248 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHP 300 >gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT] gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336] gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT] gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336] Length = 297 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 ALSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKILHERFHP 295 >gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRK 301 >gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzicola BLS256] Length = 345 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 284 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 341 >gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] Length = 325 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 269 SPHALRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 323 >gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] Length = 362 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y HP Sbjct: 304 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHP 358 >gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 263 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 207 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 261 >gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] Length = 300 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 246 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHP 298 >gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] Length = 342 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLLS G DLR+IQ +LGH+ + TTQIYT V +R+++ + + HP Sbjct: 285 HLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTAVEERRLLDQHARFHP 337 >gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 298 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP + Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 298 >gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str. 'morsitans'] gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 303 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + G+LR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 244 HKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 296 >gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum PYR-GCK] gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK] Length = 300 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 246 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHP 298 >gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 308 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FATHLLS G DLR++Q +LGH+ +STTQIYT+V + + ++ + HP Sbjct: 249 TPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMTDELQKLLEAAHP 303 >gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10] Length = 308 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP Sbjct: 249 HKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHP 301 >gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1] Length = 306 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] Length = 291 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP +K Sbjct: 233 HMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKRK 290 >gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 327 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 271 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 325 >gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 328 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V + ++Y HP Sbjct: 269 SPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHP 323 >gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] Length = 317 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 262 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHP 314 >gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL G DLR +Q +LGHS LSTTQIYT+V + ++Y +HP Sbjct: 240 PHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHP 293 >gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. natto BEST195] Length = 304 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP +K+ Sbjct: 246 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRAFKKN 304 >gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 244 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 301 >gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS] gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL G DLR +Q +LGHS LSTTQIYT+V + ++Y +HP Sbjct: 240 PHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHP 293 >gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655] Length = 298 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H L HSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 240 HKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHP 292 >gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] Length = 296 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL DLR++Q +LGH+ LSTTQIYT+++ + + +YD HP +K Sbjct: 239 HKLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDTAHPRAKKK 296 >gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 304 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP +K+ Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRAFKKN 304 >gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. SMY] gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642] gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] Length = 304 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP +K+ Sbjct: 246 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRAFKKN 304 >gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] Length = 311 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E+Y HP Sbjct: 253 SPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTVDTLREVYAMAHP 307 >gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355] Length = 220 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 164 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHP 218 >gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] Length = 285 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q +LGHS LSTTQ YT+V++ R+ IY + HP Sbjct: 231 HGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHP 283 >gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] Length = 312 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ HP Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMHHP 305 >gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] Length = 292 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DLR++Q +LGHS + T+IYT+V S RM+ ++ + HP Sbjct: 236 SPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVALHRKFHP 290 >gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] Length = 316 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHP 314 >gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] Length = 378 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H+LRHS ATHLL G DLR++Q +LGH+ ++TTQIYT+V+ +R+ Y Q HP Sbjct: 324 HSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAHP 376 >gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] Length = 307 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/54 (57%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL G DLR +Q +LGHS LSTTQIYT+V + ++Y +HP Sbjct: 240 PHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHP 293 >gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] Length = 309 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/56 (57%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG D+ IQ +LGH+ L+TTQIYT+V S+R+ I + HP Sbjct: 250 VSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASERLKSILLKFHP 305 >gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3] Length = 312 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V R+ + ++ HP I Q Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEHHPLIDQ 308 >gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 7894] gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei BCC215] gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] Length = 333 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331 >gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 313 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATHLL G DLR++Q ILGHS + TTQ YT+V+++R+ + Q HP Sbjct: 257 TPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAAFGQAHP 311 >gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] Length = 301 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ HP Sbjct: 245 SPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKERLKSLHQAHHP 299 >gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] Length = 309 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 254 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHP 306 >gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088] gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088] Length = 271 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRHS+ATHLL G ++R IQ +LGHS LSTT+IYT V +K++ E YD+ Sbjct: 215 VTPHVLRHSYATHLLEKGLNIRYIQKLLGHSSLSTTEIYTKVTNKKLKEKYDK 267 >gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2] gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2] Length = 348 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP Sbjct: 273 HVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHP 325 >gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4] Length = 250 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/54 (59%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLLSNG DLRS+Q +LGHS LS+TQ YT+V + + + Y HP Sbjct: 195 PHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKEHLRKTYLSHHP 248 >gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus ATCC 19977] gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus] Length = 304 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 250 HGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 302 >gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] Length = 327 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 271 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 325 >gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] Length = 292 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + ++YD HP +K Sbjct: 235 HMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDSAHPRARKK 292 >gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] Length = 316 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHP 314 >gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009] gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas palustris CGA009] Length = 338 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 279 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 333 >gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] Length = 313 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP Sbjct: 244 VSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHP 299 >gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803] Length = 385 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/58 (58%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATH+L NG DLR IQ +LGHS+ TT IYT+V K +M+I SI Sbjct: 306 VTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKDLMKIQSPLDASI 363 >gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis Tohama I] gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I] gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS] Length = 326 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + DLR++Q +LGH+ +STTQ+YT ++ + + YDQ HP +K Sbjct: 266 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTS 325 Query: 66 K 66 + Sbjct: 326 R 326 >gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] Length = 315 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL+NG D+R +Q +LGHS +STTQ+YT+V+ + ++Y THP Sbjct: 255 EVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVSKALLKDVYMNTHP 311 >gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 298 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R++Q +LGH+ ++TTQIYT+V + + E++ HP Sbjct: 242 SPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPENLREVWRTAHP 296 >gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 300 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL+ G DLR++Q +LGH L TTQ+YT+V+ +R+ +Y HP Sbjct: 244 SPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHP 298 >gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis MSMB43] Length = 320 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKMLHAANHP 318 >gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. 8004] gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. B100] gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 323 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + ++ + HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARHHP 321 >gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] Length = 309 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFAT++L+NG DL+ I+ ILGH+ LS T++YT+ K + ++Y+Q HP Sbjct: 250 VKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKELKKVYNQAHP 307 >gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 276 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS ATHLL++G D+R +Q +LGHS + TQIYT++N K + + YD THP Sbjct: 215 VSPHTLRHSKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKELAQTYDSTHP 270 >gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15] Length = 310 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ+HP Sbjct: 242 HLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHP 294 >gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL+NG DLR IQ +LGH+ +S+T YT V+S + E + + HP Sbjct: 245 TISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHP 301 >gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] Length = 303 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q +LGHS LSTTQ YT+V++ R+ IY + HP Sbjct: 249 HGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHP 301 >gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] Length = 297 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 46/59 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYD HP +++ Sbjct: 239 HVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQHLAKIYDAAHPRAKKRN 297 >gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01] gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01] Length = 313 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP ++ Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKR 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum R] gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R] Length = 304 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT++ + + E++ HP Sbjct: 248 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHP 302 >gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes KPA171202] gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202] gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1] gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1] gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2] gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2] gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1] gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1] gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1] gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2] gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1] gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2] gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1] gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2] gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1] gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1] gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1] gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4] gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1] gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3] gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3] gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1] gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1] gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1] gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2] gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1] gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1] gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1] gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1] gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2] gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1] gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2] gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3] gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2] gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1] gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3] gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1] gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1] gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2] gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1] gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1] gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2] gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3] gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1] gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2] gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1] gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2] gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2] gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3] gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2] gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1] gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2] gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1] gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1] gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1] Length = 306 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] Length = 322 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 46/63 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HT+RHSFATHLL G DLR++Q +LGH+ +S T+IYT++ + R++ ++ + HP +K Sbjct: 249 SPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSRLLAVHREHHPRSARK 308 Query: 64 DKK 66 + Sbjct: 309 SGR 311 >gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE] gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE] Length = 272 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFATH+L NGG++ +IQ +LGH+ L+TTQIYT+ + + ++Y THP Sbjct: 214 VTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSLNTTQIYTHYSVDELKDMYAHTHP 269 >gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] Length = 329 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 273 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 327 >gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 316 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHP 314 >gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] Length = 309 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT++ +R+ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDERLKSMVRDLHP 304 >gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes KPA171202] gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202] gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA1] gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA1] gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA2] gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA1] gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA2] gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL086PA1] gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA4] gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA1] gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA3] gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL067PA1] gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA1] gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA1] gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA1] gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA1] gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA2] gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA2] gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA1] gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA1] gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA2] gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL092PA1] gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA3] gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA2] gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA1] gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA2] Length = 315 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313 >gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC BAA-1116] gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116] Length = 313 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP ++ Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKR 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] Length = 300 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGH+ L+TTQ+YT+V +R+ ++DQ HP Sbjct: 246 HGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAHP 298 >gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032] gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032] Length = 304 Score = 69.3 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT++ + + E++ HP Sbjct: 248 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHP 302 >gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] Length = 311 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 309 >gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA1] Length = 315 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313 >gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243] gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243] gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] Length = 323 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT+++ R+ +++ +THP Sbjct: 265 SLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHP 321 >gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 250 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHP 302 >gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266] Length = 306 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum PRL2010] Length = 322 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 267 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHP 319 >gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] Length = 301 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFAT +L+NG DLR++Q +LGH+ LSTTQIYT+V +++ E Y + P T+ Sbjct: 244 HMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEKLQESYRKFFPRSTK 300 >gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30] gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30] Length = 182 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 128 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 180 >gi|229092872|ref|ZP_04224006.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] gi|228690494|gb|EEL44277.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] Length = 54 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/51 (56%), Positives = 40/51 (78%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 2 LRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHP 52 >gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] Length = 360 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G D+RS+Q +LGH+ ++TTQIYT++ + + ++ HP Sbjct: 306 HTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHP 358 >gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] Length = 300 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHP 298 >gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP +K Sbjct: 286 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARRK 343 >gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301] gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301] Length = 302 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHHKHHP 300 >gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] Length = 316 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 314 >gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 317 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQA 313 Query: 64 DK 65 K Sbjct: 314 KK 315 >gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333] gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333] Length = 380 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL+ G DLRS+Q ILGH+ L+TTQ YT+V +R+ + Q HP Sbjct: 326 HGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPERLRAAFRQAHP 378 >gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] Length = 325 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 269 SPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 323 >gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 296 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT RHSFA+HLL G DLRS+Q +LGH+ +STTQIYT+V + + +I+ + HP Sbjct: 242 HTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHP 294 >gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 508 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 452 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 506 >gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894] Length = 311 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 254 SPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHP 308 >gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 299 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LS+TQIYT+V + + + Y +HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKEALRKTYMNSHP 297 >gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA1] gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL097PA1] Length = 315 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313 >gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171] gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] Length = 322 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 267 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHP 319 >gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHP 307 >gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str. McKiel] gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 305 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K ++ +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLVSVYTSAYP 302 >gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14] gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14] Length = 298 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHP 296 >gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 304 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L+ G DLR++Q +LGH+ ++TTQIYT+V ++R+ + + HP Sbjct: 240 SPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHP 294 >gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38] gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38] Length = 299 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLRSIQ +LGH ++TT++Y +++ K + E+ + HP Sbjct: 241 TISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRKFLSEVLNNYHP 297 >gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] Length = 300 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 47/62 (75%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + DLR++Q +LGH+ +STTQIYT+++ + + +IYD HP +K+ Sbjct: 239 HLLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQHLSKIYDDAHPR-AKKNN 297 Query: 66 KN 67 +N Sbjct: 298 RN 299 >gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 91] gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei B7210] gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei NCTC 13177] gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243] gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] Length = 333 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331 >gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01] Length = 310 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHP 296 >gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] Length = 303 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 45/55 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++ +R+ +++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKQLHAKHHP 301 >gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] Length = 360 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G D+RS+Q +LGH+ ++TTQIYT++ + + ++ HP Sbjct: 306 HTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHP 358 >gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1] gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRQLVEAHHP 304 >gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 325 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGH+ L+TTQIYT+V+ +R+ Y Q HP Sbjct: 271 HGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTHVSIERLAASYAQAHP 323 >gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHS ATHLL G DLRS+Q +LGH+ + +TQIYT+V+++R+ Y Q HP Sbjct: 259 SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAERLRGAYRQAHP 315 >gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 248 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKILHAQHHP 302 >gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 298 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRHSFATHLL NG DLRSIQ +LGH ++TT+IY +++ + E+ HP Sbjct: 240 SISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLDRSFLKEVMHSYHP 296 >gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS] gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS] Length = 317 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 3/63 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP---SITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQIYT ++ + + + YD HP + T Sbjct: 255 HMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTRLDFQHLAKAYDAAHPRAKARTD 314 Query: 63 KDK 65 KDK Sbjct: 315 KDK 317 >gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] Length = 317 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 262 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHP 314 >gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 302 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H+LRH+FATHLL++G DLRS+Q +LGH+ LSTT+IYT+V R+ ++ + HP Sbjct: 244 TVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQARLKALHAKHHP 300 >gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] Length = 302 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHL+ G DLR++Q++LGH+ +STTQ+YT+++ + YD HP Sbjct: 246 SPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHP 300 >gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 298 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP Sbjct: 242 SPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHP 296 >gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 310 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y + HP Sbjct: 256 HKLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRKFHP 308 >gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes HL027PA2] Length = 331 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 274 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 328 >gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] Length = 329 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 268 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 327 Query: 64 DK 65 +K Sbjct: 328 EK 329 >gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 315 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+FATHLL G DLRSIQ++LGH+ ++TT+IYT+V +R+ ++ + HP Sbjct: 250 TPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDERLKKLVLEYHP 304 >gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium chlorochromatii CaD3] gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium chlorochromatii CaD3] Length = 338 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 43/54 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FATHLL++G DL S+ +LGHS L+TT++YT+V +R+ E+Y + HP+ Sbjct: 284 HLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTHVTFERLKEVYRKAHPN 337 >gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] Length = 313 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y HP Sbjct: 255 SPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLREVYAAAHP 309 >gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 310 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR +Q +LGH+ LSTTQ+YT+V R+ ++DQ HP Sbjct: 256 HGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHVTVDRLKVVHDQAHP 308 >gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As] Length = 317 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++ +R+ ++ + HP Sbjct: 261 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHP 315 >gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10] Length = 321 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 43/61 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FATHLL+ G DLRS+Q +LGH+ +STTQIYT+V +R+ + HP + Sbjct: 256 SPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLARRT 315 Query: 64 D 64 D Sbjct: 316 D 316 >gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 300 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G D+R IQ +LGH+ L TQ+YT+ + R+ EIY + HP Sbjct: 240 SPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHP 294 >gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114] gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114] Length = 298 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP +K Sbjct: 238 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 297 >gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T] gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T] Length = 304 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + GDLR++Q +LGH+ + +TQIYT+++ + + +YD HP Sbjct: 248 HMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQHLAAVYDAAHP 300 >gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] Length = 281 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ+YT+V S+R+ ++++Q HP Sbjct: 225 SPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSERLKKVFNQAHP 279 >gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1] Length = 306 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 316 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRHSFA HLL NG D+R++Q ++GH+ L+ TQ Y ++ RM E+Y+++HP Sbjct: 259 TPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHLTKSRMKEVYERSHP 313 >gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2] gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3] gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4] gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2] gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1] Length = 306 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica RB50] gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50] Length = 310 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 308 >gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] Length = 307 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 43/59 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YD HP +++ Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAKKRN 307 >gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss] gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum MopnTet14] Length = 299 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGH+R+S+T+IYT+V S+ ++E + HP Sbjct: 241 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHP 295 >gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 298 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q +LGH+ L TTQIYT+V+ +R+ Y+ HP Sbjct: 244 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLQRSYEGAHP 296 >gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] Length = 314 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 260 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 312 >gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 298 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ +++Q HP Sbjct: 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAHP 296 >gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL074PA1] gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA2] gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA1] gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA2] gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA1] gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA2] gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA1] gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL007PA1] gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL056PA1] gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA3] gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA2] gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA1] gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL045PA1] gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA2] gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA1] gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA2] gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA3] gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL078PA1] gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA2] gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA3] gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL038PA1] gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA2] gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA3] gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA2] gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA1] gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA2] gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL020PA1] gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL099PA1] gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266] Length = 315 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 261 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 313 >gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH] gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH] Length = 333 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331 >gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] Length = 305 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL G +LRSIQ +LGH LSTTQ YT + KR+ +Y +P Sbjct: 248 TAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYP 302 >gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.] Length = 298 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/57 (56%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H+LRHSFATHLL G DLRS+Q +LGH +STTQIYT+V + +I+ + HP Sbjct: 240 TITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVVRDHLKKIHSKYHP 296 >gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] Length = 329 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 273 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 327 >gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HTLRHSFATH+L+ G DLR +Q +LGH+ +STTQIYT+V++ R ++ YDQ Sbjct: 239 TPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVK-YDQA 290 >gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] Length = 298 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ ++ HP Sbjct: 240 SISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVMNKYHP 296 >gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132] gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132] Length = 307 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R+ ++ + HP T Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLKTLHRKFHPRST 306 >gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 380 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 27/52 (51%), Positives = 38/52 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH+FATHLL G LR++Q +LGH+ L+ TQ+YT+V+ R+ +Y Q H Sbjct: 273 HLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHVSRARLWAVYQQAH 324 >gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] Length = 329 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 273 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 327 >gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] Length = 333 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331 >gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] Length = 303 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +I++ HP Sbjct: 247 SPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKIHEMHHP 301 >gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 14] gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 9] gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 112] gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] Length = 333 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 331 >gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] Length = 295 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V +R+ +I+ + HP Sbjct: 239 SPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARERLKKIHQEHHP 293 >gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis 12822] gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis] Length = 310 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERLKALHAAHHP 308 >gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980] gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299 >gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15] gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299 >gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299 >gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330] gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330] Length = 314 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 260 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 312 >gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] Length = 313 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL G DLRSIQ++LGH ++TT+IYT+V +R+ ++ + HP Sbjct: 250 TPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDERLKQLVLEHHP 304 >gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205] gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205] Length = 363 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TT H LRH+ ATHLL G DLR++Q +LGH+ L++TQIYT+V+ +R+ Y Q HP Sbjct: 306 TTPHGLRHATATHLLEGGADLRTVQELLGHTSLASTQIYTHVSVERLRAAYRQAHP 361 >gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula baltica WH47] Length = 317 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V R+ ++ HP Sbjct: 261 SPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHP 315 >gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 297 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLRS+Q +LGH+ +STT IYT++ R+ ++ Q HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIARDRLASLHAQHHP 295 >gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1] Length = 348 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQIYT ++ + + + Y++ HP Sbjct: 273 HVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTRLDFQHLAQAYEKAHP 325 >gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410] gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408] gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6] gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162] gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408] gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6] gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299 >gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12] gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12] gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299 >gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] Length = 332 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Q Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHVLDERLKGMVRDLHPLNDQS 314 Query: 64 D 64 D Sbjct: 315 D 315 >gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL+N DLR IQ +LGH+R+S+T+IYT+V S+ ++E + HP Sbjct: 243 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHP 297 >gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 276 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL G D+R +Q +LGHS ++TTQIYT V + + E++ +HP + Sbjct: 222 HALRHSFATHLLQGGADVRVVQELLGHSSVATTQIYTKVTADHLREMWATSHPRV 276 >gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] Length = 292 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V ++R+ E+ + HP Sbjct: 234 SLSPHGLRHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQRLKELVGKHHP 290 >gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] Length = 269 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP ++ Sbjct: 204 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKR 263 Query: 64 D 64 + Sbjct: 264 N 264 >gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 310 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP +K Sbjct: 248 SPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARKK 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68] gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 299 >gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str. Madrid E] gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii] gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22] Length = 305 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL G DLRSIQ +LGH LSTTQ YT + K + +Y+ +P Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302 >gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] Length = 306 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ + HP Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHP 297 >gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] Length = 334 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 273 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332 Query: 64 DK 65 D+ Sbjct: 333 DE 334 >gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ H LRHSFATHLL G DLRS+Q++LGH+ + TT+IYT++ + Y + HP Sbjct: 266 SSPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHP 321 >gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152] gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152] Length = 315 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 4/62 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ + + ++Y+Q HP K K Sbjct: 257 HMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHP----KSK 312 Query: 66 KN 67 KN Sbjct: 313 KN 314 >gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] Length = 319 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y HP Sbjct: 261 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHP 315 >gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] Length = 285 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 45/62 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H+LRHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R++ ++ HP + Sbjct: 223 SPHSLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHPRSRDR 282 Query: 64 DK 65 DK Sbjct: 283 DK 284 >gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1] gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1] Length = 341 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 285 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHP 339 >gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii RML369-C] gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C] Length = 305 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+ RHSFA+HLL NG DLRSIQ +LGH LSTTQ YT + K + Y HP Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302 >gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str. Wilmington] gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington] Length = 305 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL G DLRSIQ +LGH LSTTQ YT + K + +Y+ +P Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302 >gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus CB15] gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus NA1000] gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15] gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus NA1000] Length = 304 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FATHLL G DLR+IQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 248 TPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAAGLLAAYQAAHP 302 >gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000] gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus NA1000] Length = 305 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR IQ++LGH+ ++TTQIYT+V + + I HP Sbjct: 245 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHP 299 >gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160] gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160] Length = 307 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 43/59 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YD HP +++ Sbjct: 249 HVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAKKRN 307 >gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] Length = 305 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/55 (58%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+ RHSFA+HLL NG DLRSIQ +LGH LSTTQ YT + K + Y HP Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302 >gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1] Length = 312 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V +R+ + ++ HP Q+ Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEERLYCLVNEHHPLADQQ 309 >gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] Length = 300 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS+A+HLL D+R++Q +LGHS LSTTQIYT ++ + + +YD+ HP +K Sbjct: 239 SPHMLRHSYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEHLAAVYDEAHPRAKRK 298 Query: 64 DK 65 + Sbjct: 299 KE 300 >gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 233 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKAMVRDLHP 287 >gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1] gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1] Length = 308 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 249 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAGAHP 305 >gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] Length = 304 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FATHLL G DLR++Q +LGHS +STTQIYT+++ + E++ HP Sbjct: 248 SPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHIDRSFVKEVHKTFHP 302 >gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] Length = 308 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGH+ L+TTQ+YT+V+ +R+ ++DQ HP Sbjct: 254 HGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHP 306 >gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus ATCC 19977] gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus] Length = 315 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 256 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSALREVWAGAHP 312 >gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] Length = 274 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/49 (59%), Positives = 39/49 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++ K + Sbjct: 208 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSL 256 >gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1] Length = 325 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V R+ ++ HP Sbjct: 269 SPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHP 323 >gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402] Length = 267 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/49 (59%), Positives = 39/49 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++ K + Sbjct: 201 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSL 249 >gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 307 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++ Y HP Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHP 291 >gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] Length = 323 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/51 (60%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFAT LL+NG D+R++Q ILGHS + TTQIYT V+ KR E+ Sbjct: 250 EATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEV 300 >gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110] gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110] Length = 303 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL+ G DLR++Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 247 SPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAQHHP 301 >gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] Length = 308 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERLKSMVRDLHP 304 >gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 323 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 262 SPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLHKLVTEHHP 316 >gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264] Length = 333 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHP 331 >gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 307 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++ Y HP Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHP 291 >gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 302 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATH+L+NG DLRS+Q +LGHS +STTQIYT+V + + Y + P Sbjct: 247 PHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEHLKRDYRKFFP 300 >gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4] gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4] Length = 191 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V + + Y Q HP Sbjct: 137 HMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKDLLQKNYRQFHP 189 >gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 298 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ ++ HP Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSHLAQVLNEFHP 296 >gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688] gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688] Length = 298 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHP 296 >gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] Length = 298 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHP 296 >gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis Tohama I] gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I] gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS] Length = 310 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 308 >gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 313 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR IQ++LGH+ ++TTQIYT+V + + + HP Sbjct: 251 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHP 305 >gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus faecium DO] Length = 225 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 170 PHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHP 223 >gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 280 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 334 >gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHP 299 >gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1] Length = 306 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] Length = 300 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 246 HGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHP 298 >gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 323 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FATHLL G DLR+IQ++LGH+ L TT+IYT+V RM ++ HP + Sbjct: 258 SPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTRMRDLVLNHHPLAKGR 317 Query: 64 DKKN 67 +N Sbjct: 318 GDEN 321 >gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica RB50] gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50] Length = 326 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + DLR++Q +LGH+ +STTQ+YT ++ + + YDQ HP +K Sbjct: 266 HVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGRKTS 325 Query: 66 K 66 + Sbjct: 326 R 326 >gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614] gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614] Length = 318 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E++ HP Sbjct: 260 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHP 314 >gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2] gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1] gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3] gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08] Length = 306 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHP 303 >gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 319 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++ ++E Y +HP Sbjct: 264 HTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316 >gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] Length = 304 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH++ATH+L G DLRS+Q +LGHS ++TTQIYT+++ R+ YD+ + + Sbjct: 237 TPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYDEGLGKLMDQ 296 Query: 64 DKKN 67 + +N Sbjct: 297 EGEN 300 >gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Ikeda] gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda] Length = 309 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFA+HLL G DL+ IQ +LGH +S+TQIYT+V +R+ + ++ HP+ Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355] Length = 301 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 240 SPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 299 Query: 64 DK 65 +K Sbjct: 300 EK 301 >gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] Length = 330 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH FATHLL +G DLRS+Q +LGH+ + TTQIYT+V R+ + HP Sbjct: 268 SPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHP 322 >gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 278 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/51 (56%), Positives = 43/51 (84%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HTLRH++AT LL+NG D+R+IQ++LGH++L+TTQ+YT V+ RM++ D Sbjct: 221 TPHTLRHTYATLLLNNGVDIRTIQTLLGHAQLTTTQVYTKVDVARMVDAID 271 >gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] Length = 312 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR++Q +LGH +STTQ+YT+V R+ + ++ HP + Q Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEARLHRLVNEHHPLVDQ 308 >gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03] gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07] gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22] gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26] gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32] gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12] Length = 306 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ + HP Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHP 297 >gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 308 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL +G DLRS+Q +LGH++L+TT+IYT++ R+ ++ Q HP Sbjct: 252 SPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHP 306 >gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S HTLRHS+ATHLL G D+R++Q +LGH+ ++TTQIYT V+ + E+Y +HP Sbjct: 268 SVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHP 324 >gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] Length = 313 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL+ G DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Q Sbjct: 250 SPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDERLKQLVSEHHPLAKQP 309 Query: 64 DKKN 67 ++ Sbjct: 310 KNRD 313 >gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 282 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H LRH+FATHLL+ G DL +I+ +LGH+ LS TQIYT+ + +++ E++ + HP Sbjct: 225 TSPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTHNSIQKLKEVFQKAHP 280 >gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 313 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FAT LLS G DLR +Q +LGH LSTTQIYT+++ +R+ + Q HP Sbjct: 255 TPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIERLKDAAKQAHP 309 >gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Boryong] gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong] Length = 309 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFA+HLL G DL+ IQ +LGH +S+TQIYT+V +R+ + ++ HP+ Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] Length = 311 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 309 >gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] Length = 293 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL G DLRS+Q +LGH+ ++TTQIYT+V +R+ E++ HP Sbjct: 239 HGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRERLKELHGTCHP 291 >gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 319 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++ ++E Y +HP Sbjct: 264 HTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316 >gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] Length = 306 Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+RS+Q +LGH+ + TTQIYT+V+ ++E Y HP Sbjct: 251 HTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSPDSLIEAYAMAHP 303 >gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] Length = 358 Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR+IQ +LGH+ L+TTQ YT+V+ ++++YD HP Sbjct: 298 HALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHP 350 >gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 308 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 44/56 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+FAT +LS+G D+R +Q +LGHS +STTQ YT++ +++++EIY++ HP Sbjct: 245 VSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTHITTEQLIEIYNRAHP 300 >gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] Length = 319 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++ ++E Y +HP Sbjct: 264 HTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHP 316 >gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 311 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL G D+R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP Sbjct: 253 TPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHP 307 >gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] Length = 308 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAIHHP 306 >gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] Length = 322 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 266 SPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRVAHP 320 >gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] Length = 303 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + ++YD+ HP +K Sbjct: 239 SPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKRK 298 >gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis Bt4] Length = 312 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHP 310 >gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis TXDOH] Length = 323 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHP 321 >gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 298 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +++ + ++ +Q HP Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTHLRDVVNQFHP 296 >gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] Length = 310 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGH+ L+TTQ+YT+V+ +R+ ++DQ HP Sbjct: 256 HGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHP 308 >gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] Length = 327 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 268 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 322 >gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] Length = 299 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + ++YD+ HP +K Sbjct: 239 SPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKRK 298 >gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] Length = 308 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT++ R+ + HP Sbjct: 252 TPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHP 306 >gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] Length = 307 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 41/50 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT++ ++ + E Y + Sbjct: 247 HMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKK 296 >gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567] gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567] Length = 320 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHL+ G D+R +Q +LGH+ ++TTQ+YT V + M+E+Y HP ++ Sbjct: 260 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHPRAHER 319 >gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] Length = 309 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 250 HKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHP 302 >gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM] Length = 303 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E + HP Sbjct: 243 SPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHP 297 >gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] Length = 247 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 190 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 244 >gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] Length = 304 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 3/62 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP---SI 60 + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++ HP +I Sbjct: 243 SPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEELRDVILSYHPRNINI 302 Query: 61 TQ 62 TQ Sbjct: 303 TQ 304 >gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043] gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043] Length = 298 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGH+ LSTTQ+YT ++ + + + YDQ HP Sbjct: 235 HRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLADAYDQAHP 287 >gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503] gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis HTCC2503] Length = 315 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FATHLL+ G DLR++Q++LGHS L TTQ YT +++ R++ ++ HP Sbjct: 255 TPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAAHP 309 >gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] Length = 298 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQIYT+++ + + +YDQ HP +K Sbjct: 237 HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLANVYDQAHPRAKRK 294 >gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLRS+Q +LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 253 HGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFP 305 >gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2] gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2] Length = 313 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRH+FATHLL+ G DLR IQ++LGH+ ++TT+IYT+V + + ++ HP Sbjct: 252 TPHTLRHAFATHLLAGGADLRVIQTLLGHADIATTEIYTHVLDEHLKDLVLTHHP 306 >gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] Length = 324 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 269 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTAHP 321 >gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868] gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868] gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD] Length = 303 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E + HP Sbjct: 243 SPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHP 297 >gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254] gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254] Length = 91 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL+NG D+R +Q +LGHS ++TTQ+YT+V+ + +IY THP Sbjct: 33 TPHVFRHSFATELLNNGVDIRYLQELLGHSSIATTQVYTHVSKAFLRDIYMNTHP 87 >gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] Length = 299 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM + + HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARLRMKHQHAEHHP 297 >gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] Length = 307 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS+A+HLL N D+R++Q +LGHS+L+TTQ YT ++ + IYD HP ++ Sbjct: 230 SPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDFDHLARIYDDAHPRAKRR 289 Query: 64 DKK 66 K Sbjct: 290 QGK 292 >gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] Length = 295 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + ++YD HP K Sbjct: 238 HMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAKVYDAAHPRAKSK 295 >gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 307 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT+V+S+R+ ++ HP Sbjct: 251 TPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSERLRSVHHAAHP 305 >gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] Length = 309 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 41/56 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH++ATHLL G DLR +Q++LGH+ ++TTQIYT+V + + E+ + HP T Sbjct: 248 HALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMAT 303 >gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084] gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084] Length = 308 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH++AT LLS G DLRS+Q +LGHS LSTTQIYT+++ R+ Q HP Sbjct: 251 TPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQAHP 305 >gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999] Length = 304 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L + GDLR++Q +LGH+ L+TTQ+YT+++ + + +YD HP Sbjct: 246 SPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQHLAGVYDNAHP 300 >gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 306 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q +LGH+ L TTQIYT+V+++R+ + Q HP Sbjct: 252 HGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAAFRQAHP 304 >gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 304 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP----S 59 + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + E+ ++ HP S Sbjct: 242 SPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREVLEKFHPRQKMS 301 Query: 60 ITQ 62 +TQ Sbjct: 302 LTQ 304 >gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC] Length = 299 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHP 295 >gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1] gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] Length = 299 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHP 295 >gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] Length = 303 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ HP Sbjct: 237 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIHHP 291 >gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] Length = 297 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10] gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10] Length = 302 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++ HP Sbjct: 244 SPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHP 298 >gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum ATCC 33209] gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium salmoninarum ATCC 33209] Length = 312 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y HP Sbjct: 254 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYASAHP 308 >gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] Length = 300 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG D+R+IQ +LGH ++TT++Y +V+ + E+ + HP Sbjct: 240 NVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTHLAEVVREHHP 296 >gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp. Ellin185] gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp. Ellin185] Length = 352 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHS ATHL+ G DLR++Q LGH+ L+TTQIYT+V+++R+ ++Q HP Sbjct: 294 TLSPHALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAERLRAGFEQAHP 350 >gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 303 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATHLL G DLR++Q ILGH+ L TTQ YT+V+S+R+ + Q HP Sbjct: 247 SPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAAFTQAHP 301 >gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] Length = 304 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/52 (63%), Positives = 39/52 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AHTLRHSFAT +L G DLR IQ +LGH +STTQIYT+VN K + YDQ Sbjct: 236 SAHTLRHSFATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKKTLKREYDQ 287 >gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C] Length = 312 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 43/59 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V R+ + ++ HP + Q Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEYHPLVDQ 308 >gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] Length = 304 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 246 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHP 298 >gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] Length = 299 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ K + ++ HP Sbjct: 242 SPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKHLSQVMQTFHP 296 >gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRH+FATHLL+ G DL SIQ++LGH+ ++TT+IYT+V R+ E+ HP T+ Sbjct: 249 TPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDARLRELVLTHHPLATK 307 >gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis C231] gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis 1002] gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis I19] Length = 310 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS+A+HLL G D+R +Q +LGHS ++TTQIYT++ + + ++ Q+HP Sbjct: 254 SPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADNLRIVWSQSHP 308 >gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] Length = 334 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332 Query: 64 DK 65 +K Sbjct: 333 EK 334 >gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 294 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FAT +L NG DL SI+ +LGHS L+ TQ+YT+ + K + ++Y THP Sbjct: 237 SPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKELQKLYQNTHP 291 >gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301] gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301] Length = 294 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + IYD HP Sbjct: 231 ISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQHLASIYDSAHPRA 290 Query: 61 TQK 63 +K Sbjct: 291 KKK 293 >gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 297 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ HP Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHP 305 >gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] Length = 332 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 276 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 330 >gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] Length = 297 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] Length = 312 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 40/57 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL G DLR+IQ +LGH+ +STTQIYT V + R+ + + HP Q Sbjct: 252 HLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAVQANRLADEHALHHPRSKQ 308 >gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 306 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RH+FATHLL G DLRS+Q +LGH +S T++YT+V S R+ I+ HP Sbjct: 239 SISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHP 295 >gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411] Length = 299 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ + + EI+ +HP Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHP 297 >gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 326 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ + + +YD HP K Sbjct: 265 HVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQHLAAVYDSAHPRAKTKKS 324 Query: 66 KN 67 N Sbjct: 325 GN 326 >gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] Length = 297 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-93-1035] gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] Length = 305 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] Length = 302 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 246 SPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHP 300 >gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] Length = 322 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHP 320 >gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus S26/3] gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3] Length = 299 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHP 295 >gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175] gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175] Length = 306 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305 Query: 66 K 66 K Sbjct: 306 K 306 >gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 316 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +RM + HP Sbjct: 256 HALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMRAMVRDLHP 308 >gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens TA208] gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 305 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHP 299 >gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2] gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans CJ2] Length = 300 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ I+ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIHAEHHP 298 >gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] Length = 293 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQ+YT+++ + + ++YD HP +K Sbjct: 236 HMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDNAHPRAKKK 293 >gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] Length = 302 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT V +R+ +++ HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVARERLKKLHAAHHP 300 >gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 292 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFAT LL G DLR++Q +LGH+ LSTT YT+V ++R+ +Y Q HP Sbjct: 236 TPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTERLRHVYQQAHP 290 >gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens FZB42] gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42] Length = 305 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHP 299 >gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 86-028NP] gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP] Length = 297 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155] gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155] Length = 306 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305 Query: 66 K 66 K Sbjct: 306 K 306 >gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031] gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031] Length = 297 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] Length = 297 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74] gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74] Length = 298 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL +I+ +LGHS L+ TQIYT+ + ++ + YDQ HP Sbjct: 240 SPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHP 294 >gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp] gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp] Length = 315 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQIYT+++ + + +YDQ HP +K Sbjct: 254 HMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLATVYDQAHPRAKRK 311 >gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd KW20] gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20] gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] Length = 297 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] Length = 310 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G D+R +Q +LGHS ++TTQIYT V + + EIY HP Sbjct: 251 SPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVTRETLKEIYATAHP 305 >gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A] gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A] Length = 308 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 305 >gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis EO147] Length = 325 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 323 >gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] Length = 324 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L GDLR++Q +LGH+ ++ TQ+YT+++ +R+ ++YD HP Sbjct: 264 HVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLDFQRLAQVYDAAHP 316 >gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] Length = 308 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 305 >gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5] gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1] gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5] gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1] gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162] gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162] Length = 298 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ R+ ++Q HP Sbjct: 244 HGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAHP 296 >gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1] gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3] gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8] gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96] gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol] gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6] gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG] gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11] gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1] gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3] gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8] gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96] gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol] gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6] gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11] gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76] gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137] gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000] gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017] gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141] gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244] gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012] gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312] gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645] gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342] gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346] gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B] gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A] gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62] gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467] Length = 298 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 296 >gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98] gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98] gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis C6786] Length = 325 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 323 >gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] Length = 307 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E Y HP + Sbjct: 250 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQLAHPRV 306 >gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109] gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109] Length = 308 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q ILGH+ LSTTQ YT+V+++R+ ++ HP Sbjct: 254 HALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAERLRSAFELAHP 306 >gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704] gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704] gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102] gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102] Length = 298 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP +K Sbjct: 238 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 297 >gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] Length = 298 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP +K Sbjct: 238 SPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKRK 297 >gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2] gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 347 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V R+ + HP Sbjct: 289 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHP 343 >gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] Length = 310 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ + TT IYT+V +R+ +++ + HP Sbjct: 254 SPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARERLRQLHARHHP 308 >gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1] gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1] gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49] gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G DLR+IQ +LGH ++TT+IYT+++ + E+ + HP Sbjct: 240 NVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSHLTEVIHKFHP 296 >gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2846] Length = 297 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum DJO10A] gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68] gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F] gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp. longum F8] gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp. longum BBMN68] gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 311 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 256 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 308 >gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 311 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 43/53 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 256 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHP 308 >gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] Length = 303 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V ++++ +Y Q HP Sbjct: 241 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHP 297 >gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 294 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA+HLL G D+R +Q +LGH+ ++TTQIYT+++ R+++ + + HP Sbjct: 238 TPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHP 292 >gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 314 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 HTLRHS A+HLL + GDLR++Q LGH+ + TT IYT+++ +++ ++YDQ HP + D+ Sbjct: 246 HTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSRRGDQ 305 >gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 311 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+FAT LL+ G D+R++Q +LGHS LS+TQ+Y +V+ R+ E+Y HP Sbjct: 251 AITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVSRDRLKEVYRNAHP 307 >gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99] Length = 296 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V ++++ +Y Q HP Sbjct: 234 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHP 290 >gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188] gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188] gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2] gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2] gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] Length = 303 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAMHHP 301 >gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 305 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 303 >gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 249 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G +R +Q +LGH+ + TTQIYT V + E+Y HP Sbjct: 175 SPHTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVTVAALREVYWTAHP 229 >gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 327 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+ ATHL+ G DLR +Q +LGH+ L+TTQIYT+V ++R+ Y Q+HP Sbjct: 270 TGPHGFRHTAATHLIEGGADLRDVQELLGHATLATTQIYTHVTAERIKARYAQSHP 325 >gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4] gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4] Length = 328 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309 >gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] Length = 297 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHP 295 >gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] Length = 304 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HTLRH+FATHL+ G DLR++Q +LGHS + TTQIYT+++ + E++ HP Sbjct: 246 SISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHP 302 >gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] Length = 299 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHP 297 >gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL001PA1] gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA2] gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL060PA1] gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA2] gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL103PA1] Length = 300 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q +LGH L+TTQIYT+V+++R+ + Q HP Sbjct: 246 HGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHP 298 >gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] Length = 320 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHP 318 >gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] Length = 328 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309 >gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] Length = 298 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + ++ ++ HP Sbjct: 242 SPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAHLTKVMEKHHP 296 >gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624] gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624] Length = 369 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + + YD HP Sbjct: 301 HMLRHSFASHVLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLARAYDDAHP 353 >gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4] gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4] Length = 310 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 250 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHP 306 >gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c] gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c] Length = 422 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFA HLL G D+R +Q +LGH+ + TTQIYT V + ++ E+Y HP Sbjct: 331 SPHVLRHSFALHLLDGGADVRVVQELLGHASVRTTQIYTLVPADQLREVYAAAHP 385 >gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium aurimucosum ATCC 700975] gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 236 SPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHP 290 >gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 331 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V +M Y + P Sbjct: 268 PHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFP 321 >gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria AMMD] gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD] Length = 322 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHP 320 >gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1] gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei K96243] gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1] Length = 305 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 303 >gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 331 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V +M Y + P Sbjct: 268 PHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFP 321 >gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 329 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 268 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 327 Query: 64 DK 65 D+ Sbjct: 328 DE 329 >gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA3] gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA4] Length = 300 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q +LGH L+TTQIYT+V+++R+ + Q HP Sbjct: 246 HGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHP 298 >gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM 12804] gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii] Length = 310 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 254 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHP 308 >gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02] gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18] gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140] gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19] gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11] gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18] gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1] gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1] gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332] gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-92-679] gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2] gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae TCDC-NG08107] Length = 305 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 354 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 296 SPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHVLDERLKSMVRDLHP 350 >gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] Length = 304 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 246 TISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFLCEVHKSFHP 302 >gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160] gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160] Length = 318 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHP 316 >gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 293 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRHSFAT LL G DLR++Q +LGH LSTT YT+V+++R+ IY THP Sbjct: 237 TPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHP 291 >gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N] gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N] Length = 314 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 258 SPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAHHP 312 >gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium diphtheriae NCTC 13129] gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae] Length = 311 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT+V + + ++ ++HP Sbjct: 254 SPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLRFVWSRSHP 308 >gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] Length = 303 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q +LGH+ L+TTQ YT+V++ R+ IY + HP Sbjct: 249 HGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTARLSAIYQRAHP 301 >gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 376 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q +LGHS L++TQ+YT+V+ R+ Y Q HP Sbjct: 322 HALRHSAATHLLEGGADLRAVQELLGHSSLASTQVYTHVSVDRLRAAYRQAHP 374 >gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] Length = 299 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ + + EI+ +HP Sbjct: 243 SPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHP 297 >gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3] gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3] Length = 298 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DLR +Q +LGHS LS+TQIYT++ R+ E++ HP Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLKELHKMHHP 296 >gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 334 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 273 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 332 Query: 64 DK 65 +K Sbjct: 333 EK 334 >gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei DM98] Length = 299 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHP 297 >gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223] gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223] Length = 306 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305 Query: 66 K 66 K Sbjct: 306 K 306 >gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis 12822] gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis] Length = 326 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H+L + DLR++Q +LGH+ +STTQ+YT ++ + + YDQ HP +K Sbjct: 266 HVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRADRKTS 325 Query: 66 K 66 + Sbjct: 326 R 326 >gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1] gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1] Length = 307 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4] gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4] Length = 332 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR +Q +LGHS +STTQIYT+V +R+ + + HP Sbjct: 267 AVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTHVLEERLQILVETHHP--L 324 Query: 62 QKDKKN 67 K +KN Sbjct: 325 AKHRKN 330 >gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1] gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1] Length = 298 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + ++ ++ HP Sbjct: 242 SPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSHLAKVMEKYHP 296 >gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri A1501] gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501] gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLRS+Q +LGH+ + TTQIYT+++ + + ++YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQHLAKVYDHAHPRAKRK 294 >gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] Length = 297 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP ++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAKKES 296 Query: 65 K 65 K Sbjct: 297 K 297 >gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] Length = 302 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + ++ ++ HP Sbjct: 244 NVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSDVLNKFHP 300 >gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 316 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+++ G ++R++Q +LGH+ + TTQIYT+V+ R+ ++ HP Sbjct: 260 SPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHP 314 >gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13] gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653] gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653] Length = 307 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] Length = 315 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLR++Q +LGH+ L TTQIYT+V+ +R+ Y+ HP Sbjct: 261 HALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLRRSYEGAHP 313 >gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 350 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 38/56 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++++QTHP+ Sbjct: 267 ACHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAISHLQKVHEQTHPA 322 >gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] Length = 297 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP ++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAKKES 296 Query: 65 K 65 K Sbjct: 297 K 297 >gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 322 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT LL++G DL +I+ +LGH+ LS TQIYT+ + +R+ IY Q HP Sbjct: 266 SPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNSVERLKSIYKQAHP 320 >gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC] gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC] Length = 299 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHP 297 >gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87] gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87] Length = 299 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +++ + E+ + HP T Sbjct: 242 SPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMDRTYLREVLETYHPKKT 299 >gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1] gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1] Length = 307 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 321 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQ+YT ++ + + + YD HP Sbjct: 261 HMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTRLDFQHLAKAYDAAHP 313 >gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str. 513] gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M163/99/10] gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis B2/94] gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M292/94/1] gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33] gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1] gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94] gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99] gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915] Length = 307 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] Length = 310 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL+ G DLR++Q +LGHS LSTTQ YT+V+++R+ Y HP Sbjct: 256 HDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLRSSYQLAHP 308 >gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330] gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365] gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str. 686] gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330] gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365] Length = 307 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 304 >gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678] Length = 306 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305 Query: 66 K 66 K Sbjct: 306 K 306 >gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4] gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4] Length = 177 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATHLL G DLR +Q +LGHS +TTQIYT+V+++R+ Y HP Sbjct: 120 VSPHALRHSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAERLRAAYRGAHP 175 >gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 241 SPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDNLREVFATAHP 295 >gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. sepedonicus] gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp. sepedonicus] Length = 328 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V + ++Y HP Sbjct: 269 SPHIFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHP 323 >gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] Length = 292 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 46/55 (83%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP Sbjct: 236 SYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHP 290 >gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] Length = 297 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H +RH+FATHL++NG D+R++Q +LGHS LS+TQ+YT+V + + Y +HP Sbjct: 239 SIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEHLRNTYLNSHP 295 >gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185] gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185] Length = 306 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 246 HKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRAKKTQD 305 Query: 66 K 66 K Sbjct: 306 K 306 >gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144] Length = 296 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 43/54 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH+ LSTT YT+V+++++ ++Y HP Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQLRKVYLNAHP 290 >gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] Length = 308 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTAHP 305 >gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] Length = 309 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 252 SPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHP 306 >gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT++ R+ Q HP Sbjct: 249 TPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVHQAHP 303 >gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032] gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHP 299 >gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus] Length = 168 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 112 SPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHP 166 >gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] Length = 307 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLRS+Q LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 253 HGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLRSVYEQAFP 305 >gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] Length = 314 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 255 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHP 311 >gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis URRWXCal2] gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] Length = 328 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309 >gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT] gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT] Length = 292 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 46/55 (83%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP Sbjct: 236 SYTLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHP 290 >gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435] gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435] Length = 297 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP ++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKKES 296 Query: 65 K 65 K Sbjct: 297 K 297 >gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 247 HMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHP 299 >gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5] gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 314 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V +M Y + P Sbjct: 253 HMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYKKYFP 305 >gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium] Length = 311 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L +G DLR +Q +LGH+ +STTQ+YT V+++ + ++Y ++HP Sbjct: 246 SPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHP 300 >gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013] Length = 305 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 318 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ + HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHP 316 >gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 308 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 253 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHP 305 >gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484] gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484] Length = 322 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L+ G D+R +Q +LGH+ +STTQIY + + E Y HP Sbjct: 265 SPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYATARDEALREAYTAAHP 319 >gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 289 Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT RHSFATHLL NG DLR+IQ ++GH ++TT+IYT+++++ + + ++ HP Sbjct: 232 PHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQHLRSVIERFHP 285 >gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY] gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY] Length = 303 Score = 67.4 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 301 >gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] Length = 301 Score = 67.4 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS AT +L G DLR +Q +LGH+ +STTQIYT+V ++R+ +++Q HP Sbjct: 245 SPHGLRHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTERLKAVFNQAHP 299 >gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49] gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49] Length = 295 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DL S++ +LGH+ L++TQ+YT+ + + E+Y +THP Sbjct: 237 SPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTHNSIATLKEVYRKTHP 291 >gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] Length = 310 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 252 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATAHP 306 >gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDNAHPRAKRK 285 >gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] Length = 295 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 239 SPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLEERLQKLVEDHHP 293 >gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 314 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FAT +L+NG DLR++Q +LGH+ LSTTQIY +V + + + Y Q P T++ Sbjct: 246 HMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEHLQQDYRQFFPRATREST 305 Query: 66 KN 67 K Sbjct: 306 KE 307 >gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS] gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS] Length = 303 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ +++ HP Sbjct: 247 SPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAAHHP 301 >gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1] gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1] Length = 282 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 30/49 (61%), Positives = 37/49 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRHSFATH+L NG D+R+IQ +LGHS LSTTQIYT V + + Sbjct: 218 IRVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 266 >gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 290 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLR++Q +LGH+ ++ T+IYT+V + R+ +++ HP Sbjct: 232 SPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRLRQVHRAHHP 286 >gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c] gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c] Length = 324 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQHLQQLHAQHHP 322 >gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] Length = 308 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ ++TTQIYT+V +R+ ++ + HP Sbjct: 249 SPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEERLRDLVETAHP 303 >gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] Length = 302 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS+A+HLL D+R++Q +LGH LSTTQIY ++ + ++YD THP +K Sbjct: 242 SPHMLRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDFDHLAQVYDDTHPRAKRK 301 >gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium intracellulare ATCC 13950] Length = 209 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ + HP Sbjct: 152 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHP 206 >gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385] gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 301 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 240 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 299 Query: 64 DK 65 D+ Sbjct: 300 DE 301 >gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] Length = 315 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 261 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 313 >gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53] gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisA53] Length = 326 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 268 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 322 >gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. B076] gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] Length = 299 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] Length = 299 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 311 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLLS G D+R +Q +LGHS ++TTQIYT V + + ++Y HP Sbjct: 251 LDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVTADTLRDMYTTAHP 308 >gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 299 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] Length = 307 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] Length = 305 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 246 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHP 299 >gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] Length = 307 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato Max13] gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato K40] gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] Length = 328 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 309 >gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis Fe/C-56] gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 298 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T+IYT+V S ++E + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVASDTLIENFLSHHP 295 >gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013] Length = 305 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] Length = 297 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V +R+ ++ + HP Sbjct: 238 IPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVARERLKSLHKKHHP 295 >gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] Length = 292 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 46/55 (83%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP Sbjct: 236 SYTLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHP 290 >gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 317 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 41/56 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RH+ AT +L NG DLR IQ +LGH+ + TTQ+YT+V+ K++ E+Y+ THPS Sbjct: 254 ACHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRKKLSEVYEATHPS 309 >gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 2250] gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 299 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] Length = 307 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] Length = 307 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1] gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] Length = 307 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ] gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ] Length = 299 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGH+ ++TTQIYT+++ + + +YDQ HP Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQHLAAVYDQAHP 289 >gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 301 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FAT LL NG DL +++ ILGHS LS+TQIYT+ + + + ++++ HP +K Sbjct: 239 SPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQNLKKVFNNAHPRGRKK 298 Query: 64 DK 65 D+ Sbjct: 299 DE 300 >gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] Length = 307 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] Length = 301 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HT+RH+ ATH L NG DL++IQ++LGH LS+T IYT+V++ +IY Q HP Sbjct: 243 NVTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDATLKRKIYKQAHP 299 >gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] Length = 318 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 263 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHP 315 >gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] Length = 307 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 298 >gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] Length = 300 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 235 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 291 >gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 305 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] Length = 315 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHSFATHLL G +R +Q +LGH+ ++TTQIYT V + + E++ +HP Sbjct: 251 SPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAAVLREVFTLSHPRARGT 310 Query: 64 D 64 D Sbjct: 311 D 311 >gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ST398] Length = 298 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 46/60 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP ++++ Sbjct: 238 HKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKENE 297 >gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2] gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2] Length = 299 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL++G D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 245 HMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHP 297 >gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580] Length = 304 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHP 298 >gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] Length = 302 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 246 SPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHP 300 >gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 227 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/42 (71%), Positives = 36/42 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T HT RHSFATHLL G DLRS+Q++LGHS +STTQIYT+V+ Sbjct: 172 TPHTFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHVS 213 >gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 293 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL +I+ +LGH+ L+ TQ+YT+ + ++ I+DQ HP Sbjct: 237 SPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTHNSIDKLKAIFDQAHP 291 >gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] Length = 311 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQIYT V+ +++ E + HP Sbjct: 254 SPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYTMVSVQQLRETFAAAHP 308 >gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18] Length = 305 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRR 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 261 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHP 317 >gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii PYR-1] gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1] Length = 317 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 258 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTALREVWAGAHP 314 >gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 375 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 32/52 (61%), Positives = 38/52 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRHSFATHLL NG D+R IQ +LGHS TT+IYT+V ++ MEI D Sbjct: 321 VTPHMLRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFMEIKD 372 >gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] Length = 306 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS ATHLL G D+R +Q +LGH+ + TTQIYT V++ + E+Y HP Sbjct: 250 SPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHP 304 >gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 94_M4241A] gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] Length = 298 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 >gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5] gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB5] Length = 351 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V R+ + HP Sbjct: 293 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHP 347 >gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Rv] gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis AF2122/97] gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis F11] gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T17] gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CPHL_A] gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis K85] gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 210] gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN 4207] gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN R506] gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN V2475] gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis H37Rv] gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97] gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11] gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A] gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148] gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207] Length = 298 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 244 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 296 >gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 293 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ + ++ +++DQ HP Sbjct: 237 SPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTHNSLDKLKKVFDQAHP 291 >gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 325 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR +Q +LGH+ ++TTQIYT+V +RM + HP +K Sbjct: 255 SPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKAMVRDLHPLAEEK 314 >gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] Length = 322 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAVHHP 320 >gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568] gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399] gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196] Length = 305 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 300 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHL++NG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y HP Sbjct: 246 HMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNEYLKKTYMAHHP 298 >gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] Length = 305 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp. aureus ED133] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14] gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14] Length = 305 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14] gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14] Length = 319 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315 >gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 332 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+FAT LL G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP Sbjct: 272 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHP 328 >gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH60] gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus CGS00] gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11] gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] Length = 309 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT LL+NG D+R+IQ +LGH+ L TQ+YT+ + ++ +IY + HP Sbjct: 242 SPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTHNSIAKLQKIYSKAHP 296 >gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] Length = 318 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 263 HTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHP 315 >gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21193] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] Length = 312 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++ + +Y + HP + Sbjct: 251 SPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAERS 310 Query: 64 D 64 D Sbjct: 311 D 311 >gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44] gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44] Length = 318 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ + HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHP 316 >gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122] gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. Iowa] gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii str. Iowa] Length = 305 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q++LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] Length = 292 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 46/55 (83%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP Sbjct: 236 SYTLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHP 290 >gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus JKD6159] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9] gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] Length = 303 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RH+FATHLL +G DLR++Q +LGHS LSTTQIYT+V + + + Y Q P Sbjct: 247 HMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAHLQKDYRQFFP 299 >gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132] gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus CGS01] gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA131] gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA177] gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus T0131] gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21189] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus MW2] gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2] gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 317 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HT RHSFATHLL G +LR+IQ++LGH +STT+IYT+++ R+ + HP + Sbjct: 254 SPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNIRD 313 Query: 64 D 64 D Sbjct: 314 D 314 >gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris FB024-16] gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris FB024-16] Length = 361 Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++ + ++Y Q HP Sbjct: 307 HGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTAHLRQVYLQAHP 359 >gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus N315] gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299] gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115] gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1] gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315] gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu50] gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299] gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115] gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981] gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp. aureus CGS03] gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21172] Length = 298 Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC 35311] gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC 35311] Length = 299 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH LSTTQIY +V + + + Y HP Sbjct: 244 PHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQIYAHVTKESLQKNYRTFHP 297 >gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 204 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 139 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFP 195 >gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii] gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii] Length = 299 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G DLRS+Q++LGH+ ++TTQIYT+V+S ++ +I+ P Sbjct: 239 SPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDSSQLKKIHTACFP 293 >gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] Length = 334 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ H LRH+ ATHLL G DLR++Q LGH+ L+TTQ+YT+V+ R+ + Y Q HP Sbjct: 276 ASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHVSVDRLRQSYRQAHP 332 >gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 308 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL +G DLR++QS+LGH+ L TT+ YT+ + + + ++YD+ HP Sbjct: 255 HILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFD-QELRDVYDRAHP 306 >gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] Length = 315 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHSFATHLL G +R +Q +LGH+ ++TTQIYT V + + E++ +HP Sbjct: 251 SPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTATVLREVFTLSHPRARGT 310 Query: 64 D 64 D Sbjct: 311 D 311 >gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] Length = 312 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%), Gaps = 2/62 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP--SITQK 63 H LRHSFAT +L+NG D+RS+Q +LGHS LSTTQIYT+V + + + Y + P +T++ Sbjct: 250 HMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTRENLQKTYMKLFPRAKMTKE 309 Query: 64 DK 65 D+ Sbjct: 310 DQ 311 >gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] Length = 300 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q++LGH+ ++TTQIYT+V ++R+ ++ D+ HP Sbjct: 242 SPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANERLKQVVDKFHP 296 >gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] Length = 318 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ + HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHP 316 >gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246] gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246] Length = 305 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTNAYP 302 >gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS] gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS] gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS] gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS] Length = 318 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHP 315 >gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS] gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS] Length = 318 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHP 315 >gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa Temecula1] gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23] gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1] gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23] gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 324 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHP 322 >gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus] Length = 298 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121] Length = 297 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35243] gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35243] Length = 361 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++ + ++Y Q HP Sbjct: 307 HGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHP 359 >gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 311 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S +AH LRHSFAT LL NG DLR++Q +LGH +STTQIYT+V + ++ P+I Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303 >gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2] gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] Length = 310 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHL++N +R IQ +LGHS L+TTQIYT+++ M +Y THP Sbjct: 243 IQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYTDLDHTSMTNVYMDTHP 300 >gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 311 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S +AH LRHSFAT LL NG DLR++Q +LGH +STTQIYT+V + ++ P+I Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303 >gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829] gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 337 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RHSFAT LLS+G DLRS+Q +LGH+ L+TTQIYT+V+ + + + +P Sbjct: 280 ATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANP 335 >gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5] gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5] Length = 305 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKHLEAVYTTAYP 302 >gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] Length = 297 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +++ Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 Query: 65 K 65 + Sbjct: 297 E 297 >gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia sennetsu str. Miyayama] gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia sennetsu str. Miyayama] Length = 307 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 39/52 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRHSFATHLL G +R IQ +LGH+ L++T++YT +N++ +ME Y Q Sbjct: 249 TPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNAESLMEKYKQ 300 >gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 349 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATH+L G D+R++Q +LGHS ++TT +YT V + E+Y +HP Sbjct: 292 SPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYATSHP 346 >gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 296 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H LRHSFATHLL+ G DL ++ +LGH+ L++TQ+YT+ + K + ++Y + HP Sbjct: 235 FKTSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTHNSIKALKDVYSKAHP 292 >gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710] gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190] gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902] Length = 305 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12] gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12] Length = 324 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHP 322 >gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442] gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 305 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 324 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 267 VSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHP 322 >gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] Length = 340 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 282 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 336 >gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18] gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB18] Length = 320 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315 >gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H] gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H] Length = 311 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFA+HLL++G DLR++Q +LGH+ ++TTQIYT V S+R+ + HP Sbjct: 245 SPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSERLRQAVAAHHP 299 >gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] Length = 296 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 42/64 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ + + Y HP + Sbjct: 232 LKKSPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRM 291 Query: 61 TQKD 64 T K+ Sbjct: 292 TNKE 295 >gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 297 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+NG DL S++ +LGHS L++TQ+YT+ + + ++Y + HP Sbjct: 240 SPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHP 294 >gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] Length = 319 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315 >gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 312 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL G D+R IQ +LGHS +STTQIYT +N K+ +I HP Sbjct: 250 TPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQKKILSTKHP 304 >gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae TW-183] gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183] gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN] Length = 299 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + ++E + HP Sbjct: 240 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHP 296 >gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149] gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33] Length = 305 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] Length = 361 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++ + ++Y Q HP Sbjct: 307 HGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHP 359 >gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 349 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATH+L G D+R++Q +LGHS ++TT +YT V + E+Y +HP Sbjct: 292 SPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYTTSHP 346 >gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 313 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ + HP Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHP 310 >gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ + HP Sbjct: 242 SPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLADVLNTFHP 296 >gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae CWL029] gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae J138] gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae AR39] gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39] gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138] Length = 301 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + ++E + HP Sbjct: 242 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHP 298 >gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865] gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865] Length = 298 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q +LGH ++TTQIYT+V Sbjct: 234 SATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276 >gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 302 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 30/53 (56%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH+ ATHLL G DLR++Q +LGH+ L TTQ+YT+V+++R+ E Y HP Sbjct: 248 HTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTERLRESYRTAHP 300 >gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594] Length = 305 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum TLS] gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum TLS] Length = 336 Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATH+L+ G DL+S+ +LGHS L+TT++YT+V R+ + Y + HP Sbjct: 282 HMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYTHVTFNRLRDAYTKAHP 334 >gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] Length = 306 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 250 SPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFIREVHKTFHP 304 >gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL G +R +Q +LGH+ ++TTQIYT V+ + E++ THP Sbjct: 259 SPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNTLREVHALTHP 313 >gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] Length = 327 Score = 66.6 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ HP Sbjct: 271 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALHHP 325 >gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] Length = 312 Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 42/63 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V + + ++ HP Q Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLETGLYHLVNEHHPLADQD 309 Query: 64 DKK 66 K Sbjct: 310 KAK 312 >gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1] gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila psittaci 6BC] Length = 312 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + +D++HP Sbjct: 256 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHDESHP 310 >gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 312 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++ + +Y + HP + Sbjct: 251 SPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAERS 310 Query: 64 D 64 D Sbjct: 311 D 311 >gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] Length = 309 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R++ ++ HP Sbjct: 247 SPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHP 301 >gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] Length = 286 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 280 >gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016] gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 295 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY+ V K ++ E+Y ++HP Sbjct: 239 AFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHP 293 >gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica] Length = 472 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 40/60 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + E+++QTHP+ Q + Sbjct: 393 HLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKEVHEQTHPAERQSKQ 452 >gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] Length = 314 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHP 312 >gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] Length = 286 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 280 >gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] Length = 306 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L++G DLR +Q +LGH L +TQIYT+V+ +++ E Y QTHP Sbjct: 245 HMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHP 297 >gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555] gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555] Length = 292 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY+ V K ++ E+Y ++HP Sbjct: 236 AFTLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHP 290 >gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028] gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045] Length = 296 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290 >gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 334 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V R+ + HP Sbjct: 270 SPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHVMEDRLRQTVFDFHP 324 >gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium SS3/4] Length = 284 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 T HTLRHSFA HLLSNG D+R++Q+++GHS L++TQ+YT + E Y HP Sbjct: 227 TPHTLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYAMDSAVREAYQGAHP 282 >gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255] gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255] Length = 319 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 261 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 315 >gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909] Length = 296 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290 >gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] Length = 313 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V + + ++ HP Sbjct: 255 SPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQHLKDLVLTHHP 309 >gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] Length = 286 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 227 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 280 >gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHP 302 >gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] Length = 276 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT+++ + ++Y + P Sbjct: 219 VTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHIDDGTLKDMYKKHRP 274 >gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1] gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1] Length = 283 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L NGGD+R IQ ILGHS ++TTQIYT+++ + ++Y + P Sbjct: 226 VTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLDDNALKDMYFKHRP 281 >gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str. Malish 7] gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 305 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 332 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + Y + HP Sbjct: 264 VSPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLVELKRQYKKAHP 319 >gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] Length = 318 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHTLREVWAGAHP 315 >gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945] gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136] Length = 305 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304] gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579] Length = 305 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 244 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 303 Query: 64 DK 65 D+ Sbjct: 304 DE 305 >gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi] Length = 267 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 206 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 260 >gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] Length = 299 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 245 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHP 297 >gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa] Length = 302 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD P Q + Sbjct: 237 HMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDAPIPRAKQGQR 296 >gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155] gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155] Length = 424 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/43 (72%), Positives = 35/43 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL G DLR+IQ +LGH +STTQIYT+V S Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLS 411 >gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 296 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL+ G DL +++ +LGHS L+ TQ+YT+ + ++ E+Y + HP Sbjct: 235 VKKSPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTHNSIAQLKEVYLKAHP 292 >gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] Length = 305 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] Length = 296 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290 >gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 294 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ + +++ +++Q HP Sbjct: 238 SPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAVFEQAHP 292 >gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P] gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P] Length = 301 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ + + IY Q HP +K Sbjct: 243 HILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKNIYKQAHPRSNKK 300 >gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87] gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87] Length = 296 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHP 290 >gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] Length = 340 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS ATHLL G D+R +Q +LGH+ + TTQIYT V++ + E+Y HP Sbjct: 284 SPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHP 338 >gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640] gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 302 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP ++ Sbjct: 241 SPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQ 300 Query: 64 DK 65 +K Sbjct: 301 EK 302 >gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462] Length = 182 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 40/50 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ + Sbjct: 119 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 168 >gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] Length = 292 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLLSN DLR IQ +LGH+ ++TT+IYT+V R+ I+ + P Sbjct: 237 PHVLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFP 290 >gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 315 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATH+L+ G ++R++Q +LGH+ + TTQ+YT+V R+ I+ HP Sbjct: 259 SPHTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHVEHSRLKSIHRDCHP 313 >gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] Length = 291 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL NG DLR IQ +LGHS +STT+IYT V K+ + HP Sbjct: 237 HMLRHSFATHLLENGCDLRYIQELLGHSSVSTTEIYTKVQLKQKQNTILKFHP 289 >gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 323 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q ILGH+ L+TTQ YT+++ ++ +Y Q HP Sbjct: 269 HGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHP 321 >gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469] gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469] Length = 270 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRHSFATHLL G D+R IQ +LGH L TTQIYT+V +K Sbjct: 216 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANK 261 >gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104] gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. avium ATCC 25291] gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104] Length = 313 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ + HP Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHP 310 >gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum STM815] gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815] Length = 315 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 259 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAAHHP 313 >gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] Length = 292 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL++I+ +LGH+ L+ TQ+YT+ + +++ EI+ Q HP Sbjct: 236 SPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTHNSMEKLKEIFLQAHP 290 >gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H LRH+FATHLL+NG DL +++ +LGH+ L++TQ+YT+ + + +Y HP Sbjct: 237 TSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAELGRVYKNAHP 292 >gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] Length = 323 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q ILGH+ L+TTQ YT+++ ++ +Y Q HP Sbjct: 269 HGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHP 321 >gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 255 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRHSFATHLL G D+R IQ +LGH L TTQIYT+V +K Sbjct: 201 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANK 246 >gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 260 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 314 >gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 298 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + ++ HP Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSHLKDVMQSYHP 296 >gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] Length = 282 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 226 SPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKTMHAKHHP 280 >gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1] Length = 306 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ ++TT+IYT+V + + + +Q HP Sbjct: 243 SPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPKVRLVNQHHP 297 >gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498] Length = 307 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V R+ + ++ HP + Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLEARLHRLVNEHHPLV 306 >gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D/UW-3/CX] gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis A/HAR-13] gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 434/Bu] gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/Jali20/OT] gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/TZ1A828/OT] gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70] gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s] gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D(s)2923] gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2tet1] gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia trachomatis A/HAR-13] gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu] gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT] gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2] gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/150] gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9768] gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11222] gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11074] gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/11023] gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9301] Length = 315 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+THP Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 310 >gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] Length = 311 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+FAT LL G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP Sbjct: 251 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHP 307 >gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276] gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276s] Length = 315 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+THP Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 310 >gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HLL G D+RS+Q +LGHS ST Q+Y + + + +YD HP Sbjct: 240 TPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHP 294 >gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila L48] gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 299 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 323 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q ILGH+ L+TTQ YT+++ ++ +Y Q HP Sbjct: 269 HGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHP 321 >gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 42/62 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFAT LL+ G D+R +Q +LGHS ++TTQ YT+++ + + Y ++HP T Sbjct: 238 EVTPHIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHISKNTLKDAYMKSHPFAT 297 Query: 62 QK 63 +K Sbjct: 298 KK 299 >gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] Length = 314 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHP 312 >gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii] Length = 295 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 293 >gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 313 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 41/59 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHS AT +L G DLR +Q +LGH+ ++TTQIYT+V ++R+ +Y + HP +D Sbjct: 255 HGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLRVVYKRAHPRSGSQD 313 >gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] Length = 299 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHL+ G DLR++Q +LGHS ++TT+IYT+++ + I + HP Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRDYLRGIITEFHP 297 >gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 303 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+ RHSFATHLL G D+R +Q +LGHS + TTQIYT V+ + E + ++HP Sbjct: 246 SPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHP 300 >gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf0-1] gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHP 289 >gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 295 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 293 >gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC] gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC] Length = 317 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+THP Sbjct: 256 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 312 >gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 251 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 305 >gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT+RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R+ + HP Sbjct: 244 SISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAAHQDHHP 300 >gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 263 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H+LRHSFATHLL G LR +Q +LGH L+TTQ Y + ++ + + Y+ HP Sbjct: 203 TPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRYLRITAQHLKKSYESAHP 257 >gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] Length = 312 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG D+ IQ +LGH+ LSTTQIYT V ++++ + + HP Sbjct: 252 SPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306 >gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 295 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 293 >gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 333 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 44/53 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RHSFA+H+L + DLR++Q +LGH+ +++TQIYT+++S+ + + YD+THP Sbjct: 274 HMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDSQHLAQAYDKTHP 326 >gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] Length = 328 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 43/64 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH FA+H+L++G DLR +Q++LGH+ ++TTQIYT+V R+ + HP K Sbjct: 263 SPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLARLK 322 Query: 64 DKKN 67 + N Sbjct: 323 GEGN 326 >gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] Length = 290 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ +STT+IYT V ++R+ I + HP Sbjct: 234 SPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAERLKSIVIEHHP 288 >gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] Length = 316 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHSFATHLL G +R +Q +LGH+ ++TTQIYT V + + E++ +HP Sbjct: 251 SPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVTATVLREVFTVSHPRARGT 310 Query: 64 DK 65 D+ Sbjct: 311 DE 312 >gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG D+ IQ +LGH+ LSTTQIYT V ++++ + + HP Sbjct: 252 SPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306 >gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC BAA-286] Length = 294 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 43/56 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H LRHSFAT +L+NG D+ +++ +LGHS L+ T+IYT+ + + + +IY++ HP Sbjct: 237 TSPHVLRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEELKKIYNKAHP 292 >gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 327 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS AT +L G DLR +Q +LGH+ L+TTQIYT+V+S+R+ +++Q HP Sbjct: 271 SPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHP 325 >gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC] gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila caviae GPIC] Length = 312 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + ++++HP Sbjct: 254 SITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHEESHP 310 >gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 294 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLR+IQ +LGH + TT++YT+++ + + E HP Sbjct: 235 NISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEHLREAILNHHP 291 >gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] Length = 300 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL++G DLR++Q +LGH LS+TQ+YT+V + + + Y HP Sbjct: 246 HMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEHLRQTYMAYHP 298 >gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] Length = 304 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 248 SPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFVKEVHRTFHP 302 >gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] Length = 308 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 45/64 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + + Y + HP +K Sbjct: 243 SPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRADRK 302 Query: 64 DKKN 67 ++ + Sbjct: 303 EEDD 306 >gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries] gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries] Length = 312 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 251 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 305 >gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens] gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens] gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 289 >gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] Length = 293 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+ +Y Q HP Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHP 291 >gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia amoebophila UWE25] gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25] Length = 329 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ +LGH LSTT IYT V++K ++Y HP Sbjct: 272 VTPHTIRHTIATHWLENGMDLKTIQLLLGHRSLSTTTIYTQVSTKLKQKVYADAHP 327 >gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] Length = 303 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V + + + Y P +K Sbjct: 245 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRENLQKNYQNFFPRAKKK 302 >gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 295 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T+ H LRHSFATHLL+ G DL ++ +LGH+ L++TQ+YT+ + + + ++Y + HP Sbjct: 234 LKTSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTHNSVQALKDVYSKAHP 291 >gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] Length = 293 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+ +Y Q HP Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHP 291 >gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] Length = 294 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L++G DL SI+ +LGHS L++TQ+YTN + + +Y HP Sbjct: 240 SPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTNSSLAELKNVYQNAHP 294 >gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] Length = 299 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT RH+ ATHLL G +LR +Q LGH+ +STTQIYT+V+++R+ + HP Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHP 297 >gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603] gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603] Length = 333 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATHLL G DLRS+Q ILGHS L TTQ YT+V R+ + Y HP Sbjct: 279 HDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRYTHVTMTRLRDTYAHAHP 331 >gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens] Length = 465 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++++QTHP+ + ++ Sbjct: 391 HLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKKVHEQTHPAERKPEQ 450 Query: 66 K 66 K Sbjct: 451 K 451 >gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis] Length = 106 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 52 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFP 104 >gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] Length = 220 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT++ R+ Q HP Sbjct: 165 HAMRHTFATDLLEGGADLRSVQELLGHASLSTTQIYTHLTPDRLKRAVAQAHP 217 >gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP] gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP] Length = 276 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/49 (63%), Positives = 36/49 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRHSFATH+L NG D+R IQ ILGHS LSTTQIYT V + + Sbjct: 213 IKVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKVTVEHL 261 >gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 329 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH++ NG D+R +Q LGH+ LS+TQIYT+V+ ++ + Y Q HP Sbjct: 273 SPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVSLGKLKDSYTQAHP 327 >gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] Length = 291 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289 >gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M] gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M] Length = 313 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP T Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313 >gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] Length = 167 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+ THP+ Sbjct: 86 SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 143 >gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] Length = 308 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 250 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 304 >gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 301 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL+ G D+R +Q +LGHS ++TTQ+YT V + + ++Y HP Sbjct: 241 VEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVTADTLRDVYVSAHP 298 >gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] Length = 295 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 239 SPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHP 293 >gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L G D+R++Q +LGH+ + TTQ+YT+V+ ++E Y +HP Sbjct: 254 HTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHP 306 >gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 301 >gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 4/64 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL G DL SI+ +LGHS ++ TQ YT+ + ++ E+Y HP + Sbjct: 238 SPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTHSSMAKIKEVYKSAHP----R 293 Query: 64 DKKN 67 +KKN Sbjct: 294 EKKN 297 >gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] Length = 292 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQTHP 58 A TLRHSFA HLL NG D++S+Q +LGH LS TQIY++V ++ ++Y ++HP Sbjct: 236 AFTLRHSFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNKIAQVYKKSHP 290 >gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] Length = 316 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+ RHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E++ + HP Sbjct: 259 SPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVTVDTLREVWAECHP 313 >gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9] Length = 307 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATH+L G D+R++Q +LGH+ + TTQ+YT+V+ ++E Y +HP Sbjct: 252 HTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHP 304 >gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STTQIYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQIYTHV 162 >gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 302 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS ATHLL G DLR IQ +LGHS ++TTQIYT+V + E Y HP Sbjct: 246 HTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTHLQEEYRSAHP 298 >gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 289 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATHLL+ G DLRS+Q LGH+ +TQIYT+V+ +R+ + Y + HP Sbjct: 232 SAPHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVERLRDTYRRAHP 287 >gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans Agy99] gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99] Length = 313 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP T Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313 >gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL G DLR+IQ +LGH+ +STTQIYT++ ++ ++ HP + +K Sbjct: 236 SPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHP-LAKK 294 Query: 64 DKK 66 +KK Sbjct: 295 EKK 297 >gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 299 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT RH+ ATHLL G +LR +Q LGH+ +STTQIYT+V+++R+ + HP Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHP 297 >gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] Length = 311 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT R+ + HP T+ Sbjct: 249 SPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYTATRPDRLAGLVASAHPLATK 307 >gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] Length = 146 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+ THP+ Sbjct: 65 SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 122 >gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 291 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHP 58 ++TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 235 SYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHP 289 >gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] Length = 299 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 289 >gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] Length = 304 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V + + + Y P +K Sbjct: 246 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQAFFPRAKKK 303 >gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia] gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] Length = 312 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 251 SPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHP 305 >gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_05I22] Length = 314 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H +RHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT+ R+ + HP +++ Sbjct: 255 TPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYTSSRPDRLAGLVADAHPLASKR 314 >gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] Length = 297 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 40/54 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+ ++ ++Y HP Sbjct: 237 PHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSKDQLRKVYLNAHP 290 >gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium] Length = 163 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+RS+Q +LGH L TTQIYT+V Sbjct: 120 SVSCHTLRHSFATHLLESGADIRSVQELLGHESLETTQIYTHV 162 >gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] Length = 294 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT+IYT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTTFEELKKVYNQAHP 292 >gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] Length = 342 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 37/56 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++ QTHP+ Sbjct: 253 TCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKAVHHQTHPA 308 >gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium extorquens AM1] gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium extorquens AM1] Length = 365 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLLSNG DLRSIQ +LGH+ L TT+IY + +++R + HP Sbjct: 298 SPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRRTHGMVRDLHP 352 >gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] Length = 316 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 258 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 312 >gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii ATCC 12478] Length = 313 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP T Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313 >gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] Length = 299 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHL+++G DLR +Q +LGH+ + TTQIYT+V + + + +Q+HP Sbjct: 238 TVSPHVLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEHLHTLLNQSHP 294 >gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 293 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] Length = 299 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS ATH+L + DLR++Q +LGH+ +STTQIYT+++ + + + YD HP +K Sbjct: 240 HKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKK 297 >gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] Length = 312 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSF THL+ G D+R +Q +LGH+ ++TTQIYT + ++ M ++ HP Sbjct: 252 SPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAENMRRVWAGAHP 306 >gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 46/61 (75%), Gaps = 1/61 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATH+L+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP +K+ Sbjct: 237 PHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPR-AKKE 295 Query: 65 K 65 K Sbjct: 296 K 296 >gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 293 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] Length = 332 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHS+ATHLL G D+R++Q +LGH+ ++TTQ+YT V + E + HP Sbjct: 272 SPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQVTVDSLRETHAGAHP 326 >gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862] Length = 305 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH RH++AT +L+NG DLR++Q +LGHS LSTTQIYT+V + + + Y P T+ Sbjct: 247 SAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRDFFPRATE 305 >gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] Length = 294 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304] gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304] Length = 318 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS ATHL+ G D+R++Q +LGH+ ++TTQ+YT+++ + ++E Y HP Sbjct: 263 HTLRHSCATHLIRGGADVRTVQELLGHASVTTTQLYTHISPQTLIETYITAHP 315 >gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS] gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS] Length = 304 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DLR +Q +LGHS + TQIYT+++ + E++ HP Sbjct: 248 SPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHP 302 >gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] Length = 294 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] Length = 317 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR IQ++LGH +STT+IYT+++ R+ + HP Sbjct: 252 TISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNI 311 Query: 62 QKD 64 + D Sbjct: 312 RDD 314 >gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 295 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFP 293 >gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup] gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup] Length = 312 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V + + + ++ HP Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHP 304 >gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] Length = 294 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] Length = 294 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC] gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC] Length = 298 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRH+FATHLL N DLR IQ +LGH+R+++T+IYT+V + +ME + HP Sbjct: 241 SPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHVAADTLMENFLSYHP 295 >gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium] Length = 308 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHS+ATHLL+ G D+R +Q +LGH+ ++TTQIYT + ++ E Y THP T Sbjct: 250 VSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRAT 308 >gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 304 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 250 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKFHP 302 >gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] Length = 308 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 250 SPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHP 304 >gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] Length = 304 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR++Q +LGHS + TQ+YT+++ + E++ HP Sbjct: 248 SPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHIDRSFIKEVHKTFHP 302 >gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] Length = 309 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHP 307 >gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM 519] gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium sticklandii] Length = 334 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/50 (60%), Positives = 39/50 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T H LRH+FATHLL NG ++R +Q +LGHS +STTQIYT+ NSK + E Sbjct: 276 NVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHSNSKDLDE 325 >gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 41/54 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATH+L+ G DLR++QS+LGH LSTT YT+V ++++ ++Y HP Sbjct: 237 PHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQLRKVYLNAHP 290 >gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 295 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/53 (58%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFP 293 >gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118] gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118] Length = 306 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V +R+ ++ Q HP Sbjct: 250 SPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARERLKVLHAQHHP 304 >gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] Length = 308 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FA+HLL+NG DLR IQ +LGH+ ++TT+IYT+V + + + + HP Sbjct: 250 VSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDENIKSLVFEHHP 305 >gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3] gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus horikoshii OT3] Length = 285 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ T H LRHSFATH+L G D+R IQ +LGH+ LSTTQIYT V +K + E ++ Sbjct: 221 LNVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEK 275 >gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] Length = 299 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + +I HP Sbjct: 241 TVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHP 297 >gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] Length = 321 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H+LRHS+ATHLL G DLR++Q +LGH+ +STTQ+YT+V+ + Y HP ++ Sbjct: 261 HSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTHVDRTHVRMAYLAAHPRADRRHS 320 Query: 66 K 66 + Sbjct: 321 R 321 >gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] Length = 298 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHP 289 >gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] Length = 294 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEELKKVYNQAHP 292 >gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] Length = 299 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V +R+ ++++ HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARERLKALHERHHP 297 >gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++ QTHP+ ++ Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRTA 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 306 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQ+YT++N + + +Y S+ +K Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 303 Query: 64 DK 65 K Sbjct: 304 SK 305 >gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] Length = 296 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DL ++ +LGH+ LSTTQ Y++ + ++ EI++Q HP Sbjct: 240 SPHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSHNSLDQIKEIFNQAHP 294 >gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 288 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 HTLRHSFATHL+ +G DLRS+Q +LGHS ++TT+IYT+V+S + + + HP T+ + Sbjct: 227 HTLRHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-HPKYTKHTR 285 Query: 66 KN 67 +N Sbjct: 286 QN 287 >gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] Length = 297 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 40/49 (81%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++T HTLRHS+ATHLL+ G DLRS+Q +LGH+ ++TTQIYT++ K + Sbjct: 239 VTTKIHTLRHSYATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDKDL 287 >gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G R +Q +LGHS ++TTQIYT+V+++ + + + +HP Sbjct: 251 HTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHP 303 >gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] Length = 305 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFATHLL G R +Q +LGHS ++TTQIYT+V+++ + + + +HP Sbjct: 251 HTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHP 303 >gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd Length = 290 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 29/50 (58%), Positives = 42/50 (84%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Sbjct: 240 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 289 >gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] Length = 304 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS AT ++ G DLR +Q +LGHS L+TTQIYT+V++ R+ E++ + HP Sbjct: 248 SPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHP 302 >gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/57 (54%), Positives = 38/57 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHLL+NG DLR+IQ +LGH LSTT+ YT V + HP Sbjct: 235 NVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHP 291 >gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT++ +R+ + HP Sbjct: 248 SPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHILDERLKSMVRDLHP 302 >gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] Length = 301 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+++ + ++ + HP Sbjct: 243 TISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHIDHSYLSQVVNTYHP 299 >gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2] Length = 304 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RH+FAT LL+ G D+RS+Q +LGH+ L+TTQ+YT++ +RM + + HP Sbjct: 246 TPHAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPERMKDALRRAHP 300 >gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 278 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQ+YT++N + + +Y S+ +K Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 275 Query: 64 DK 65 K Sbjct: 276 SK 277 >gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] Length = 316 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q ++GH+ ++TTQIYT V + + E++ HP Sbjct: 259 SPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHP 313 >gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619] gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619] Length = 299 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 293 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT LL+ G DL +I+ +LGH+ L TQ+YT+ + +R+ IY Q HP Sbjct: 237 SPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLKSIYKQAHP 291 >gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] Length = 286 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 40/57 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + T H LRHSFATH+L G D+R IQ +LGH+ LSTTQIYT V +K + E ++ + Sbjct: 221 IKVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVERAN 277 >gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] Length = 309 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL G DLR++Q +LGH+ +STT+IYT+V +R+ + + HP Sbjct: 250 SPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKALVNTHHP 304 >gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] Length = 297 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHL +G +L +I+ +LGHS L+ TQIYT+ + +R+ +IY Q HP Sbjct: 238 SPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTHHSIERLKKIYQQAHP 292 >gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937] gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937] Length = 139 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 40/56 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RH+ ATH+L NG DLR IQ++LGH+ + +TQIYT V+ + + ++ THP+ Sbjct: 47 SCHLFRHAMATHMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 102 >gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] Length = 314 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 255 SPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAMVRDLHP 309 >gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5] gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5] Length = 286 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 31/48 (64%), Positives = 37/48 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRHSFATH+L G D+R IQ +LGHS LSTTQIYT V++K + E Sbjct: 224 TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271 >gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 307 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+FAT +L++G D+R +Q +LGHS +STTQ YT+V +R+ ++Y Q P +K Sbjct: 247 SPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYTHVTLERLKKVYSQAFPHSGKK 306 Query: 64 D 64 D Sbjct: 307 D 307 >gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] Length = 307 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 38/52 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRHSFATHLL G +R IQ +LGH+ L++T +YT +N++ +ME Y Q Sbjct: 249 TPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTKLNAESLMEKYRQ 300 >gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1] gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1] Length = 282 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/49 (61%), Positives = 36/49 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRHSFATHLL G D+R+IQ +LGHS LSTTQIYT V + + Sbjct: 218 VEVTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 266 >gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102] gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102] Length = 215 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 157 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 212 >gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] Length = 311 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL+NG ++ IQ +LGH LSTTQ+YT+V S+++ ++ + HP K Sbjct: 251 SPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQLRDVLSRFHPMSKSK 310 Query: 64 D 64 + Sbjct: 311 N 311 >gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] Length = 294 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 256 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHP 310 >gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] Length = 302 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKTLHAVHHP 300 >gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] Length = 292 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 289 >gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN] gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae Br4923] gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae] gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae] gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 316 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q ++GH+ ++TTQIYT V + + E++ HP Sbjct: 259 SPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHP 313 >gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114] gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114] Length = 293 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 235 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 290 >gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae] gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae] Length = 339 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH +STTQIYT+V Sbjct: 277 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317 >gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265] gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265] Length = 306 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FATHLL G DLR++Q +LGHS + TQIY++++ + E++ HP Sbjct: 248 TVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHIDRSFVKEVHRSFHP 304 >gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 359 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++ QTHP+ ++ Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRTA 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107] Length = 221 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/51 (58%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL NG LR IQS+LGHS TT++YT++ +K M ++ Sbjct: 162 EVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTHITTKGMEQL 212 >gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330] Length = 294 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH+ L+TT+IYT+V + R+ ++ D HP Sbjct: 238 SPHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVRLKQVVDTHHP 292 >gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] Length = 299 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1] gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1] Length = 299 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 299 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + + HP Sbjct: 240 NISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMAKFHP 296 >gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1] gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1] Length = 299 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] Length = 304 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FATHLL G DLR++Q +LGH + TTQIYT+++ + E++ HP Sbjct: 248 SPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRLFIKEVHKTFHP 302 >gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 296 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ + + Y HP T K Sbjct: 235 SPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRETNK 294 Query: 64 D 64 + Sbjct: 295 E 295 >gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 292 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G LR +Q ++GH L TTQ Y +V ++RM Y HP Sbjct: 227 SPHTLRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHP 281 >gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16] gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16] Length = 359 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 41/50 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+ Sbjct: 281 HMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDK 330 >gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] Length = 292 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT+RHSFATHLL NG +LR IQ +LGH+ +S+T YT+++ + +D+ HP Sbjct: 234 SLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHISRIHLQNAFDRYHP 290 >gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1] gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1] Length = 312 Score = 65.1 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V + + + ++ HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHP 304 >gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 310 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQ+YT++N + + +Y S+ +K Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSLEKK 306 Query: 64 DK 65 K Sbjct: 307 PK 308 >gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 424 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 31/43 (72%), Positives = 35/43 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL G DLR+IQ +LGH +STTQIYT+V S Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLS 411 >gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] Length = 305 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E + HP Sbjct: 249 SPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFIKEAHKTFHP 303 >gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] Length = 278 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 31/49 (63%), Positives = 36/49 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +S T H LRHSFATH+L G D+R IQ ILGHS LSTTQIYT V + + Sbjct: 215 VSVTPHMLRHSFATHMLERGVDIRVIQEILGHSSLSTTQIYTKVTVEHL 263 >gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703] gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703] Length = 292 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHH 289 >gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] Length = 303 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + E + HP Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALIKYHP 295 >gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes WB4] gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes WB4] Length = 302 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+++ + + + HP Sbjct: 236 NVSPHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHIDVHFLRQTVLECHP 292 >gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440] gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae 642] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 328 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHSFATHLL +G + IQ ILGH+ LSTTQIYT++ +K++ + +HP ITQ Sbjct: 267 SPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKKLKDKLANSHP-ITQ 324 >gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] Length = 289 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL+++G DLR +Q +LGH L+TT+IYT+V + R+ ++ +Q HP Sbjct: 233 SPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANARLKQVVEQYHP 287 >gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 303 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + E + HP Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALVKYHP 295 >gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia] Length = 319 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/44 (65%), Positives = 35/44 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVE 306 >gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 298 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295 >gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHP 289 >gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1] Length = 308 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATHLL +G L+ +Q LGH L+TTQIY V++ M E Y HP Sbjct: 245 TPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVSASWMKESYAAAHP 299 >gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS ATH++ NG DLR++Q+ILGH+ +STTQIYT++ R+ +++ HP ++ Sbjct: 248 SPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKRR 307 Query: 64 D 64 + Sbjct: 308 N 308 >gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] Length = 323 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL G DLR +Q +LGH+ +STTQIYT++ S + + + HP Sbjct: 248 SPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHIGSGSLAKTLEHRHP 302 >gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] Length = 139 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y Q P Sbjct: 85 HMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADY-QNFP 136 >gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523] Length = 292 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 44/59 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 234 PHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLANVFDKAHPRAKKK 292 >gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] Length = 318 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH LS+TQIYT+V + + + Y P Sbjct: 244 HMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFP 296 >gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT LL N DLRSIQ +LGH +STT IYT+V +++++ Y++ HP ++ Sbjct: 234 TPHMLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQILDDYNKYHPGNARR 293 Query: 64 DK 65 K Sbjct: 294 KK 295 >gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334] gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang] gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334] gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang] gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W] gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II] Length = 298 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295 >gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] Length = 294 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL+NG D++++Q +LGH LS+TQIYT+V + + Y P Q++ Sbjct: 223 PHMLRHTFATHLLNNGADMKTVQELLGHVSLSSTQIYTHVTKDALQQNYQLYFPRAKQEE 282 >gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 298 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295 >gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 304 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 248 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFP 300 >gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens SBW25] gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 237 HMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 289 >gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae B728a] gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_17D04] Length = 361 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATH+L+ G DLR +Q +LGH+ +STTQIYT R+ + HP Sbjct: 299 SPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTKTRPDRLAGLVAAAHP 353 >gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] Length = 308 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V ++ E Y HP Sbjct: 250 SPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAAHP 304 >gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] Length = 300 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] Length = 300 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 291 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 39/54 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RH+FATHLL G DLRS+Q +LGH+ L TTQIYT+++ + + E + + HP Sbjct: 236 PHLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHP 289 >gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus S26/3] gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3] Length = 312 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + ++++HP Sbjct: 256 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310 >gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit 7] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 30/49 (61%), Positives = 38/49 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL NG DLR IQ +LGH+ STT+IYT+V+ + +I Sbjct: 290 SVHTLRHSFATHLLENGTDLRYIQELLGHASPSTTEIYTHVSERDFAKI 338 >gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208] Length = 300 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] Length = 299 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 296 >gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 392 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RHSFATHLL D+R IQ +LGHS L TTQ+YT++N + + +Y S+ + Sbjct: 327 VSPHAFRHSFATHLLQENVDIRFIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSL-E 385 Query: 63 KDKK 66 KDKK Sbjct: 386 KDKK 389 >gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2] gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2] Length = 279 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ T H LRHSFATH+L G D+R IQ +LGH+ LSTTQIYT V +K + E ++ Sbjct: 214 INLTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEK 268 >gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL J2-003] Length = 259 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 205 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 257 >gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] Length = 300 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] Length = 298 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295 >gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001] gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001] gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG] Length = 298 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 243 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 295 >gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium] Length = 163 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL NG D+R++Q +LGH+ + TTQIYT V Sbjct: 120 PVTCHTFRHSFATHLLQNGCDIRTVQELLGHTDVKTTQIYTRV 162 >gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] Length = 299 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 244 HMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYP 296 >gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816] gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220] gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161] gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818] gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f] gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f] Length = 465 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 5/60 (8%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-----KRMMEIYDQTHP 58 + H LRHSFA HLL G D+R +Q +LGH+ +STTQIYT N+ + E+Y +HP Sbjct: 352 SPHVLRHSFAAHLLDRGADVRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSSHP 411 >gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118] gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118] Length = 337 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+HLL + DLR++Q +LGH+ ++TTQ YT ++ + + + YD HP Sbjct: 275 HMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTRLDFQHLAKAYDAAHP 327 >gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e] gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland 1988] gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL R2-561] gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S] gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL F2-515] gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e] gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] Length = 241 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 187 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 239 >gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 309 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT++ ++++ + + HP Sbjct: 251 SPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANEKLKNVLLKFHP 305 >gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] Length = 128 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 74 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKHHP 126 >gi|89147470|gb|ABD62595.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/41 (73%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R+IQ +LGH+ LSTT IYT+V Sbjct: 122 TPHTLRHSFATHLLQNGTDIRTIQELLGHNDLSTTMIYTHV 162 >gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262] gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262] Length = 300 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHP 298 >gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 311 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS ATH++ +G DLRS+Q+ LGH+ ++TTQ+YT+V + E++ HP ++ Sbjct: 247 SPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGHLKEVHRLHHPRAKRR 306 >gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens] Length = 320 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 343 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS+ATHLL+ G D+ +++ +LGH LS+TQ+YT + + ++++Y+QTHP Sbjct: 288 HALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTTSSFEELIKVYNQTHP 340 >gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20] gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20] Length = 317 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ R+ + HP Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHP 305 >gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida GA99-3549] gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112] gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549] gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis Fe/C-56] gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 312 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + ++++HP Sbjct: 256 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310 >gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] Length = 308 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TAH RH+FAT LL+N DLR++Q +LGHS LSTTQIYT+V + + + Y P ++ Sbjct: 249 VTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRASE 308 >gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] Length = 317 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ R+ + HP Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHP 305 >gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] Length = 299 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHL+ G DLR+IQ +LGH ++TT+IYT+++ + + Q HP Sbjct: 243 SPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLDRDFLKQTITQFHP 297 >gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae FF5] gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. pisi str. 1704B] gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 299 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 237 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 294 >gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG] gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 291 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 229 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 269 >gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP +K Sbjct: 228 HMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAKRK 285 >gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] Length = 322 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS ATHLL G DLR +Q +LGHS L+TTQ YT+V+ +++ Y Q P Sbjct: 266 SPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTHVSMEQLTRKYQQAFP 320 >gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] Length = 299 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + + HP Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREYLKGVIIEHHP 297 >gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] Length = 304 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFA+ ++ G D+R +Q +LGHS ++TTQ YT++ + ++ ++Y + HP Sbjct: 248 TPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITAAQLQDLYHKAHP 302 >gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 299 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS A H++ G DLR +Q ILGH+ L+TT++YT V+ + +Y + HP Sbjct: 238 SPHVLRHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGHVDAVYQRAHP 292 >gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 44/58 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP +K Sbjct: 235 HMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKKK 292 >gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] Length = 296 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 38/46 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + + HTLRH+FATHLL G +LR+IQ +LGH+ LSTTQ+YTN++ + Sbjct: 236 NISPHTLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRR 281 >gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39] gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39] Length = 294 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+ IY Q HP Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSIERLKSIYKQAHP 292 >gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium] Length = 163 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 36/42 (85%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ +LGH+ +STTQIYT+V Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVSTTQIYTHV 162 >gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 298 Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHL+ G DLR++Q +LGH +STT+IYT+++ + + + HP Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLDRDYLRSVMIEFHP 296 >gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] Length = 316 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + + HP Sbjct: 260 SPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHP 314 >gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2] gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2] Length = 297 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 238 TPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278 >gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118] Length = 302 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG D+RS+Q +LGHS LS TQIYT+V + + Y++ P Sbjct: 245 HELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAHLKSDYEKYFP 297 >gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01] Length = 302 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 245 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 297 >gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4] gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4] Length = 283 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 29/49 (59%), Positives = 36/49 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRHSFATH+L G D+R+IQ +LGHS LSTTQIYT V + + Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 267 >gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] Length = 295 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 46/64 (71%), Gaps = 1/64 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T+ H LRHSFATHLL G DL +++ +LGH+ L++TQ+YT+ + + + E++ HP Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTHSSMEMLKEMHRNAHPR- 291 Query: 61 TQKD 64 ++KD Sbjct: 292 SKKD 295 >gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] Length = 302 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 245 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 297 >gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] Length = 299 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG DL +++ +LGHS L+TT IYT+V + +++ Y HP Sbjct: 243 SPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHP 297 >gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] Length = 291 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+ I D+ H Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHH 288 >gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688] gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688] Length = 298 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 41/51 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + ++YD T Sbjct: 235 HMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDST 285 >gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 294 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL G DLR++Q +LGH+ ++TT+ Y + + + + +IYD+THP Sbjct: 241 HILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDLE-LRDIYDKTHP 292 >gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1] gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1] Length = 296 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G DL +++ +LGH+ L+ TQ+YT+ + + ++Y ++HP Sbjct: 237 CSPHVLRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTHNSIAELKKVYAKSHP 292 >gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CPHL_A] gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A] Length = 311 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 254 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHP 308 >gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 307 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL+N D+R +Q +LGHS +STTQ+YT+V+ + EIY + HP Sbjct: 248 TPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHP 302 >gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Rv] gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis AF2122/97] gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis F11] gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 02_1987] gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T92] gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis GM 1503] gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T17] gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis K85] gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17] gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85] gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92] gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 210] gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN 4207] gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN R506] gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001] gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003] gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005] gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006] gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008] gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007] gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009] gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010] gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011] gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN V2475] gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv] gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97] gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11] gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85] gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17] gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92] gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011] gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148] gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 311 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 254 SPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHP 308 >gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US] gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 270 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 213 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 265 >gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 297 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 37/41 (90%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S Sbjct: 234 HTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 274 >gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 297 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG +LR+IQ +LGH + TT+IYT+++ + ++ + HP Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHIDHSYLSQVINTYHP 295 >gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN] gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN] Length = 270 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 213 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 265 >gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 302 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 245 HELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHVTMAHLKSDYEKYFP 297 >gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 344 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 42/64 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ K + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREA 335 Query: 64 DKKN 67 D ++ Sbjct: 336 DSEH 339 >gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366] gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366] Length = 294 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+ IY Q HP Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHP 292 >gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] Length = 270 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 213 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 265 >gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] Length = 408 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 37/50 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL G D+R++Q +LGH+ L TT IYT+V K M+ + Sbjct: 353 ASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAKKNMLGV 402 >gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 41/63 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ Sbjct: 277 ACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMA 336 Query: 64 DKK 66 D+K Sbjct: 337 DEK 339 >gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii] Length = 320 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGH+ +STTQIYT+V Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305 >gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 41/63 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ Sbjct: 277 ACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMA 336 Query: 64 DKK 66 D+K Sbjct: 337 DEK 339 >gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756] gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756] Length = 317 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS A+HLL + GDLR++Q LGH+ ++TT IYT+++ + + +YD HP Sbjct: 250 HTLRHSAASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQHLAAVYDSAHP 302 >gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 41/63 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ Sbjct: 277 ACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMA 336 Query: 64 DKK 66 D+K Sbjct: 337 DEK 339 >gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss] gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum MopnTet14] gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum Nigg] Length = 315 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+ HP Sbjct: 254 TITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDEAHP 310 >gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium] Length = 163 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL NG D+R++Q +LGH +STTQIYT+V Sbjct: 120 PATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQIYTHV 162 >gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] Length = 302 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 245 HELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 297 >gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 313 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT + + E++ HP Sbjct: 255 SPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNTLREVHATAHP 309 >gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10] Length = 302 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 245 HELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 297 >gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14] gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14] Length = 320 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGH+ +STTQIYT+V Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305 >gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 425 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 38/46 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S T HTLRHSFATH+L +G D+R++Q I+GH+ ++TTQIYT+V K Sbjct: 358 SATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHVMGK 403 >gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse] gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse] Length = 315 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V + + ++ HP Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEAGLYRLVNEHHP 304 >gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571] gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571] Length = 242 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 29/54 (53%), Positives = 38/54 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 184 PHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 237 >gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273] gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273] Length = 306 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 250 SPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHIDRTFVKEVHRTCHP 304 >gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] Length = 310 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 37/41 (90%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S Sbjct: 247 HTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDS 287 >gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1] gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1] Length = 112 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/53 (56%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 55 HELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFP 107 >gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] Length = 297 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFA+HL+ G DLR++Q +LGH ++TT+IYT+++ + I Q HP Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAIITQFHP 295 >gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 301 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + ++ HP Sbjct: 245 SPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLRQVLTDFHP 299 >gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] Length = 283 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 29/49 (59%), Positives = 36/49 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRHSFATH+L G D+R+IQ +LGHS LSTTQIYT V + + Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHL 267 >gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] Length = 316 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ R+ + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNRLRSEIIEHHP 304 >gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] Length = 338 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M T H RHSFAT LL D+R IQ +LGHS ++TTQIYT+V S + EI HP Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHP 331 >gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 306 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQIYT++N + + +Y + +K Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 303 Query: 64 DK 65 K Sbjct: 304 SK 305 >gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium] gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium] Length = 167 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 124 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166 >gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 338 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/58 (53%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M T H RHSFAT LL D+R IQ +LGHS ++TTQIYT+V S + EI HP Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHP 331 >gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99] Length = 300 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT LL+NG D+R++Q +LGH+ L++TQIYT+V + + Y + HP Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEHLKSTYMKHHP 298 >gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 309 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQIYT++N + + +Y + +K Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 306 Query: 64 DK 65 K Sbjct: 307 SK 308 >gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] Length = 301 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 45/60 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++ ++ + + HP ++K Sbjct: 240 SPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQNKLHKEIEAKHPLSSKK 299 >gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] Length = 294 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFA HLL D+R++Q +LGH+ LS+TQIYT ++ + +YD+THP + Sbjct: 233 SPHMLRHSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDFDHLAAVYDETHPRARRG 292 Query: 64 DK 65 K Sbjct: 293 KK 294 >gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] Length = 315 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKKN 67 + DK++ Sbjct: 302 RYDKEH 307 >gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] Length = 296 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L G ++ ++ ++GH L++TQ+YT N +++ ++++ HP QK Sbjct: 234 SPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNIEQLKKVFNNAHPRAIQK 293 Query: 64 D 64 + Sbjct: 294 E 294 >gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)] Length = 282 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FAT L++G D+R IQ +LGHS LS+TQIYT+V+ +R+ + D+ + S+ Sbjct: 220 VTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVDPQRLKQKTDEFYRSL 277 >gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ + + Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKGRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96] gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 356 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] Length = 315 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKK 66 + DK+ Sbjct: 302 RYDKE 306 >gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism] Length = 319 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 29/41 (70%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R+IQ +LGHS +STT IYT+V Sbjct: 279 TCHTLRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319 >gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] Length = 335 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH FATHLL +G D+R++Q +LGH ++TTQIYT+V Sbjct: 281 TPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTHV 321 >gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 306 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT+L+ G D+ +Q ILGHS + TTQIY +V +K+ EI ++HP Sbjct: 241 TPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQAEILRESHP 295 >gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium] gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH ++TT IYT+V Sbjct: 121 ATCHTLRHSFATHLLENGYDIRTVQELLGHKEVATTMIYTHV 162 >gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] Length = 278 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQIYT++N + + +Y + +K Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 275 Query: 64 DK 65 K Sbjct: 276 SK 277 >gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28] Length = 450 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/48 (58%), Positives = 40/48 (83%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V +KR ++Y Sbjct: 246 HMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHV-TKRAFKVY 292 >gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] Length = 320 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 AVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 352 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 38/54 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++++THP+ Sbjct: 269 HVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322 >gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] Length = 330 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G DL++IQ +LGH + TT+IYT++++ + E + HP Sbjct: 271 SPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDTDYLRETILRFHP 325 >gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200] Length = 324 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 39/56 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RH+ AT +L NG +LR +Q +LGH+ + TTQIYT+V+ ++ E+Y THPS Sbjct: 255 ACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVSRAKLTEVYGSTHPS 310 >gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH+ L TT IYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162 >gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 305 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H +RH++AT LL G DLR +Q +LGH LSTTQ+YT+++ R+ E HP Sbjct: 246 SLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHP 302 >gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] Length = 293 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+N L S++ +LGH LSTT+IYT+ +++ +IYD+ HP Sbjct: 237 SPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQLRKIYDKAHP 291 >gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68] Length = 202 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+ + +EI + +P Sbjct: 132 TPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 186 >gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 307 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + + Y + HP Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHP 297 >gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185] gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304 >gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185] gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304 >gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 328 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHSFATHLL++G ++ IQ +LGH+ LSTTQIYT++ ++++ + +HP ITQ Sbjct: 267 SPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 324 >gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] Length = 291 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+ I D+ H Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHH 288 >gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 352 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHS AT +L G DLR +Q +LGH+ ++TTQIYT+V ++R+ Y Q HP Sbjct: 294 SPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYTHVGAERLKAAYRQAHP 348 >gi|83722819|gb|ABC41681.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 29/41 (70%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATHLL G DLR+IQ +LGH ++TTQIYT+V Sbjct: 122 SAHTLRHSFATHLLEAGHDLRTIQELLGHKDIATTQIYTHV 162 >gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489] gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489] Length = 410 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL NG D+R+IQ +LGHS +STT IYT+V Sbjct: 353 NASCHTFRHSFATHLLENGYDIRTIQELLGHSDVSTTMIYTHV 395 >gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 307 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + + Y + HP Sbjct: 243 SPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHP 297 >gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195] gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195] gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678] Length = 319 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304 >gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium] Length = 163 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens] Length = 317 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHV 304 >gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM 22836] Length = 295 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG D+ +++ +LGH+ L+ T+IYT+ + + + IY++ HP Sbjct: 238 VSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEELKRIYNKAHP 293 >gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 309 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATHLL++G D+R++Q +LGHS LS+TQIYT+++ + + Y + P D Sbjct: 244 HKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPRAKHSD 302 >gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] Length = 292 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RHSFA+H+L+NG D++S+Q +LGH ++TTQIY ++ E Y + +P Sbjct: 236 TPHMIRHSFASHMLNNGADIKSVQEMLGHVDIATTQIYLTNKQSKLKEEYAKAYP 290 >gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)] Length = 290 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVKTTQIYTHV 282 >gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] Length = 305 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + HP Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLDRDYLQQTLKEYHP 296 >gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 328 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHSFATHLL++G ++ IQ +LGH+ LSTTQIYT++ ++++ + +HP ITQ Sbjct: 267 SPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 324 >gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126] gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126] Length = 299 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + HP Sbjct: 241 NVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLSQTLKEFHP 297 >gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221] gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221] Length = 443 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+HTLRHSFATHLL +G D+R++Q +LGH ++ TTQ+Y +V K Sbjct: 388 TSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQVYLHVMQK 431 >gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH] gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH] Length = 275 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H LRHSFAT L+ G DLR +Q +LGHS L+TTQIYT++ + + + + HP Sbjct: 212 LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVIKYHP 269 >gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 428 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/50 (60%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH+FATHLL G DLR IQ++LGHS + TTQIYT V R+ I Sbjct: 363 VTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLENI 412 >gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 415 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH+L +G D+R +Q +LGHS +STTQIYT+V Sbjct: 360 TVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHV 400 >gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 265 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 38/52 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHSFATHLL +G DLR IQ +LGH+ TT IYT+V+SK + I Sbjct: 207 IGVTLHTLRHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKSLQNI 258 >gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL NG +LR+IQ +LGH+ ++TT+IYT+V + + HP Sbjct: 247 TVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHVGISHLRQEIMNFHP 303 >gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896] Length = 307 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H RH+FAT LL N D R+IQ ILGHS ++TTQIYTN+ S + +EI +P + Sbjct: 241 INITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKIEIMKYKNPRL 300 >gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] Length = 320 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 NVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 329 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/39 (69%), Positives = 31/39 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRH+FATH L NG +LR +Q ILGHS +STTQIYT Sbjct: 273 TPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYT 311 >gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 302 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 38/54 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FAT +++NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 244 PHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFP 297 >gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] Length = 297 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFA+HL+ G DLR++Q +LGH ++TT+IYT+++ + + Q HP Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAVITQYHP 295 >gi|89147410|gb|ABD62565.1| integrase [uncultured bacterium] Length = 167 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH ++TT IYT+V Sbjct: 125 ATCHTLRHSFATHLLENGYDIRTVQELLGHREVATTMIYTHV 166 >gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium] Length = 163 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] Length = 305 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++ ++ + + HP Sbjct: 240 SPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHP 294 >gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] Length = 320 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 305 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 40/60 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++ + HP +K Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEASRLVRAHHPLAAKK 304 >gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3] gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3] Length = 298 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+ + +EI + +P Sbjct: 234 TPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 288 >gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein [Leuconostoc fallax KCTC 3537] Length = 308 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FATHLL++G D+R++Q +LGH LSTTQ+YT+V + + + Y P D Sbjct: 246 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHVTRESLQKNYQNFFPRAKLND 304 >gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722] Length = 320 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147683|gb|ABD62700.1| integrase [uncultured bacterium] Length = 161 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATH+L NG D+R++Q +LGH +STTQIYT+V Sbjct: 118 PVTPHTFRHSFATHVLENGYDIRTVQDLLGHKDVSTTQIYTHV 160 >gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus] Length = 320 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23] gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23] Length = 292 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG L +I+S+LGH+ +STT+IYT+ +++ IY + HP Sbjct: 236 SPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQLKRIYKEAHP 290 >gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01] gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01] Length = 320 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591] gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591] Length = 175 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+ + +EI + +P Sbjct: 105 TPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 159 >gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 191 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 45/59 (76%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHSFATHLL++G ++ IQ +LGH+ LSTTQIYT++ ++++ + +HP ITQ Sbjct: 130 SPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 187 >gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 297 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q +LGHS + TT++YT+ + + + ++YD++HP Sbjct: 241 HILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHP 292 >gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 38/54 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++++THP+ Sbjct: 269 HVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322 >gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 293 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+N L S++ +LGH LSTT+IYT+ +++ IYD+ HP Sbjct: 237 SPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQLRRIYDKAHP 291 >gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] Length = 308 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++ + HP Sbjct: 245 SPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHP 299 >gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium] Length = 307 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 267 TPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 307 >gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] Length = 303 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ R+ + + HP Sbjct: 241 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLDRSRLRQEILEHHP 297 >gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 321 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS L TTQIYT++ Sbjct: 264 TVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLRTTQIYTHI 306 >gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 312 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+ G D+R +Q +LGHS + TTQIY V + E + +HP Sbjct: 256 SPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKVTPDLLRESWALSHP 310 >gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT] gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT] Length = 334 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V Sbjct: 277 TPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 317 >gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 316 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 37/54 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T HT+RH+FA H L G D R +Q+ LGHS L+TTQ YT V + + E Y++TH Sbjct: 257 TPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDRYLRESYERTH 310 >gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] Length = 317 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 42/66 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT+++ + E HP Sbjct: 245 TISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHIDISTLREEILNHHPRNI 304 Query: 62 QKDKKN 67 ++KN Sbjct: 305 MYNEKN 310 >gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)] Length = 297 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 38/57 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V + I +P Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRWCSSIIKPIYP 296 >gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 293 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT LL+ G D+ +I+ +LGH+ L+ TQ+YT+ + +R+ IY Q HP Sbjct: 237 SPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTHNSIERIKTIYKQAHP 291 >gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 292 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L+NG L ++Q +LGH L TT+IYT+ +++ ++Y++ HP Sbjct: 236 TPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQLKKVYEKAHP 290 >gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132] gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132] Length = 296 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFATHL+ G DLR++Q +LGH + TT+IYT+++ + + + HP Sbjct: 238 TISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRAFLQQTLREFHP 294 >gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium] Length = 314 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 274 TPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314 >gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39] gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39] Length = 292 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 39/54 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + HT RHSFATHL+ G DLR++Q +LGHS ++TT+IYT+++ + E+ H Sbjct: 236 SPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRNYLKEVVTTFH 289 >gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/42 (69%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HTLRHSFATHLL +G DLR+IQ +LGHS + TT IYT+V Sbjct: 121 VTSHTLRHSFATHLLESGTDLRTIQELLGHSDIKTTMIYTHV 162 >gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 313 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H +RH+FAT L+ G DL+S+Q +LGH LSTTQIYT+++ + + Q HP Sbjct: 255 SYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAVHQAHP 311 >gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 325 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHS AT +L G DLR +Q +LGH+ + TTQIYT+V ++R+ +++Q HP Sbjct: 248 SPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQAHP 302 >gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] Length = 320 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 351 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 295 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 349 >gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7] gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7] Length = 323 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 36/41 (87%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HTLRHSFATHLL +G D+R++Q +LGHS + TTQIYT+V Sbjct: 268 SSHTLRHSFATHLLEDGYDIRTVQELLGHSDVRTTQIYTHV 308 >gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+FA+HLL G DLR+IQ +LGH +STTQIYT++ ++ ++ HP + +K Sbjct: 256 SPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHLLPDKLQKLVQDYHP-LAKK 314 Query: 64 DKK 66 KK Sbjct: 315 LKK 317 >gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] Length = 299 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHL+ G DLR++Q++LGH ++TT+IYT+++ + + + HP Sbjct: 243 SPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLDRSYLQQTIHEFHP 297 >gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] Length = 580 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 39/63 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T HTLRHSFATHLL NG D+R IQ LGHS + TT +YT++ + +I I K Sbjct: 514 TVHTLRHSFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLTKTAVDKIQSPLDRMIDLK 573 Query: 64 DKK 66 KK Sbjct: 574 SKK 576 >gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum] Length = 320 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer RA-YM] Length = 293 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L NG ++ ++ ILGH+ L++TQ+YT+ + ++ ++ + HP Sbjct: 235 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHP 289 >gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868] Length = 291 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L NG ++ ++ ILGH+ L++TQ+YT+ + ++ ++ + HP Sbjct: 233 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHP 287 >gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SI 60 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++Y ++++ + E Q HP ++ Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTTLREEILQHHPRNM 302 Query: 61 TQKD 64 +KD Sbjct: 303 KEKD 306 >gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 298 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL NG +LR IQ +LGH ++TT+IY +++ + + + HP Sbjct: 242 SPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTHLKSVLENYHP 296 >gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium] Length = 163 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/40 (70%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL G D+R IQ +LGH+ +STTQIYT+V Sbjct: 123 PHTLRHSFATHLLERGRDIREIQELLGHANVSTTQIYTHV 162 >gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] Length = 320 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25] Length = 291 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RH+FATHLL +G DLR IQ +LGH+ +++T YT+V+ R+ + + HP Sbjct: 233 SISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHP 289 >gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 301 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHP 295 >gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 345 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335 Query: 64 DK 65 D+ Sbjct: 336 DE 337 >gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] Length = 352 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 37/50 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ Sbjct: 146 HGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHER 195 >gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1] gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1] Length = 295 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 41/58 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FATHLL+ G DL +++ +LGH+ L++TQ+YT+ + + +Y + HP Sbjct: 234 VKKSPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTHNSLAELKNVYAKAHP 291 >gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDNGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773] Length = 302 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 39/53 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL++G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 245 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFP 297 >gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2] Length = 322 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHV 305 >gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] Length = 320 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 264 VTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHV 305 >gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 319 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 40/61 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH FATH+L G ++++Q +LGH L TTQ Y ++ +R+ YD + ++++ Sbjct: 257 SPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVNDDLSER 316 Query: 64 D 64 D Sbjct: 317 D 317 >gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri] Length = 327 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFAT +L GGDLR+IQ +LGHS + TTQIYT+V Sbjct: 271 ASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11] gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11] Length = 327 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFAT +L GGDLR+IQ +LGHS + TTQIYT+V Sbjct: 271 ASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] Length = 312 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ R+ + HP Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDKNRLRQEIIGHHP 298 >gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51] gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51] Length = 320 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] Length = 292 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RH AT LL +G DLRSIQ +LGH+ + TTQIYTNV + M + ++ HP Sbjct: 231 HRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTTNTMTKTIEEHHP 283 >gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] Length = 310 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 40/53 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS ATHL+ G D+R +Q +LGH+ ++TTQIYT+++ + ++E Y HP Sbjct: 255 HTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISPQTLIESYMGAHP 307 >gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511] gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511] Length = 284 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL +G + + +LGH+ ++TTQIYT + S R + Y + HP Sbjct: 212 IKATPHQLRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSRKLREYMKAHP 269 >gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116] Length = 318 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/44 (63%), Positives = 34/44 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT V+ Sbjct: 263 SVTCHTLRHSFATHLLETGADIRTVQEQLGHTDVKTTQIYTAVH 306 >gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] Length = 298 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHL+ G LR++Q +LGH ++TT+IYT+++ + +I + HP Sbjct: 240 NVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLDRDYLRQIITEFHP 296 >gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans] Length = 339 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 277 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317 >gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] Length = 313 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +L++I+ +LGH +STT+IYT+++S+ + E + HP Sbjct: 252 TVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQTLREEILRHHP 308 >gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 AASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114] gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114] Length = 327 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFAT +L GGDLR+IQ +LGHS + TTQIYT+V Sbjct: 271 ASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 36/54 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ Sbjct: 269 HIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPA 322 >gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 370 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 41/61 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D+ Sbjct: 279 HLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMADE 338 Query: 66 K 66 K Sbjct: 339 K 339 >gi|255012874|ref|ZP_05285000.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 69 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 7 NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHP 63 >gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium] Length = 330 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 290 TPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330 >gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ + Sbjct: 269 HIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRTE 328 Query: 66 K 66 K Sbjct: 329 K 329 >gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium adolescentis ATCC 15703] gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 273 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFP 327 >gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335 Query: 64 DK 65 D+ Sbjct: 336 DE 337 >gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] Length = 314 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ R+ + HP Sbjct: 242 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNRLRQEIIGHHP 298 >gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 299 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 41/53 (77%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLR++Q +LGH+ +STT+ YT+++ + + +IYD+ HP Sbjct: 246 HVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE-LRDIYDKCHP 297 >gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 AASCHTFRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937] gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937] Length = 339 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 277 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317 >gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFA+HL+S G DLR++Q +LGH + TT+IYT+++ + + ++ HP Sbjct: 241 NVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDDHYLKDTINKFHP 297 >gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] Length = 376 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 41/61 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D+ Sbjct: 279 HLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMADE 338 Query: 66 K 66 K Sbjct: 339 K 339 >gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125] gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V Sbjct: 252 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHV 293 >gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 300 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFAT LL G D+ +IQ ++GH+ L++T+IY + +SKR+ E ++ P I Sbjct: 241 TPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIRPGI 297 >gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 333 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 42/53 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RHSFA+H+L + DLR++Q +LGH+ +++TQIYT+++ + + + YD+ HP Sbjct: 274 HMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDFQHLAQAYDKAHP 326 >gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida] Length = 320 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHV 305 >gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium] Length = 163 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 VTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKK 66 Q +++ Sbjct: 302 QYNER 306 >gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304 >gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 285 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH+FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 223 TCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHV 263 >gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86] gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 38/50 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHS+ATHLL +G DLR IQ +LGHS TT+IYT+V++K + +I Sbjct: 291 VSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKNLQQI 340 >gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7] gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7] Length = 319 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304 >gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319] gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319] Length = 314 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTTTLRQEILEHHPRNI 301 Query: 62 QKDKK 66 + D++ Sbjct: 302 KYDEE 306 >gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes] Length = 321 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ + TTQIYT+V Sbjct: 266 TPHTLRHSFATHLLESGQDIRTVQELLGHADVKTTQIYTHV 306 >gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 319 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304 >gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1] gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1] Length = 277 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H LRHS+AT L+S G DLR +Q +LGH+ L TTQIYT++ + + E + HP Sbjct: 218 LNVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQDLKETVEVCHP 275 >gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] Length = 320 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVRTTQIYTHV 305 >gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHV 304 >gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] Length = 318 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 253 TISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHP 309 >gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25] gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25] Length = 335 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 278 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 320 >gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/42 (69%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+RSIQ +LGH+ L TT IYT+V Sbjct: 121 VTTHTLRHSFATHLLEAGYDIRSIQELLGHADLKTTMIYTHV 162 >gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 145 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/48 (54%), Positives = 37/48 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+FAT LL G DLR++Q +LGH LSTTQ+Y + +S+R+++ Sbjct: 89 TLHKLRHTFATRLLERGADLRTLQELLGHENLSTTQVYVHASSERLLQ 136 >gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010] Length = 334 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 278 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 332 >gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 334 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 278 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 332 >gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238] gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAK 290 >gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium] Length = 166 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 124 ASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 165 >gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str. B100] gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 327 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH+FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 267 TCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 307 >gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25] gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25] Length = 320 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707] Length = 310 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 37/49 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT LL +G +L IQ++LGH LSTTQIYT+V+ +RM I Sbjct: 258 TPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGI 306 >gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] Length = 312 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT V+ K ++ +HP Sbjct: 255 TPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIKLKKHTHETSHP 309 >gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591] gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591] Length = 369 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 39/56 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + + ++ THP+ Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 332 >gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] Length = 334 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 278 SPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFP 332 >gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRHSFA HL+ +G DL+S+Q ILGHS +STTQ+Y ++N Sbjct: 240 TPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMN 281 >gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGHS L+TT IYT+V Sbjct: 121 ATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMIYTHV 162 >gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238] gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAK 290 >gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 280 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL++G + + +LGH ++TTQ+YT + S + M+ Y HP Sbjct: 217 LKVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKLGSVKKMQEYMSAHP 274 >gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHLL NG D+R++Q +LGHS +STT IYT+V Sbjct: 121 ASCHSLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 301 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/55 (54%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL D+R IQ ILGHS ++TTQIYT+V+ + EI HP Sbjct: 241 TPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVSMAKQKEILSVKHP 295 >gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238] gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAK 290 >gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1] gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1] Length = 462 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V SK Sbjct: 407 SCHTLRHSFATHLLERGQDIRTVQELLGHADVSTTMIYTHVMSK 450 >gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] Length = 301 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHL+ G +LR+IQ +LGH ++TT+IYT+++ + + E HP T Sbjct: 242 SPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQRFLREAILSYHPRNT 299 >gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] Length = 317 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 SISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083] gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083] Length = 295 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K Sbjct: 225 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATK 270 >gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri] Length = 320 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 266 TPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHV 306 >gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] Length = 305 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ + + + HP Sbjct: 246 NVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLDKSLIRQEILEYHP 302 >gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221] gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221] Length = 448 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+H LRHSFATH+L NG D+R++Q +LGH R+ TTQ Y +V K Sbjct: 390 TSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQK 433 >gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B] gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B] Length = 320 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 314 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHL +NG DL +++ +LGH+ L++TQ+YT+ + +++ + Y + HP Sbjct: 257 SPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTHNSIEKLKDAYRKAHP 311 >gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 302 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH ATH+L G DLR++Q +LGH+ L+TTQ YT+V++ R+ I Q HP Sbjct: 246 SPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHP 300 >gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM 1251] Length = 278 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHS+AT L++ G DLR +Q +LGHS L TTQIYT++ + + E + HP Sbjct: 212 LGVSPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQDLKETLEVCHP 269 >gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810] gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034] gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466] gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030] gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037] gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810] gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466] gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034] gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037] gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030] Length = 341 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 284 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 326 >gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/47 (61%), Positives = 36/47 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL NG DLR IQ +LGH+ STT+ YT+V++K + I Sbjct: 320 HVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKNLKRI 366 >gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329] Length = 320 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1] gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1] Length = 330 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/44 (65%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V +K Sbjct: 274 TPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNK 317 >gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162 >gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD 2210633] gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD 2210633] Length = 320 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107] gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107] Length = 323 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 36/42 (85%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATHLL++G D+R++Q LGH+ + TTQIYT+V Sbjct: 265 VSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHV 306 >gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061] gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 333 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 37/54 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RH AT +L NG D R IQ+ILGH+ L +TQIYT V + E+++QTHP+ Sbjct: 253 HLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVAIGHLKEVHNQTHPA 306 >gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium] Length = 163 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162 >gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus] Length = 320 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18] gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18] Length = 314 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHP 298 >gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238] gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/46 (65%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K Sbjct: 245 PVTLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATK 290 >gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 41/61 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D+ Sbjct: 279 HLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMADE 338 Query: 66 K 66 K Sbjct: 339 K 339 >gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATHL+ +G D+R++Q +LGH ++TTQIYT+V Sbjct: 120 PVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQIYTHV 162 >gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 295 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSKQKEILTSCNP 289 >gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS-ITQ 62 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ T+ Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335 Query: 63 KDK 65 DK Sbjct: 336 PDK 338 >gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLQRGQDIRTVQELLGHSDVSTTMIYTHV 162 >gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 346 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ Q+ Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQQE 335 >gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 VTPHVLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 297 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/52 (55%), Positives = 38/52 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 M T HTLRHSFATHLL G +LR IQ +LGH+ TT+IYT+V++ ++ I Sbjct: 237 MPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSSKTTEIYTHVSTTNLINI 288 >gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162 >gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113] gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT LL +G +L IQ++LGH LSTTQIYT+V+ +RM Sbjct: 258 TPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERM 303 >gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] Length = 310 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT LL +G +L IQ++LGH LSTTQIYT+V+ +RM Sbjct: 258 TPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERM 303 >gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] Length = 295 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG D+ ++Q+++GHS ++TTQ+Y N + + Y HP Sbjct: 238 TPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYTRGEAVRSAYAGAHP 293 >gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A] gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum DJO10A] gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A] gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 301 HALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 353 >gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901] gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901] Length = 322 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + +AHTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT+V Sbjct: 264 TVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHV 306 >gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT LL+NG + +I+ +LGH+ L+ TQIYT+ + + + ++Y+Q HP Sbjct: 251 SPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTHNSFESLKKVYNQAHP 305 >gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 307 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302 Query: 62 QKD 64 +K+ Sbjct: 303 RKN 305 >gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] Length = 290 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHLL+NG DLR++Q +LGH LSTT YT++ + Y HP Sbjct: 236 HKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHITKAHLRNSYLSAHP 288 >gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 309 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ ILGHS ++TTQIYT+++S + EI Q +P Sbjct: 248 TPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQKNP 302 >gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 295 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 T HTLRHSFA HLL NG D+ ++Q++LGHS ++TTQ+Y N + + Y HP Sbjct: 238 TPHTLRHSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQGEDLRRSYTGAHP 293 >gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 322 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + Y Q P Sbjct: 266 SPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFP 320 >gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 307 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302 Query: 62 QKD 64 +K+ Sbjct: 303 RKN 305 >gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 252 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFP 306 >gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] Length = 322 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + Y Q P Sbjct: 266 SPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFP 320 >gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium] Length = 161 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R+IQ +LGH +STT IYT+V Sbjct: 119 NASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161 >gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 322 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + Y Q P Sbjct: 266 SPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFP 320 >gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703] gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703] Length = 366 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 39/56 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + + ++ THP+ Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 332 >gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli] gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae] gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli] Length = 346 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 284 SVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324 >gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens] gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens] gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens] Length = 346 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 284 SVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324 >gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640] gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 291 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 42/54 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++ + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHH 288 >gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis] Length = 324 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT++ Sbjct: 266 SCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTTQIYTHI 306 >gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri] Length = 320 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 266 TPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHV 306 >gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1] gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1] Length = 321 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q LGH+ L TTQ+YT+V Sbjct: 264 VSCHTLRHSFATHLLESGADIRTVQEQLGHTDLKTTQVYTHV 305 >gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886] gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886] Length = 320 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQ+YT++ Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQAQLGHSDVRTTQVYTHI 305 >gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] Length = 303 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT+L+ G D+ +Q ILGHS + TTQIY +V+S++ +I + HP Sbjct: 240 TPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADILREMHP 294 >gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium] Length = 164 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 122 VTTHTLRHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163 >gi|89147640|gb|ABD62679.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 121 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162 >gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] Length = 310 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHP 298 >gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] Length = 307 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDTTTLREEILNHHP 299 >gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis] gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans] Length = 346 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 284 SVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324 >gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4] gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4] Length = 293 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT LL+ G D+ +++ +LGHS LS TQ+YT+ + + + IY HP Sbjct: 236 SPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHTSFEELYNIYKHAHP 290 >gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium] gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium] gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium] Length = 163 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 SGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium] Length = 164 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH LRHS+ATHLL G DLR+IQ LGHS + TT+IYT+V Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163 >gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 286 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/47 (57%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFA HLL + D+R IQ++LGHS+L TT +Y V SK + E+ Sbjct: 231 HTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYAQVASKLLQEV 277 >gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 297 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 38/56 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATH L G DLR +Q +LGH+ +STTQIYT+V+ + + + HP Sbjct: 236 VSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHP 291 >gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] Length = 317 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ + + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHP 304 >gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586] gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586] Length = 320 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450] gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450] Length = 321 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+RS+Q +LGH+ + TTQIYT+V Sbjct: 264 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHV 305 >gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 317 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ + + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHP 304 >gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] Length = 316 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 262 HALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLAARYRQAFP 314 >gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VTVHTLRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 316 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ++LGH + TT+IYT+++ + + + HP Sbjct: 252 TISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHIDRSMLRQEIIEHHP 308 >gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 344 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 38/56 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPA 331 >gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2] gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2] Length = 326 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/41 (68%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFATHLL G D+R+IQ++LGHS LSTT IYT+V Sbjct: 269 SSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYTHV 309 >gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37] gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37] Length = 324 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q LGH+ L TTQIYT+V Sbjct: 264 VTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYTHV 305 >gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01] gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01] Length = 308 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYD 54 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT +VN K + + D Sbjct: 251 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTAAHHVNHKNVPSLVD 306 >gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341] gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341] Length = 320 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 290 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH++ATHLL+ G DL +I+ +LGH+ L+ TQIYT+ + +++ + + Q HP Sbjct: 234 SPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTHNSIEKLKKTHQQAHP 288 >gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614] gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614] gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614] gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614] gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614] gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 29/44 (65%), Positives = 35/44 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T YT V+S+ Sbjct: 224 TVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSSR 267 >gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKKN 67 RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ K + ++ THP+ + D ++ Sbjct: 280 FRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREADSEH 339 >gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80] gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80] Length = 320 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 37/56 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+ EI HP Sbjct: 247 VTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHP 302 >gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39] gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426] gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39] gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426] Length = 320 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium] Length = 164 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH LRHS+ATHLL G DLR+IQ LGHS + TT+IYT+V Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163 >gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ASTHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT+RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 VTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12] gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12] Length = 319 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHP 304 >gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination [Vibrio cholerae MZO-2] gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination [Vibrio cholerae MZO-2] Length = 314 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 257 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 299 >gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHT RHSFATHLL G D+R+IQS+LGH L TT IYT+V Sbjct: 121 VSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMIYTHV 162 >gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52] gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3] gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457] gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33] gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2] gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286] gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33] gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21] gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9] gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236] gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10] gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101] gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1] gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27] gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385] gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757] gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae] gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae] gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52] gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3] gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457] gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33] gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2] gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9] gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21] gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33] gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286] gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236] gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10] gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101] gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27] gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1] gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385] gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757] gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4] gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4] Length = 320 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+NG +L +++ +LGHS L++T+IYT++ + + + Y Q HP Sbjct: 243 SPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHP 297 >gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411] gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411] Length = 283 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/51 (56%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ K + +I Sbjct: 219 TVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 269 >gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 290 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 36/49 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL G D+R IQ +LGH++L TT IYT V K + ++ Sbjct: 227 SPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIYTKVAIKTIRDV 275 >gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 SGSCHTFRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHV 162 >gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 344 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L G D R IQ+ILGH +L TTQIYT V + +++++THP+ Sbjct: 269 HVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322 >gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 164 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 42/54 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++ + H Sbjct: 108 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHH 161 >gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)] Length = 291 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 241 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 283 >gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] Length = 284 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/47 (61%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL NG DLR IQ +LGH TT IYT+V+++ + I Sbjct: 231 HTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRSLQNI 277 >gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium] Length = 163 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 120 PATPHTFRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] Length = 306 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/40 (67%), Positives = 31/40 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LRHSFA+HLL G DLR IQ +LGHS +STTQIYT Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYT 287 >gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] Length = 306 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 250 SPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 304 >gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226] gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226] Length = 320 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)] Length = 296 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 288 >gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)] Length = 293 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|213583107|ref|ZP_03364933.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 48 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 38/46 (82%) Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 1 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 46 >gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)] Length = 293 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium] Length = 161 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/40 (67%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL +G D+R+IQ +LGH +STT IYT+V Sbjct: 122 PHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161 >gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 314 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT RH+FAT LL D++ IQ++LGHS ++TTQIYT+VN + +I HP Sbjct: 252 TPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQKKILSSKHP 306 >gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus] Length = 324 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT++ Sbjct: 266 SCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306 >gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron Recombination Length = 320 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS ATHLL++G ++ IQ ILGH+ LSTTQIYT++ ++++ + +HP ITQ Sbjct: 267 SPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANEKLKDKLADSHP-ITQ 324 >gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae LPCoLN] Length = 312 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K + + + HP Sbjct: 256 TPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHP 310 >gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] Length = 295 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLL G +L +++ +LGHS L+ TQ+YTN + + Y +HP Sbjct: 239 HLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTNNDIAVIKRAYSASHP 291 >gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168] gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168] Length = 398 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL NG D+R++Q +LGHS + TT IYT+V +K Sbjct: 344 CHTFRHSFATHLLENGYDIRTVQELLGHSDVKTTMIYTHVLNK 386 >gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 313 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N Sbjct: 241 TPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHIN 282 >gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 419 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 37/44 (84%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATH+L +G D+R++Q ++GH+ ++TTQIYT+V K Sbjct: 358 TIHTLRHSFATHVLEDGYDIRTLQELMGHNDVNTTQIYTHVMGK 401 >gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 296 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G D+ +I+ +LGHS L++T++YT+ N K + + + HP Sbjct: 236 SPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKELSKAHQAAHP 290 >gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM 16511] gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM 16511] Length = 276 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFAT L+ G DLR +Q +LGHS L TTQIYT++ + + + HP Sbjct: 215 LGVSPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQHLRRTVETYHP 272 >gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)] Length = 293 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223] gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223] Length = 320 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573] gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573] Length = 320 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium] Length = 171 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 129 ASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170 >gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)] Length = 293 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4] gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4] Length = 321 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH + TTQIYT+V Sbjct: 265 SCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTTQIYTHV 305 >gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] Length = 324 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT++ Sbjct: 266 SCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306 >gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae CWL029] gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae J138] gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae AR39] gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae TW-183] gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila pneumoniae AR39] gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138] gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae TW-183] Length = 312 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K + + + HP Sbjct: 256 TPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHP 310 >gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] Length = 334 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ + Y + P Sbjct: 278 SPHALRHSAATHLLDGGADLREVQEMLGHSSLQTTQRYTHVSMEQLTKKYKRAFP 332 >gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170] gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170] Length = 297 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ + + +++ HP Sbjct: 238 SPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHSSAHP 292 >gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] Length = 72 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 41/54 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 16 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 69 >gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603] gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603] Length = 320 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus] Length = 320 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139] gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139] gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 127 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 169 >gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 164 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 34/40 (85%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ Sbjct: 123 HKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLD 162 >gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism] Length = 300 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/39 (69%), Positives = 33/39 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 262 HTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTHV 300 >gi|30908750|gb|AAP37607.1| IntI [uncultured bacterium] Length = 161 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R+IQ +LGH L+TT IYT+V Sbjct: 120 ASCHTLRHSFATHLLQTGSDIRTIQDLLGHKELTTTMIYTHV 161 >gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium] Length = 171 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 129 ASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170 >gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] Length = 316 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304 >gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5] gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5] Length = 313 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 37/50 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +T H LRHSFAT LL+NG ++R +Q ++GH+ + TTQIYT V+ R E+ Sbjct: 251 STPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKKEV 300 >gi|167009963|ref|ZP_02274894.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC200] Length = 75 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 43/58 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DL +++ +LGH+ +S+TQI T++N +++ ++D+ HP +K Sbjct: 18 HILRHSFASHVLDSFKDLLAVKDLLGHADISSTQICTHLNFQQLASVFDKAHPRAKKK 75 >gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 300 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHL++ G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFP 296 >gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 321 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RHSFAT LL NG D+R++Q +LGH+ + TT+IYT+V R Sbjct: 263 VTAHTFRHSFATRLLENGTDIRTVQELLGHTDIRTTEIYTHVVGNR 308 >gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 304 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 37/50 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHS AT L++NG D+R +Q ILGH +STT+IYT+V + + EIY++ Sbjct: 248 HIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHVGKRELKEIYNK 297 >gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] Length = 298 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289 >gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] Length = 315 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ +LGH +STT+IYT++++ + + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDTTTLRREILEHHP 299 >gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 296 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ + + +++ HP Sbjct: 238 SPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHLAAHP 292 >gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218] Length = 329 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 265 SCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium] Length = 161 Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 120 VSCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161 >gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLEAGSDIRTVQELLGHADVSTTMIYTHV 162 >gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 308 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 252 SPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 306 >gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] Length = 308 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 252 SPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 306 >gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii RML369-C] gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C] Length = 305 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/39 (66%), Positives = 31/39 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT Sbjct: 248 SPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYT 286 >gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972] gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972] Length = 329 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 265 SCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] Length = 311 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DL +IQ++LGH +STT+IYT+++ + + + + HP Sbjct: 243 TISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESLRKAIIEHHP 299 >gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238] gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238] Length = 319 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R IQ++LGH++L+TT +Y +V Sbjct: 252 TLHTLRHSFATHLLESGVDIRVIQALLGHAKLTTTALYASV 292 >gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 289 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/51 (56%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ K + +I Sbjct: 228 NVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 278 >gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ] gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ] Length = 453 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 35/48 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T+HT RHSFATHLL G D+R IQ++LGHS L TT IYT+ R ++ Sbjct: 398 TSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTHCVPVRTIQ 445 >gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] Length = 305 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/39 (66%), Positives = 31/39 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT Sbjct: 248 SPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYT 286 >gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6] gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6] Length = 294 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/48 (58%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFA HL+ G DLR +Q LGH+ LSTTQIYT + + E Sbjct: 239 TPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQMPEPLVRE 286 >gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143] gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143] Length = 298 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289 >gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407] gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407] Length = 295 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 35/54 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ R EI +P Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSRQKEILSSYNP 289 >gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] Length = 275 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 40/63 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHS+AT L+ G DLR +Q +LGH+ L TTQIYT++ + + + + HP Sbjct: 212 LGVSPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQDLKDTVEVCHPMA 271 Query: 61 TQK 63 +K Sbjct: 272 KEK 274 >gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A] gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A] Length = 313 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP-SITQ 62 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ + + HP +I Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNIKF 303 Query: 63 KDKKN 67 ++K N Sbjct: 304 REKDN 308 >gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 120 TATCHTFRHSFATHLLKNGHDIRTVQELLGHKDVRTTMIYTHV 162 >gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] Length = 297 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL+ G +L +++ +LGHS L+ TQIYT+ + + I+ + HP Sbjct: 235 VKKSPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTHNSIAELKNIHSKAHP 292 >gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 300 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FATHL++ G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 244 HMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFP 296 >gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT LL G +L IQ++LGH LSTTQIYT+V+ +RM Sbjct: 258 TPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTHVSEERM 303 >gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 196 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 128 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 182 >gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism] Length = 316 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q ++GH +STT IYT+V Sbjct: 276 SCHTLRHSFATHLLESGQDIRTVQELMGHKDVSTTMIYTHV 316 >gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4] gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R+IQ +LGH+ ++TTQIYT+V Sbjct: 264 VTCHTFRHSFATHLLQAGRDIRTIQELLGHNDVNTTQIYTHV 305 >gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH++AT LL+NG + + +LGH+ ++TTQIYT + + ME Y Q+HP Sbjct: 216 LKVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYTKLGNALKMEHYLQSHP 273 >gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23] gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23] Length = 303 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR IQ++LGH + TT+IYT++++ + + + HP Sbjct: 239 TISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDTSTLRQEILEHHP 295 >gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] Length = 376 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 34/44 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++ T H LRHSFATHLL +G D+R IQ +LGHS TT+IYT+V Sbjct: 319 ITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHV 362 >gi|89147432|gb|ABD62576.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581] gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581] Length = 308 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 37/49 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+HLL + DLR++Q +LGH+ LSTTQ+YT ++ + + YD Sbjct: 245 HRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLAAGYD 293 >gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] Length = 319 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] Length = 321 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHP 299 >gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2] gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2] gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2] Length = 319 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4] gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4] gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] Length = 319 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae] Length = 298 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] Length = 316 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304 >gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] Length = 271 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFA+ L+ G DLR +Q +LGHS L TTQIYT++ + + + HP Sbjct: 212 LGVSPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMIHYHP 269 >gi|118591862|ref|ZP_01549257.1| integrase/recombinase [Stappia aggregata IAM 12614] gi|118435505|gb|EAV42151.1| integrase/recombinase [Stappia aggregata IAM 12614] Length = 85 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/45 (57%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL +G D+R IQ +LGHS+L TT +Y V+ + Sbjct: 18 VSPHTLRHSFATHLLEDGTDIRVIQVLLGHSKLETTALYAKVSPR 62 >gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL++G D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLADGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|89147428|gb|ABD62574.1| integrase [uncultured bacterium] Length = 163 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286] Length = 299 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G ++R+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHP 295 >gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1] gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22] gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1] gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A] gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22] Length = 319 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] Length = 316 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304 >gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] Length = 308 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 41/54 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 252 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 305 >gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6] gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6] gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] Length = 319 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] Length = 316 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304 >gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str. McKiel] gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 308 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 248 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 288 >gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 120 AGSCHTLRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|254776174|ref|ZP_05217690.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. avium ATCC 25291] Length = 47 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 THLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 1 THLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 45 >gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] Length = 316 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 250 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 304 >gi|89147464|gb|ABD62592.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 121 VTCHVLRHSFATHLLEDGRDIRTVQELLGHGDVKTTEIYTHV 162 >gi|89147430|gb|ABD62575.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 308 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G DL S++ +LGH+ L++TQ+YT+ + + +++ ++HP Sbjct: 250 SPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTHNSIAELKKVHLKSHP 304 >gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 295 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFAT L+ G D+R IQ +LGHS L+TTQ+Y +V+ +R+ Y++ S+ Sbjct: 229 TPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVSRERLKRDYERVWSSL 285 >gi|89147626|gb|ABD62672.1| integrase [uncultured bacterium] Length = 162 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 119 AATCHTFRHSFATHLLERGQDIRTVQELLGHKDVSTTMIYTHV 161 >gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] Length = 317 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8] gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8] Length = 322 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FAT LL +G D+R++Q ILGHS + TT+IYT+V R Sbjct: 263 VTAHTFRHAFATELLRSGSDIRTVQEILGHSDIRTTEIYTHVIGDR 308 >gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54] gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54] gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae] gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] Length = 298 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] Length = 316 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 251 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHP 305 >gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235] gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235] Length = 422 Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 2/55 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAHT RHSFA+HLL D+R+IQ +LGHS L TT IYT ++ R + I + P Sbjct: 367 TAHTFRHSFASHLLEANYDIRTIQELLGHSSLETTMIYT--HTVRSLTIKEAESP 419 >gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str. Wilmington] Length = 306 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 247 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80] gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80] Length = 79 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 22 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 64 >gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium] Length = 162 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R +QS+LGH+ L TT IYT+V Sbjct: 120 VTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTTMIYTHV 161 >gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. Iowa] gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii str. Iowa] Length = 306 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836] Length = 299 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G ++R+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHP 295 >gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium] Length = 161 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT RHSFATHLL++G D+R++Q +LGHS + TT IYT+V Sbjct: 120 VTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMIYTHV 161 >gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM 16994] gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHS+AT L+ G DLR +Q +LGH+ L TTQIYT+V + + E + HP Sbjct: 212 LGVSPHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRHHP 269 >gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATH+L +G D+R++Q +LGHS + TTQIYT+V Sbjct: 121 VSCHTFRHSFATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162 >gi|89147516|gb|ABD62618.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+H LRH+FATHLL G D+R++Q +LGHS ++TTQIYT+V Sbjct: 122 TSHALRHAFATHLLEAGTDIRTLQELLGHSDVATTQIYTHV 162 >gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] Length = 319 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNVLRSEIIEHHP 305 >gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136] Length = 260 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT+RHSFATHLL G D+RS+Q +LGH+ + TT+IYT + Sbjct: 205 TAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEIYTQL 245 >gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] Length = 310 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLRSIQ++LGH + TT+IYT++++ + + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDTTTLRQEILNHHP 299 >gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium] Length = 167 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 126 SCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166 >gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +L +IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298 Query: 62 QKD 64 +D Sbjct: 299 PRD 301 >gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+ +I + HP Sbjct: 246 TITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHP 302 >gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +L +IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298 Query: 62 QKD 64 +D Sbjct: 299 PRD 301 >gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str. Madrid E] gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22] Length = 311 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium] Length = 161 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161 >gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii] Length = 335 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 272 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 313 >gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium] Length = 312 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V Sbjct: 272 SPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 312 >gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91] gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91] Length = 329 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R++Q +LGHS ++TT IYT+V +K Sbjct: 274 TPHTLRHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLNK 317 >gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5] gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5] Length = 306 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] Length = 282 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRHSFA HL+ G D++++Q ILGHS ++TTQ+Y KR Sbjct: 238 TPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYAAYVGKR 282 >gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G DLR++Q +LGH+ +STT IYT+V Sbjct: 120 PASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162 >gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246] gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5] gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246] gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5] Length = 306 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)] Length = 297 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATH L G D+R++Q +LGH+ + TTQIYT+V Sbjct: 247 TVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVKTTQIYTHV 289 >gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] Length = 306 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 26/46 (56%), Positives = 35/46 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHL 294 >gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH L TT IYT+V Sbjct: 121 VTCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162 >gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T HTLRHS+ATH++ +G LR IQ +LGH++ TT IYT+V+ + + E+ + +I+ Sbjct: 327 AVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQDLFEVANPLDVTIS 386 Query: 62 Q 62 Q Sbjct: 387 Q 387 >gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium] Length = 163 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R++Q +LGHS ++TT IYT+V Sbjct: 120 PATPHTFRHSFATHLLEDGYDIRTVQELLGHSDVTTTMIYTHV 162 >gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] Length = 293 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATH+L+NG L +++ +LGH+ LS TQ+YT+ + ++ IY HP Sbjct: 234 SPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTHNSFAQINSIYSHAHP 288 >gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2] gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2] Length = 465 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 25/39 (64%), Positives = 33/39 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL+ G D+R++Q +LGH+ +STT IYT+V Sbjct: 412 HALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHV 450 >gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str. Malish 7] gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 306 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHL 289 >gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8] gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8] Length = 321 Score = 60.5 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL +G D+R++Q +LGHS +STT IYT+V +K Sbjct: 266 TPHTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNK 309 >gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis URRWXCal2] gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2] Length = 306 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ Sbjct: 249 SPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHL 289 >gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 324 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRH++ATHLL G DLR +Q +LGH+ ++TTQ+YT+++ + Y HP Sbjct: 261 HTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTHIDISHIRSEYLLAHP 313 >gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] Length = 329 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 273 SPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKARYAQAFP 327 >gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington] Length = 297 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT Sbjct: 238 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYT 278 >gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090] gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02] gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18] gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140] gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1] gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1] gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332] gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679] gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035] gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090] gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae TCDC-NG08107] Length = 291 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 41/54 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 288 >gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] Length = 293 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ DL S++ +LGH +STT+IYT+ + + E+Y+Q HP Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHP 291 >gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 386 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 37/49 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL G D+R IQ +LGH+R TT +YT+V+ + +++I Sbjct: 307 TPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLLDI 355 >gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455] gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455] Length = 297 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATHLL G DLR++Q LGHS ++TT+ Y + + + + ++YD+ HP Sbjct: 244 HVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE-LRDVYDRAHP 295 >gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism] Length = 318 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 278 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTMIYTHV 318 >gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113] gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113] Length = 327 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R+IQ +LGH ++TT IYT+V Sbjct: 271 SCHTFRHSFATHLLENGYDIRTIQELLGHKDVNTTMIYTHV 311 >gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT LL G D+R IQ LGHS ++TTQIYT+V+ + +YD+ Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDKV 275 >gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 293 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ DL S++ +LGH +STT+IYT+ + + E+Y+Q HP Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHP 291 >gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19] gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11] gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18] gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2] gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] Length = 291 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/54 (50%), Positives = 41/54 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHH 288 >gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 VTCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 162 >gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv. campestris] gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] Length = 327 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH L G D+R++Q +LGH ++TTQIYT+V Sbjct: 267 TCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQIYTHV 307 >gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580] gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580] Length = 426 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL +G D+R+IQ +LGHS +STT +YT+V Sbjct: 372 CHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHV 411 >gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT LL G D+R IQ LGHS ++TTQIYT+V+ + +YD+ Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDKV 275 >gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATH+L +G D+R+IQ +LGH + TTQIYT+V Sbjct: 121 VSCHTLRHSFATHMLESGYDIRTIQELLGHRSVETTQIYTHV 162 >gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium] Length = 164 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 122 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 163 >gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT++ Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQIYTHI 305 >gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469] gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469] Length = 284 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT LL G D+R IQ LGHS ++TTQIYT+V+ + +YD+ Sbjct: 226 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDKV 280 >gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 339 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 25/39 (64%), Positives = 32/39 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V Sbjct: 278 HVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQV 316 >gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Reinekea sp. MED297] gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Reinekea sp. MED297] Length = 325 Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL+ G D+R+IQ ++GH L+TT IYT++ Sbjct: 268 VTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTMIYTHI 309 >gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162 >gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism] Length = 319 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS ATHLL +G D+R+IQ +LGH+ +STT IYT+V Sbjct: 279 TCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319 >gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 379 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G DLR IQS+LGH+ +TT+IYT+V Sbjct: 322 VTPHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHV 363 >gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATH L NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ASTHTLRHSFATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379] gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379] Length = 468 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/40 (67%), Positives = 32/40 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+HT RHSFATHLL G D+R IQ++LGHS L TT IYT+ Sbjct: 413 TSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTH 452 >gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402] Length = 305 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L++ G D+R +Q +LGH +STTQ YT++ ++++ +Y HP Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303 >gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33] gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33] gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236] gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101] gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33] gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33] gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236] gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101] Length = 319 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH RHSFAT LL G D+R++Q +LGHS L TTQIYT+V Sbjct: 264 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHV 305 >gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium] Length = 162 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 33/44 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 M +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 118 MRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] Length = 308 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL G +L++IQ +LGH ++TT+IYT+++ + + + HP Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHP 294 >gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 312 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M T H RHSFAT LL + D+R IQ +LGHS + TT+IYTNV++ + I HP Sbjct: 245 MHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVSTSKQNSILTAKHP 302 >gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14018] gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] Length = 357 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/53 (52%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + + Y Q P Sbjct: 303 HALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIQALKQRYSQAFP 355 >gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis V9] Length = 311 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q P Sbjct: 255 SPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFP 309 >gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 304 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DL +IQ+++GH ++TT+IYT++++ + E + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHP 299 >gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12] gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12] Length = 293 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHP 291 >gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238] gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238] Length = 327 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFAT +L G DLR+IQ +LGHS + TTQIYT+V Sbjct: 271 ASCHTFRHSFATRVLERGADLRTIQELLGHSDIKTTQIYTHV 312 >gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] Length = 308 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + HT RHSFATHLL G +L++IQ +LGH ++TT+IYT+++ + + + HP Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHP 294 >gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 433 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL NG ++R +Q +LGH L TT IYT+V Sbjct: 370 NASVHTLRHSFATHLLMNGVNIREVQDLLGHKNLETTMIYTHV 412 >gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum K10] Length = 287 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/39 (61%), Positives = 33/39 (84%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFA HL+S+G D++++Q ILGHS ++TTQ+Y Sbjct: 238 TPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli] Length = 325 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 304 >gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 305 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L++ G D+R +Q +LGH +STTQ YT++ ++++ +Y HP Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303 >gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ Sbjct: 213 TVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSN 255 >gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ Sbjct: 213 TVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSN 255 >gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATH++ G D+R++Q +LGH ++TTQIYT+V Sbjct: 120 PVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATTQIYTHV 162 >gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7] gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7] Length = 323 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R++Q+ LGH+ + TTQIYT+V Sbjct: 266 VTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTTQIYTHV 307 >gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis AD011] gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011] Length = 344 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q P Sbjct: 288 SPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFP 342 >gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVQTTMIYTHV 162 >gi|156138685|dbj|BAF75919.1| integron integrase [uncultured bacterium] Length = 180 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/38 (71%), Positives = 31/38 (81%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT Sbjct: 142 CHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYT 179 >gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii] gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii] Length = 325 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 304 >gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio caribbenthicus ATCC BAA-2122] Length = 327 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFAT LL +G D+R++Q +LGHS ++TTQIYT+V Sbjct: 263 TCHTFRHSFATELLRSGQDIRTVQELLGHSDVATTQIYTHV 303 >gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism] Length = 288 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 248 SCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288 >gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] Length = 308 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ + + HP Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHP 298 >gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El tor] Length = 361 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH RHSFAT LL G D+R++Q +LGHS L TTQIYT+V Sbjct: 306 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHV 347 >gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium] gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp. MED297] gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp. MED297] Length = 332 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFAT LL G D+R+IQ ILGHS + TTQIYT+V Sbjct: 277 VSCHTFRHSFATELLRQGTDIRNIQEILGHSSVETTQIYTHV 318 >gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] Length = 307 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L+S G D+R +Q +LGH +STTQ YT+V + + +Y + HP Sbjct: 251 SPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTPELLQMLYHRAHP 305 >gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4] gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA] gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ + + HP Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHP 298 >gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803] gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803] Length = 296 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 40/58 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFATHLL+ G +L +++ +LGHS L+ TQ+YT+ + + +I+ HP Sbjct: 234 LKKSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTHNSIAELSKIHQNAHP 291 >gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El Tor] Length = 362 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH RHSFAT LL G D+R++Q +LGHS L TTQIYT+V Sbjct: 307 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHV 348 >gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] Length = 339 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 283 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 337 >gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium] Length = 163 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium] Length = 180 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/38 (71%), Positives = 31/38 (81%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT Sbjct: 142 CHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYT 179 >gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238] gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238] Length = 202 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 134 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 174 >gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFAT LL NG D+R+IQ +LGH+ L TT IYT+V Sbjct: 122 SCHTLRHSFATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162 >gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92] gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92] Length = 323 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL G D+R++Q LGHS + TT+IYT+V Sbjct: 267 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTEIYTHV 308 >gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRHSFATHLL G DLR IQ +LGHS TT+IYT+V+ +I Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEANFSKI 345 >gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM 18228] gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM 18228] Length = 207 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ +L +++ +LGH LSTT++YT+ + + ++Y+Q HP Sbjct: 151 SPHVLRHTFATSMLNHQAELEAVKELLGHESLSTTEVYTHTTFEELKKVYEQAHP 205 >gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium] gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium] gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162 >gi|83722827|gb|ABC41685.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRH FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 120 PASCHTLRHCFATHLLDAGCDIRTLQELLGHKDIATTQIYTHV 162 >gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 317 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 37/60 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSFAT+L+ G D+ +Q ILGHS + TTQIY +V +++ EI HP K Sbjct: 253 TPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQAEILRDMHPRNNMK 312 >gi|94442308|dbj|BAE93653.1| integron integrase [uncultured bacterium] Length = 238 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V Sbjct: 197 TCHTFRHSFATHLLESGSDIRTIQELLGHADVRTTMIYTHV 237 >gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDAGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] Length = 330 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 37/43 (86%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +H+ RHSFATHLL +G DLR+IQ +LGHS ++TT+IYT+V ++ Sbjct: 273 SHSFRHSFATHLLEDGYDLRTIQELLGHSDITTTEIYTHVVNR 315 >gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 297 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL+ G D+ S++ +LGHS L++TQ+YT+ + + I+ +HP Sbjct: 238 SPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTHNSIAELKRIHGTSHP 292 >gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL G D+R+IQ +LGH+ + TT IYT+V Sbjct: 120 NVSVHTLRHSFATHLLEKGYDIRTIQELLGHANVQTTMIYTHV 162 >gi|89147379|gb|ABD62550.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 VTPHVLRHSFATHLLESGSDIRTVQELLGHKDVSTTVIYTHV 162 >gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162 >gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium] Length = 181 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/38 (71%), Positives = 31/38 (81%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT Sbjct: 143 CHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYT 180 >gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium] Length = 292 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 37/53 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+ ATH L + DLRS+Q LGH + +TQ+YT+++ + ++YD+ HP Sbjct: 234 HMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHP 286 >gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium] gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ANCHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] Length = 344 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/40 (57%), Positives = 32/40 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+Y Sbjct: 274 AVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVY 313 >gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G D+R++Q +LGHS + TT+IYT+V Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHSDVKTTEIYTHV 162 >gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli] gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei] gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae] gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae] gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli] Length = 325 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 304 >gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa] Length = 337 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 121 ATPHTLRHSFATHLLQGGYDIRTVQELLGHENVATTMIYTHV 162 >gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 292 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +T HTLRHSFATHLL G D+R IQ +LGH++L TT+ YT+V +K Sbjct: 227 STLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATK 271 >gi|110597335|ref|ZP_01385623.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM 13031] gi|110341171|gb|EAT59639.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM 13031] Length = 71 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/51 (54%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S T H LRHS+ATHLL G DLR IQ +LGH TT+IYT+V + +++I Sbjct: 14 SVTLHWLRHSYATHLLEAGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 64 >gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 33/40 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFA HL+ +G D+ ++Q++LGHS +TTQIYTN Sbjct: 238 TPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTN 277 >gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 37/49 (75%) Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 240 HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHP 288 >gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGH++L+TT YT V +K Sbjct: 168 TLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVATK 211 >gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 310 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 34/46 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT LL G +L IQ +LGH LSTTQIYT+V+ +RM Sbjct: 258 TPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTHVSEERM 303 >gi|89147524|gb|ABD62622.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 120 PVSCHTLRHSFATHLLQTGQDIRTVQELLGHADVSTTMIYTHV 162 >gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718] gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 323 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/45 (62%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R+IQ +LGH + TT IYT+V +K Sbjct: 268 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 312 >gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989] gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989] Length = 323 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HTLRHSFATHLL +G D+R++Q LGHS + TT+IYT+V Sbjct: 265 VSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHV 306 >gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str. Chicago] Length = 306 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 38/49 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HT RHS+ATHLL+ G DL S+Q +LGH+ ++TTQ+YT+V + ++ Sbjct: 241 VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQL 289 >gi|89147636|gb|ABD62677.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL G D+R++Q LGHS + TQIYT+V Sbjct: 121 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRMTQIYTHV 162 >gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 318 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR IQ++LGH + TT+IYT++ + + + HP Sbjct: 237 TISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHP 293 >gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q ++GH+ + TT IYT+V Sbjct: 120 AATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMIYTHV 162 >gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] Length = 323 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 266 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHV 307 >gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451] gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451] Length = 320 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIY +V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYAHV 305 >gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 459 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 36/49 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H +RHSFATHLL +G D+R++Q +LGH+ + TT IY +V ++ M + Sbjct: 404 TPHVMRHSFATHLLEDGYDIRTVQELLGHASVETTMIYLHVMNRPGMHV 452 >gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium] Length = 163 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162 >gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 319 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 38/53 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHS+ATH+L G +LR +Q +LGH+ +STTQ+YT+++ + Y HP Sbjct: 262 HTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIRSEYMAAHP 314 >gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3] gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3] Length = 342 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G DLR+IQ ++GH+ + TTQIYT+V Sbjct: 287 VTAHTFRHSFATALLRKGYDLRTIQELMGHTDIKTTQIYTHV 328 >gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 335 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 33/39 (84%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFA+HLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 281 HTLRHSFASHLLENGSDIRTVQELLGHADVKTTMIYTHV 319 >gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 75 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+FAT LL +G D+R IQ ILGHS ++ TQIYT+V+ + EI +P Sbjct: 13 IKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVSMDKQREILTNLNP 70 >gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701] gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701] Length = 278 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R+IQ +LGHS + TT IYT V Sbjct: 216 TCHTFRHSFATHLLERGQDIRTIQGLLGHSDVKTTMIYTQV 256 >gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301] gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301] Length = 313 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLLS G D+R+IQ +LGH L TT IYT+V Sbjct: 258 ASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHV 299 >gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428] gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428] Length = 353 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 36/49 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHLL G D+R++Q +LGH ++TT IYT+V ++ M + Sbjct: 299 TPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHVLNRPGMGV 347 >gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 314 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N Sbjct: 241 TPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLN 282 >gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901] gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901] Length = 355 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FAT+LL +G D+R+IQ +LGH LSTTQIYT+V Sbjct: 272 ASCHTFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313 >gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)] Length = 290 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R+++ LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 282 >gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFATHLL N D+R++Q +LGH +STT IYT+V Sbjct: 120 AATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHLL G DLR IQ +LGHS TT+IYT+V Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHV 337 >gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHL+ +G D+R+IQ +LGH+ + TT IYT+V Sbjct: 120 PVTCHTLRHSFATHLIEDGYDIRTIQELLGHTDVRTTMIYTHV 162 >gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB] gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB] Length = 327 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V +K Sbjct: 273 TPHTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYTHVLNK 316 >gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)] Length = 299 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R+++ LGH+ + TTQIYT+V Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 288 >gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 279 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 37/49 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH FATH++ NG ++R++Q +LGH ++TTQIYT++ K + +++ Sbjct: 224 PHMLRHMFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDKAVEDVF 272 >gi|156138689|dbj|BAF75921.1| integron integrase [uncultured bacterium] Length = 180 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/38 (71%), Positives = 31/38 (81%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT Sbjct: 142 CHTLRHSFATHLLEVGQDIRTIQELLGHSDVSTTMIYT 179 >gi|89147484|gb|ABD62602.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG ++R +Q +LGH + TT IYT+V Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162 >gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601] gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601] Length = 332 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/44 (61%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATHLL G D+R++Q +LGH +STT IYT+V +K Sbjct: 277 TPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320 >gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] Length = 293 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+FATHLL NG DLR IQ +LGHS + TT+IYT ++ + HP Sbjct: 235 SPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDDDSLRNSLSIHHP 289 >gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism] Length = 317 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V S Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVGS 317 >gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 305 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT+L+ G D+ +Q I GHS + TTQIY ++ +K+ EI + HP Sbjct: 241 TPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEILREMHP 295 >gi|89147462|gb|ABD62591.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFATHLL NG D+R++Q +LGHS + TT IYT+V Sbjct: 121 VTPHIFRHSFATHLLENGYDVRTVQELLGHSDVKTTMIYTHV 162 >gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908] gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908] Length = 319 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G D+R+IQ +LGHS + TTQIYT+V Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTQIYTHV 304 >gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2] gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2] Length = 167 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 110 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHV 151 >gi|89147512|gb|ABD62616.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG ++R +Q +LGH + TT IYT+V Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162 >gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718] gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718] Length = 292 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/45 (62%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R+IQ +LGH + TT IYT+V +K Sbjct: 237 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 281 >gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] Length = 304 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DL +IQ+++GH ++TT+IYT++++ + E + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHP 299 >gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 38/50 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH++ATHL+ +G DLR IQ +LGHS + TT IYT+V ++ + ++ Sbjct: 218 VTLHSLRHAYATHLMDSGTDLRMIQELLGHSDIKTTMIYTHVTTRSIQQV 267 >gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)] gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)] Length = 320 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+ Sbjct: 263 TVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVKTTQIYTH 304 >gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] Length = 313 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++YT++ + + + HP Sbjct: 252 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHP 308 >gi|89147557|gb|ABD62638.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSCHALRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] Length = 309 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DL +IQ ++GH ++TT+IYT+V+ + + HP Sbjct: 243 SPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVDRTALRADILRYHP 297 >gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium] gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium] gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium] gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium] gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTFRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH++ +G DLR++Q+ LGH+ ++TTQ+YT+V + + Q HP Sbjct: 243 SPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGHLKAVVRQHHP 297 >gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 208 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 41/64 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++L H + +TQIYT V+ + + ++ THP+ + Sbjct: 140 SCHLFRHAMATQMLENGADLRWIQAMLSHRSVESTQIYTQVSIRALQAVHASTHPAEREA 199 Query: 64 DKKN 67 D ++ Sbjct: 200 DSEH 203 >gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium] Length = 163 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFA+HLL +G D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFASHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R] Length = 293 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHP 291 >gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL G D+R+IQ +LGH +STT IYT+V Sbjct: 120 NVSCHTFRHSFATHLLEAGRDIRTIQELLGHKDVSTTMIYTHV 162 >gi|21674396|ref|NP_662461.1| integrase/recombinase-related protein [Chlorobium tepidum TLS] gi|21647577|gb|AAM72803.1| integrase/recombinase-related protein [Chlorobium tepidum TLS] Length = 86 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL +G DLR IQ +LGH TT+IYT+V+ K + +I Sbjct: 30 VTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKI 79 >gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 302 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 35/42 (83%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL +G D+R IQ++LGHS L+TT +YT V ++ Sbjct: 237 HTLRHSFATHLLEDGVDIRVIQALLGHSHLNTTALYTKVATR 278 >gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17] gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17] Length = 304 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++YT++ + + + HP Sbjct: 243 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHP 299 >gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 293 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHP 291 >gi|89147468|gb|ABD62594.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG ++R +Q +LGH + TT IYT+V Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162 >gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614] gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T YT V Sbjct: 224 TVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKV 264 >gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia coli MS 175-1] gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia coli MS 175-1] gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509] Length = 108 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 46 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 87 >gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 297 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATH+L G LR +Q +LGH L TTQ Y ++ +++ + Y HP Sbjct: 235 SPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQLKKSYINAHP 289 >gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335] gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335] Length = 302 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V +K Sbjct: 246 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNK 288 >gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] Length = 310 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLRSIQ++LGH + TT++YT++++ + + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDTTSLRQEILNHHP 299 >gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 357 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 301 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 355 >gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 297 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRHSFATH+L G +R +Q +LGH L TTQ Y V ++ + + Y + P Sbjct: 237 TPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEHLKQSYIEAFPRTRGD 296 Query: 64 D 64 D Sbjct: 297 D 297 >gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 311 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH++ +G DLRS+Q++LGH+ + TTQ+YT++ R+ E++ HP Sbjct: 246 SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLALGRLKEVHRLHHP 300 >gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 294 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++G + S++ +LGH++LSTT+IYT+ +++ +Y + HP Sbjct: 238 SPHVLRHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQLKRVYIEAHP 292 >gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)] Length = 296 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++ LGH+ + TTQIYT+V Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVKTTQIYTHV 288 >gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251] gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251] Length = 320 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/45 (60%), Positives = 33/45 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+H RHS+ATHLL G DLRSIQ +LGH + TT IYT+V S+ Sbjct: 264 VTSHIFRHSYATHLLQAGIDLRSIQELLGHKSVETTMIYTHVVSE 308 >gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ++LGH + TT IYT+V Sbjct: 121 ASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTTMIYTHV 162 >gi|89147543|gb|ABD62631.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism] Length = 347 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS + TT IYT+V Sbjct: 307 TCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMIYTHV 347 >gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238] gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] Length = 315 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 36/50 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHS AT LLSNG D+R +Q ILGH+ +STT+IYT+V + IY++ Sbjct: 260 HIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNK 309 >gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 308 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 37/49 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT LL +G +L IQ++LGH+ L+TTQ+YT+V+ RM + Sbjct: 256 TPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSDDRMASV 304 >gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 314 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLL G DL +IQ ++GH ++TT++YT+V+ + + HP Sbjct: 243 SPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVDRSALRADILRYHP 297 >gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL G +LR+IQ++LGH ++TT+IYT++ Sbjct: 238 NVSPHTFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHL 280 >gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1 str. NRG 857C] Length = 372 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328] gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328] Length = 277 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 220 SCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTRIYTHV 260 >gi|89147545|gb|ABD62632.1| integrase [uncultured bacterium] gi|89147549|gb|ABD62634.1| integrase [uncultured bacterium] gi|89147565|gb|ABD62642.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147602|gb|ABD62660.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33] gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33] Length = 282 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 220 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 260 >gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport] Length = 337 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147580|gb|ABD62649.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147572|gb|ABD62645.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] Length = 293 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++ L S++ +LGH+RLSTT+IYT+ +++ +Y HP Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHP 291 >gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 334 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147592|gb|ABD62655.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.] Length = 165 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/46 (56%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + ++H RHSFATHLL +G D+R+IQ +LGH +STT IYT+V +K Sbjct: 105 NVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNK 150 >gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism] Length = 310 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTL HSFATHLL +G D+R++Q +LGH+ +STT IYT+V Sbjct: 270 SPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310 >gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium HF0130_15N16] Length = 317 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS ATH+L G +R +Q +LGHS + +TQ+YT + IY + HP Sbjct: 252 TPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHP 306 >gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17] gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17] Length = 293 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++ L S++ +LGH+RLSTT+IYT+ +++ +Y HP Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHP 291 >gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii] gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii] gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida] gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii] gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae] Length = 337 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147532|gb|ABD62626.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 372 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 357 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 301 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 355 >gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147578|gb|ABD62648.1| integrase [uncultured bacterium] gi|89147604|gb|ABD62661.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum NCC2705] gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C [Bifidobacterium longum NCC2705] gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] Length = 357 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 301 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 355 >gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147667|gb|ABD62692.1| integrase [uncultured bacterium] Length = 163 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSKGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118] gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans] gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans] gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118] Length = 315 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++T QIY +V Sbjct: 267 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 307 >gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] Length = 293 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291 >gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT RHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VTSHTFRHSFATQLLESGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|89147586|gb|ABD62652.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 317 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH++ +G DLR++Q++LGH+ ++TTQ+YT++ R+ +++ HP Sbjct: 249 SPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLKQVHRLHHP 303 >gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] Length = 353 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 297 SPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 351 >gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442280|dbj|BAE93639.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 461 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V Sbjct: 282 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 324 >gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7] gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147440|gb|ABD62580.1| integrase [uncultured bacterium] Length = 164 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q ++GH ++TT IYT+V Sbjct: 121 NASCHTLRHSFATHLLEDGYDIRTVQELMGHKNVNTTMIYTHV 163 >gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162 >gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334] gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334] Length = 212 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 147 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 203 >gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057] gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056] gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057] Length = 344 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar Infantis] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033] gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|155024|gb|AAA72104.1| integrase [Shigella sonnei] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa] Length = 323 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii] gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum] gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli] gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae] gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae] gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105] gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1] gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5] gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa] gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum] gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri] gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum] gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa] gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104] gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa] gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium] gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium] gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii] gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa] gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa] gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum] gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae] gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa] gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli] gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa] gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa] gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii] gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli] gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa] gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa] gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae] gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida] gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae] gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica] gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae] gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae] gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae] gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida] gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa] gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa] gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa] gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105] gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae] gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae] gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1] gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5] gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes] gi|321268198|gb|ADW78905.1| IntI [Escherichia coli] gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes] gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli] gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium] gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1] gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU] gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli] gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli] gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae] gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda] gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa] gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli] gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes] gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes] gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans] gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli] gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli] gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa] gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae] gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli] gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa] gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli] gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium] gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli] gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii] gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae] gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae] gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Kentucky] gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae] gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli] gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii] gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1] gi|108945866|gb|ABG23475.1| integrase [Morganella morganii] gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa] gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa] gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae] gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa] gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae] gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU] gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa] gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa] gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa] gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca] gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2] gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii] gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX] gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli] gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli] gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii] gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli] gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli] gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli] gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa] gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae] gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii] gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa] gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda] gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii] gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium] gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] Length = 290 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFAT +L++ L S++ +LGH LSTT+IYT+ +++ IY HP Sbjct: 234 TPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQLKRIYKNAHP 288 >gi|225376010|ref|ZP_03753231.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM 16841] gi|225212165|gb|EEG94519.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM 16841] Length = 85 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T H RHSFAT+L+ ++R IQ +LGH+ ++TTQIYT V +++ EI HP Sbjct: 13 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHP 70 >gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059] gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059] Length = 318 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 256 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 296 >gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium] Length = 316 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 276 TTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316 >gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33] gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33] Length = 311 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 249 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 289 >gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259] gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259] Length = 326 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/44 (61%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATHLL G D+R++Q +LGH +STT IYT+V +K Sbjct: 272 TPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 315 >gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] Length = 286 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+FAT+LL G +LR IQ +LGHS L +TQIYT+V+ Sbjct: 227 PHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVS 267 >gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa] Length = 336 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|9507567|ref|NP_052898.1| integrase [Plasmid R100] gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46] gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium] gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata] gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium] gi|58000325|ref|YP_190211.1| integrase [Escherichia coli] gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli] gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa] gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520] gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae] gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila] gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae] gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171] gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1] gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae] gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae] gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae] gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae] gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae] gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae] gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli] gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-] gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105] gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1] gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1] gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1] gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1] gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1] gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli] gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3] gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|2120150|pir||I39499 integrase - Acinetobacter baumannii gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae] gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa] gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa] gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa] gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa] gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli] gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa] gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46] gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa] gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii] gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79] gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli] gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100] gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli] gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46] gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium] gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida] gi|30349168|gb|AAP20904.1| integrase [Escherichia coli] gi|30349183|gb|AAP20918.1| integrase [Escherichia coli] gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli] gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium] gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa] gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida] gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae] gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae] gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae] gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica] gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a] gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa] gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa] gi|47716827|gb|AAT37602.1| integrase [Escherichia coli] gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae] gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa] gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium] gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae] gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae] gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa] gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae] gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli] gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans] gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa] gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli] gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica] gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila] gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar] gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8] gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11] gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae] gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium] gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae] gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae] gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5] gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa] gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa] gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa] gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa] gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa] gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae] gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa] gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa] gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae] gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6] gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae] gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli] gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa] gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae] gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae] gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli] gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm] gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa] gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171] gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1] gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa] gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport] gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa] gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae] gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes] gi|225730210|gb|ACO24921.1| integrase [Escherichia coli] gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae] gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae] gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae] gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae] gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri] gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli] gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa] gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa] gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli] gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae] gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa] gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa] gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa] gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa] gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca] gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017] gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-] gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042] gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes] gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans] gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni] gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli] gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli] gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida] gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana] gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3] gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105] gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae] gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1] gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1] gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1] gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1] gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1] gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Enteritidis] gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli] gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae] gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1] gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10] gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium] gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli] gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli] gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489] gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3] gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253] gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens] gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227] gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3] gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671] gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671] gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218] gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6] gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272] gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227] gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304] gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism] Length = 307 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 267 SCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307 >gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium] Length = 138 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 96 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138 >gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium] gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 349 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++T QIY +V Sbjct: 301 TCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 341 >gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047] Length = 144 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFAT LL G D+R++Q +LGH+ ++TT IYT+V +K Sbjct: 87 CTCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTHVLNK 131 >gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2] Length = 305 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 265 SCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305 >gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism] Length = 308 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 268 SCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308 >gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ] gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi SZ] Length = 325 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 37/51 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V +K M + Sbjct: 267 NVTPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHVLNKGGMGV 317 >gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01] gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01] Length = 321 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL G D+R++Q +LGHS + TT IYT+V Sbjct: 267 TPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIYTHV 307 >gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium] gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 32/39 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 124 HTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162 >gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LG +STT IYT+V Sbjct: 121 ASTHTLRHSFATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162 >gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 158 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGH++L+ T YT V +K Sbjct: 88 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATK 133 >gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 299 SPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 353 >gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 286 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ Sbjct: 223 TVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 265 >gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)] Length = 293 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T +TLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 106 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/45 (57%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL D+R IQ +LGHS+L TT +YT V+++ Sbjct: 39 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYTKVSTR 83 >gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162 >gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408] Length = 298 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 370 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/50 (54%), Positives = 37/50 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL +G D+R IQ +LGH +TT+IYT+V++K + I Sbjct: 314 VTLHWLRHSYATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKSIQSI 363 >gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] Length = 306 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRHSFAT LL G DLR IQ +LGHS + TT++YT++++ + + + HP Sbjct: 241 TISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDNTSLRKDILEHHP 297 >gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5] gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908] gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908] Length = 319 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL G D+R++Q +LGH+ L+TT+IYT+V Sbjct: 265 CHTFRHSFATHLLQTGTDIRTVQELLGHNDLNTTKIYTHV 304 >gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae] Length = 320 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412] gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412] Length = 337 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 159 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 95 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137 >gi|89147418|gb|ABD62569.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEAGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|71279488|ref|YP_270656.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71145228|gb|AAZ25701.1| site-specific recombinase, phage integrase family, truncated [Colwellia psychrerythraea 34H] Length = 74 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL NG D+ ++Q +LGH+ L TTQIYT V Sbjct: 19 TAHTFRHSFATQLLLNGADISTVQELLGHNDLRTTQIYTYV 59 >gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY] gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY] Length = 332 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATH+L G D+R++Q +LGH +STT IYT+V +K Sbjct: 277 TPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320 >gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium] gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium] Length = 163 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 32/39 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 124 HTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162 >gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] Length = 298 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238] gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 275 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H LRHSFAT L+ DLR +Q +LGH+ L+TTQIYT++ + + + + HP Sbjct: 213 LAVSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTILKYHP 270 >gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str. Chicago] Length = 297 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L+ G D+R Q +LGH+ +STTQ Y +V S+++ ++Y + HP Sbjct: 241 SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHP 295 >gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH] gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH] Length = 269 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFAT++L NG + + +LGH +STTQIYT +++ ++ Y + HP Sbjct: 211 VTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSNSLKLQNYLKAHP 266 >gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 285 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL G D+R IQ +LGH+ LSTT YT V++ Sbjct: 222 TVHTLRHSFATHLLEAGTDIRIIQVLLGHNNLSTTARYTQVSN 264 >gi|89147359|gb|ABD62540.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G ++R+IQ +LGH ++TT IYT+V Sbjct: 121 ATCHTLRHSFATHLLDSGYNIRTIQDLLGHKDVATTMIYTHV 162 >gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri] gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238] Length = 337 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKPTQIYTHV 162 >gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 357 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R+IQ +LGH + TT IYT+V Sbjct: 276 ASCHTFRHSFATHLLESGYDIRTIQELLGHKDVKTTMIYTHV 317 >gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b] gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b] Length = 356 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 37/56 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHSFA LL+NG +++ +Q ++GHS ++ TQ+YT+VN + +IY H Sbjct: 296 EITPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTHVNKTFLKDIYMNAH 351 >gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 324 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL G D+RSIQ +LGH + TT+IYT+V+ + HP Sbjct: 241 SPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLKLHHP 295 >gi|218508164|ref|ZP_03506042.1| site-specific tyrosine recombinase XerD [Rhizobium etli Brasil 5] Length = 54 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 36/52 (69%) Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 +HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q K Sbjct: 1 SHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQAKK 52 >gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium] Length = 159 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVR 159 >gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 120 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162 >gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 450 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T+HT RH FATHLL G D+R IQ +LGHS + TT+IYT+V + Sbjct: 381 TSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRN 423 >gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9] gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9] Length = 98 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 36 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 76 >gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium] Length = 161 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160 >gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium] Length = 160 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160 >gi|119900014|ref|YP_935227.1| integrase [Azoarcus sp. BH72] gi|119672427|emb|CAL96341.1| putative truncated integrase [Azoarcus sp. BH72] Length = 66 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/45 (60%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHS ATHLL G D+R++Q +LGH+ +STT IYT+V +K Sbjct: 10 VTVHTLRHSVATHLLEGGYDIRTVQELLGHADVSTTMIYTHVLNK 54 >gi|13474989|ref|NP_106548.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025735|dbj|BAB52334.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 82 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/44 (63%), Positives = 34/44 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T YT V++ Sbjct: 18 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSN 61 >gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47] Length = 446 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL G D+R++Q ++GH+ +STT IY +V ++ Sbjct: 385 HTLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNR 426 >gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597] gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597] Length = 295 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium] gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium] gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium] Length = 316 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 276 TTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316 >gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism] Length = 307 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 267 SCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307 >gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 122 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFATHLL G D+R+IQ +LGH +STT IYT+V Sbjct: 121 VSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMIYTHV 162 >gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli] Length = 337 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] Length = 374 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRHSFATHLL G D+R IQ +LGHS TT IYT+V + +I Sbjct: 317 ATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYTHVTQTSLKKI 366 >gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238] gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238] gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238] gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238] gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238] gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238] gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238] gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium] gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium] gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium] gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium] gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium] gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium] gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium] gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238] gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238] gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238] gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238] gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238] gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 288 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ Sbjct: 225 TVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSN 267 >gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14] gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14] Length = 304 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT++ + + + HP Sbjct: 245 SPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHP 299 >gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238] gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755] gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755] Length = 137 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V Sbjct: 81 IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHV 124 >gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059] Length = 200 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 130 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 171 >gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238] gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238] gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238] gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4] Length = 337 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii] Length = 320 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 355 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 299 SPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFP 353 >gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147452|gb|ABD62586.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162 >gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579] gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149] gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium] Length = 161 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160 >gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PVTPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|330399472|ref|YP_004030570.1| DNA integration/recombination/inversion protein [Burkholderia rhizoxinica HKI 454] gi|312170209|emb|CBW77248.1| DNA integration/recombination/inversion protein [Burkholderia rhizoxinica HKI 454] Length = 102 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H H+ T +L NG D+R +Q +L H++L++TQ+YT V + M EIY THP+ Sbjct: 16 SGSCHLFHHTMVTLMLENGADVRFMQVMLHHAQLTSTQMYTQVAIREMNEIYTATHPAWL 75 Query: 62 QKDKKN 67 ++ ++ Sbjct: 76 ERPEQQ 81 >gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158 >gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238] gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42] gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42] Length = 332 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATH+L G D+R++Q +LGH +STT IYT+V +K Sbjct: 277 TPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320 >gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315 >gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium] gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium] gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium] gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium] gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium] gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium] gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium] gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium] gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium] gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium] gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium] gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium] gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium] gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium] gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium] gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium] gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium] gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium] gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium] gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium] gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium] gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium] gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium] gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium] gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195] gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195] Length = 319 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G D+R+IQ +LGHS + TT+IYT+V Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304 >gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTFRHSFATHLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162 >gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442] gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238] gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V Sbjct: 252 TLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASV 292 >gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] Length = 363 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 32/44 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V Sbjct: 307 VRVTPHVLRHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHV 350 >gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium] gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium] gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium] gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275] gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136] gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217] gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217] Length = 319 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G D+R+IQ +LGHS + TT+IYT+V Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304 >gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a] Length = 337 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)] Length = 290 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFAT+LL G D+R++ +LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVKTTQIYTHV 282 >gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246] Length = 322 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/44 (54%), Positives = 35/44 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+H+ RHSFATHL+ +G D+R++Q +LGH + TT IYT+V +K Sbjct: 267 TSHSFRHSFATHLIESGTDIRTVQELLGHESVETTMIYTHVLNK 310 >gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 124 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V Sbjct: 68 IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHV 111 >gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 307 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 42/58 (72%), Gaps = 1/58 (1%) Query: 4 TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +AH LRHSFAT+LLS + DLR++Q +LGH+ +STTQIYT++ K+ + P++ Sbjct: 243 SAHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKKKQAMAAVQPNL 300 >gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium] gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium] gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium] gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium] gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium] gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium] gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium] gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium] gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium] gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium] gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium] gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium] gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium] gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium] gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium] gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHL+ +G D+R++Q +LGH+ + TT IYT+V Sbjct: 121 ATCHTFRHSFATHLIEDGYDIRTVQELLGHADVRTTMIYTHV 162 >gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium] gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium] gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium] gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium] gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium] Length = 158 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis] Length = 337 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium] Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium] Length = 162 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6] gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6] Length = 321 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHL+ NG D+R++Q +LGHS + TT IYT+V Sbjct: 267 SCHTFRHSFATHLIENGYDIRTVQELLGHSDVKTTMIYTHV 307 >gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001] gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001] Length = 325 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL G D+R+IQ +LGH +STT IYT+V Sbjct: 268 AASCHTFRHSFATHLLERGQDIRTIQELLGHKDVSTTMIYTHV 310 >gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 160 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/44 (59%), Positives = 33/44 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHSFATHLL D+R IQ +LGHS+L TT +YT V++ Sbjct: 93 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLETTALYTKVST 136 >gi|89147454|gb|ABD62587.1| integrase [uncultured bacterium] Length = 163 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162 >gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 356 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/39 (66%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D+R IQ +LGH+ + TTQIYT+V Sbjct: 303 HGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIYTHV 341 >gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399] gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385] Length = 291 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G D+R++Q ++GH + TT IYT+V Sbjct: 120 PVTCHMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162 >gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 291 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium] Length = 315 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow] Length = 130 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 66 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 108 >gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6] gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6] Length = 293 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHP 291 >gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] Length = 319 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFAT LL G D+R++Q +LGH +STTQIYT+V Sbjct: 264 TCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHV 304 >gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHLL G D+R+IQ ++GH+ +STT IYT+V Sbjct: 122 SCHSLRHSFATHLLEAGYDIRTIQELMGHADVSTTMIYTHV 162 >gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190] gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902] Length = 291 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013] gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013] gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355] gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196] Length = 291 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 40/54 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 235 SPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHH 288 >gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium] Length = 315 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110] gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110] Length = 290 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/49 (55%), Positives = 36/49 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL D+R IQ +LGH +L TT +YT+V ++ + E+ Sbjct: 233 TMHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREV 281 >gi|114217147|dbj|BAF31250.1| integron integrase [uncultured bacterium] Length = 148 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHT RHS+ATHLL NG D+R+I +LGH L TT IYT+V Sbjct: 108 SAHTFRHSYATHLLQNGIDIRTISGLLGHKNLQTTMIYTHV 148 >gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 286 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/49 (55%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH +L TT +YT V K + E+ Sbjct: 225 SMHTLRHSFATHLLERKTDIRVIQVLLGHRKLDTTAVYTRVALKAIREV 273 >gi|89147559|gb|ABD62639.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHGLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8] gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8] Length = 329 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +HT RHSFAT LL +G DLR+IQ +LGHS + TT+IYT+V K Sbjct: 273 SHTFRHSFATRLLESGYDLRTIQKLLGHSDVRTTEIYTHVVRK 315 >gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] Length = 301 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++G L S++ +LGH LSTT+IYT+ +++ +Y HP Sbjct: 243 SPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQLKNVYTNAHP 297 >gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa] Length = 132 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 68 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 110 >gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium] Length = 162 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans 2-40] gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40] Length = 373 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT+LL G D+R+IQ +LGH+ +STTQIYT+V Sbjct: 274 CHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQIYTHV 313 >gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] Length = 323 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R+IQ +LGHS + TT IYT+V Sbjct: 268 SCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTMIYTHV 308 >gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSF THLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27] gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27] Length = 87 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHT RHSFATHLL G D+R+IQ +LGH L TT IYT+V Sbjct: 29 VSAHTFRHSFATHLLQRGIDIRTIQDLLGHRDLETTMIYTHV 70 >gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405] gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405] Length = 335 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL G D+R+IQ +LGHS + TT +YT+V Sbjct: 281 CHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHV 320 >gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] Length = 293 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEELKKVYKQAHP 291 >gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 345 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 38/58 (65%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 RH+ AT +L NG DLR IQ++LGH + +TQ YT V+ + + ++ THP+ +D+ Sbjct: 280 FRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRALQAVHASTHPAEQTEDE 337 >gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+ + + ++Y HP Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHP 293 >gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium] Length = 315 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium] Length = 315 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium] Length = 162 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium] Length = 315 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium] Length = 315 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium] Length = 162 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 120 ASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27] gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27] Length = 320 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 25/39 (64%), Positives = 32/39 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 267 HTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 305 >gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17] gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17] Length = 319 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT LL G D+R++Q +LGH+ L TTQIYT+V Sbjct: 267 CHTFRHSFATELLKRGNDIRTVQDLLGHADLRTTQIYTHV 306 >gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATH L G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHPLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147534|gb|ABD62627.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLKRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147422|gb|ABD62571.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTLRHSFATHLLQQGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella amazonensis SB2B] gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella amazonensis SB2B] Length = 318 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 264 CHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHV 303 >gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] Length = 428 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/43 (62%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G LR IQ ILGH TT+IYT++ Sbjct: 368 NVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHI 410 >gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM] gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD] Length = 358 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 31/42 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS+ATHLL G D+R IQ LGH+ + TTQIYT V S+ Sbjct: 304 HGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSE 345 >gi|229006394|ref|ZP_04164069.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4] gi|228754858|gb|EEM04228.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4] Length = 44 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 33/42 (78%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 1 MENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHP 42 >gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHLLQPNTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001] gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001] Length = 323 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T +LRHSFATHLL G D+R+IQ +LGHS L TT IYT+V Sbjct: 268 TCQSLRHSFATHLLERGQDIRTIQELLGHSDLKTTMIYTHV 308 >gi|89147472|gb|ABD62596.1| integrase [uncultured bacterium] Length = 163 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHS AT LL +G DLR+IQ +LGH+ +STT IYT+V Sbjct: 121 VTAHTFRHSLATRLLEHGYDLRTIQELLGHADISTTAIYTHV 162 >gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 336 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57 + + H LRHS ATHLL DLR IQS+LGH+ L +TQ Y + ++++ +I D+T Sbjct: 273 TVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTGLSEIARKLSKIRDETP 332 Query: 58 PS 59 P+ Sbjct: 333 PA 334 >gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+ + + ++Y HP Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHP 293 >gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium] Length = 161 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 119 PVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161 >gi|223369818|gb|ACM88778.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|156138693|dbj|BAF75923.1| integron integrase [uncultured bacterium] Length = 180 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/38 (68%), Positives = 30/38 (78%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HTLRHSFATHLL G D+R+ Q +LGHS +STT IYT Sbjct: 142 CHTLRHSFATHLLEAGQDIRTTQELLGHSDVSTTMIYT 179 >gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] Length = 292 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N L S++ +LGH + TT++YT+V +++ + Y++ HP Sbjct: 236 SPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQLKKAYNEAHP 290 >gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFAT LL +G D+R++Q +LGH +STTQIYT+V Sbjct: 121 ASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTQIYTHV 162 >gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+ RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHSFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R+IQ +LGH+ + TT IYT+V Sbjct: 122 SCHTFRHSFATHLLEAGYDIRTIQELLGHADVQTTMIYTHV 162 >gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227] gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227] Length = 91 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 29 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 69 >gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism] Length = 266 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 226 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 266 >gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium] Length = 117 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 77 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117 >gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15] gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15] Length = 334 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 279 TPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHV 319 >gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] Length = 290 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H++RHSFATH+L G L +Q +LGH L TTQ Y V + + Y HP Sbjct: 228 NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGHLRDSYMAAHP 284 >gi|223369834|gb|ACM88786.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris] Length = 327 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH G D+R++Q +LGH ++TTQIYT+V Sbjct: 267 TCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATTQIYTHV 307 >gi|89147450|gb|ABD62585.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT LL G D+R+IQ +LGHS ++TT+IYT+V Sbjct: 123 CHTFRHSFATQLLQKGHDIRTIQELLGHSDVATTEIYTHV 162 >gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47] Length = 408 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T+HT RH FATHLL G D+R IQ +LGHS + TT+IYT+V + Sbjct: 339 TSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRN 381 >gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATH L G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917] gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917] Length = 323 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL G D+R+IQ +LGH + TT IYT+V Sbjct: 266 AASCHTFRHSFATHLLERGQDIRTIQELLGHQDVCTTMIYTHV 308 >gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DLR+IQ +LGH+ + TT IY +V S Sbjct: 311 VHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTS 352 >gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] Length = 302 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL +G D+R IQ +LGHS+L T +YT V ++ Sbjct: 237 HTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATR 278 >gi|89147438|gb|ABD62579.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q ++GH ++TT IYT+V Sbjct: 120 PVSCHMLRHSFATHLLEQGCDIRTVQQLMGHKNVATTMIYTHV 162 >gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] Length = 334 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T H RHSFAT+L+ ++R IQ +LGH+ ++TTQIYT V +++ EI HP Sbjct: 262 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHP 319 >gi|89147638|gb|ABD62678.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T + RHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 121 ATCRSFRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162 >gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 297 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRHS+ T LL NG DL SIQS++GH+ L+TT+IYT+V+ K + Sbjct: 241 TIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVDMKHL 286 >gi|91215841|ref|ZP_01252810.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC 700755] gi|91185818|gb|EAS72192.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC 700755] Length = 84 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPS 59 +T HTLRHSFATHL+ G LR IQ+ LGH+ TT+IYT V N+K + D + S Sbjct: 15 STPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDNMYES 74 Query: 60 ITQKDKK 66 ++ + K Sbjct: 75 VSLDENK 81 >gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 283 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRHSFATHLL G DLR IQ +LGH TT+IYT++ ++ + I Sbjct: 223 VSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKTTEIYTHITTQNISRI 272 >gi|89147574|gb|ABD62646.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQEPLGHKDVSTTMIYTHV 162 >gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium] Length = 163 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH FATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTPHIFRHCFATHLLEAGYDIRTVQELLGHKDVKTTQIYTHV 162 >gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] Length = 293 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291 >gi|189346557|ref|YP_001943086.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245] gi|189340704|gb|ACD90107.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245] Length = 64 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 35/49 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL G DLR IQ +LGH TT+IYT+V + +++I Sbjct: 9 TLHGLRHSYATHLLEVGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 57 >gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1] Length = 347 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V Sbjct: 168 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 210 >gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4] gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2] gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2] gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4] gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2] Length = 293 Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291 >gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 312 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T H RHSFAT+L+ ++R IQ +LGH+ ++TTQIYT V +++ EI HP Sbjct: 240 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHP 297 >gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum] gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 321 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS ATHLL G DLR IQ +LGH L TTQ YT+V Sbjct: 257 TPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHV 297 >gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510] gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510] Length = 366 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DLR+IQ +LGH+ + TT IY +V S Sbjct: 309 VHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTS 350 >gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 291 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/53 (54%), Positives = 35/53 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HTLRHSFAT+LL NG D+R IQ LGHS + TTQ YT++ K + HP Sbjct: 237 HTLRHSFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTNTIMKHHP 289 >gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 363 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V Sbjct: 310 SPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 350 >gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002] gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002] Length = 274 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL+ G D+R+IQ +LGH L TT IYT+V Sbjct: 220 SVHCLRHSFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 260 >gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36] Length = 366 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DLR+IQ +LGH+ + TT IY +V S Sbjct: 309 VHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTS 350 >gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A] Length = 293 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291 >gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1] gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1] Length = 292 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 236 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 290 >gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1] gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1] Length = 292 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V Sbjct: 113 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKV 155 >gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22] gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22] Length = 293 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291 >gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 302 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 34/42 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL +G D+R IQ +LGH++L++T YT V ++ Sbjct: 237 HTLRHSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATR 278 >gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 375 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V Sbjct: 322 SPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHV 362 >gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 302 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291 >gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism] Length = 294 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 254 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 294 >gi|258592425|emb|CBE68734.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 89 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGHS + TT +YT+V Sbjct: 34 TCHTFRHSFATHLLEGGYDIRTVQELLGHSDVKTTMMYTHV 74 >gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium] Length = 158 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 310 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 31/43 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHSFA H++ G DLR +Q LGH+ ++TTQ+Y + S Sbjct: 245 TPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKS 287 >gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 290 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 34/44 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL D+R IQ +LGH++LSTT YT+V +K Sbjct: 222 TLHTLRHSFATHLLEANIDVRVIQVLLGHAKLSTTARYTHVATK 265 >gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234] gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] Length = 286 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V+ Sbjct: 223 SVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVS 264 >gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 333 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFA LL +G D+R++Q +LGHS +STT IYT++ Sbjct: 275 TPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHM 315 >gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium] Length = 163 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R+IQ +LGH + TT IYT+V Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTIQKLLGHRDVRTTMIYTHV 162 >gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289] gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289] Length = 292 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 236 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 290 >gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334] gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334] Length = 280 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ +LGHS +S TQIYT+V+ + EI +P Sbjct: 215 TITPHMFRHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVSHSKQKEILSSFNP 271 >gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa] Length = 281 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 219 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259 >gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319] gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319] Length = 292 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y+ HP Sbjct: 236 SPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQLKKVYNNAHP 290 >gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism] Length = 286 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 246 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 286 >gi|94442288|dbj|BAE93643.1| integron integrase [uncultured bacterium] Length = 162 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RH FATHLL NG D+R+IQ +LGH ++TT IYT+V Sbjct: 122 SHAFRHCFATHLLQNGHDIRTIQELLGHKHVTTTMIYTHV 161 >gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193] gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193] Length = 306 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/48 (56%), Positives = 36/48 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL D+R IQ +LGH++L+TT YT+V +K + + Sbjct: 238 TLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRD 285 >gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium] Length = 161 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 30/40 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT Sbjct: 121 VACHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160 >gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAERDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147582|gb|ABD62650.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL N D+R++Q +LGH +STT IYT+V Sbjct: 121 ANCHSLRHSFATHLLGNSYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 294 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 238 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 292 >gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3] Length = 316 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/39 (66%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL G D R++Q +LGHS +STT IYT+V Sbjct: 278 HTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYTHV 316 >gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231] gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231] Length = 194 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R+IQ +LGH ++TT IYT+V Sbjct: 138 PASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHV 180 >gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism] Length = 306 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 266 SCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 306 >gi|89147659|gb|ABD62688.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHRDVRTTMIYTHV 162 >gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] Length = 257 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 35/49 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RHS AT LL NG D+R +Q ILGH+ ++TT++YT+V ++ IY+ Sbjct: 202 HIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTHVEKSKLKIIYN 250 >gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHL+ G D+R++Q +LGH +STT IYT+V Sbjct: 121 VSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] Length = 301 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT +L D+R IQ ILGHS ++TTQIYT++++ + EI +P Sbjct: 238 TPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIMSHKNP 292 >gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] Length = 293 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGH ++TT+IY + + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEELKKVYKQAHP 291 >gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 379 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPS 59 +T HTLRHSFATHL+ G LR IQ+ LGH+ TT+IYT V N+K + D + S Sbjct: 310 STPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDTMYES 369 Query: 60 ITQKDKK 66 ++ + K Sbjct: 370 VSLDENK 376 >gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium] Length = 315 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS + TT IYT+V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMIYTHV 315 >gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 401 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L++G DL S++ +LGH LSTT YT+++ +++ ++Y+ HP ++ Sbjct: 242 SPHVLRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHPRAKKE 300 Query: 64 D 64 + Sbjct: 301 E 301 >gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+ RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 122 SCHTFRHSFATHLLEAGYDIRTVQELLGHKDVTTTMIYTHV 162 >gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 298 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/46 (54%), Positives = 36/46 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HTLRH++A+HL NG + SIQ +LGHS L++TQIY +VN++ + Sbjct: 241 TIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTEHL 286 >gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein [Shewanella benthica KT99] gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein [Shewanella benthica KT99] Length = 312 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 34/45 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AHT RHSFAT LL +G D+R++Q +LGH+ + TT++YT+V R Sbjct: 259 AHTFRHSFATQLLQHGSDIRTVQELLGHTDVKTTELYTHVIGTRF 303 >gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] Length = 292 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++G L S++ +LGH +STT+IYT+ +++ + Y HP Sbjct: 236 TPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQLKQAYKDAHP 290 >gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11] gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11] Length = 295 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/44 (61%), Positives = 33/44 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R IQ +LGH++L+ T YT V +K Sbjct: 227 TLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATK 270 >gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli] Length = 337 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY +V Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYXHV 315 >gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHL+ +G D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTFRHSFATHLIEDGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+ RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 302 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL +G ++R IQ++LGH+ L+TT Y V +K ++ Sbjct: 237 HTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKV 283 >gi|89147510|gb|ABD62615.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G ++R +Q +LGH+ + TT IYT+V Sbjct: 121 ATVHTLRHSFATHLLLAGTNIREVQELLGHANVETTMIYTHV 162 >gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri] Length = 313 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/39 (66%), Positives = 32/39 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae] gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae] Length = 313 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/39 (66%), Positives = 32/39 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium] Length = 150 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 110 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150 >gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium] Length = 149 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 110 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149 >gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14] gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14] Length = 289 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 35/49 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH++L TT +Y V +K + ++ Sbjct: 225 SMHTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATKAIQQV 273 >gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium] Length = 163 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009] Length = 136 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 96 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136 >gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism] Length = 311 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/40 (60%), Positives = 33/40 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+ Sbjct: 272 SVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTH 311 >gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380] gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380] Length = 330 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/44 (54%), Positives = 35/44 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K + Sbjct: 277 HTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKNI 320 >gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] Length = 294 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFATHLLS+G +LR++Q +LGH L T+ YT++ ++ + HP Sbjct: 237 HALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHLGIDQLARTMENLHP 289 >gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae] Length = 313 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/39 (66%), Positives = 32/39 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] Length = 301 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGHS+L TT +Y V +K + + Sbjct: 235 SPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSV 283 >gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans] Length = 287 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 225 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265 >gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium] Length = 160 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 120 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160 >gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1] gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1] Length = 338 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATH+L G D+R++Q +LGH+ + TT IYT+V Sbjct: 283 SPHVLRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTHV 323 >gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294] gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294] Length = 338 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 29/40 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T+H RHS+ATHLL G DLRSIQ +LGH + TT IYT Sbjct: 266 VTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVETTMIYT 305 >gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] Length = 294 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ +L +I+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNQAHP 292 >gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium] Length = 157 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|89147561|gb|ABD62640.1| integrase [uncultured bacterium] gi|89147622|gb|ABD62670.1| integrase [uncultured bacterium] Length = 163 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL +G D+R++Q +L H +STT IYT+V Sbjct: 121 VTVHALRHSFATHLLESGYDIRTVQELLSHRHVSTTMIYTHV 162 >gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium] gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium] gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium] gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium] gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium] gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium] gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium] gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium] gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium] gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium] Length = 157 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 295 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/48 (56%), Positives = 36/48 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL D+R IQ +LGH++L+TT YT+V +K + + Sbjct: 227 TLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRD 274 >gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium] Length = 239 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 198 TPHTLRHSLATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 238 >gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2] gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2] Length = 341 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 35/44 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH++ATHLL +G D+R++Q +LGH+ ++TT IYT+ + + Sbjct: 285 TPHRLRHAYATHLLESGVDIRTVQDMLGHADVATTMIYTHTSVR 328 >gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium] Length = 160 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 120 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160 >gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium] Length = 238 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R+IQ +LG + + TT IYT+V Sbjct: 197 TCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYTHV 237 >gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855] gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855] Length = 318 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R+IQ +LGH +L TT Y +V Sbjct: 258 TCHTLRHSFATHLLQDGTDVRTIQRLLGHEQLRTTMQYVHV 298 >gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium] Length = 161 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS ATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 120 VSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161 >gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium] Length = 312 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 HT RH+FA L GGDLRS+Q +LGHS+L TT IY +++S + + + + P Sbjct: 254 HTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLHMDSATLRDAHRRFSP 306 >gi|110597667|ref|ZP_01385952.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM 13031] gi|110340787|gb|EAT59264.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM 13031] Length = 86 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHS+ATHLL G D+R+IQ ++GH +STT IYT+V +K Sbjct: 24 CHTFRHSYATHLLEAGYDIRTIQELMGHKDVSTTMIYTHVLNK 66 >gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREV 281 >gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium] Length = 157 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] Length = 302 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291 >gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158 >gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] Length = 292 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFAT +L++ L S++ +LGH L+TT++YT+ +++ +IY HP Sbjct: 236 TPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQLKQIYKSAHP 290 >gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium] Length = 163 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL G D+R +Q +LGH ++TT IYT+V Sbjct: 120 NVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMIYTHV 162 >gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3] gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3] Length = 302 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291 >gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREV 281 >gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] Length = 294 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 292 >gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 302 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP Sbjct: 238 SPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHP 291 >gi|89147518|gb|ABD62619.1| integrase [uncultured bacterium] Length = 163 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFAT LL G D+R++Q +LGH+ +STT IYT+V Sbjct: 120 PVSVHTLRHSFATRLLHAGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHS+A+ LL+ G + + +LGHS ++TTQIYT + S + Y++ HP Sbjct: 215 LKVTPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272 >gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] Length = 293 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L ++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEELKKVYKQAHP 291 >gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] Length = 294 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 292 >gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium] Length = 163 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 30/39 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH FATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 124 HTFRHCFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 268 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHSFAT++L G + + +LGH +STTQIYT +++ ++ Y + HP Sbjct: 211 ATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLKLKNYLKAHP 266 >gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666] gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 36/49 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH +L TT +YT+V ++ + E+ Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATEVLREV 281 >gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56'] Length = 316 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G D+R+IQ++LGH + TT IYT++ Sbjct: 262 TCHILRHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHI 302 >gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter algicola DG893] gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter algicola DG893] Length = 330 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +HT RHSFAT LL +G D+R+IQ +LGH+ + TT+IYT+V K Sbjct: 275 SHTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317 >gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380] gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380] Length = 333 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K Sbjct: 277 HTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAK 318 >gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae] Length = 315 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+ ++Q +LGH ++T QIY +V Sbjct: 267 TCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQIYAHV 307 >gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium] Length = 163 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] Length = 297 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 241 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHP 295 >gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266] gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266] Length = 338 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TT IYT+V Sbjct: 283 TCHTFRHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHV 323 >gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism] Length = 299 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + TLRHSFATHLL+ G D+R+IQ +LGH L TT+IYT+V Sbjct: 259 SVRTLRHSFATHLLATGTDIRTIQLLLGHRNLKTTRIYTHV 299 >gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51] gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 290 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT +L+NG D+ S+Q++LGH TTQIY +R ++Y Q Sbjct: 237 HVLRHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQSTDERKQQVYKQ 286 >gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645] gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645] Length = 354 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT RHSFATHLL++G D+R++Q +LGH + TT IYT+V Sbjct: 293 TSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMIYTHV 333 >gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485] gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485] Length = 299 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/44 (56%), Positives = 32/44 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFA H L NG DLR +Q LGH+ ++TTQIYT++ + Sbjct: 242 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEE 285 >gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5] Length = 298 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +R +Q +LGH + TT+IYT+++S + ++ P Sbjct: 243 SPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDHLRRTLEEHLP 297 >gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 318 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++H LRH+FAT LL G DLR++Q +LGHS + TT +YT+V + + D+ Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTDREKEKAMDK 308 >gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 287 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 36/50 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHS AT ++ NG D+R +Q +LGH+ ++TT++YT+V ++ EIY + Sbjct: 230 HLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHVEKSKLREIYKK 279 >gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 352 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +S T H+LRH+FA+HL + L++IQ +LGH L+TT IY + + + ++ DQ HP Sbjct: 270 LSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHKLLDQHHP 327 >gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] Length = 302 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/39 (61%), Positives = 30/39 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRHS+ATHL G +++ IQ +LGHS LSTTQIY+ Sbjct: 259 TPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYS 297 >gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] Length = 344 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 +AH LRH+ AT +L NG D+R++Q +LGH L+TTQIYT+V+S Sbjct: 271 SAHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDS 313 >gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFAT LL NG D+R+IQ +LGH +STT IYT+V Sbjct: 122 SHAFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|296330503|ref|ZP_06872982.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674712|ref|YP_003866384.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152400|gb|EFG93270.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412956|gb|ADM38075.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 77 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 35/54 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H LRHS+ATHL++NG L IQS+LGH + TT+IY ++ K E Y + Sbjct: 22 SIHPHQLRHSYATHLINNGAPLEVIQSLLGHEKSETTKIYAQLSGKLRHEFYSK 75 >gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12] gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12] Length = 152 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHS+ATHLL G DLRS+QS+LGH+ L+TT YT + Sbjct: 83 SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRL 125 >gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter smithii ATCC 35061] gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family [Methanobrevibacter smithii ATCC 35061] Length = 302 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/39 (61%), Positives = 30/39 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRHS+ATHL G +++ IQ +LGHS LSTTQIY+ Sbjct: 259 TPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYS 297 >gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHLFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 308 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ++LGHS ++ T+IYT+V + +I HP Sbjct: 246 TPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQKDILASKHP 300 >gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] Length = 297 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 40/60 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FAT +L+N D+ S++ +LGH L T++YT+ + + ++Y + HP ++K Sbjct: 237 SPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEHLKKVYSKAHPRSSRK 296 >gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11] Length = 303 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R+IQ ++GHS L TT IYT+V Sbjct: 263 SCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303 >gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8] gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8] Length = 261 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R+IQ +LGH +L TT Y +V Sbjct: 201 TCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTTMQYIHV 241 >gi|254504131|ref|ZP_05116282.1| site-specific recombinase, phage integrase family [Labrenzia alexandrii DFL-11] gi|222440202|gb|EEE46881.1| site-specific recombinase, phage integrase family [Labrenzia alexandrii DFL-11] Length = 171 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL D+R IQ +LGH++L+TT YT+V ++ Sbjct: 101 PATLHTLRHSFATHLLEANTDVRIIQVLLGHTKLTTTARYTHVATR 146 >gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15] gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15] Length = 449 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 TAHT RHS+ATHLL D+R+IQ+ LGH+ L TT IYT+ Sbjct: 394 TAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 433 >gi|89147630|gb|ABD62674.1| integrase [uncultured bacterium] Length = 163 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FA HLL +G D+R++Q +LGH ++TT IYT+V Sbjct: 123 CHTLRHGFAPHLLEDGYDMRTVQELLGHKDVTTTMIYTHV 162 >gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 326 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT + G D+ S+Q +LGHS +STTQIYT+V R+ E ++ +P Q Sbjct: 259 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNIQF 317 Query: 64 DKK 66 +KK Sbjct: 318 NKK 320 >gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC 824] Length = 323 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT + G D+ S+Q +LGHS +STTQIYT+V R+ E ++ +P Q Sbjct: 256 TPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNIQF 314 Query: 64 DKK 66 +KK Sbjct: 315 NKK 317 >gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas gingivalis W83] gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas gingivalis W83] Length = 400 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L++G DL S++ +LGH LSTT YT+++ +++ ++Y+ HP Sbjct: 242 SPHVLRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHP 295 >gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4] gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4] Length = 362 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/44 (52%), Positives = 34/44 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + TAH LRHSFAT L++ G D+ ++QS+LGH ++TTQ+Y +V Sbjct: 305 TITAHKLRHSFATALVAKGVDVLTVQSLLGHESVATTQVYAHVQ 348 >gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 280 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 33/42 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL +G D+R IQ +LGH++L+ T +Y V ++ Sbjct: 200 HTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALYAKVATR 241 >gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 372 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/40 (65%), Positives = 30/40 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G DLR IQ +LGH+ TT+IYT+V Sbjct: 318 PHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHV 357 >gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 323 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 37/49 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +AH LRH+ AT L G D+RSIQ++LGH ++TTQIYT+V+ ++ +I Sbjct: 265 SAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIRDI 313 >gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] Length = 296 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHS+ATHLL G DLRS+QS+LGH+ L+TT YT + Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRL 269 >gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 485 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 5/51 (9%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++H LRHSFATHLL +G +LR++Q ++GH + TTQ+Y + +M+ Y+ Sbjct: 423 SSHALRHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLH-----LMKTYE 468 >gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881] gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881] Length = 328 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL G D+R++Q +LGHS +STT+ Y +V Sbjct: 274 PHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLHV 313 >gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684] gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684] Length = 335 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RH FATHLL G D+R+IQ +LGH ++TT IYT+V +K Sbjct: 281 HTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTMIYTHVLNK 322 >gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium] Length = 337 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT L +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO] gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 286 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FATHLL G ++R +Q +LGHS LSTT +Y +V Sbjct: 231 PHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHV 270 >gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] Length = 298 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSF +HLL +LR++Q +LGH+ +++TQ+YT ++ + +YD P Sbjct: 243 HMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTALDFDHLSSVYDNAFP 295 >gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium] Length = 163 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+ ++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTSRHSFATHLLQAGRDIHTVQELLGHTDVKTTQIYTHV 162 >gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 298 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL +G L IQ +LGH+ + +T IY +V+ +++I Sbjct: 219 ATVHTLRHSFATHLLEDGYSLVYIQKLLGHADIKSTMIYLHVSPDSLLQI 268 >gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14] gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14] Length = 293 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ L S++ +LGH+ LSTT+IYT+ +++ IY HP Sbjct: 237 SPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQLKRIYSNAHP 291 >gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 318 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 37/52 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++H LRH+FAT LL G DLR++Q +LGHS + TT +YT+V ++ + D+ Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNREKEKAMDK 308 >gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter sulfurreducens PCA] gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens PCA] gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400] Length = 457 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 TAHT RHS+ATHLL D+R+IQ+ LGH+ L TT IYT+ Sbjct: 402 TAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 441 >gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL + D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|223369840|gb|ACM88789.1| integrase [uncultured bacterium] Length = 163 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G +R++Q +LGH+ + TT IYT+V Sbjct: 122 SVHTLRHSFATHLLESGYGIRTVQELLGHADVKTTMIYTHV 162 >gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T] gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T] Length = 291 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRH FATHLL D+R IQ++LGH +L TT IYT V + + E+ Sbjct: 233 SMHTLRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVATDLLREV 281 >gi|94442274|dbj|BAE93636.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 297 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H +RH+ A+HLL G DLR++Q LGH + TT+ Y + + + + ++YD++HP Sbjct: 244 HVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFD-QELRDVYDRSHP 295 >gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M] gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M] gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M] gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M] Length = 291 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH +L TT +YT V + + ++ Sbjct: 233 SMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVATDLLRKV 281 >gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1] gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1] Length = 278 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHS+AT LL++ + + +LGHS ++TTQIYT + S + Y++ HP Sbjct: 215 LKVTPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272 >gi|30908752|gb|AAP37608.1| IntI [uncultured bacterium] Length = 161 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHS ATHLL +G D+R+I +LGH +STT IYT+V Sbjct: 122 PHTLRHSXATHLLQDGYDIRTIHDLLGHKEISTTMIYTHV 161 >gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea] Length = 313 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/39 (64%), Positives = 31/39 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT L +G D+R++Q +LGHS +STT IYT Sbjct: 275 TPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium] Length = 163 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFAT LL G D+R++Q +LGH + TT IYT+V Sbjct: 121 VTCHTFRHSFATQLLEAGYDIRTVQELLGHQDVKTTMIYTHV 162 >gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEASHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402] Length = 426 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 30/40 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL D+R+IQ +LGHS + TT +YT+V Sbjct: 372 CHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHV 411 >gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium] Length = 162 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] Length = 298 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +R +Q +LGH + TT+IYT++ + + ++ P Sbjct: 243 SPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297 >gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 306 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/38 (63%), Positives = 28/38 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RHS ATHLLS G +++IQ ILGH +STTQIYT Sbjct: 241 PHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYT 278 >gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 103 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 30/43 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 47 PVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDVKTTMIYTHV 89 >gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium] Length = 238 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 197 TPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTHV 237 >gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 279 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/50 (56%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL +G D IQ +LGHS L TT IY +V + M I Sbjct: 220 VSVHTLRHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHVGNLDGMNI 269 >gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] Length = 306 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+FAT LL D+R IQ +LGHS ++ TQIYT+V + +I HP Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQKDILINKHP 300 >gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016] gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016] Length = 296 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/46 (54%), Positives = 33/46 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + ++ Sbjct: 229 TPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTQLTQLKL 274 >gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)] Length = 290 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TT YT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTTNYTHV 282 >gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08] gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08] Length = 280 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 37/50 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T+H RHSFA+HLL +G D++ IQ++LGH +T+IY +V++K ++ I Sbjct: 221 VTSHAFRHSFASHLLEDGCDIKYIQALLGHLDPKSTEIYLHVSNKTLLGI 270 >gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA L NGGD+ +++SILGH R+ TT++Y + S+ M +++ P Sbjct: 250 VQCSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSRDMQIQHEKFSP 307 >gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae] Length = 317 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/38 (65%), Positives = 31/38 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 312 >gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 347 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 3/54 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54 T H LRH+FAT L + G D+ +IQ +LGH ++TTQ+Y ++ KR +E++D Sbjct: 291 TPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHIGDREKKRAIELFD 344 >gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V+S R+ E Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316 >gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium] Length = 158 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 31/39 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY Sbjct: 117 ATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155 >gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1 str. Okra] gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V+S R+ E Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316 >gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F str. Langeland] gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V+S R+ E Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316 >gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. ATCC 19397] gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. Hall] gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V+S R+ E Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316 >gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + + +I HP Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDILISKHP 300 >gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 308 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHS AT LL G DLR++Q LGHS + TT+ YT+ + + + ++YD+ HP Sbjct: 245 HVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE-LRDVYDRCHP 296 >gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3 str. Loch Maree] gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V+S R+ E Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316 >gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium] Length = 163 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G ++R +Q +LGH TT IYT+V Sbjct: 121 ATVHTLRHSFATHLLMAGTNIREVQELLGHKSAETTMIYTHV 162 >gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] Length = 160 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH + T LL +G DLR++Q +L H LSTTQIYT V +R + +P Sbjct: 101 TPHGLRHWYGTTLLDDGADLRTVQELLRHRSLSTTQIYTRVTDERRAAAVGRLNP 155 >gi|89147388|gb|ABD62554.1| integrase [uncultured bacterium] Length = 163 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 30/39 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH FATHLL+ G D+R+IQ +LGH L TT IYT+V Sbjct: 124 HCLRHRFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 162 >gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 279 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 3/48 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKR 48 T H+LRHS+ATHL+ +G D+R +Q +LGH + TT IY T+++ KR Sbjct: 224 TVHSLRHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHITDIDKKR 271 >gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] Length = 298 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 T + LR+SFA H+L NG D++++Q ++GH +S T Q Y + S + +YD+THP Sbjct: 242 TPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSSTKL-VYDKTHP 296 >gi|89147508|gb|ABD62614.1| integrase [uncultured bacterium] Length = 163 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 30/40 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL G ++R +Q +LGH + TT IYT+V Sbjct: 123 VHTLRHSFATHLLLQGVNIREVQELLGHKSVETTMIYTHV 162 >gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus C3-41] gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 320 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 41/60 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+ AT + G D+RS+Q ILGHS ++TTQIYT++ +++ ++ + ++ Q+ Sbjct: 260 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLENNPFNMVQE 319 >gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437] Length = 330 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRH+ AT LLSNG +LR +Q ILGHS + TTQIYT+V Sbjct: 274 SPHKLRHTLATLLLSNGENLRVVQEILGHSSIQTTQIYTHV 314 >gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1] gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1] Length = 334 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/39 (61%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT LL G D+R+IQ +LGH+ + TT+IYT+V Sbjct: 282 HTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHV 320 >gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium] Length = 163 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT+RHS+ATHLL NG ++R +Q ++GH + TT+IYT+V Sbjct: 123 CHTMRHSYATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162 >gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] Length = 326 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + +GG D+RS+Q ILGH +STTQIYT+V+S R+ E Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLRE 316 >gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 282 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHL+ G + R+IQ++LGH +T++Y +V++K +M I Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSLMGI 269 >gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium] Length = 164 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%) Query: 2 STTAHTLR-HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LR HSFATHLL +G D+R++Q LG+S + TTQIYT+V Sbjct: 120 PATPHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163 >gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217] gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217] Length = 175 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 32/44 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHS ATHLL +G D+R IQ +LGHS LSTT YT V + Sbjct: 111 VSVHTLRHSSATHLLESGVDIRVIQVLLGHSNLSTTARYTQVAT 154 >gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 279 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 35/49 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH++ATHL+ G D+R I+ +LGHS + TT IYT+V K + I Sbjct: 224 TLHSLRHAYATHLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQKTLENI 272 >gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] Length = 293 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L+N + S++ +LGH LSTT+IYT+ +++ Y HP Sbjct: 237 TPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYYSAHP 291 >gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 145 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRHSFATHLL NG DLR IQ +LGH + TT+ T+V+ + Sbjct: 84 VSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTTERCTHVSRR 128 >gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHL+ G +++++Q +LGH ++TT+IY ++ + + + HP Sbjct: 243 SPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHP 297 >gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 306 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 31/44 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRH+FA H L+ G LR +Q +LGH +STTQ+Y V ++ Sbjct: 240 TPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQ 283 >gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] Length = 368 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ Sbjct: 312 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352 >gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ Sbjct: 312 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 352 >gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 308 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ Sbjct: 252 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 292 >gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99] gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99] Length = 506 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHS+ATHLL G DLRS+Q++LGH+ L+TT YT + Sbjct: 73 SISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYTRL 115 >gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium] Length = 291 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL D+R IQ +LGH +L TT +Y V ++ + E+ Sbjct: 235 HTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATEVLREV 281 >gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 288 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T LR SFA H+L NG D+RS+Q ILG+ + + + ++ ++ E+Y ++HP Sbjct: 229 FDITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQGDLISLISKSKIKEVYKRSHP 286 >gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 297 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRH FA+HLL G DLR+IQ +LGH++L T +Y +++ K + + Sbjct: 224 VSPHTLRHCFASHLLEAGTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAV 273 >gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 277 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/44 (54%), Positives = 30/44 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVAT 275 >gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046] Length = 313 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 37/49 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ AT + +G D+R++Q ILGHS ++TTQIYT++ +++ E+ Sbjct: 256 TPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQIQEV 304 >gi|30908736|gb|AAP37600.1| IntI [uncultured bacterium] Length = 160 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/38 (60%), Positives = 30/38 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 + HTLRHSFATHLL +G D+R++Q +LGHS + TT I Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMI 157 >gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium] Length = 163 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT+RHS+ATHLL NG ++R +Q ++GH + TT+IYT+V Sbjct: 123 CHTMRHSYATHLLENGINIRMVQELMGHKDVKTTEIYTHV 162 >gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] Length = 383 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ Sbjct: 327 HMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSN 367 >gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 340 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSIL-GHSRLSTTQIYTNV 44 T HTLRHSFAT LL G D+R++Q +L GHS +STT IYT+V Sbjct: 283 TPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMIYTHV 324 >gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHL+ G + R+IQ++LGH +T++Y +V++K +M I Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSIMGI 269 >gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 383 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S Sbjct: 326 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 367 >gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 352 >gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f] gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f] Length = 368 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 352 >gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] Length = 368 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSS 352 >gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 407 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AHTLRHSFAT +L+ G + SI+ +LGHS L TT YT+ + +++ ++Y HP Sbjct: 250 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHP 302 >gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 355 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 37/51 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ AT + G D+RS+Q ILGHS ++TTQIYT++ +++ ++ + Sbjct: 295 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLE 345 >gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 290 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217] gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217] Length = 296 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+Q +LGH+ L+TT YT + + Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271 >gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] Length = 413 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AHTLRHSFAT +L+ G + SI+ +LGHS L TT YT+ + +++ ++Y HP Sbjct: 256 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHP 308 >gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13] Length = 280 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 35/51 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+ATH+++NG L IQS+LGH + TT+IY ++ K ++Y + Sbjct: 228 PHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRKDLYSK 278 >gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFA HLL +G DL ++QS++GH + TT+IY + Sbjct: 222 TVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQM 262 >gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] Length = 290 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] Length = 403 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%), Gaps = 1/54 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AHTLRHSFAT +L+ G + SI+ +LGHS L TT YT+ + +++ ++Y HP Sbjct: 246 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHP 298 >gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 270 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFA+ LL+ + + +LGHS ++TTQIYT + S + Y+ HP Sbjct: 206 LKVSPHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNMAHP 263 >gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium] Length = 158 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 291 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI---YDQTHP 58 + HTLRH FATHLL D+R IQ +LGH +L TT +YT V + + E+ + HP Sbjct: 233 SMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVSPLEMLHP 290 >gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] Length = 290 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231] gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231] Length = 320 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G +R+IQ +LGH ++TT IYT+V Sbjct: 266 SCHTFRHSFATHLLEAGYGIRTIQELLGHRDVNTTMIYTHV 306 >gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium] Length = 158 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 117 ATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 290 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTNLNTNLLSLISKSKIKEVYNKFHP 288 >gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] Length = 290 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118] gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118] Length = 291 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 33/49 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH+RL TT Y V + + E+ Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHNRLDTTAQYVQVATDILREV 281 >gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] Length = 218 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HL+ G D+ ++Q++LGHS +TT +Y + + E Y P Sbjct: 162 TPHTLRHSFAAHLIRGGADIHAVQAMLGHSDSTTTHMYAAYSGNTVGETYRAALP 216 >gi|226326688|ref|ZP_03802206.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198] gi|225204909|gb|EEG87263.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198] Length = 49 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 33/42 (78%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 1 MESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHP 42 >gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 314 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 M T H+LRHS ATH + +LR +Q +LGH ++TTQIYT++++ + E++ Q H Sbjct: 256 MHITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLDNGFVQEMFHQHH 312 >gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297] gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297] Length = 317 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ TH+ NG +LR +Q LGH TT+IYT+V + + Y THP Sbjct: 256 SCHLLRHTTPTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRDLKRTYKSTHP 310 >gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ +L +I+ +LGH L+TT++YT+ + + ++Y+ HP Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNLAHP 292 >gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016] gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +R+ E +IT+ Sbjct: 295 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKSNPLNITE 354 Query: 63 K 63 K Sbjct: 355 K 355 >gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2] gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 305 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+FAT LL NG D+R ++ +LGH+ + TT IYT+VN + E Sbjct: 247 SCHKLRHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKE 294 >gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM 555] gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555] Length = 328 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +R+ E +IT+ Sbjct: 268 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKSNPLNITE 327 Query: 63 K 63 K Sbjct: 328 K 328 >gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 288 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T LR SFA HLL NG D+RS+Q +LG+ +++ ++ + ++ ++ E+Y ++HP Sbjct: 232 TPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNELISLISKSKIKEVYKKSHP 286 >gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 294 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA HL+ G D+ ++Q++LGHS +T Q+Y + + E Y P Sbjct: 238 TPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYAAYSGNTVRENYRAALP 292 >gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1] gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1] Length = 309 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRH+FATHLL +G D+R+IQ +LGH L+TT Y V Sbjct: 238 TPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKV 278 >gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74] Length = 390 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 24/44 (54%), Positives = 33/44 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+LRHSFATHLL +G D+R IQ +LGH + TT YT+V + ++ Sbjct: 337 HSLRHSFATHLLESGVDIRHIQELLGHESILTTMRYTHVTADKI 380 >gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] Length = 337 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T RHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 275 TPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] Length = 303 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/39 (64%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL NG +LRSIQ++LGH+ TT YT + Sbjct: 239 HSLRHSFATHLLENGVNLRSIQTLLGHASPVTTARYTRM 277 >gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 304 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 249 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 289 >gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 301 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 246 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 286 >gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222] gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222] Length = 160 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRH FATHLL G DLRS+Q++LGH+ L+TT YT + Sbjct: 93 ASPHSLRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRM 134 >gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + +I HP Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRDILVTKHP 300 >gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17] gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17] gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] Length = 342 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 40/64 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS A HLL G +L I+ ILGH + TT++Y +SK+ E ++T+ SI + Sbjct: 260 SPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKREALEKTYTSILPQ 319 Query: 64 DKKN 67 ++ N Sbjct: 320 EEDN 323 >gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] Length = 293 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L++ ++ S++ +LGH+ + TT++YT+ +++ +Y HP Sbjct: 237 TPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQLKRVYKNAHP 291 >gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185] gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185] Length = 296 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHS+ATHLL G DLRS+Q++LGH L+TT YT + Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRL 269 >gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41] gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K ++Y + Sbjct: 183 SIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDLYSK 236 >gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] Length = 290 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HTLRHSFATHL+ N +++ +Q +LGH+ LSTT IY +V K + Sbjct: 238 HTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEKFD 283 >gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 291 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 33/49 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH++L T +Y V + + E+ Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281 >gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43] Length = 739 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+FA H L G DLR +Q +LGH+ L+TT YT ++ R + Sbjct: 555 STHWLRHTFANHGLDAGADLRDMQELLGHASLATTTRYTKADAARQFQ 602 >gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] Length = 283 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHL+ G + ++IQ++LGH +T++Y +V++K +M I Sbjct: 221 ATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKSLMGI 270 >gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] Length = 280 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 34/52 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S H LRHS+ATH+++NG L IQS+LGH + TT+IY ++ K + Y Sbjct: 225 SIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFY 276 >gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM 11551] gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM 11551] Length = 311 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 36/57 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA L NG D+R++Q ++GH+ + TTQ+Y ++ + Q PS+ Sbjct: 253 TGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLADDDVKTKARQFGPSL 309 >gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29] Length = 279 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 224 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264 >gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 279 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T HTLRHS+ATHLL NG D +++ ILGHS ++TT IY Sbjct: 218 TATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIY 257 >gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195] gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195] gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678] Length = 296 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHS+ATHLL G DLRS+Q++LGH L+TT YT + Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRL 269 >gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA] gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA] Length = 285 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHSFA+HL +G D++ IQ++LGH +T+IY +V++K ++ I Sbjct: 226 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 275 >gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 280 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHSFA+HL +G D++ IQ++LGH +T+IY +V++K ++ I Sbjct: 221 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTLLGI 270 >gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16] gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16] Length = 342 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 35/43 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 ++H LRH+ AT +L NG D+R++Q +LGH L+TTQIYT+V++ Sbjct: 273 SSHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDN 315 >gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] Length = 398 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FAT +L+NG L +++ +LGH ++TT +YT+ + + ++Y+ HP ++K Sbjct: 243 HVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAELQQMYN-AHPRASKK 299 >gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] Length = 296 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHS+ATHLL G DLRS+Q +LGH+ L+TT YT++ Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHL 269 >gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9] gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9] Length = 295 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + Sbjct: 229 SPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 269 >gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49] Length = 770 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+FA H L G D+R +Q +LGH+ L TT +YT ++ R + Sbjct: 592 STHWLRHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADAVRQFQ 639 >gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421] Length = 289 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T TLRHSFA HLL G DL +++ +LGH+ L+TT IYT + Sbjct: 230 TPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYTRL 270 >gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] Length = 306 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + +I HP Sbjct: 246 TPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILTTKHP 300 >gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4] gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4] Length = 452 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 24/40 (60%), Positives = 29/40 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+H RHSFATHLL D+R IQ +LGH+ L TT IYT+ Sbjct: 397 TSHIFRHSFATHLLQANYDIRVIQKLLGHASLKTTMIYTH 436 >gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] Length = 295 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + Sbjct: 229 SPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 269 >gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto BEST195] Length = 329 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 35/48 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H+LRH+FA + L NG D+RS+Q I+GH+ L++T+IY + ++E Y Sbjct: 271 HSLRHTFAINYLRNGSDIRSLQKIMGHADLASTEIYLDYVDDIVIEQY 318 >gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] Length = 288 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+ RH+F THL NG DL +IQ+ LGH L++T IY ++ + M Sbjct: 227 TCHSFRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNSM 272 >gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum] gi|1098132|prf||2115270D integrase Length = 259 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+ SI+++LGH + TT IY + Sbjct: 197 SVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQI 237 >gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] Length = 295 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + Sbjct: 229 SPHSLRHGFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 269 >gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429] gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429] Length = 282 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHS+ATHL+ G +++ +Q +LGH+ LSTT IY +V Sbjct: 231 PHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHV 270 >gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] Length = 297 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T T+R+SFA HL+ NG D++ IQ ILG++ + Q Y V+ +++ Y + HP Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHP 295 >gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] Length = 297 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T T+R+SFA HL+ NG D++ IQ ILG++ + Q Y V+ +++ Y + HP Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHP 295 >gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHL+ G + +IQ++LGH +T++Y +V++K +M I Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275 >gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01] gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01] Length = 304 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 35/48 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH++AT L+ NG +L +++ +LGH ++TTQIY + + +R+ E Sbjct: 249 TPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHASRERLRE 296 >gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHL+ G + +IQ++LGH +T++Y +V++K +M I Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275 >gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita] gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita] gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3] Length = 297 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH LRH F T LL G DLR++Q ++ H L++T+IYT V +R E ++ P Sbjct: 211 SAHCLRHWFGTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQRRAEGIERLDP 265 >gi|220683971|gb|ACL80793.1| putative transposase [Vibrio tasmaniensis] Length = 506 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+ RH FATHLL G DLRS+Q++LGH+ L+TT YT + Sbjct: 89 ASPHSPRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRI 130 >gi|284931854|gb|ADC31721.1| truncated tyrosine recombinase IntI2 [Escherichia coli] gi|284931857|gb|ADC31723.1| tyrosine recombinase IntI2 [Escherichia coli] gi|284931868|gb|ADC31728.1| truncated tyrosine recombinase IntI2 [Escherichia coli] Length = 58 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/37 (62%), Positives = 30/37 (81%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 1 FRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 37 >gi|225374497|ref|ZP_03751718.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM 16841] gi|225213735|gb|EEG96089.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM 16841] Length = 106 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K ++ I Sbjct: 47 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTLLGI 96 >gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855] gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855] Length = 451 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH L +G D+R+IQ +L H +L TT Y +V Sbjct: 391 TCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTTMQYVHV 431 >gi|223369826|gb|ACM88782.1| integrase [uncultured bacterium] Length = 163 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFA HLL++G ++R+IQ +L H L TT IYT+V Sbjct: 121 ATVHTLRHSFARHLLAHGTEIRTIQLLLEHRSLQTTMIYTHV 162 >gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 298 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T H LRHS ATHLL NG ++ +Q LGH+RL+TT +Y +V Sbjct: 236 SITIHDLRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHV 278 >gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila LSv54] gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea psychrophila LSv54] Length = 345 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHS+ATHLL G L +Q +LGH + TT+IYT++ K + ++ Sbjct: 284 VTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEIYTHLMKKNVHDV 333 >gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2] Length = 337 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 391 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T HT RH+FAT LL+ G DL ++ +LGHS++ TQIY + ++R E Sbjct: 332 SVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRKDE 381 >gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter ruber DSM 13855] gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation [Salinibacter ruber DSM 13855] Length = 191 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRH+FAT L + G +R +Q LGHS LSTT IYT+V Sbjct: 138 VSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTTMIYTHV 179 >gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium] Length = 163 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 30/40 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FATHLL G ++R +Q ++GH + TT IYT+V Sbjct: 123 CHTLRHAFATHLLEAGHNIRVVQELMGHKDVETTMIYTHV 162 >gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2] gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1] gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113] gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401] gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486] gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196] gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076] gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508] gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024] gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206] gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045] gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042] gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115] gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359] gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W] gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2] gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1] gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196] gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113] gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076] gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401] gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486] gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508] gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206] gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045] gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042] gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115] gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359] gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W] gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W] gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11] gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252] gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489] Length = 337 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 293 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 34/50 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT+++ G DL ++ ILGH+ L+TT IYT + K MME ++ Sbjct: 241 HVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKTMMEALEK 290 >gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82] Length = 337 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] Length = 328 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HT+RH+FAT L+NG D+ ++Q++LGH +TTQIY + ++ E Sbjct: 273 SPHTMRHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEEKKRE 320 >gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 337 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 381 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH LRH + T L+++G DLR+ Q++L HS L++T IYT V R +E D+ Sbjct: 234 TAHRLRHWYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDR 285 >gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3] Length = 203 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 32/46 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRHS+ATHL G D++ IQ +LGH TT+IYT+V+ K Sbjct: 146 EVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTKTTEIYTHVSRK 191 >gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A] gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A] Length = 337 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9] gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9] Length = 180 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + Sbjct: 114 SPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 154 >gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520] Length = 337 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 264 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 280 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K ++ I Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTLLGI 270 >gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 299 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH LSTT Y + + ++ Sbjct: 228 TPHSLRHAFACHLLEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKV 273 >gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357] Length = 321 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 M H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 252 MGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 293 >gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] Length = 283 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHS+ATHL+ G +++ +Q +LGH+ LSTT IY +V Sbjct: 232 PHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHV 271 >gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 280 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K ++ I Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTLLGI 270 >gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 393 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 34/48 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ +SKR+ E+ Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREV 348 >gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 292 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 222 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 267 >gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] Length = 294 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 231 PHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 270 >gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C] gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C] Length = 386 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRHS+A+ L+ G + ++ +LGHS +STTQ+Y +V+ KR+ E Sbjct: 329 TPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRKRLEE 376 >gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88] gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88] Length = 328 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+++++ E Sbjct: 267 TPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLRE 315 >gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] Length = 306 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + I HP Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHP 300 >gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 306 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + I HP Sbjct: 246 TPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHP 300 >gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14] gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14] Length = 365 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FA LL G D+ +I ++LGH ++S+TQ Y ++SK+M+E Sbjct: 312 TFHCFRHTFAMQLLDKGVDIYTIAALLGHKQVSSTQNYAKMSSKKMIE 359 >gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 233 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 278 >gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 354 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 34/48 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ +SKR+ E+ Sbjct: 262 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREV 309 >gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] Length = 357 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---------NSKRMMEIY- 53 + H LRH+ AT + NG D+R ++ +LGH L+TTQIYT+V NS +M+I Sbjct: 282 SVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKN 341 Query: 54 DQTHPSITQKDKKN 67 D P + Q + KN Sbjct: 342 DLPEPDLKQNEDKN 355 >gi|54302869|ref|YP_132862.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9] gi|46916293|emb|CAG23062.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9] Length = 141 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHS+ATHLL G DLRS+Q +LGH+ L++T YT++ Sbjct: 72 SISPHNLRHSYATHLLEQGLDLRSVQHLLGHNSLNSTARYTHL 114 >gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum] gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum] Length = 387 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 33/45 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRHSFAT LL +G D+R++Q +LGHS +STT + + + R Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTALLQRLAAVR 319 >gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 33/43 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H+LRHS+ATHL+ G +LR IQ ILGHS +TT IY++++ Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272 >gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 32/45 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S H +RH+ ATHLL++G DL ++Q+ILGH S TQIY +++ Sbjct: 275 SIYPHLIRHTMATHLLNSGADLGTVQAILGHEDASITQIYAQISN 319 >gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22] gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22] Length = 337 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 27/37 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFATH + NGG + ++Q ILGHSR+ T +Y Sbjct: 267 HALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYA 303 >gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 33/43 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H+LRHS+ATHL+ G +LR IQ ILGHS +TT IY++++ Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLS 272 >gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 33/52 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S T H LRHS AT LL+ G +L+ IQ ILGH ++TT IY + K + + Y Sbjct: 238 SITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEY 289 >gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400] gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400] Length = 291 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 33/49 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH++L T +Y V + + E+ Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281 >gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] Length = 290 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 37/55 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 234 TPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHP 288 >gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1] gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1] Length = 323 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHS A L+ +G D+R +Q +LGHS +STT+IYT+V Sbjct: 261 VTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTHV 302 >gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] Length = 251 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+F HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 181 TPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKV 226 >gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/37 (62%), Positives = 27/37 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRHSFATHLL G DL +IQ +LGH+ + TT IY Sbjct: 311 VHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTAIY 347 >gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 357 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---------NSKRMMEIY- 53 + H LRH+ AT + NG D+R ++ +LGH L+TTQIYT+V NS +M+I Sbjct: 282 SVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKN 341 Query: 54 DQTHPSITQKDKKN 67 D P + Q + KN Sbjct: 342 DLPEPDLKQDEDKN 355 >gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.] Length = 192 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51 +AHT HSFA+HLL D+R+IQ +LGHS + TT IYT+ V S+ + E Sbjct: 136 ASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVKSRTLKE 185 >gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 357 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 10/74 (13%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---------NSKRMMEIY- 53 + H LRH+ AT + NG D+R ++ +LGH L+TTQIYT+V NS +M+I Sbjct: 282 SVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIKN 341 Query: 54 DQTHPSITQKDKKN 67 D P + Q + KN Sbjct: 342 DLPEPDLKQNEDKN 355 >gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046] Length = 157 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 33/49 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K + Y Sbjct: 105 PHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDYY 153 >gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] Length = 343 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 39/58 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H +RH+ ATHLL++G D+ +++ +GHS + TT IY ++ +R +E+ + S++ Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEVLKKCEQSVS 323 >gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 282 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 7/59 (11%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-------RMMEI 52 + T H LRH+FAT +L G DL+S+ ILGH LSTT IY + N + R+MEI Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKEALQREYQRVMEI 280 >gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 308 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 238 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 283 >gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 309 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/37 (62%), Positives = 27/37 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HT RHSFATHLL G DL +IQ +LGH+ + TT IY Sbjct: 311 VHTARHSFATHLLEQGTDLHTIQELLGHNDIKTTAIY 347 >gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75] gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75] Length = 311 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] Length = 290 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +S T + LR SFA H+L NG DL+++Q +LG+ + + V+ +M E+Y++ HP Sbjct: 231 LSLTPNILRKSFAQHMLQNGADLKTVQEMLGYEANFGNNLLSLVSRSKMKEVYNKFHP 288 >gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615] gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615] Length = 324 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 268 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308 >gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509] Length = 317 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966] gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869] gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|307322494|ref|ZP_07601844.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891863|gb|EFN22699.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 90 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 32/47 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 19 TPHSLRHAFAVHLLEAGSDVRTIQLLLGHRSLATTAHYLRIATNKVC 65 >gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046] Length = 280 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 33/49 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K + Y Sbjct: 228 PHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYY 276 >gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171] gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171] gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22] gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22] Length = 312 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 255 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 >gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 770 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FA H L G D+R +QS+LGH+ L+TT Y ++ R + D Sbjct: 597 STHWLRHTFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDAARQYQTVD 647 >gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11] gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11] Length = 325 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 268 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308 >gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180] Length = 233 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 177 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 217 >gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15] Length = 327 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 AH LRH+FA+H L NGGD+ ++Q ILGHS +S T Y+++ Sbjct: 272 AAHVLRHTFASHFLMNGGDIVTLQKILGHSHISMTLRYSHL 312 >gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68] Length = 285 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 228 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 268 >gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82] Length = 323 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 268 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308 >gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357] Length = 374 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 318 AVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358 >gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 291 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHS+ATHLL G DLRS+Q +LGH+ L+ T YT++ Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHL 269 >gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] Length = 331 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/38 (57%), Positives = 27/38 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFA L +G DLR +Q +LGH +TTQ+Y Sbjct: 257 TPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294 >gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7] gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7] Length = 394 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGGD+ ++Q +LGH+ L T Y + + M E+ HP Sbjct: 287 HVLRHTFASHYMRNGGDIITLQRVLGHASLQMTMRYAHFSPGHMAEVV-HLHP 338 >gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6] gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6] Length = 282 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 7/59 (11%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-------RMMEI 52 + T H LRH+FAT +L G DL+S+ ILGH +STT IY + N + R+MEI Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHENISTTSIYLHKNKEALQREYQRVMEI 280 >gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 293 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ + S++ +LGH LSTT+IYT+ +++ Y HP Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHP 291 >gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302] gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302] Length = 293 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ + S++ +LGH LSTT+IYT+ +++ Y HP Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHP 291 >gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228] Length = 312 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 35/52 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA+ L D++ +Q +LGH+ LSTTQIYT+V+++ D+ Sbjct: 257 TPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKKSAIDE 308 >gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110] gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110] Length = 355 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 29/45 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL +G D+R+IQ +LGH + T + N R Sbjct: 283 TCHTFRHSFATHLLESGYDIRTIQELLGHKNVETYNDLYSCNQSR 327 >gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] Length = 203 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 33/43 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 TAHTLRHS+ATHLL +G ++ ++ +LGH+ + TT +Y V++ Sbjct: 145 TAHTLRHSYATHLLEDGLNIMCLKELLGHAHIETTIVYLQVSN 187 >gi|161522759|ref|YP_001585688.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160346312|gb|ABX19396.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 274 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T+ H LRH+FA H L G D+R +Q +L H+ L TT +YT ++ R + Sbjct: 96 TSTHWLRHTFANHGLDAGADIRDMQELLDHASLGTTTLYTKADATRQFQ 144 >gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] Length = 376 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 32/40 (80%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y +++ Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIS 353 >gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 231 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 TAHTLRH FAT +LR++Q++LGHS ++TT+ YT V+ + Sbjct: 178 TAHTLRHRFATRAYRGSRNLRAVQTLLGHSSVATTERYTAVDDDEI 223 >gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 191 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRH+FAT L G +R +Q LGHS LSTT IYT+V Sbjct: 138 VSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMIYTHV 179 >gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 374 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 312 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 350 >gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 376 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 368 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH LRHSF T++ ++R +Q LGHS ++TTQIYT++ E+ D+ Sbjct: 314 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEV 366 >gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 365 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH LRHSF T++ ++R +Q LGHS ++TTQIYT++ E+ D+ Sbjct: 311 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDEV 363 >gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510] gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510] Length = 376 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 290 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FAT LL +GG DL +++ +LGH+ ++TT IYT N + M Sbjct: 237 HKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQDM 281 >gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607 Query: 63 KDKK 66 +D K Sbjct: 608 RDLK 611 >gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607 Query: 63 KDKK 66 +D K Sbjct: 608 RDLK 611 >gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 337 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl] gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl] Length = 286 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFA H L NG DLR +Q LGH+ ++TTQ+Y ++ Sbjct: 241 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHL 281 >gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966] gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591] gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869] gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112] gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120] gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167] gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591] Length = 337 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] Length = 377 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA +L+N D+ ++ +LGHS L TTQIYT++ ++ E T PS+ Q Sbjct: 320 TFHCARHTFAVRMLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKRKEAM-TTLPSLFQ 377 >gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606] gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606] Length = 337 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYA 305 >gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H RH+F T ++ G + +Q +LGH L TT IY N +RM + + H +T Sbjct: 548 TSPHAFRHTFGTQSVAAGMAIEVLQQVLGHGSLQTTTIYVNAEQRRMRQESAKYHARLTA 607 Query: 63 K 63 + Sbjct: 608 R 608 >gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 376 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|222873502|gb|EEF10633.1| predicted protein [Populus trichocarpa] Length = 71 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 32/43 (74%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+ HP Sbjct: 1 MLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYESAHP 43 >gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 292 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHP 290 >gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22] gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22] Length = 376 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 292 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHP 290 >gi|297521334|ref|ZP_06939720.1| integrase [Escherichia coli OP50] Length = 111 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 43 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQD 88 >gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841] gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841] Length = 376 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ Sbjct: 314 HLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHI 352 >gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media] Length = 310 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/35 (65%), Positives = 29/35 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309 >gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHP 290 >gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 586 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FA H L G D+R +Q++LGH+ L+TT Y ++ R + D Sbjct: 510 STHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVD 560 >gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 381 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RHSFAT +L+ G DL + +LGHS + TTQIY + + +E Sbjct: 324 TYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKIVDSKKVE 371 >gi|206480014|ref|YP_002235525.1| putative integrase [Burkholderia cenocepacia J2315] gi|195945170|emb|CAR57801.1| putative integrase [Burkholderia cenocepacia J2315] Length = 604 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T+AH LRH+F T + G + +Q ILGH+ L+TT IY +R++E Sbjct: 556 TSAHALRHTFGTDATARGVPIDVVQQILGHASLATTSIYVKAQQQRVLE 604 >gi|87308618|ref|ZP_01090758.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Blastopirellula marina DSM 3645] gi|87288710|gb|EAQ80604.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Blastopirellula marina DSM 3645] Length = 67 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 28/42 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFATHL+ D+R++Q +L H TT IYT V Sbjct: 11 VTAHTFRHSFATHLIEVAYDIRTVQELLVHRDFRTTMIYTPV 52 >gi|189182967|ref|YP_001936752.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189183100|ref|YP_001936885.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189183215|ref|YP_001937000.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179738|dbj|BAG39518.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179871|dbj|BAG39651.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179986|dbj|BAG39766.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 128 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 + T H LR +FAT ++NG +LR+I +LGHSR+STT +IYT ++ +++ ++ +I Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNKVVNNI 92 Query: 61 TQKDKKN 67 D N Sbjct: 93 LTSDNAN 99 >gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] Length = 292 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHP 290 >gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 779 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FA H L G D+R +Q++LGH+ L+TT Y ++ R + D Sbjct: 597 STHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVD 647 >gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 304 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AHT RH+FA L NGG+L S+Q+I+GH+ LSTT+ Y ++ ++ + + + Q P Sbjct: 246 SAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHLLTEDIQKQHRQFSP 300 >gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRH+FA+ L DLR +Q +LGHS +STTQIYT Sbjct: 255 TPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYT 293 >gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402] gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 339 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+ + L NGG++R +Q ILGH +L+TT+IY +V S+ +M + + + + Sbjct: 263 NITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHV-SEDLMTLQQEDYSPLD 321 Query: 62 Q 62 Q Sbjct: 322 Q 322 >gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 304 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL S DL +Q LGH +STTQ+YT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQLEEALER 303 >gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 338 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH++A +L NG L +Q++LGH L+TT IYT V ++ + ++ Sbjct: 268 AHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIYTKVAAEGLKDV 315 >gi|193063096|ref|ZP_03044188.1| resolvase [Escherichia coli E22] gi|192931355|gb|EDV83957.1| resolvase [Escherichia coli E22] Length = 243 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 215 >gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix] gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix] Length = 322 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 29/39 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H +R SFAT LL NG DL ++Q ++GHS ++TTQIY Sbjct: 261 TLPHDMRRSFATQLLDNGTDLLTVQRLMGHSSVTTTQIY 299 >gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer] Length = 284 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/35 (65%), Positives = 29/35 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 250 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284 >gi|215408000|emb|CAS02327.1| integron integrase [uncultured bacterium] Length = 154 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 29/39 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 T HTLRHSFAT LL +G D+R++Q +LGHS + TT I Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 154 >gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa] Length = 317 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/35 (65%), Positives = 29/35 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309 >gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681] gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681] Length = 358 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/35 (65%), Positives = 27/35 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + H+LRHSFATHLL NG DLR IQ +LGH + TT Sbjct: 319 SIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTT 353 >gi|223587856|emb|CAX36643.1| integron intagrase IntI protein [Arthrobacter sp. JEK-2009] Length = 113 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/40 (60%), Positives = 30/40 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Y Sbjct: 74 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTIDY 113 >gi|330907861|gb|EGH36384.1| resolvase [Escherichia coli AA86] Length = 259 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7] gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7] Length = 326 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 3 TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + +N GGD+ +++ ILGH +TT+IYT++ S++M D + Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTHLGSEKMKNTMDVMEDLLK 323 Query: 62 QKD 64 +KD Sbjct: 324 KKD 326 >gi|253801000|ref|YP_003034001.1| site-specific recombinase [Escherichia coli Vir68] gi|253721177|gb|ACT33486.1| site-specific recombinase [Escherichia coli Vir68] Length = 268 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 33/49 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V + M Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDM 245 >gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 277 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HTLRH+FA HL G + IQ +LGH+ +++T+IYT + + + YDQ Sbjct: 220 FKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANINSTRIYTRLMNHARKKQYDQ 274 >gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 325 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 34/51 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH FAT S G+LR++Q LGH+ ++TTQ YT V+++ + + D Sbjct: 224 SMHKLRHRFATLGYSGTGNLRAVQEALGHASVATTQRYTAVSTREVRSVAD 274 >gi|193805068|gb|ACF22181.1| putative resolvase [Escherichia coli] Length = 260 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|168705853|ref|ZP_02738130.1| resolvase [Gemmata obscuriglobus UQM 2246] Length = 73 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 2 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 45 >gi|157149514|ref|YP_001451592.1| resolvase [Escherichia coli E24377A] gi|157076681|gb|ABV16390.1| resolvase [Escherichia coli E24377A] Length = 237 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 166 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 209 >gi|195940121|ref|ZP_03085503.1| resolvase [Escherichia coli O157:H7 str. EC4024] Length = 260 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007] Length = 336 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 29/37 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFATH + NGG++ ++Q ILGH++++ T +Y Sbjct: 269 HALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYA 305 >gi|146284649|ref|YP_001165602.1| phage integrase family protein [Enterobacter sp. 638] gi|145320782|gb|ABP62928.1| phage integrase family protein [Enterobacter sp. 638] Length = 257 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 311 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 35/52 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA+ L D++ +Q +LGH+ +STTQIYT+V+++ D+ Sbjct: 256 TPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVDTEEKKSAIDE 307 >gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 292 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 221 TPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 266 >gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri] Length = 299 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/34 (64%), Positives = 27/34 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37 T HTLRHSFATHLL +G D+R+ Q +LGHS + T Sbjct: 266 TPHTLRHSFATHLLESGQDIRTDQELLGHSDVKT 299 >gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3] Length = 321 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + + H LRH+FAT LL+NG L I+ +LGH + TT IY +++R+ Sbjct: 252 TVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRRV 299 >gi|300825416|ref|ZP_07105489.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522125|gb|EFK43194.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 260 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|227539443|ref|ZP_03969492.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|227240756|gb|EEI90771.1| integrase [Sphingobacterium spiritivorum ATCC 33300] Length = 416 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P + Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVAPKFKE 407 >gi|27383455|ref|NP_774985.1| resolvase [Citrobacter freundii] gi|216967835|ref|YP_002333343.1| ResD [Klebsiella pneumoniae] gi|27261308|gb|AAN87649.1| resolvase [Citrobacter freundii] gi|215398007|gb|ACJ65284.1| resD [Klebsiella pneumoniae] Length = 242 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSF HL+ +G L+ +Q+ GHSRL TT+ YT V Sbjct: 175 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 218 >gi|132267|sp|P18021|REDM_ECOLX RecName: Full=Resolvase; AltName: Full=Protein D gi|144169|gb|AAA23010.1| ORF [Plasmid pColBM-C1139] gi|147038|gb|AAA24255.1| D protein [Plasmid ColBM-Cl139] Length = 260 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|226200966|ref|YP_002756570.1| resolvase [Escherichia coli] gi|260763809|ref|YP_003237848.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368] gi|284000234|ref|YP_003377921.1| resolvase [Escherichia coli O26:H-] gi|219881595|gb|ACL51965.1| resolvase [Escherichia coli] gi|257757234|dbj|BAI28735.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368] gi|283445174|gb|ADB20518.1| resolvase [Escherichia coli O26:H-] gi|323157093|gb|EFZ43219.1| resolvase [Escherichia coli EPECa14] gi|325699393|gb|ADZ45124.1| resolvase [Escherichia coli] Length = 260 Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|315297106|gb|EFU56386.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] Length = 127 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 56 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 99 >gi|331675773|ref|ZP_08376491.1| resolvase (Protein D) [Escherichia coli H591] gi|331076547|gb|EGI47823.1| resolvase (Protein D) [Escherichia coli H591] Length = 259 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|331660306|ref|ZP_08361241.1| resolvase (Protein D) [Escherichia coli TA206] gi|331052573|gb|EGI24609.1| resolvase (Protein D) [Escherichia coli TA206] Length = 260 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|38638105|ref|NP_943215.1| resolvase [Erwinia amylovora] gi|37682003|gb|AAQ97890.1| ResD [Erwinia amylovora] gi|323700929|gb|ADY00082.1| resolvase [Escherichia coli] Length = 246 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSF HL+ +G L+ +Q+ GHSRL TT+ YT V Sbjct: 179 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 222 >gi|300824703|ref|ZP_07104809.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522793|gb|EFK43862.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 268 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 282 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K ++ I Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] Length = 282 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K ++ I Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|301027042|ref|ZP_07190421.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299879442|gb|EFI87653.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 147 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 76 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 119 >gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] Length = 328 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ S + Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEKNPLSGEK 322 Query: 63 KD 64 +D Sbjct: 323 QD 324 >gi|189402582|ref|ZP_02783408.2| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189354779|gb|EDU73198.1| resolvase [Escherichia coli O157:H7 str. EC4401] Length = 229 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|323159070|gb|EFZ45070.1| resolvase [Escherichia coli E128010] Length = 212 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 141 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 184 >gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 282 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K ++ I Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K ++ I Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|223369866|gb|ACM88801.1| integrase [uncultured bacterium] Length = 163 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTL HSFATHLL N D+R Q +LGH +S T YT+V Sbjct: 122 SCHTLPHSFATHLLENAYDIRPGQDLLGHKNVSPTLFYTHV 162 >gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815] gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815] gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815] gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815] gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815] gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRH+FATHLL G D+R IQ ++GH L+TT Y + Sbjct: 221 TPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRI 261 >gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 298 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRH+ AT LL G D+R +Q +LGH +STT+IYT+V Sbjct: 243 TPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHV 283 >gi|116006838|ref|YP_788021.1| resolvase (protein D) [Escherichia coli] gi|115500693|dbj|BAF33924.1| resolvase (protein D) [Escherichia coli] Length = 278 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|260600009|ref|YP_003212747.1| Resolvase [Cronobacter turicensis z3032] gi|260219356|emb|CBA34708.1| Resolvase [Cronobacter turicensis z3032] Length = 284 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 214 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 257 >gi|332346514|gb|AEE59847.1| putative site-specific recombinase [Escherichia coli UMNK88] Length = 229 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 322 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 36/53 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKV 314 >gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 322 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 36/53 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEKV 314 >gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] Length = 457 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+ AT + +G D+RS+QSILGH +STTQIYT+V+ + Sbjct: 399 TPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEE 443 >gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B] gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B] Length = 420 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|262042240|ref|ZP_06015407.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040411|gb|EEW41515.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 259 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|189184115|ref|YP_001937900.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180886|dbj|BAG40666.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 107 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 + T H LR +FAT ++NG +LR+I +LGHSR+STT +IYT ++ +++ ++ +I Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNKVVNNI 92 Query: 61 TQKDKKN 67 D N Sbjct: 93 LTGDNAN 99 >gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 317 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K ++ I Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|169344270|ref|ZP_02865251.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] gi|169297601|gb|EDS79702.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] Length = 109 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E Sbjct: 50 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 98 >gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 355 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 32/47 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D+ IQ +LGH+ L TT YT+V+ + + I Sbjct: 302 HGLRHSFATHLLEAGTDISFIQELLGHNDLKTTLRYTHVSQQTIKNI 348 >gi|150390613|ref|YP_001320662.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149950475|gb|ABR49003.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 321 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T+ H RH+FA + NGGD+ +Q ILGHS L + Y N+ + + + YD+ Sbjct: 242 LKTSVHLFRHTFAKKWILNGGDIFRLQKILGHSTLDIVREYVNMFGEDLQKDYDK 296 >gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM 13528] gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM 13528] Length = 328 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +++ E Sbjct: 268 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLRE 316 >gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7] Length = 282 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/39 (58%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FATHLL G DL ++ +LGH LSTTQ Y ++ Sbjct: 226 HTLRHAFATHLLEAGVDLATLAKLLGHGHLSTTQRYLHL 264 >gi|194447058|ref|YP_002039074.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194358502|gb|ACF56946.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 268 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPITPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 28/43 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFAT LL G ++ +Q +LGH+ LSTT IY ++ K Sbjct: 246 PHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDK 288 >gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 383 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH++AT LL+ G DL ++ +LGH+ ++TTQIY V K+ ++ Sbjct: 325 TFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVD 372 >gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] Length = 313 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH++AT L+ G +L +++ +LGH ++TTQIY + + +R+ E Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLRE 305 >gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8] gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8] Length = 313 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 34/48 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH++AT L+ G +L +++ +LGH ++TTQIY + + +R+ E Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLRE 305 >gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 329 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+ AT L G D+R++Q ILGH ++TT+IYT+VN K + ++ D Sbjct: 259 SVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVNKKALRKMVD 310 >gi|300825315|ref|ZP_07105396.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522214|gb|EFK43283.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 199 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 127 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 170 >gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 292 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ +Y +HP Sbjct: 237 NTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINIVYKNSHP 290 >gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 304 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 35/46 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + + Sbjct: 244 TPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEAL 289 >gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815] gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRH+FATHLL G D+R IQ ++GH L+TT Y + Sbjct: 221 TPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRI 261 >gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7] gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii str. 7] Length = 284 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT + G L +Q +LGH + TTQIYT++ ++ + EIY + Sbjct: 231 PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKK 281 >gi|294919371|ref|XP_002778525.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239887015|gb|EER10320.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 122 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94 >gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4] Length = 343 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 38/58 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H +RH+ ATHLL++G D+ +++ +GHS + TT IY ++ +R +E + S++ Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEALKKCEQSVS 323 >gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23] gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23] Length = 313 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH++AT L+ G L +++ +LGH ++TTQIY + + +R+ E Sbjct: 258 TPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHASRERLKE 305 >gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449] gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449] Length = 362 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 33/48 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGHS L+T++IYT+ + +R+ E+ Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEV 348 >gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44] gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44] Length = 313 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRH+FA+HL L +IQ +LGH R TT Y ++ + + + DQ HP Sbjct: 245 LRLTPHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHEDIRAMADQHHPRS 304 Query: 61 TQKDK 65 ++ ++ Sbjct: 305 SKYER 309 >gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 310 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AHT RH+FA L NGGD+ S+Q ILGHS++ T Y + + E ++ +P Sbjct: 249 SAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYVALWGTALKEQNEKYNP 303 >gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4] gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 272 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH FAT N ++R++Q +LGH ++TTQ+YT V+ + Sbjct: 219 TMHKLRHRFATRAYRNTRNIRAVQQLLGHESVATTQVYTAVDDDEL 264 >gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] Length = 398 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV ++ ++ H S+ + Sbjct: 335 VSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDATIISDLEKNHSSVHR 394 Query: 63 KDKK 66 K K Sbjct: 395 KKGK 398 >gi|312964753|ref|ZP_07778994.1| resolvase [Escherichia coli 2362-75] gi|312290602|gb|EFR18481.1| resolvase [Escherichia coli 2362-75] Length = 123 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94 >gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 421 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 31/47 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HT RH+FAT L+ G L S+ ++GH +STTQIY + S+++ Sbjct: 348 VTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKI 394 >gi|170576371|ref|XP_001893602.1| resolvase [Brugia malayi] gi|37496517|emb|CAD50592.1| resolvase [Cloning vector pUvBBAC] gi|158600296|gb|EDP37566.1| resolvase [Brugia malayi] gi|222834586|gb|EEE73049.1| predicted protein [Populus trichocarpa] gi|296775705|gb|ADH42981.1| Integrase [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] gi|312843168|gb|ADR02804.1| ResD [Shuttle vector pMycoFos] Length = 115 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87 >gi|292659084|gb|ADE34467.1| RedF [Cloning vector pTARa] Length = 170 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 99 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 142 >gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] Length = 330 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRH+ A HL +G D+ +IQS LGH L+TT IYT V Sbjct: 267 VSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEV 308 >gi|293420941|ref|ZP_06661375.1| hypothetical protein ECCG_04310 [Escherichia coli B088] gi|291324811|gb|EFE64227.1| hypothetical protein ECCG_04310 [Escherichia coli B088] Length = 115 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87 >gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR] gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR] Length = 282 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH FATHLL G D+ IQ +LGH+ + TT IY ++ R M++ + P Sbjct: 220 VSIHTLRHCFATHLLEAGTDILHIQQLLGHTSIHTTCIYLHL---RRMDVLNVKSP 272 >gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 160 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/46 (52%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHS+ATHLL G +LR IQ LGH TT +YT++ + Sbjct: 98 PATVHTLRHSWATHLLEAGINLRIIQDWLGHRSPRTTALYTHLTPQ 143 >gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3] gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron] gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3] Length = 279 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 31/41 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+ATHL+ +G D+R ++ +LGH + TT IYT++ Sbjct: 224 SVHTGRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHI 264 >gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 291 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T +R+SFA H++ NG DL S++ ++GH+ ++ TQ YT Y +THP Sbjct: 235 TPQAIRNSFAIHMIENGADLNSMKELMGHANITATQHYTKQRIGETFGTYHKTHP 289 >gi|323963811|gb|EGB59309.1| phage integrase [Escherichia coli M863] Length = 123 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 54 VTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 95 >gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 304 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|331668097|ref|ZP_08368949.1| resolvase (Protein D) [Escherichia coli TA271] gi|331064611|gb|EGI36518.1| resolvase (Protein D) [Escherichia coli TA271] Length = 120 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 49 VPVTPHTFRHSYAMHMLYVGIPLKVLQSLMGHKSISSTEVYTKV 92 >gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 326 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ A+ + G D+RS+Q ILGH ++TTQIYT++N K++ D S Sbjct: 263 TVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQLKNTVDNNPLSNID 322 Query: 63 KDKK 66 D K Sbjct: 323 FDNK 326 >gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 357 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS+ATHLL G D+ IQ +LGH+ + TT +Y V + ++ I Sbjct: 303 HGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKVGNAQLNAI 349 >gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T + LRH+FA L GGD S+Q ILGH+ L+ T+ Y ++ + EI+++ P Sbjct: 240 VKVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEIHEKASP 297 >gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 304 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella drancourtii LLAP12] gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella drancourtii LLAP12] Length = 166 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 29/51 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+FAT L G L S+Q LGH RL TT IY N ++E + Sbjct: 112 VTPHILRHTFATLALQKGISLASVQKALGHDRLETTAIYLNFTDAHVIEEF 162 >gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 293 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 35/50 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT+++ G D+ ++ ILGH+ L+TT IYT +SK M++ ++ Sbjct: 241 HVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSKTMLKALEK 290 >gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129] gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae] Length = 271 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H +RH +AT + DLR++Q +LGH+ ++TTQIYT V+ M Sbjct: 214 TPHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVSDTSM 259 >gi|262172770|ref|ZP_06040448.1| integrase [Vibrio mimicus MB-451] gi|261893846|gb|EEY39832.1| integrase [Vibrio mimicus MB-451] Length = 391 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 32/49 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H+ RH+FA LS G D+ S+ +LGHS L TT+IY ++ +R ME Sbjct: 326 VTFHSGRHTFAVIQLSRGVDIYSVSRLLGHSELKTTEIYADIIEQRRME 374 >gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] Length = 322 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 328 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 328 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ S Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEKNPLSGEN 322 Query: 63 KD 64 +D Sbjct: 323 QD 324 >gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor bescii DSM 6725] gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 328 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 328 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|227535878|ref|ZP_03965927.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227244366|gb|EEI94381.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 86 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HT RH+FAT ++ G L S+ ++GH +STTQIY + S+++ Sbjct: 13 VTFHTARHTFATMFVTEGVPLESLSKMMGHKNISTTQIYAKITSQKI 59 >gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS] gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS] gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS] gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 373 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+ THLL G D +Q LGHS STT +YT+V+S ++ Q Sbjct: 311 HALRHSYTTHLLEAGYDPLFVQQQLGHSYASTTSLYTSVSSDFKQKVIQQ 360 >gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] Length = 334 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+ AT + GG D+R +Q ILGH +STTQIYT+V+++ Sbjct: 274 TPHKLRHTAATLMFKYGGVDIRKLQLILGHESISTTQIYTHVDNE 318 >gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 328 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ S Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEKNPLSGEN 322 Query: 63 KD 64 +D Sbjct: 323 QD 324 >gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)] Length = 293 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 30/43 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATH L G D+R+ +LGH+ + T Q YT+V Sbjct: 240 TVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVKTEQNYTHV 282 >gi|296088960|emb|CBI38526.3| unnamed protein product [Vitis vinifera] Length = 158 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 87 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 130 >gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 325 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 327 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ] Length = 399 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q +LGH+ + TT IY +++ + E Sbjct: 346 HDLRHTFASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLRE 391 >gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella ruminicola 23] gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 409 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +AH RH FAT L+NG + S+ +LGH+ + TTQIY + +K++ Sbjct: 343 SAHCARHGFATMALTNGMPIESVSRVLGHTNIVTTQIYARITTKKL 388 >gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 301 Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S HTLRH FATHLL NG +L IQ +LGHS T IY ++ ++++ Sbjct: 231 SVHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQL 278 >gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 372 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSF THLL G D +Q LGHS STT +YT+V S + Q Sbjct: 310 HALRHSFTTHLLEAGYDPLFVQQQLGHSFASTTSLYTSVTSDFKQRVVQQ 359 >gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 306 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA + +GGD+ S+Q ILGHS + T Y N+ + E D+ +P Sbjct: 246 SPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNLFGSALKEQNDKFNP 300 >gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 281 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT+RHSFA H L G D+ S+Q +LGH+ ++T Q+Y ++ Sbjct: 239 TPHTMRHSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMYKDL 279 >gi|300773919|ref|ZP_07083788.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760090|gb|EFK56917.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 416 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405 >gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 290 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T + LR SFA H+L NG DL+++Q +LG+ + + V+ +M E+Y++ HP Sbjct: 234 TPNILRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSLVSRSKMKEVYNKFHP 288 >gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp. X514] gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513] gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514] gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513] Length = 330 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 >gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 330 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 >gi|290770043|gb|ADD61807.1| putative protein [uncultured organism] Length = 372 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT K Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAARQMCEVVDK----ITLK 368 Query: 64 DKK 66 KK Sbjct: 369 RKK 371 >gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1] gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1] gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] Length = 322 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] Length = 303 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/39 (58%), Positives = 30/39 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H++ HSFATH+L NG +LRSIQS+LGH+ TT YT + Sbjct: 239 HSMGHSFATHMLENGVNLRSIQSLLGHASPVTTARYTRM 277 >gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium] Length = 292 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/34 (64%), Positives = 28/34 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37 + HTLRHSFATHLL++G D+R+IQ +LGH L T Sbjct: 259 SVHTLRHSFATHLLADGTDIRTIQLLLGHRSLKT 292 >gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H +RH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7] gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7] gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7] gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7] Length = 330 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +++ Sbjct: 269 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEKL 315 >gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii NCIMB 8052] gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 329 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ AT + G D+RS+QSILGH+ +STTQIYT+V+ Sbjct: 271 TPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTTQIYTHVD 313 >gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 275 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 33/43 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T+AH LRHS A+H ++NG ++R +Q LGHS+L TT+ Y ++N Sbjct: 222 TSAHWLRHSHASHAINNGCNVRLLQESLGHSKLETTEKYLHIN 264 >gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 280 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/39 (58%), Positives = 30/39 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRH+FAT+LL +G DL ++ ++LGHSRL TT YT Sbjct: 230 TPHVLRHTFATNLLRDGVDLVTVAALLGHSRLDTTARYT 268 >gi|300778066|ref|ZP_07087924.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300503576|gb|EFK34716.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405 >gi|225008848|gb|ACN78946.1| IntIA [Vibrio metschnikovii] Length = 87 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/32 (62%), Positives = 26/32 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 S + HTLRHSFATHLL +G D+R++Q LGH+ Sbjct: 56 SVSCHTLRHSFATHLLESGADIRTVQEQLGHA 87 >gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 324 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+ AT LL++G L +Q +LGH+ STTQIY V+ +R Y+Q Sbjct: 271 HIFRHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVSPERKKLAYNQ 320 >gi|325104265|ref|YP_004273919.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973113|gb|ADY52097.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 416 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405 >gi|300777414|ref|ZP_07087272.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300502924|gb|EFK34064.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKF 405 >gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 330 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKE 318 >gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 328 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ AT + G D+RS+QSILGH +STTQIYT+V+ Sbjct: 270 TPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYTHVD 312 >gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 312 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/42 (54%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS+ATHLL G L+ IQ LGHS L TT +Y ++ Sbjct: 242 VSTHTLRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHL 283 >gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 327 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFATH + NGG + ++Q ILGH+R+ T Y Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHARIEQTMAYA 305 >gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21] gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21] Length = 360 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS+ATHLL G D+ IQ +LGH+ + TT +Y V + ++ I Sbjct: 306 HGLRHSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKVGNAQLNAI 352 >gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 287 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 31/38 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +TLRHSFA ++LS+G D++++Q +LGH+ +STT Y Sbjct: 239 TPYTLRHSFAINMLSSGMDIKTVQQLLGHTDISTTYTY 276 >gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 304 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA L GGDL S+Q I+GHS LSTT+ Y ++ ++ + + + Q P Sbjct: 246 SPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHLLTEDIQKKHRQFSP 300 >gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565] gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQ 55 H RH+FAT LLS G + S+ +LGH+ + TTQIY + +K+ MM++ D+ Sbjct: 343 HLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEQDMMQVADK 396 >gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter tengcongensis MB4] gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 353 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E Sbjct: 295 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLRE 343 >gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] Length = 359 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+ AT + G D+ +++ ILGH +STTQIYT++N +++ E Q P Q+ Sbjct: 273 SPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLREAV-QASPLARQR 331 >gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 348 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E Sbjct: 290 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLRE 338 >gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] Length = 293 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FAT LLS G +L I LGH+ + TTQIY + + ++ +Y Sbjct: 241 HRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARLPKQELITLY 288 >gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18] gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18] Length = 304 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565] gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565] Length = 341 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHS A HLL G +L I+ ILGH + TT+IY +SK+ E + + ++ Sbjct: 260 SPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALESAYVNMIPN 319 Query: 64 D 64 D Sbjct: 320 D 320 >gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 262 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 31/45 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + T H +RH+FA LS+GG R +Q ILGHS L TT+IY +++ Sbjct: 198 LKTHPHAVRHAFAVWFLSSGGSPRVLQHILGHSNLRTTEIYLDIS 242 >gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 273 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H++RH FA L NGGD +Q +LGH +++TT IYT ++S + Sbjct: 220 HSIRHYFAKSFLMNGGDATVLQQLLGHEQIATTTIYTKLSSNEL 263 >gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] Length = 339 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 4/66 (6%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP--SI 60 + H LRH+ AT + +GG D+R ++ ILGH+ LSTT+IYT++ S R ME ++ P S+ Sbjct: 264 SPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHI-SDRQMEKAAKSSPLSSV 322 Query: 61 TQKDKK 66 + K+ Sbjct: 323 APRKKR 328 >gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6] gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6] Length = 420 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|159898571|ref|YP_001544818.1| site-specific recombinase XerD-like protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891610|gb|ABX04690.1| Site-specific recombinase XerD-like [Herpetosiphon aurantiacus ATCC 23779] Length = 81 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/42 (59%), Positives = 30/42 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T HTLRHS+ATHLL G +LR IQ LGH TT +YT+V+ Sbjct: 24 TVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVS 65 >gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis NRRL B-59395] gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis NRRL B-59395] Length = 269 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRH FA+ D+R++Q +LGH+ ++TTQIYT Sbjct: 210 TTHTLRHRFASAAYRADRDIRAVQELLGHASVATTQIYT 248 >gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1] gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL G L+ IQ LGHS L TT +Y Sbjct: 286 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 321 >gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12] gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12] gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12] Length = 372 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT K Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----ITLK 368 Query: 64 DKK 66 KK Sbjct: 369 RKK 371 >gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149] gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149] Length = 153 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYD 54 T H RHS AT L+ G D+R +Q++LGH+ L TT+IY V++ +R +E D Sbjct: 93 TPHRFRHSAATLLIEEGIDIRIVQALLGHANLKTTKIYVRVSNHALRRALERVD 146 >gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] Length = 420 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 420 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574] gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574] Length = 435 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ ++ K+K Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSKEK 413 Query: 66 KN 67 KN Sbjct: 414 KN 415 >gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 118 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH+FAT +L+ G DL ++ +LGH+ + TTQIY + + +E Sbjct: 61 TFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKIVDSKKVE 108 >gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] Length = 420 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 564 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 500 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 559 Query: 62 QKDKK 66 + K Sbjct: 560 ARRAK 564 >gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1] gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1] gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 611 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 547 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 606 Query: 62 QKDKK 66 + K Sbjct: 607 ARRAK 611 >gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 31/44 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + T H LRH+ AT LL G D+R +Q +LGH + TTQIYT+V+ Sbjct: 233 TVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVS 276 >gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7] Length = 420 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RHS ATHLL G ++ +Q ILGH+ +STT IY ++ + E Sbjct: 246 PHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKRE 292 >gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum A str. ATCC 19397] gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 331 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFATH L++G L IQ ++GH STTQ+Y ++ + +M Y + Sbjct: 276 SIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEENVMHEYKK 329 >gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574] gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574] Length = 343 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 38/58 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+ RHS A HLL G +L I+ ILGH+ + TT+IY + +SK+ + ++ + +IT Sbjct: 261 SPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKRDALEKAYANIT 318 >gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4] gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4] Length = 414 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT LL++G +L+++Q +LGH R+STT +Y V Sbjct: 357 HALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEV 396 >gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 435 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ ++ K+K Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSKEK 413 Query: 66 KN 67 KN Sbjct: 414 KN 415 >gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815] gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815] Length = 418 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S H LRHS A+ +LSNG L+ I +L H L+TT IY+ ++ R++ I Sbjct: 359 SMGPHLLRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKIDFNRLIAI 409 >gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 356 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 297 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 337 >gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893] gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893] Length = 246 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 28/40 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFA HLL +G L+ + +LGH + +T++YTNV Sbjct: 192 CHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESTEVYTNV 231 >gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 336 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+A LL G L S+Q++LGH L TT +Y + + E D+ Sbjct: 225 PHQLRHSYAEQLLEKGAALTSVQALLGHESLQTTSVYLGIRPNALREAVDK 275 >gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 354 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 32/49 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+ AT LL +G DL ++Q +LGH+++STT YT V ++ E D Sbjct: 296 HLARHTHATLLLESGADLYTVQKLLGHTKISTTAQYTQVTDRKKKEAID 344 >gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1] gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL G L+ IQ LGHS L TT +Y Sbjct: 286 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 321 >gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5] gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5] Length = 420 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 401 >gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 348 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL G L+ IQ LGHS L TT +Y Sbjct: 286 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 321 >gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 343 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q ILGH+ L+ T Y +++ + + E Sbjct: 277 HVLRHTFASHFMMNGGNILTLQRILGHANLTMTMRYAHLSPEHLQE 322 >gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7] gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7] Length = 371 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 32/49 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGGD+ ++Q +LGH+ L T Y + + + E+ + Sbjct: 291 HVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFSPGHLAEVVN 339 >gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 322 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 322 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 35/52 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATSFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM 22836] Length = 366 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT+LL+ G L ++ LGHS + TQ+Y + SK++ Sbjct: 320 VTSHTARHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSKKV 366 >gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 350 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRHSFA +L G L +Q +LGHSRLSTT IY Sbjct: 280 TAAPHQLRHSFARRMLKTGAQLPEVQRMLGHSRLSTTGIY 319 >gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 337 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRH+FA+ L G D+ +IQ +LGH ++TTQ+Y ++ +R Sbjct: 283 VTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDER 328 >gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] Length = 321 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 36/58 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + NG D+ ++Q++LGHS L + Y N+ S+ +M+ + + P Sbjct: 259 VRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRDVMDAHKKFSP 316 >gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein [Bacteroides fragilis 3_1_12] Length = 537 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRH+ ATHL++ G L+ I +LGH L TT+IY V+ K + ++ D Sbjct: 482 HSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 530 >gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens str. 13] gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 450 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 439 >gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 413 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRH+ ATHL++ G L+ I +LGH L TT+IY V+ K + ++ D Sbjct: 358 HSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 406 >gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 282 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FATHLL G DL SI +LGH LSTT Y ++ ++ HPS Sbjct: 225 HGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHLARSKLT-----GHPS 273 >gi|238029078|ref|YP_002913303.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880655|gb|ACR32983.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 608 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H+LRH+F T +++G L +Q +LGH+ L TT +Y +R + H ++T Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFHAALTG 605 Query: 63 K 63 K Sbjct: 606 K 606 >gi|290243059|ref|YP_003494729.1| integrase family protein [Thioalkalivibrio sp. K90mix] gi|288945564|gb|ADC73262.1| integrase family protein [Thioalkalivibrio sp. K90mix] Length = 420 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT +L +G D+R ++ HS + TTQ YT R+M+ DQ Sbjct: 361 SAHALRHTAATDILESGVDMRVAADLMRHSDIRTTQGYTTPELSRLMDALDQ 412 >gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens ATCC 13124] gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 450 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 439 >gi|295097795|emb|CBK86885.1| Site-specific recombinase XerD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 258 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus RM3267] gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus RM3267] Length = 354 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 33/45 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q +LGH+ L+T++IYT+ +S+++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEVLGHASLNTSRIYTHFDSEKL 341 >gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2] gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 310 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 35/46 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + + Sbjct: 250 TPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEAL 295 >gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A] gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A] Length = 412 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P ITQ Sbjct: 348 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPFITQ 407 >gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1] gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1] Length = 436 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL G L+ IQ LGHS L TT +Y Sbjct: 374 HTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVY 409 >gi|189017167|ref|YP_001909484.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99] gi|188027104|emb|CAO94888.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99] Length = 299 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 31/46 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 ++ T HT RHSFA HLL +G ++IQ +LGH +T++YT V S Sbjct: 230 ITVTPHTFRHSFAMHLLMSGVPEKTIQGLLGHRYARSTEVYTRVFS 275 >gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 400 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 29/38 (76%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +LRHSFA H+L G D+R++Q++LGH + TT IY+ + Sbjct: 345 SLRHSFAVHMLEAGYDIRTVQTLLGHQDVKTTMIYSKL 382 >gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 286 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/36 (63%), Positives = 27/36 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL +G L+ IQ LGHS L TT +Y Sbjct: 224 HTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVY 259 >gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 317 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 32/48 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H RHS AT LL+NG D+ +Q +LGH +STTQIY +V+ +M Sbjct: 257 ATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVM 304 >gi|48477839|ref|YP_023545.1| site-specific integrase/recombinase [Picrophilus torridus DSM 9790] gi|48430487|gb|AAT43352.1| hypothetical site-specific integrase/recombinase [Picrophilus torridus DSM 9790] Length = 119 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH RH++A +LL +G D+ +I+ +LGH L TTQIYT + + +E Sbjct: 42 AHKFRHTYAKNLLRSGVDIETIRIMLGHEDLGTTQIYTVLGADEALE 88 >gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] Length = 361 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E Sbjct: 302 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRE 350 >gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633] gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633] Length = 615 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/34 (61%), Positives = 26/34 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37 + HTLRHSFATHLL +G D+R IQ++LGH T Sbjct: 238 SPHTLRHSFATHLLEDGTDIRIIQALLGHVEACT 271 >gi|307566170|ref|ZP_07628625.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345135|gb|EFN90517.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 213 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSF T L G + SI +LGHS +++T IY V K++ E D+ + K Sbjct: 137 TWHVARHSFGTLTLKAGIPMESIAKMLGHSSIASTHIYAQVTDKKISEYMDRLFAKQSAK 196 Query: 64 DKKN 67 K+N Sbjct: 197 KKEN 200 >gi|300837023|ref|YP_003754077.1| resolvase [Klebsiella pneumoniae] gi|299474827|gb|ADJ18651.1| resolvase [Klebsiella pneumoniae] Length = 259 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599] gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 290 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 TAH LRHSFA+ L+ +L IQ +LGHS L+ T +YT+ N Sbjct: 237 VTAHILRHSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTN 279 >gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] Length = 293 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHP 291 >gi|323161462|gb|EFZ47362.1| resolvase domain protein [Escherichia coli E128010] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 2 HTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 40 >gi|331646987|ref|ZP_08348086.1| resolvase (Protein D) [Escherichia coli M605] gi|331044304|gb|EGI16435.1| resolvase (Protein D) [Escherichia coli M605] Length = 260 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 232 >gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15] Length = 198 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFA HLL G L+ + +LGH + +T++YTNV Sbjct: 144 CHTFRHSFAVHLLLYGRPLKFVSQLLGHRSVESTEVYTNV 183 >gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9] gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9] gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 328 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 3/62 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ ++Q Sbjct: 269 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNKN--PLSQ 326 Query: 63 KD 64 K+ Sbjct: 327 KE 328 >gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602] gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T +Y Sbjct: 269 AVHVLRHTFATHFMMNGGNIITLQRILGHSTVQQTMVYA 307 >gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 309 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T ++LRH FAT+ L GG +Q ILGHS ++ T Y N+N + + E + P Sbjct: 234 LNLTVYSLRHIFATNFLRGGGSALELQRILGHSNMTMTTRYANLNREDLQEAHRHASP 291 >gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 293 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHP 291 >gi|295697898|ref|YP_003602555.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060010|gb|ADF64747.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 258 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum H10] gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10] Length = 330 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ AT + G D+R++Q ILGH +STT+IYT+++ +++ E D+ HP Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVDK-HP 319 >gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 291 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS+ATHLL G +LR IQ LGH+ +TT YT++ Sbjct: 230 ATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHL 271 >gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes DSM 1740] gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes] Length = 363 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E +T K Sbjct: 302 AHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFDRERLREAASLMD-DLTPKK 360 Query: 65 KKN 67 K+N Sbjct: 361 KEN 363 >gi|269121142|ref|YP_003309319.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615020|gb|ACZ09388.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 263 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH RH FA L ++ ++ ILGHS L TT+IYT++N ++ E+ + Sbjct: 211 AHAFRHLFAVQFLKKNNNIAALADILGHSSLETTRIYTSLNKRQFQEMLE 260 >gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 305 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 39/54 (72%), Gaps = 1/54 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQTH 57 AH LRH+FAT+ L +GGDL +++ ++GHS L T +Y ++ +K++++ Q+H Sbjct: 245 AHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLAENKKLLQRKHQSH 298 >gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1] Length = 348 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H+LRHS+ THL +G D R IQ +GH ++T IYT+V+S M Sbjct: 280 SPHSLRHSYVTHLTEDGVDRRFIQEAVGHRCDTSTAIYTHVSSDFM 325 >gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 379 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RHSFATHL+ G DL+ I+ +LGH + TT++Y ++ Sbjct: 321 HLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHI 359 >gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] Length = 353 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H+LRHS A HLL G +L I+ ILGH + TT+IY +SK+ E + + + K Sbjct: 275 SPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEIYARTDSKQKREAIENAYVDVINK 334 Query: 64 D 64 + Sbjct: 335 E 335 >gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810] gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810] Length = 392 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FA LS G D+ ++ +LGHS L TT+IY ++ +R ME Sbjct: 326 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRME 374 >gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 326 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+FA+ L NGGDL S+Q I+GHS ++ T+ YT+ + E++ + P Sbjct: 265 CSPHIFRHTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTHFMFDDITELHKKYSP 320 >gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] Length = 326 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 3 TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + +N GGD+ +++ ILGH STT+IYT++ S +M + + Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMEDLLK 323 Query: 62 QKD 64 +KD Sbjct: 324 KKD 326 >gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 420 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 35/46 (76%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT+ VN ++ Sbjct: 361 TFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQK 406 >gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94] gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94] Length = 375 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 318 AVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358 >gi|152973790|ref|YP_001338829.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958572|gb|ABR80599.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 244 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 176 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 216 >gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 390 Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 33/50 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S H LRHSFA+ L+++G L +Q +LGHS+LSTTQ Y ++ + E Sbjct: 323 SARLHDLRHSFASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKE 372 >gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 310 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 32/45 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRH+FA+ L DL+ +Q +LGH+ +STTQIYT+ + K+ Sbjct: 255 TPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQ 299 >gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 329 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V++ Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314 >gi|291288940|ref|YP_003517443.1| resolvase [Klebsiella pneumoniae] gi|290792072|gb|ADD63398.1| resolvase [Klebsiella pneumoniae] Length = 264 Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030] gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030] Length = 394 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FA LS G D+ ++ +LGHS L TT+IY ++ +R ME Sbjct: 328 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRME 376 >gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6] gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6] Length = 409 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HT RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 347 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 397 >gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112] Length = 375 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++ Sbjct: 318 AVHALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358 >gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3 str. Alaska E43] gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] Length = 329 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V++ Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314 >gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 293 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHP 291 >gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam] gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam] Length = 382 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + L N GD+ ++Q ILGHS + + Y N+ SK ++ +++ P Sbjct: 321 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 378 >gi|307323750|ref|ZP_07602960.1| integrase family protein [Streptomyces violaceusniger Tu 4113] gi|306891239|gb|EFN22215.1| integrase family protein [Streptomyces violaceusniger Tu 4113] Length = 359 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 32/50 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L +NG DL +IQ +LGHS ++TT Y +V R+ + + Sbjct: 294 TPHVLRHFCASQLYANGLDLLAIQEVLGHSWIATTMRYVHVQQTRVEDAW 343 >gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 328 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 30/40 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H LRHSFA+H + NGG++ ++Q ILGH+ +S T Y ++ Sbjct: 274 SHVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAHL 313 >gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + L N GD+ ++Q ILGHS + + Y N+ SK ++ +++ P Sbjct: 315 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 372 >gi|218130594|ref|ZP_03459398.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697] gi|217986938|gb|EEC53269.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697] Length = 88 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ Sbjct: 31 HVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHI 69 >gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 342 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + GG++ ++Q ILGHS L+ T Y ++ + + E Sbjct: 272 SHALRHTFASHFMQKGGNILTLQKILGHSSLAMTMRYAHLAPEHLAE 318 >gi|324115878|gb|EGC09806.1| phage integrase [Escherichia coli E1167] Length = 220 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHRLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|238750823|ref|ZP_04612321.1| Int [Yersinia rohdei ATCC 43380] gi|238710967|gb|EEQ03187.1| Int [Yersinia rohdei ATCC 43380] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y N+ Sbjct: 13 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYANL 51 >gi|296162870|ref|ZP_06845651.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886907|gb|EFG66744.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 417 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T +H LRH+ A LL++G L+ + +L H L+TT IY ++S++++E+ Sbjct: 359 TRSHLLRHTMANRLLASGSSLKEVADVLRHRSLNTTLIYAKLDSRKLVEV 408 >gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 328 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-IYDQTHPSIT 61 + H LRHS+ATH++ G + +IQ ILGH + TT IY R+ E IY+ H I Sbjct: 229 VSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYA-----RLTELIYENRHDQIR 283 Query: 62 Q 62 + Sbjct: 284 K 284 >gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 313 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FAT +L+ G L+ +Q +L H+ L TT +Y V+ R+ Sbjct: 252 HRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVDKNRL 295 >gi|28373036|ref|NP_783718.1| Orf81 [Yersinia enterocolitica] gi|32470332|ref|NP_863561.1| hypothetical protein pYVe8081_p56 [Yersinia enterocolitica] gi|122815850|ref|YP_001004116.1| putative resolvase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579390|gb|AAK69267.1|AF336309_62 unknown [Yersinia enterocolitica] gi|23630608|gb|AAN37564.1| Orf81 [Yersinia enterocolitica] gi|121663724|emb|CAL10093.1| putative resolvase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923273|emb|CBW54739.1| p64 in pYVa127/90, site-specific recombinase homologous to XerD/IntI [Yersinia enterocolitica (type O:8)] Length = 244 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA HLL NG + +Q+ +GH +T+IYT + Sbjct: 178 TPHTFRHSFAMHLLQNGLPFKVLQAYMGHQDTKSTEIYTRI 218 >gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 394 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV ++ ++ H I K K Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNHSLIPWKKK 393 >gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 410 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T H RH+FAT + LSNG + ++ ILGH++++TTQIY V +++ E Sbjct: 346 NVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQIYAKVVERKLKE 396 >gi|157149457|ref|YP_001451484.1| resolvase [Escherichia coli E24377A] gi|188574267|ref|YP_001919382.1| resolvase [Escherichia coli 53638] gi|157076624|gb|ABV16335.1| resolvase [Escherichia coli E24377A] gi|188501442|gb|ACD54576.1| resolvase [Escherichia coli 53638] Length = 277 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 207 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 247 >gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 397 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RH+FAT LL+ G DL ++ +LGHS + TTQIY + +K+ Sbjct: 338 TYHVSRHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKK 382 >gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565] Length = 436 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HT RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 374 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 424 >gi|300710747|ref|YP_003736561.1| phage integrase family protein [Halalkalicoccus jeotgali B3] gi|299124430|gb|ADJ14769.1| phage integrase family protein [Halalkalicoccus jeotgali B3] Length = 253 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 30/38 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T+HTLRHS+A + +G + R++Q++LGH +L TT+IY Sbjct: 198 TSHTLRHSYAVQAIKSGINPRNLQALLGHEKLETTEIY 235 >gi|284924596|emb|CBG27770.1| site-specific recombinase [Escherichia coli] Length = 268 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116] Length = 345 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + N GD+ +Q ILGH+++ T Y++ + +M+ Sbjct: 291 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQ 336 >gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] Length = 335 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 28/37 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ +++ ILGHS++ T IY Sbjct: 269 HVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYA 305 >gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 381 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH+FAT +L+ G DL + +LGH+ + TTQIY + + +E Sbjct: 324 TYHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKIVDSKKVE 371 >gi|293416320|ref|ZP_06658959.1| resolvase [Escherichia coli B185] gi|291431676|gb|EFF04659.1| resolvase [Escherichia coli B185] Length = 268 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] Length = 296 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+N +L +++ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 240 SPHVLRHSFATSMLNNHAELGAVKELLGHESLTTTEVYTHTTFEELKKVYEQAHP 294 >gi|190576855|ref|YP_001966187.1| ResA resolvase [Klebsiella pneumoniae] gi|218561692|ref|YP_002394604.1| Resolvase (Protein D) [Escherichia fergusonii ATCC 35469] gi|110264439|gb|ABG56802.1| ResA resolvase [Klebsiella pneumoniae] gi|218350206|emb|CAQ86969.1| Resolvase (Protein D) [Escherichia fergusonii] gi|323958891|gb|EGB54567.1| phage integrase [Escherichia coli H489] Length = 258 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 190 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|148589|gb|AAA24900.1| Protein D [Plasmid F] Length = 256 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 280 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHS+A+HL++ G L ++ +LGH R TT++YT ++ + E Y Sbjct: 229 HRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYTLLHGDKRREEY 276 >gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] Length = 278 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HTLRH+FA HL G L IQ++LGH TQIY + + E YDQ Sbjct: 225 SPHTLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQTQIYARLYNHARKEQYDQ 276 >gi|300777311|ref|ZP_07087169.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300502821|gb|EFK33961.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HT RH+F T L+ G L S+ ++GH + TTQIY + S+++ + D P + Sbjct: 348 VTFHTARHTFGTMFLTEGVPLESLSKMMGHKNILTTQIYAKITSQKISKDMDLVAPKFKE 407 >gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 239 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 29/40 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 178 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 217 >gi|221218554|ref|YP_002527512.1| hypothetical protein pO103_57 [Escherichia coli] gi|310286463|ref|YP_003937724.1| resolvase (protein D) [Escherichia coli] gi|215252882|gb|ACJ63541.1| conserved hypothetical protein [Escherichia coli] gi|308826792|emb|CBX36056.1| resolvase (Protein D) [Escherichia coli] Length = 263 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|321271492|gb|ADW79581.1| putative site-specific recombinase [Escherichia coli] gi|332346551|gb|AEE59883.1| putative site-specific recombinase [Escherichia coli UMNK88] Length = 262 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|157149395|ref|YP_001451419.1| resolvase [Escherichia coli E24377A] gi|157076562|gb|ABV16275.1| resolvase [Escherichia coli E24377A] Length = 268 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|327536637|gb|AEA95469.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Dublin] Length = 256 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|170650847|ref|YP_001739996.1| resolvase [Escherichia coli SMS-3-5] gi|170522123|gb|ACB20300.1| resolvase [Escherichia coli SMS-3-5] gi|312949050|gb|ADR29876.1| Resolvase [Escherichia coli O83:H1 str. NRG 857C] Length = 258 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 189 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 229 >gi|300820004|ref|ZP_07100184.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300527453|gb|EFK48515.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|321271395|gb|ADW79485.1| putative site-specific recombinase [Escherichia coli] gi|323133074|gb|ADX20502.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323959152|gb|EGB54818.1| phage integrase [Escherichia coli H489] Length = 261 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319] gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319] Length = 435 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ + K+K Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLFSKEK 413 Query: 66 KN 67 KN Sbjct: 414 KN 415 >gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b] gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b] Length = 313 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHS AT L+ G D+R +Q +LGH+ ++TT+IYT V+ + Sbjct: 252 TPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSL 297 >gi|157418199|ref|YP_001481271.1| resolvase [Escherichia coli APEC O1] gi|169546498|ref|YP_001711907.1| hypothetical protein pVM01_p058 [Escherichia coli] gi|301646995|ref|ZP_07246831.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331652534|ref|ZP_08353545.1| resolvase (Protein D) [Escherichia coli M718] gi|88770249|gb|ABD51686.1| resolvase [Escherichia coli APEC O1] gi|168831050|gb|ACA34831.1| unknown [Escherichia coli] gi|301074840|gb|EFK89646.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331049640|gb|EGI21706.1| resolvase (Protein D) [Escherichia coli M718] Length = 263 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 330 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 3/62 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ ++Q Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNKN--PLSQ 327 Query: 63 KD 64 K+ Sbjct: 328 KE 329 >gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3] gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3] Length = 373 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + N GD+ +Q ILGH+++ T Y++ + +M+ Sbjct: 319 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQ 364 >gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 359 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FAT+ + D+R +Q ILGH + TTQ YT+V ++ + I Sbjct: 294 HDLRHTFATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREKVNI 340 >gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 380 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+ THLL G D +Q LGHS STT +YT+V S + Q Sbjct: 318 HCLRHSYTTHLLEAGYDPLFVQQQLGHSYASTTALYTSVGSDFKQRVVQQ 367 >gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 337 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 31/42 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HT+RH+ ATHLL +G D+ +I++ LGH ++TT IY VN Sbjct: 260 SPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 301 >gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 338 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 31/42 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HT+RH+ ATHLL +G D+ +I++ LGH ++TT IY VN Sbjct: 261 SPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVN 302 >gi|329996758|ref|ZP_08302555.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|328539320|gb|EGF65345.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 241 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 173 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 213 >gi|298206478|ref|YP_003717580.1| resolvase/integrase [Escherichia coli ETEC 1392/75] gi|297374350|emb|CBL93324.1| resolvase/integrase [Escherichia coli ETEC 1392/75] Length = 268 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|73853284|ref|YP_308780.1| site-specific recombinase [Escherichia coli] gi|73476868|gb|AAZ76483.1| Site-specific recombinase [Escherichia coli] Length = 268 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 326 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ AT + G D++S+Q ILGH ++TTQIYT+VN Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVN 301 >gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43] gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43] Length = 366 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQT 56 H LRH+FAT L GD+R++Q ILGHS + TT Y +V ++KR M+ T Sbjct: 293 HDLRHTFATRFLRATGDMRALQLILGHSSIETTMRYAHVTAADAKRRMDAMSAT 346 >gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo] gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs] gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel] gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo] gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs] gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel] gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope] Length = 398 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRH FAT +LR++Q++LGH+ ++TT+IYT V Sbjct: 282 TMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAV 322 >gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6] gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6] Length = 348 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AH LRH F T L + IQ+++GH+ T++IYT+++ ++M + D+ +P Sbjct: 274 AHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTNVLDKGNP 327 >gi|322836440|ref|YP_004215817.1| integrase [Rahnella sp. Y9602] gi|321170993|gb|ADW76690.1| integrase family protein [Rahnella sp. Y9602] Length = 260 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRV 231 >gi|298388185|ref|ZP_06997722.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259053|gb|EFI01940.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 77 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 17 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 55 >gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] Length = 337 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT K Sbjct: 278 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----ITLK 333 Query: 64 DKK 66 K+ Sbjct: 334 RKE 336 >gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT L+ G D+R IQ+ LGH+ +T+ Y V + M ++ D Sbjct: 219 HKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRDELMFKVVD 267 >gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666] gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666] Length = 286 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 29/41 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRH FATHLL G DL +IQ +LGH ++TT Y ++ S Sbjct: 225 HTLRHCFATHLLEGGVDLFTIQKLLGHGHIATTGRYLHLIS 265 >gi|331685896|ref|ZP_08386473.1| resolvase (Protein D) [Escherichia coli H299] gi|331076849|gb|EGI48070.1| resolvase (Protein D) [Escherichia coli H299] Length = 256 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|209916841|ref|YP_002291161.1| resolvase [Escherichia coli SE11] gi|209915267|dbj|BAG80339.1| resolvase [Escherichia coli SE11] Length = 268 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM 18228] gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19] gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM 18228] gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19] Length = 340 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HT RHS A H+L G +L I+ LGH+ +TT+IY + K + ++ P I Q+ Sbjct: 258 SCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEKLKEQALEKLAPGIIQE 317 Query: 64 DK 65 K Sbjct: 318 SK 319 >gi|83404870|ref|YP_424884.1| resolvase [Escherichia coli] gi|299836151|ref|YP_003717720.1| putative resolvase [Escherichia coli ETEC 1392/75] gi|46949067|gb|AAT07421.1| ResA [Escherichia coli] gi|83308595|emb|CAI79580.1| resolvase [Escherichia coli] gi|297374500|emb|CBL93575.1| putative resolvase [Escherichia coli ETEC 1392/75] Length = 261 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] Length = 326 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ AT + G D++S+Q ILGH ++TTQIYT+VN Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVN 301 >gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 327 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 2/64 (3%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + GG D+R ++ +LGH L TT+IYT+++S++M D ++P Sbjct: 263 SCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMKNAAD-SNPLAKI 321 Query: 63 KDKK 66 K KK Sbjct: 322 KPKK 325 >gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii LLAP12] gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii LLAP12] Length = 326 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 40/61 (65%), Gaps = 1/61 (1%) Query: 1 MSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 ++ TAHTLRH+FAT L +N G L + ++GH ++TT IYT + +++ E +++ S Sbjct: 263 INVTAHTLRHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHMERSGVS 322 Query: 60 I 60 I Sbjct: 323 I 323 >gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4] gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 390 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH FA+++L GG + +Q +LGH+ +S++Q+Y + +R+ Sbjct: 326 HALRHGFASNVLDAGGSIDEVQELLGHASISSSQVYVHPAPERL 369 >gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152] gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152] Length = 290 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH FAT D+R++Q LGHS ++TTQIYT V+ Sbjct: 236 TMHKLRHRFATTAYRATRDIRAVQEALGHSSVATTQIYTAVD 277 >gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium bavaricum] Length = 324 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 34/49 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+ L+ G DLR+IQ +LGH+ STT IY +++ ++ + D Sbjct: 272 HDLRHTFASLLVQAGIDLRTIQVLLGHTSYSTTLIYAHLSQNQLQDAID 320 >gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057] gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057] Length = 372 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 312 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350 >gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 160 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 29/40 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 99 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 138 >gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] Length = 388 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H+ RH+FA +L G ++ ++Q +LGH LSTTQIY + K+ E Sbjct: 325 TFHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIYAKILDKKKQE 372 >gi|317052809|ref|YP_004119575.1| integrase family protein [Pantoea sp. At-9b] gi|316953549|gb|ADU73019.1| integrase family protein [Pantoea sp. At-9b] Length = 288 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+++QS+LGH +T++YT V Sbjct: 219 TLHTFRHSYAMHMLYAGTPLKALQSLLGHKSAKSTEVYTRV 259 >gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B str. Eklund 17B] gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 329 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ Sbjct: 271 TPHKLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVD 313 >gi|301647508|ref|ZP_07247310.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|301074355|gb|EFK89161.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] Length = 262 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 194 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 382 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 + R SFA H L GGD+R++Q +LGH ++ T IY T +N +R+ D Sbjct: 330 SFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLNKRRIRSPLD 380 >gi|209921988|ref|YP_002296061.1| resolvase [Escherichia coli SE11] gi|307313345|ref|ZP_07592968.1| integrase family protein [Escherichia coli W] gi|209915166|dbj|BAG80239.1| resolvase [Escherichia coli SE11] gi|306906767|gb|EFN37277.1| integrase family protein [Escherichia coli W] gi|315063802|gb|ADT78128.1| Resolvase [Escherichia coli W] gi|323380941|gb|ADX53208.1| integrase family protein [Escherichia coli KO11] Length = 259 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|194433591|ref|ZP_03065868.1| site-specific recombinase [Shigella dysenteriae 1012] gi|194418183|gb|EDX34275.1| site-specific recombinase [Shigella dysenteriae 1012] Length = 252 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 184 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224 >gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] Length = 289 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H LRH+FAT L +N D+R +Q LGHS ++TTQ YT+V + + E+ + Sbjct: 219 LGTHPHILRHAFATEL-TNYADIRVVQESLGHSDITTTQRYTHVYREALKELVE 271 >gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 333 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +T AH RH+ A+ +L +G LR I +LGH TT IYT V+ K + Sbjct: 274 TTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKAL 321 >gi|326626310|gb|EGE32654.1| resolvase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 260 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232 >gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 355 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT L+SNG D +++ +LGH+ T + Y++VN M Sbjct: 299 TVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMM 344 >gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503] gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503] Length = 421 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA+ L+NG L I ++LGHSR TTQ Y +++ + ME Sbjct: 359 HDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHAME 404 >gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 286 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHTLRHS+ATHLL G D+ +++ +LGH + TT Y +V Sbjct: 228 TAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHV 268 >gi|191166265|ref|ZP_03028098.1| resolvase [Escherichia coli B7A] gi|190903692|gb|EDV63408.1| resolvase [Escherichia coli B7A] Length = 259 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] Length = 355 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT L+SNG D +++ +LGH+ T + Y++VN M Sbjct: 299 TVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMM 344 >gi|323974510|gb|EGB69637.1| phage integrase [Escherichia coli TW10509] Length = 261 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 338 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT+RH+ ATHLL G D+ +I++ LGH L+TT IY V+ + ++ P Sbjct: 260 VSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIYAEVDIQMKIQALKMCEP 315 >gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec] gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec] Length = 377 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRHS+ THL+ +G D + +Q +GH ST IYT+V+ M Sbjct: 313 TPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFM 358 >gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180] gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180] Length = 356 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 348 >gi|132266|sp|P06615|REDF_ECOLI RecName: Full=Resolvase; AltName: Full=Protein D gi|41210|emb|CAA28640.1| unnamed protein product [Escherichia coli] Length = 268 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 170 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 29/40 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 109 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 148 >gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium perfringens ATCC 13124] gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 354 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH++AT L++NG D ++ ILGHS T ++Y++VN+ +++++ H I Sbjct: 295 FNISLHELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNN----DMFNKAHSII 350 >gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] Length = 327 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 27/37 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T +Y Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYA 305 >gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+AT L++NG L IQ+++GH + TT++Y ++ E+Y + Sbjct: 207 HQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKK 256 >gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 327 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 27/37 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T +Y Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYA 305 >gi|168822775|ref|ZP_02834775.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340857|gb|EDZ27621.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320089223|emb|CBY98976.1| Resolvase Protein D [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 260 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQAMMGHKSISSTEVYTKV 232 >gi|207110374|ref|ZP_03244536.1| integrase-recombinase protein [Helicobacter pylori HPKX_438_CA4C1] Length = 99 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 45 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEE 91 >gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 410 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 341 TYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKKI 386 >gi|189403476|ref|ZP_02795705.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189360465|gb|EDU78884.1| resolvase [Escherichia coli O157:H7 str. EC4486] Length = 259 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 190 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|83404838|ref|YP_424852.1| putative resolvase [Escherichia coli] gi|83308563|emb|CAI79535.1| putative resolvase [Escherichia coli] Length = 228 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 160 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|9507757|ref|NP_061423.1| site-specific recombinase [Plasmid F] gi|58383299|ref|YP_194871.1| resolvase protein D [Salmonella enterica subsp. enterica serovar Typhimurium] gi|187736744|ref|YP_001816482.1| ResD [Escherichia coli 1520] gi|256367711|ref|YP_003108268.1| ResD [Escherichia coli] gi|291289364|ref|YP_003517696.1| resolvase [Klebsiella pneumoniae] gi|302595370|ref|YP_003829232.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli] gi|302595489|ref|YP_003829107.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli] gi|309797304|ref|ZP_07691698.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|8918867|dbj|BAA97914.1| resolvase [Plasmid F] gi|37962778|gb|AAR05725.1| resolvase protein D [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62550777|emb|CAH64700.1| resolvase [uncultured bacterium] gi|172051326|emb|CAP07668.1| ResD [Escherichia coli] gi|228480648|gb|ACQ41975.1| ResD [Escherichia coli] gi|290792325|gb|ADD63650.1| resolvase [Klebsiella pneumoniae] gi|302310130|gb|ADL14001.1| ResD [Escherichia coli] gi|302310258|gb|ADL14126.1| ResD [Escherichia coli] gi|308119051|gb|EFO56313.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 268 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 372 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 312 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350 >gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 372 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 312 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350 >gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5] Length = 330 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 29/38 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH LRH+FAT+L+ G +L IQ +LGHS ++ T+IYT Sbjct: 278 AHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYT 315 >gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 609 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 ST+ H RH+ T +L+ G L +Q LGH+ L TT IY + RM + H + Sbjct: 547 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLK 606 Query: 62 Q 62 Q Sbjct: 607 Q 607 >gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] Length = 295 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T TLR+SFA HLL +G D R IQ +LG+S L + Y + + + Y Q P I Sbjct: 237 AVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295 >gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666] gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 30/45 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S HTLRH FATHLL +G DL +I +LGH +STT Y ++ S Sbjct: 226 SGGTHTLRHCFATHLLESGVDLYTISRLLGHRHISTTSRYLHLIS 270 >gi|320183918|gb|EFW58744.1| Resolvase [Shigella flexneri CDC 796-83] Length = 288 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 212 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 257 >gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453] gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453] Length = 268 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 H LRHSFA+ L + G DL++I ILGHS LSTT +IYT Sbjct: 205 HDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYT 242 >gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57] Length = 355 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3] gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3] Length = 322 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRH+FAT +L G DL + +LGH+R TT++YT Sbjct: 266 TPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVYT 304 >gi|9507462|ref|NP_052469.1| resolvase [Plasmid ColIb-P9] gi|32470177|ref|NP_863401.1| hypothetical protein R64_p046 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|194447254|ref|YP_002043869.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300904883|ref|ZP_07122706.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301305699|ref|ZP_07211787.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|4512459|dbj|BAA75108.1| resolvase [Plasmid ColIb-P9] gi|20521545|dbj|BAB91609.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|70610211|gb|AAZ05358.1| resolvase [Salmonella enterica] gi|194405558|gb|ACF65779.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300403216|gb|EFJ86754.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300839039|gb|EFK66799.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315253185|gb|EFU33153.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] gi|321271591|gb|ADW79679.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Kentucky] gi|321271691|gb|ADW79778.1| putative site-specific recombinase [Escherichia coli] Length = 259 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259] gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259] Length = 341 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSIT 61 + H+LRHS A HLL G +L I+ ILGH + TT+IY +SK+ E + + I Sbjct: 258 VSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALEAAYIDVIP 317 Query: 62 QKDKK 66 DKK Sbjct: 318 TMDKK 322 >gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135] gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135] gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135] gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135] Length = 372 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK 364 >gi|297154638|gb|ADI04350.1| integrase family protein [Streptomyces bingchenggensis BCW-1] Length = 177 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L NG DL +IQ +LGHS ++TT Y +V R+ + + Sbjct: 112 TPHVLRHFCASQLYGNGLDLLAIQEVLGHSWIATTMRYIHVQQTRVEDAW 161 >gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10] gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10] Length = 370 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|188574132|ref|YP_001919300.1| resolvase [Escherichia coli 53638] gi|188501307|gb|ACD54442.1| resolvase [Escherichia coli 53638] Length = 226 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 158 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198 >gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 165 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 108 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 152 >gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51] Length = 355 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7] Length = 355 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 347 >gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185] gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185] Length = 334 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNILALQKILGHATIQQTMAYAH 306 >gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27] gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27] Length = 363 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 355 >gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 258 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H LRHSFA+H + NGG++ ++Q ILGHS L+ T Y ++ Sbjct: 187 ASHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAHL 227 >gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 339 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H LRH+FA+H + NGG++ ++Q ILGH+ L+ T Y ++ + ++ Sbjct: 271 SSHVLRHTFASHFVMNGGNILTLQKILGHTTLAMTMRYAHLAPDHLQDV 319 >gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7] gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7] gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7] gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7] gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7] gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7] gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7] gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7] Length = 334 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H LRHS ATHL+ NG ++ +++ LGH ++TTQIY + N + Sbjct: 252 SVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPE 297 >gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 33/45 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT+L+ +L IQ++LGH+ + TQIYT+V+ + + Sbjct: 244 AHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPESL 288 >gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217] gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217] Length = 195 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHS+ATHLL G D+ S++ +LGH+ + TT Y +V Sbjct: 135 VTTHSLRHSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHV 176 >gi|323184105|gb|EFZ69483.1| resolvase [Escherichia coli 1357] Length = 226 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 158 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198 >gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 348 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 288 HLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 326 >gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] Length = 372 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 312 HLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHI 350 >gi|218454968|ref|YP_002381191.1| putative resolvase (Protein D) [Escherichia coli UMN026] gi|218350109|emb|CAQ87527.1| putative resolvase (Protein D) [Escherichia coli UMN026] Length = 296 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268 >gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32] Length = 355 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori SouthAfrica7] Length = 355 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|194430310|ref|ZP_03062803.1| resolvase [Escherichia coli B171] gi|194411640|gb|EDX27969.1| resolvase [Escherichia coli B171] Length = 253 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 184 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224 >gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464] Length = 353 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|238755955|ref|ZP_04617281.1| Resolvase [Yersinia ruckeri ATCC 29473] gi|238705807|gb|EEP98198.1| Resolvase [Yersinia ruckeri ATCC 29473] Length = 259 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A HLL G L+ +QS++GH L +T++YT + Sbjct: 190 TPHTFRHSYAMHLLYAGVPLKVLQSLMGHKSLKSTEVYTRI 230 >gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36] gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36] gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 415 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH++AT L+NG D+ ++ +LGH+ + TTQIY V K+ E Sbjct: 357 TFHCFRHTYATLQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDE 404 >gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str. Sheeba] gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str. Sheeba] Length = 361 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 307 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 353 >gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 376 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363 >gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium acetobutylicum EA 2018] Length = 328 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+++ + + Sbjct: 269 TPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDDENL 315 >gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20] Length = 355 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900] Length = 194 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T+H+ R SFAT L+ GGD+ SIQ ++GHS + TTQ Y + + + ++ ++ Sbjct: 138 IQATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILTTQKYFASDPELLRQVAEK 192 >gi|187730006|ref|YP_001878775.1| resolvase [Shigella boydii CDC 3083-94] gi|187426750|gb|ACD06027.1| resolvase [Shigella boydii CDC 3083-94] Length = 299 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268 >gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 376 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363 >gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae RM3277] gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae RM3277] Length = 354 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 32/45 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S+++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKL 341 >gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] Length = 376 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363 >gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 415 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHS AT +L G L+ I ++L H ++TTQIY V+ + +I Sbjct: 358 AHVLRHSVATSMLGQGASLQDIAAVLRHQSVATTQIYAKVDIAALRQI 405 >gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 320 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T + LRH+FA L GGD S+Q ILGH+ L+ T+ Y ++ + E++++ P Sbjct: 243 VKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEVHEKASP 300 >gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 367 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 310 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 354 >gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 376 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363 >gi|306816761|ref|ZP_07450886.1| putative resolvase (Protein D) [Escherichia coli NC101] gi|305849888|gb|EFM50350.1| putative resolvase (Protein D) [Escherichia coli NC101] Length = 298 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 222 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 267 >gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 334 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|301022658|ref|ZP_07186514.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300397408|gb|EFJ80946.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 299 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 268 >gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A] Length = 355 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043] gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043] Length = 328 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH+FATH + NGG++ ++Q ILGHS + T +Y Sbjct: 271 HVFRHTFATHFMMNGGNIITLQRILGHSTIQQTMVYA 307 >gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 301 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFA L GGDL S+Q+I+GHS L++T+ Y + ++ + + + Q P Sbjct: 243 SPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYITLLTEDIQKQHRQFSP 297 >gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1] gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1] Length = 329 Score = 47.4 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRHS A H+L D+R + LGH+ L +T+IY + +E+ D P Sbjct: 252 SITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLRADPTEKLEMLDALAP 308 >gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 292 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFAT +L+N L +++ +LGH L+TT+IYT+ + + ++Y Q HP Sbjct: 236 SPHVLRHSFATAMLNNQAGLEAVKELLGHESLTTTEIYTHTTFEELKKVYQQAHP 290 >gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 392 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/39 (53%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372 >gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d] Length = 356 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348 >gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4] gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4] Length = 348 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RH+ AT L GGD+R +Q ILGH+ L T YT+V+ K + + ++Q P Sbjct: 280 HLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVSGKSIAKQHEQYSP 332 >gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 337 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 + T HT RH AT LL+ G L + +ILGH+ T Q Y +R+ E++DQ P Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDERLQELHDQFAP 332 >gi|12084943|ref|NP_073236.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2] gi|60115476|ref|YP_209268.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71559012|ref|YP_271739.1| resolvase [Salmonella enterica] gi|161867892|ref|YP_001598073.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|167995062|ref|ZP_02576152.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|169647098|ref|YP_001716122.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|198241686|ref|YP_002213875.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224504248|ref|YP_002635587.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261888697|ref|YP_003264384.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|305696866|ref|YP_003864181.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|12060313|dbj|BAB20519.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|16445238|gb|AAL23456.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|45359300|gb|AAS58887.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|68166311|gb|AAY88072.1| resolvase [Salmonella enterica] gi|161087271|gb|ABX56741.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169246231|gb|ACA51205.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|197936202|gb|ACH73536.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327175|gb|EDZ13939.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|224470957|gb|ACN48786.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261857283|emb|CBA11347.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|267990067|gb|ACY86464.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|304376168|dbj|BAJ15330.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312915724|dbj|BAJ39697.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|322712981|gb|EFZ04553.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323133031|gb|ADX20460.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621616|gb|EGE27962.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|327536763|gb|AEA95594.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|332991453|gb|AEF10435.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 260 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 192 TPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232 >gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019] gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019] Length = 334 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239] gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 400 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L NG +++Q+ILGHS +STT IYT+V Sbjct: 342 HDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHV 381 >gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12] gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12] Length = 376 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 363 >gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 275 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+FAT + G DLR++Q ILGH + TT I+ Sbjct: 231 TPHILRHTFATTCVDKGMDLRTLQDILGHEDIKTTSIF 268 >gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4] gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4] Length = 356 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348 >gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 337 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ IT K Sbjct: 278 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK----ITLK 333 Query: 64 DKK 66 K+ Sbjct: 334 RKE 336 >gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38] gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38] Length = 356 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 348 >gi|324016996|gb|EGB86215.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 227 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 166 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 206 >gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710] gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710] Length = 333 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L +Q +LGHS + TTQ+Y +V + YD+ Sbjct: 243 HILRHTFATQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDDIRSEYDK 292 >gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] Length = 225 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH FAT + DLR++Q +LGH ++STTQ Y ++ +R+ Sbjct: 174 HQLRHRFATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRL 217 >gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 422 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FAT + LSNG + ++ +LGH++++TTQIY V K++ E ++ + Sbjct: 347 TFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKKVEEDMNKLQEVLQS 406 Query: 63 KDK 65 K K Sbjct: 407 KSK 409 >gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162] gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162] Length = 334 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L S+Q +LGH+ + TTQ+Y +++ + + + Y + Sbjct: 243 HVLRHTFATRALRRGLSLPSLQRLLGHADIKTTQVYLHLSIEDLKKEYQE 292 >gi|10955421|ref|NP_053133.1| resolvase [Escherichia coli] gi|190014958|ref|YP_001965470.1| Putative resolvase [Escherichia coli] gi|191174386|ref|ZP_03035890.1| resolvase [Escherichia coli F11] gi|215276275|ref|YP_002332238.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218511244|ref|YP_002415702.1| putative resolvase (Protein D) [Escherichia coli 55989] gi|218692932|ref|YP_002406044.1| Resolvase [Escherichia coli UMN026] gi|256026287|ref|ZP_05440152.1| resolvase (protein D) [Escherichia sp. 4_1_40B] gi|256855302|ref|YP_003162546.1| putative resolvase [Escherichia coli] gi|293404649|ref|ZP_06648642.1| resolvase [Escherichia coli FVEC1412] gi|300897136|ref|ZP_07115593.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|6009447|dbj|BAA84906.1| Resolvase [Escherichia coli] gi|109389679|gb|ABG29598.1| Putative resolvase [Escherichia coli] gi|190905319|gb|EDV64954.1| resolvase [Escherichia coli F11] gi|215267871|emb|CAS07541.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218350095|emb|CAQ87514.1| Resolvase [Escherichia coli UMN026] gi|218359345|emb|CAU95831.1| putative resolvase (Protein D) [Escherichia coli 55989] gi|256275514|gb|ACU68787.1| putative resolvase [Escherichia coli] gi|281181668|dbj|BAI57997.1| resolvase [Escherichia coli SE15] gi|291428361|gb|EFF01387.1| resolvase [Escherichia coli FVEC1412] gi|300359078|gb|EFJ74948.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|315290869|gb|EFU50238.1| site-specific recombinase, phage integrase family [Escherichia coli MS 153-1] gi|324005322|gb|EGB74541.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] gi|324015231|gb|EGB84450.1| site-specific recombinase, phage integrase family [Escherichia coli MS 60-1] Length = 269 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori 2017] Length = 363 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 355 >gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] Length = 604 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G L ++Q +LGHS + TTQIY ++ Sbjct: 236 HALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHL 274 >gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908] gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018] Length = 363 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 355 >gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 284 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS ATHLL G L ++ LGH L TQIY V + ++ I Sbjct: 238 HYLRHSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKVGAHQLAVI 284 >gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1] gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168] gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1] gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168] Length = 334 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|288549717|ref|ZP_06390780.1| site-specific recombinase, phage integrase family [Enterobacter cancerogenus ATCC 35316] gi|288318031|gb|EFC56969.1| site-specific recombinase, phage integrase family [Enterobacter cancerogenus ATCC 35316] Length = 241 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 29/38 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRHSFATH + NGG++ ++Q IL H++++ T +Y + Sbjct: 174 HALRHSFATHFMINGGNIITLQRILDHTKIAQTMVYAH 211 >gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969] gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969] Length = 400 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L NG +++Q+ILGHS +STT IYT+V Sbjct: 342 HDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHV 381 >gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128] gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8] gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128] gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori B8] Length = 355 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKE 347 >gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83] Length = 356 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348 >gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+AT L++NG L IQ+++GH + TT++Y ++ E+Y + Sbjct: 228 HQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKK 277 >gi|302595333|ref|YP_003829048.1| resolvase [Escherichia coli] gi|302310069|gb|ADL13942.1| TnpR [Escherichia coli] Length = 311 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 242 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 282 >gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361] gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361] Length = 470 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 406 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 465 >gi|168998697|ref|YP_001687965.1| phage integrase family protein [Klebsiella pneumoniae NTUH-K2044] gi|238549716|dbj|BAH66067.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 259 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLNLLQSLMGHKSISSTEVYTKV 231 >gi|58000293|ref|YP_190186.1| resolvase [Escherichia coli] gi|47716807|gb|AAT37583.1| resolvase [Escherichia coli] Length = 260 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 231 >gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171] gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012] gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171] gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012] gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-] gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74] Length = 334 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A] gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A] Length = 346 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+ RH+ ATH L +G +L IQ +LGH + TT Y V+S++M++ Sbjct: 267 CHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYVGVSSEQMIQ 313 >gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 331 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T Y Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307 >gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52] Length = 355 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 534 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRHS+AT L++NG ++ + +LGH + +T+IY V+ + + E+ Sbjct: 479 HSLRHSYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVDFQSLREV 525 >gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12] gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12] Length = 356 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348 >gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41] gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 632 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S H RH+FAT LL+ G DL I LGH +L TT+IY + + +++ +Y Sbjct: 576 SLHPHRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYACLPNWKLISLY 627 >gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1] gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1] Length = 356 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348 >gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695] gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695] Length = 362 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 308 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 354 >gi|37528605|ref|NP_931950.1| hypothetical protein plu4792 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788044|emb|CAE17164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 144 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T +Y ++ Sbjct: 85 HVLRHTFASHFMMNGGNIIALQQILGHASIIQTMVYAHL 123 >gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A] gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206] gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A] gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68] gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206] Length = 334 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 256 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/42 (54%), Positives = 29/42 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRHS+ATHL+ +G D +Q LGH STT IYT+V+ Sbjct: 190 TPHCLRHSYATHLIEDGHDPVFVQRQLGHVYQSTTSIYTHVS 231 >gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 246 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFA HLL +G L+ + +LGH + + ++YTNV Sbjct: 193 HTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESPEVYTNV 231 >gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli IHE3034] gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167] Length = 331 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T Y Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307 >gi|295090287|emb|CBK76394.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 289 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 31/43 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 AH+LRH++ATH NG DL S++S LGH L++T IY ++ S Sbjct: 228 CAHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270 >gi|295116103|emb|CBL36950.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 289 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 31/43 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 AH+LRH++ATH NG DL S++S LGH L++T IY ++ S Sbjct: 228 CAHSLRHAYATHSYENGLDLLSLKSRLGHRSLNSTAIYVHLAS 270 >gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922] gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922] Length = 355 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 30/41 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+LRHS+ATHLL G D+ IQ +LGH + TT YT+V++ Sbjct: 301 HSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTHVSN 341 >gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30] Length = 355 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|238025655|ref|YP_002909887.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880320|gb|ACR32651.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 613 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T+ H+LRH+F T +++G L +Q +LGH+ L TT +Y +R Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRR 591 >gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470] gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470] Length = 356 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 348 >gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253] Length = 331 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T Y Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307 >gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 456 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 392 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 451 >gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1] gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1] Length = 331 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T Y Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYA 307 >gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 329 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 28/38 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++Q ILGHS + T +Y + Sbjct: 270 HVLRHTFASHFMMNGGNILALQRILGHSSILQTMVYAH 307 >gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412 >gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098] gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098] Length = 447 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 32/39 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FAT +L G D+ ++++++GH+ ++TT+IY ++ Sbjct: 382 HTLRHTFATRMLEAGLDIYALKTLMGHASVTTTEIYLHI 420 >gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239] gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 202 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L NG +++Q+ILGHS +STT IYT+V Sbjct: 144 HDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHV 183 >gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ AT L +G +LR IQ +LGH+ TT Y VN K+++E Sbjct: 234 HKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAKVNQKQLIE 279 >gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4] gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5] gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA] gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973] gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36] gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606] gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis] gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4] gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5] gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA] gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973] gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606] gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36] Length = 372 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK 364 >gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75] Length = 363 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEE 355 >gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli IHE3034] gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010] Length = 334 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] Length = 397 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV Sbjct: 334 VSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 375 >gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM 22836] Length = 342 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH----PS 59 + HTLRH+ A HLL G L I+ ILGHS + TT+IY +SK+ E ++ + P+ Sbjct: 262 SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPN 321 Query: 60 IT-----QKDK 65 I +KDK Sbjct: 322 IESENLWEKDK 332 >gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973] gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973] Length = 417 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ + +Q P + Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFQDVEQILPQLA 411 >gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565] gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565] Length = 321 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGHS ++ T Y + Sbjct: 263 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAH 300 >gi|56475688|ref|YP_157277.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56311731|emb|CAI06376.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 417 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T +H LRH+ A LL+ G L+ + +L H L+TT IY ++S+++ E+ Sbjct: 359 TRSHLLRHTMANRLLAGGASLKEVADVLRHRSLNTTLIYAKLDSRKLAEV 408 >gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1] gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1] Length = 333 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L +Q +LGHS + TTQIY +V + + YD+ Sbjct: 242 PHILRHTFATQALRKGLSLPYLQRLLGHSDIKTTQIYLHVTIEDIRSEYDK 292 >gi|152973649|ref|YP_001338689.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496725|ref|YP_003560418.1| resolvase [Klebsiella pneumoniae] gi|150958431|gb|ABR80459.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339434|gb|ADE43988.1| resolvase [Klebsiella pneumoniae] Length = 260 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+ H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 TPHTFRHSYGMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007] Length = 334 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAH 306 >gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319] gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319] Length = 417 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412 >gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 417 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412 >gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 417 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412 >gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879] gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879] Length = 374 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 32/45 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHSFAT L + DL +Q LGHS + T++IYT+ +++R+ Sbjct: 306 AHLLRHSFATMLYNKSKDLILVQESLGHSSVETSRIYTHFDNQRL 350 >gi|332885048|gb|EGK05301.1| hypothetical protein HMPREF9456_02971 [Dysgonomonas mossii DSM 22836] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH----PS 59 + HTLRH+ A HLL G L I+ ILGHS + TT+IY +SK+ E ++ + P+ Sbjct: 12 SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPN 71 Query: 60 IT-----QKDK 65 I +KDK Sbjct: 72 IESENLWEKDK 82 >gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 412 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 348 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 407 >gi|113473887|ref|YP_718150.1| putative integrase [Sphingomonas sp. KA1] gi|112821567|dbj|BAF03438.1| putative integrase [Sphingomonas sp. KA1] Length = 515 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T +H RHS AT++L G L S+ +IL HS TT IY V+ +M+I Sbjct: 454 LPTGSHIFRHSLATNMLRAGAGLESVGTILRHSSPETTAIYAKVDLPMLMKI 505 >gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559] gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559] Length = 416 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + LSNG + ++ +LGH++LSTTQIY V Sbjct: 346 TFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARV 387 >gi|332884809|gb|EGK05065.1| hypothetical protein HMPREF9456_03218 [Dysgonomonas mossii DSM 22836] gi|332885880|gb|EGK06126.1| hypothetical protein HMPREF9456_02390 [Dysgonomonas mossii DSM 22836] Length = 98 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH----PS 59 + HTLRH+ A HLL G L I+ ILGHS + TT+IY +SK+ E ++ + P+ Sbjct: 18 SCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSPN 77 Query: 60 IT-----QKDK 65 I +KDK Sbjct: 78 IESENLWEKDK 88 >gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145] Length = 331 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGHS + T Y Sbjct: 269 AVHVLRHTFATHFIMNGGNIITLQRILGHSHIQQTMTYA 307 >gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] Length = 288 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H LRH+FA LL +G D+ ++Q ILGH+ L+TT +Y Sbjct: 228 VEVSPHQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVY 268 >gi|331083037|ref|ZP_08332156.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399774|gb|EGG79435.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 281 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64 HTLRH+FAT N + + +QS+LGHS +S T IYT+V +M E + + TQ D Sbjct: 204 HTLRHTFATRCFENKMEPKVVQSLLGHSSISITLNIYTHVLDNKMDEEIKKFGVAKTQND 263 >gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 372 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHSF + + G D+ IQ+ +GH ++TTQIY+ + +++M E+ D+ IT K Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK----ITLK 368 Query: 64 DKK 66 K+ Sbjct: 369 RKE 371 >gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 337 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGHS + T IY Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYA 317 >gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16] gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16] Length = 355 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEE 347 >gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 298 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 4/47 (8%) Query: 3 TTAHTLRHSFATHLLSNGGD----LRSIQSILGHSRLSTTQIYTNVN 45 + H+LRHS+ATHL+ G + LR IQ ILGHS +TT IY++++ Sbjct: 230 VSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLS 276 >gi|28378636|ref|NP_785528.1| integrase, fragment [Lactobacillus plantarum WCFS1] gi|28271472|emb|CAD64377.1| integrase, fragment [Lactobacillus plantarum WCFS1] Length = 107 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 S H+LRH+ AT LL NG + IQ LGHSR+STT IY++V +K Sbjct: 43 FSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTTLDIYSHVTNK 90 >gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii ATCC 43063] gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii ATCC 43063] Length = 222 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HTLRH F TH + DL ++Q +LGH+ +STTQ Y S M Sbjct: 166 TMHTLRHRFGTHAYAGDRDLVAVQRLLGHASVSTTQRYVEPPSDAM 211 >gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4] gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4] Length = 284 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FAT+ + G L +Q +LGH + TTQIYT++ + + +Y Sbjct: 231 HILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHLMTDDLKRVY 278 >gi|323974580|gb|EGB69703.1| phage integrase [Escherichia coli TW10509] Length = 166 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A +L G L+ +QS++GH +S+T++YT V Sbjct: 95 VPVTPHTFRHSYAMLMLYAGIPLKVLQSLMGHKSISSTEVYTKV 138 >gi|317474052|ref|ZP_07933331.1| tyrosine type site-specific recombinase [Bacteroides eggerthii 1_2_48FAA] gi|316909894|gb|EFV31569.1| tyrosine type site-specific recombinase [Bacteroides eggerthii 1_2_48FAA] Length = 63 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 36/55 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 M ++H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ Sbjct: 1 MLMSSHMGRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK 55 >gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602] gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH LRH+FATH + NGG++ ++Q +LGH+ + T Y Sbjct: 269 AAHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTYA 307 >gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 417 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412 >gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter hominis ATCC BAA-381] gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter hominis ATCC BAA-381] Length = 352 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L T++IYT+ +S+++ Sbjct: 296 AHMLRHTFATMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQKL 340 >gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 290 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S HTLRH +ATHLL G +LR IQ LGHS + TT +Y ++ K Sbjct: 229 SVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRK 273 >gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 337 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGHS + T IY Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYA 317 >gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1] gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1] Length = 256 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RHSFA L+ G L IQ++LGH+ +STT IY + S+ Sbjct: 205 TPHIFRHSFAVALIERGIPLNKIQALLGHANISTTSIYLKIASE 248 >gi|330997655|ref|ZP_08321500.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila YIT 11841] gi|329570183|gb|EGG51923.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila YIT 11841] Length = 68 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 34/44 (77%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT+ VN ++ Sbjct: 11 HCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQK 54 >gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546] gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546] Length = 342 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGGD+ +++ ILGH+ ++ T Y ++ +++ Sbjct: 269 VHVLRHTFASHFVMNGGDILTLKEILGHASINQTMTYAHLAPDHLID 315 >gi|270265399|ref|ZP_06193659.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270040654|gb|EFA13758.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 264 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RHS+A H++ G L+ +Q +LGH + +T++YT V Sbjct: 186 IPITPHVFRHSYAMHMIYQGTPLKVLQGLLGHEKPESTEVYTRV 229 >gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666] gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666] Length = 331 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHS A+HLLS G D+ ++++ LGH+ L TT +Y ++ + + S QK Sbjct: 254 SPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQK 313 Query: 64 DKK 66 K Sbjct: 314 SGK 316 >gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 343 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSF +H+ +G D R +Q I GH STT IYT+V + M Sbjct: 279 TPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFM 324 >gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8] gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8] gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] Length = 253 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RHSFA L+ G L IQ++LGH+ +STT IY + S+ Sbjct: 202 TPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245 >gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 364 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 29/42 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 S T H LRH+ ATHLL++G D+ +++ +LGH LST Y + Sbjct: 281 SVTPHGLRHTTATHLLADGTDMDAVRRVLGHGDLSTLGRYRD 322 >gi|116052949|ref|YP_793266.1| bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588170|gb|ABJ14185.1| possible bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 126 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +H LRH+FA+H + NGG++ + Q ILGHS L+ T Y ++ + E+ Sbjct: 58 SHVLRHTFASHFMMNGGNILTRQKILGHSSLTLTMRYAHLAPDFLQEV 105 >gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum ATCC 27405] gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20] gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20] gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313] Length = 330 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 36/47 (76%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + +G D+R++Q ILGH ++TT+IYT+V+S+++ Sbjct: 262 STHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYTHVDSQQL 308 >gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] Length = 356 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H LRH++AT L+S+G D +++ ILGH T +IY++VN M Sbjct: 298 SISLHELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVNDDMM 345 >gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens SM101] gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium perfringens SM101] Length = 450 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETL 437 >gi|303235421|ref|ZP_07322036.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|303237463|ref|ZP_07324028.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302482283|gb|EFL45313.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302484369|gb|EFL47349.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 102 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ + K+K Sbjct: 21 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEK 80 Query: 66 K 66 + Sbjct: 81 E 81 >gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2] gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2] Length = 404 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH+ AT LL NG +++ IQ LGHS+LSTT Y++V SK E D Sbjct: 348 HCLRHTHATLLLENGANVKYIQQRLGHSQLSTTMDTYSHVTSKMESETID 397 >gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 373 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSF +H+ +G D R +Q I GH STT IYT+V + M Sbjct: 309 TPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFM 354 >gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606] gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606] Length = 391 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +L+ G + S+ +LGHS ++TTQ+Y + +K++ Sbjct: 320 TFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 365 >gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 336 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T IY + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAH 318 >gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] Length = 324 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ AT + G D+R+IQSILGH+ ++TTQIYT+++ Sbjct: 264 TPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIYTHLD 306 >gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] Length = 406 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF + + G D+ IQ+ +GH ++TTQIY+ + +++M E+ D+ Sbjct: 347 TFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK 398 >gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 351 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGHS ++ T Y + Sbjct: 293 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAH 330 >gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 343 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTHPSITQ 62 + HT+RH+ ATHLL++G D+ ++++ LGH+ + TT IY ++ +++ + P++ Sbjct: 266 SPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKALKKCEFPNVKN 325 Query: 63 KDKK 66 ++K Sbjct: 326 PNRK 329 >gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1] gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1] Length = 304 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H +RHS+A+ L +LR +Q LGHS + TT+IY + + +Y Q P Sbjct: 242 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKRVYQQYFP 296 >gi|260590881|ref|ZP_05856339.1| integrase [Prevotella veroralis F0319] gi|260537172|gb|EEX19789.1| integrase [Prevotella veroralis F0319] Length = 112 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 48 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERIFRDVERIIPLIAQ 107 >gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] Length = 431 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS AT L G D+RS+Q+ILGH ++TT++YT+V+ + + + Sbjct: 373 TPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDDETLRNV 422 >gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 397 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +L+ G + S+ +LGHS ++TTQ+Y + +K++ Sbjct: 316 TFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 361 >gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter pylori Gambia94/24] Length = 356 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 31/47 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKE 348 >gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] Length = 342 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGGD+ +++ ILGH ++ T Y ++ +++ Sbjct: 269 VHVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTYAHLAPDHLVD 315 >gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2] Length = 338 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T IY + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKDILGHSDIKMTMIYAH 318 >gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 429 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH++AT L+NG D+ ++ +LGH +++TTQIY + Sbjct: 359 TFHCFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKI 399 >gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 275 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 30/42 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT+LL+ G DL+ I +GH+ L+TT+IY + S+ Sbjct: 223 HCCRHTFATNLLARGADLQFIADEMGHADLNTTRIYAQIPSE 264 >gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] Length = 400 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384 >gi|332829974|gb|EGK02602.1| hypothetical protein HMPREF9455_00852 [Dysgonomonas gadei ATCC BAA-286] Length = 409 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RHSFA+ + L G + +I +LGHS +STTQIY V K++ E D+ Sbjct: 345 TYHSGRHSFASLITLEEGVPIETISRMLGHSNISTTQIYARVTPKKLFEDMDK 397 >gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] Length = 400 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384 >gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87] gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87] Length = 414 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+FAT + L+NG + ++ +LGH++LSTTQIY V Sbjct: 344 HTARHTFATTITLANGVPIETVSKLLGHTKLSTTQIYARV 383 >gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 323 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA L NGGD ++ +LGH+ +ST IY + S + + Y P Sbjct: 258 SPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLRLFSDDLAKKYQGKSP 312 >gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] Length = 328 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA+H + NGG++ ++Q ILGHS L+ T Y Sbjct: 271 ASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYA 309 >gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] Length = 400 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384 >gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 383 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T HT RH+FAT +L+ G DL + +LGH+++ TT IY + K+ E Sbjct: 323 TITFHTARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKKDE 372 >gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT LS+G D+ ++ +LGH+ + TTQIY V Sbjct: 357 TFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKV 397 >gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735] gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735] Length = 418 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17] gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17] Length = 407 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ L TTQIY + +K++ Sbjct: 342 TFHMARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387 >gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41] gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+FA HL G L IQ +LGH +TQ+Y + + ++YD Sbjct: 226 VTPHMLRHTFAAHLAERGMPLECIQQLLGHETTHSTQLYARLYNHARKQMYD 277 >gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] Length = 322 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAH 304 >gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica WH47] Length = 301 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/32 (56%), Positives = 25/32 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 + T H+ RHSFATHL+ +G D+R IQ +LGH+ Sbjct: 269 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHT 300 >gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FAT L G L ++Q +LGHS + TTQIY +++ + + + Y Sbjct: 230 HVLRHTFATRALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEY 277 >gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] Length = 400 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384 >gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii] Length = 418 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 332 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FATH + NGG++ ++Q ILGHS + T Y Sbjct: 266 ASHALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNYA 304 >gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] Length = 284 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 34/51 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH +A +L+S G L IQ++LGH ++TT IYT + K ++ I ++T Sbjct: 229 HSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKKELVSIINRT 279 >gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 339 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 28/38 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T +Y++ Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYSH 319 >gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571] gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571] Length = 302 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRMMEIYDQTHP 58 T H +RHS+A+ L +LR +Q LGHS + TT++Y T+++ +R E+Y + P Sbjct: 244 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERR--EVYKKYFP 298 >gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23] gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23] Length = 390 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 335 HTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2] gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2] gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2] Length = 390 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 329 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ AT + G D+R++Q ILGH +STT+IYT+++ +++ E ++ HP Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVNK-HP 319 >gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33] gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33] gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33] gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33] Length = 385 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RHSFA + L+ G D+ S+ +LGHS L TT+IY ++ +R Sbjct: 324 VTFHAGRHSFAVNQLARGLDIYSLSRLLGHSELKTTEIYADILDQR 369 >gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043] gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043] gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043] gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 366 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH A+HL G L++IQ ++GHS LSTT Y +V+S + Sbjct: 297 TPHVLRHYCASHLYQQGMSLKAIQELMGHSWLSTTTQYIHVHSTHI 342 >gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 400 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHV 384 >gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320] gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320] Length = 327 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG + ++Q ILGH+ L T Y Sbjct: 269 HVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYA 305 >gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori J99] gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori J99] Length = 356 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 31/47 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKE 348 >gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574] gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574] Length = 418 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 390 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002] gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002] Length = 330 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH L+ T Y ++ + E Sbjct: 275 HVLRHTFASHFVMNGGNILVLQKILGHQSLTMTIRYAHLAPDHLQE 320 >gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae] Length = 304 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/30 (66%), Positives = 25/30 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 T HTLRHSFAT LL +G D+R++Q +LGHS Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHS 304 >gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa] Length = 305 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/30 (66%), Positives = 25/30 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 T HTLRHSFAT LL +G D+R++Q +LGHS Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLLGHS 304 >gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 334 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGH+R+ T Y Sbjct: 280 HALRHTFASHFMMNGGNILVLKEILGHARIEETMKYA 316 >gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 414 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 343 TFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKI 388 >gi|294340302|emb|CAZ88679.1| putative Phage integrase [Thiomonas sp. 3As] Length = 410 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ A+ LL+ GG L+ + +L H L T+ IY V+ R++ + Sbjct: 352 TRVHILRHTLASRLLNTGGTLKEVADVLRHRELDTSLIYAKVDFGRLLAV 401 >gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.] Length = 417 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + LSNG + ++ +LGH++LSTTQIY V +++ Sbjct: 347 TFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIEQKV 393 >gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01] gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01] Length = 312 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 29/40 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 AH LRH+FA+H + NGG++ ++Q I GHS L+ T Y ++ Sbjct: 258 AHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMRYAHL 297 >gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] Length = 371 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H++RHS+AT L ++++QS++GHS + TT IYT+V + MEI D+ Sbjct: 317 HSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQDKKMEIIDK 367 >gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2] gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10] gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2] gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10] Length = 253 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RHSFA L+ G L IQ++LGH+ +STT IY + S+ Sbjct: 202 TPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245 >gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1] gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRMMEIYDQTHPSIT 61 T H +RHS+A+ L +LR +Q LGH+ + TT++Y T+V+ +R ++Y + P +T Sbjct: 225 TPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTDVDERR--QVYREFFPLVT 282 >gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36] Length = 396 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNV 372 >gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18] gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18] Length = 431 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ + KDK Sbjct: 350 HVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIAKQSAKDK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259] gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259] Length = 407 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ L TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387 >gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31] gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31] Length = 328 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L NG D+ I+ LGHS T++Y NV S K+++E Sbjct: 268 SPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINVRSVLEKKVLE 318 >gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 370 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H++RHS+AT L ++++QS++GHS +STT IYT+V + +EI D+ Sbjct: 316 HSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEILDK 366 >gi|254245075|ref|ZP_04938397.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192] gi|126198453|gb|EAZ62516.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192] Length = 178 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA+H + NGG++ ++Q ILGHS L+ T Y Sbjct: 121 ASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYA 159 >gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LSNG L ++ +LGH+ ++TTQIY + K++++ Sbjct: 348 TFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLD 396 >gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] Length = 405 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RHSFA ++L+NG +++++ S+LGHS L T+ YT Sbjct: 348 TWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 386 >gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149] gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149] Length = 408 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 +AH LRH+F T L N +L+ IQSI+GHS ++TT +Y ++ EI Sbjct: 349 SAHHLRHTFCTRLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKKQEI 398 >gi|325965567|ref|YP_004243471.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471654|gb|ADX75337.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 131 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 29/41 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS+ THL+ G D +Q+ +GHS STT +YT+V+S Sbjct: 68 HCLRHSYVTHLIEAGYDAAFVQTQVGHSYASTTGLYTSVSS 108 >gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703] gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703] Length = 327 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H LRH+FA+H + NGG+L ++Q ILGH+ + T Y ++ Sbjct: 267 ASHILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAHL 307 >gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70] gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%) Query: 4 TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ K+ +E ++ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299 >gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627] gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627] gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 330 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + +++ Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLLD 313 >gi|298674433|ref|YP_003726183.1| integrase family protein [Methanohalobium evestigatum Z-7303] gi|298287421|gb|ADI73387.1| integrase family protein [Methanohalobium evestigatum Z-7303] Length = 282 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH RH A + + NG D+R++Q LGH+ L+TT IY ++YD+ Sbjct: 192 SAHKFRHGHAIYCIQNGMDIRTLQLQLGHTDLATTAIYLQFAIDDRTKVYDK 243 >gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492] gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492] gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 396 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNV 372 >gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%) Query: 4 TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ K+ +E ++ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299 >gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C] gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C] Length = 356 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L NG D+ +IQ ILGH L+TT IY +V + + + Sbjct: 292 TPHVLRHFAASDLYRNGMDVVAIQEILGHEWLNTTMIYVHVEKSHVEDAW 341 >gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ + +R+ Sbjct: 299 AHMLRHTFATLLYQKNRDLILVQEALGHADLNTSRIYTHFDKERL 343 >gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] Length = 311 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S +AH LRH+ A+H L+NG ++ ++ LGH+ +STT Y N +Y Sbjct: 257 SVSAHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLY 308 >gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%) Query: 4 TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ K+ +E ++ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299 >gi|116687268|ref|YP_840514.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652983|gb|ABK13621.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 618 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 ST+ H RH+ T +L+ G L +Q LGH+ L TT IY + RM + H + Sbjct: 552 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLA 611 Query: 62 QKD 64 + + Sbjct: 612 RDN 614 >gi|332876837|ref|ZP_08444592.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685202|gb|EGJ58044.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 372 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ Sbjct: 313 TFHCTRHSFGSLHVEMGTDMAVIQACLGHKNITTTQIYSKMAAQQMCDVVDK 364 >gi|254438028|ref|ZP_05051522.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307] gi|198253474|gb|EDY77788.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307] Length = 103 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRHS A H L GD+R + LGH+ + TT++Y + + I D H Sbjct: 16 VTPHVLRHSCAMHTLQATGDVRKVALWLGHASIQTTEMYLRADPTEKLAILDAHH 70 >gi|103485931|ref|YP_615492.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98976008|gb|ABF52159.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 515 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T +H RHS AT+LL G L S+ +IL HS TT IY V+ +M+I Sbjct: 456 TGSHIFRHSLATNLLRAGAGLESVGTILRHSSPETTAIYAKVDLPMLMKI 505 >gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 414 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 343 TFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKI 388 >gi|300946488|ref|ZP_07160757.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] gi|300453832|gb|EFK17452.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] Length = 246 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 173 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 215 >gi|269468487|gb|EEZ80148.1| integrase [uncultured SUP05 cluster bacterium] Length = 116 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 32/47 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGGD+ S+Q +L HS L+ T Y +++ + ++ Sbjct: 63 HILRHTFASHFIMNGGDVLSLQKVLNHSTLTMTIKYAHLSPDHLNDV 109 >gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter pullorum MIT 98-5489] gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter pullorum MIT 98-5489] Length = 353 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 30/45 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHSFAT L DL +Q LGH+ L T++IYT+ + +++ Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYTHFDKQKL 346 >gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] Length = 338 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +++ ILGHS L+ T Y +++ + + + Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRD 318 >gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1] gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 338 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +++ ILGHS L+ T Y +++ + + + Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRD 318 >gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 312 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 29/42 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FAT L GGD S+Q ILGH+ L T++Y+++ S Sbjct: 248 PHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289 >gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 432 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HT RH+FAT +L+ G DL + +LGH+ + TQ+Y + +K+ E Sbjct: 377 HTSRHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINKKKDE 422 >gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c] gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c] Length = 292 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT+RHS+A+ L +LR +Q LGHS + TT+IY + + +Y P Sbjct: 227 GVTPHTIRHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGVYRTYFPLSK 286 Query: 62 QKD 64 Q D Sbjct: 287 QDD 289 >gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16] Length = 301 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%) Query: 4 TAHTLRHSFATHLLSNGG---DLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ K+ +E ++ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETFN 299 >gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218] Length = 334 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAH 304 >gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23] gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 381 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RHSFAT +L+ G + ++ +LGH ++TTQIY + K + + ++ P++ Sbjct: 322 EVTCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKNVEDSVNEILPTL 380 >gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 287 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+FAT +L G DL+S+ ILGH + TT Y + N + + + Y Sbjct: 232 TPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKEALQKEY 281 >gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter fetus subsp. fetus 82-40] gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter fetus subsp. fetus 82-40] Length = 354 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 341 >gi|307565175|ref|ZP_07627678.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346119|gb|EFN91453.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 247 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K+K Sbjct: 158 HMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDRLIAKHQEKNK 217 Query: 66 KN 67 +N Sbjct: 218 EN 219 >gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ + +Q Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQ 393 >gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 355 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K+K Sbjct: 266 HMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEKNK 325 Query: 66 KN 67 +N Sbjct: 326 EN 327 >gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S + H LRH+ A HLL G ++ I+ ILGH+ + TTQIY + N++ Sbjct: 257 SISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANTQ 302 >gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides vulgatus PC510] gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides vulgatus PC510] Length = 341 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H+ RHS A HLL +L I+ LGH +TT+IY + K+ +E + +P I ++ Sbjct: 261 CHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYARASEKKKLEALSRVNPGIIKEG 320 Query: 65 K 65 K Sbjct: 321 K 321 >gi|319954949|ref|YP_004166216.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423609|gb|ADV50718.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 212 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 HTLRHS +L + G DLR IQ LGH T YT V SKR +++D Sbjct: 164 HTLRHSCGFYLANKGYDLRLIQDYLGHRDPKHTAHYTRVVSKRFEKLWD 212 >gi|293569425|ref|ZP_06680722.1| putative integrase/recombinase [Enterococcus faecium E1071] gi|291587951|gb|EFF19802.1| putative integrase/recombinase [Enterococcus faecium E1071] Length = 201 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H+ RH FA L+ NG D+ IQ +LGH+ + TT++Y Sbjct: 139 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 179 >gi|189010585|ref|ZP_02808040.2| resolvase [Escherichia coli O157:H7 str. EC4076] gi|189402414|ref|ZP_02782304.2| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189403253|ref|ZP_02794354.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189403269|ref|ZP_02794244.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189404239|ref|ZP_02787990.2| resolvase [Escherichia coli O157:H7 str. EC4501] gi|189405344|ref|ZP_02814942.2| resolvase [Escherichia coli O157:H7 str. EC869] gi|188999522|gb|EDU68508.1| resolvase [Escherichia coli O157:H7 str. EC4076] gi|189355637|gb|EDU74056.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189361655|gb|EDU80074.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189361705|gb|EDU80124.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189366764|gb|EDU85180.1| resolvase [Escherichia coli O157:H7 str. EC4501] gi|189370537|gb|EDU88953.1| resolvase [Escherichia coli O157:H7 str. EC869] Length = 256 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 188 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 228 >gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1] gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1] Length = 195 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55 T HTLRHS+AT +L G +L+ +Q LGH L T++Y T + +R +I Q Sbjct: 129 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 183 >gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] Length = 401 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L++NG L ++Q +LGH+++ TTQ Y ++ + ++++ Sbjct: 329 HDLRHTFASLLVNNGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDV 375 >gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 335 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFA+H + NGG++ +Q ILGHS ++ T Y Sbjct: 276 HVLRHSFASHFMMNGGNILVLQQILGHSTITMTMRYA 312 >gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1] gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1] Length = 322 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 31/58 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH+FA+HL L +IQ +LGH TT Y ++ + + DQ HP Sbjct: 254 LRLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFHEDSRALVDQHHP 311 >gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80] gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80] Length = 348 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 34/54 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 AH LRH F T L + IQ+++GH+ T++IY++++ ++M + D+ +P Sbjct: 274 AHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSHISMRKMTHVLDKGNP 327 >gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 329 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LRH+FATH + NGG + ++Q ILGHS L T Y Sbjct: 264 LGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYA 305 >gi|239623220|ref|ZP_04666251.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522186|gb|EEQ62052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 284 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH FA + + NGGD+ + ++LGH + +T+IY S +I++Q Sbjct: 231 HSFRHRFAKNFIENGGDIAFLSNLLGHDSIESTRIYLRRTSTEQAQIFNQV 281 >gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456] gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456] Length = 406 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L ++Q +LGH + TQ+Y ++ ++ + +Y Q Sbjct: 249 HVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQ 298 >gi|209395650|ref|YP_002268540.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|209162421|gb|ACI39853.1| resolvase [Escherichia coli O157:H7 str. EC4115] Length = 271 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243 >gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 317 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q LGH L+ T Y +++ + + E Sbjct: 245 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 290 >gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] Length = 328 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG + ++Q ILGHS L T Y Sbjct: 269 HALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYA 305 >gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 221 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/41 (51%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRH+FAT L DLR +Q LGHS + TT IYT++ Sbjct: 165 SPHVLRHTFATELYRMTNDLRKVQKTLGHSSIQTTMIYTHL 205 >gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 431 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V +++ E D+ K+K Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQVAKEK 409 >gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586] gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586] Length = 363 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1] gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1] Length = 285 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 26/39 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH LRHSF T+LL G + SIQ +LGH+ L+ T Y Sbjct: 232 VSAHILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRY 270 >gi|313887048|ref|ZP_07820747.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312923459|gb|EFR34269.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 398 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME----IYDQTHP 58 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E + D+ H Sbjct: 319 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHS 378 Query: 59 -------SITQKDK 65 SI Q+DK Sbjct: 379 AFEGYCESIAQQDK 392 >gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 419 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH++AT LSNG DL ++ +LGH+ + TTQ YT V Sbjct: 359 TFHCFRHTYATLQLSNGTDLFTVSKMLGHTNVRTTQRYTKV 399 >gi|237737268|ref|ZP_04567749.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229421130|gb|EEO36177.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 325 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L NG D+ I+ LGHS T+IY N S KR++E Sbjct: 267 SPHNIRHAVATELSLNGADILEIRDFLGHSDTRVTEIYINAKSVLEKRVLE 317 >gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium botulinum B1 str. Okra] gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 354 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T H LRH++AT L++NG D ++ ILGHS T + Y++VN+ Sbjct: 296 TITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLKTYSHVNN 340 >gi|146295078|ref|YP_001185502.1| phage integrase family protein [Shewanella putrefaciens CN-32] gi|145566768|gb|ABP77703.1| phage integrase family protein [Shewanella putrefaciens CN-32] Length = 389 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + L+ G D+ S+ +LGHS L TT+IY ++ R E +T P I Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383 >gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 439 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K+K Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEKNK 409 Query: 66 KN 67 +N Sbjct: 410 EN 411 >gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7] gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7] Length = 332 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILALQRILGHSSITMTMRYAHLSPEHL 312 >gi|319428591|gb|ADV56665.1| integrase family protein [Shewanella putrefaciens 200] Length = 389 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + L+ G D+ S+ +LGHS L TT+IY ++ R E +T P I Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383 >gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 388 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H+ RH+ A LL NG D+ ++ LGH + TT+IY + K+M E Sbjct: 324 TFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAKIIDKKMKE 371 >gi|297581963|ref|ZP_06943883.1| site-specific recombinase XerD [Vibrio cholerae RC385] gi|297533830|gb|EFH72671.1| site-specific recombinase XerD [Vibrio cholerae RC385] Length = 389 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + L+ G D+ S+ +LGHS L TT+IY ++ R E +T P I Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383 >gi|283797039|ref|ZP_06346192.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075455|gb|EFE12819.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291528287|emb|CBK93873.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] gi|291534519|emb|CBL07631.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 432 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + N Sbjct: 375 HTLRHTYTTNLLSNGAAPKDVQELLGHSDVSTTMNVYAHAN 415 >gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697] gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697] Length = 385 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV Sbjct: 334 HTARHTNATLLIYNGINITTVQKLLGHKSVKTTQVYTNV 372 >gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] Length = 376 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 366 >gi|168758775|ref|ZP_02783782.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|168771432|ref|ZP_02796439.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189354463|gb|EDU72882.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189359798|gb|EDU78217.1| resolvase [Escherichia coli O157:H7 str. EC4486] Length = 271 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243 >gi|162958004|ref|YP_001621436.1| Int2 [Serratia entomophila] gi|155382591|gb|ABU23786.1| Int2 [Serratia entomophila] Length = 236 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HT RHSFA HLL N + +QS +GH +T+IYT V Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208 >gi|282890473|ref|ZP_06298996.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499470|gb|EFB41766.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 167 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 30/42 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HT+RH+ ATHLL G D+ +I++ LGH ++TT IY V+ Sbjct: 91 SPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVD 132 >gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 292 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT ++++G L S+Q +LGH L+TT++YT+ +++ +Y + HP Sbjct: 236 TPHVLRHTFATAMMNHGAGLESVQQLLGHQSLTTTEVYTHTTFEQLKRVYMKAHP 290 >gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12] gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12] gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 376 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 366 >gi|153830812|ref|ZP_01983479.1| integrase [Vibrio cholerae 623-39] gi|148873696|gb|EDL71831.1| integrase [Vibrio cholerae 623-39] Length = 392 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + L+ G D+ S+ +LGHS L TT+IY ++ R E +T P I Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383 >gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826] gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 353 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 341 >gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus 13826] gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 354 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 341 >gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2] Length = 289 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 32/45 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + ++ Sbjct: 225 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLV 269 >gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1] gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1] Length = 286 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT + G L ++Q +LGH + TTQIYT++ + +M+ Y + Sbjct: 230 HILRHTFATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHLVLEDLMQAYKK 279 >gi|323344118|ref|ZP_08084344.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] gi|323094847|gb|EFZ37422.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] Length = 70 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 M H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 1 MDDIFHVARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 49 >gi|268526582|gb|ACZ05623.1| Int2 [Serratia proteamaculans] Length = 236 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HT RHSFA HLL N + +QS +GH +T+IYT V Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208 >gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] Length = 381 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 326 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368 >gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct] Length = 328 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + NGG + ++Q ILGH+ LS T Y +++ + E Sbjct: 271 ASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSE 318 >gi|301060695|ref|ZP_07201510.1| tyrosine recombinase XerC family protein [delta proteobacterium NaphS2] gi|300445092|gb|EFK09042.1| tyrosine recombinase XerC family protein [delta proteobacterium NaphS2] Length = 85 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 30/43 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H+LRHS+ATH+L G DL +Q ILGH + TT YT++ S Sbjct: 18 SCHSLRHSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTS 60 >gi|288927218|ref|ZP_06421085.1| integrase [Prevotella buccae D17] gi|288336012|gb|EFC74426.1| integrase [Prevotella buccae D17] Length = 116 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 48 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 93 >gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 325 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 30/39 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ +++ ILGH+ ++ T +Y ++ Sbjct: 268 HVLRHTFASHFVMNGGNIVALKEILGHASINQTMVYAHL 306 >gi|193071780|ref|ZP_03052675.1| Int2 [Escherichia coli E110019] gi|192954916|gb|EDV85424.1| Int2 [Escherichia coli E110019] Length = 246 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 173 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 215 >gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1] gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1] Length = 327 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + NGG + ++Q ILGH+ LS T Y +++ + E Sbjct: 271 ASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSE 318 >gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 385 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+FAT L+ GGDL ++ +LGH+ + +TQ+Y +V Sbjct: 329 HTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADV 367 >gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 334 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRHS A H L GD+R + LGH+ + TT++Y + + + + H + Q Sbjct: 254 TPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRADPTEKLALLEAHHAPLIQP 313 Query: 64 DK 65 K Sbjct: 314 GK 315 >gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] Length = 357 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT L+SNG D ++ ILGH+ T +IY++V M Sbjct: 301 TMHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTDDMM 346 >gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 431 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 346 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHPSITQ 62 H LRH+FAT L G DL +Q +LGH + TQ Y + + + + E I ++ HP I+Q Sbjct: 271 HDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAHHSPESLREGVLILERIHPEISQ 330 >gi|228470635|ref|ZP_04055491.1| putative integrase [Porphyromonas uenonis 60-3] gi|228307643|gb|EEK16622.1| putative integrase [Porphyromonas uenonis 60-3] Length = 423 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME----IYDQTHP 58 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E + D+ H Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHS 403 Query: 59 -------SITQKDK 65 SI Q+DK Sbjct: 404 AFEGYCESIAQQDK 417 >gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC 43183] gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC 43183] gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC 43183] gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC 43183] Length = 401 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 393 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ Sbjct: 334 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18] gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735] gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18] gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735] Length = 403 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +L+ G + S+ +LGH+ ++TTQ+Y + +K++ Sbjct: 316 TFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 361 >gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis RM3268] gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis RM3268] Length = 186 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 130 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 174 >gi|238753673|ref|ZP_04615035.1| Integrase [Yersinia ruckeri ATCC 29473] gi|238708225|gb|EEQ00581.1| Integrase [Yersinia ruckeri ATCC 29473] Length = 95 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGHS + T Y ++ Sbjct: 40 HALRHTFASHFMMNGGNILTLQKILGHSNILQTMTYAHL 78 >gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a] gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a] Length = 338 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T +Y + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAH 319 >gi|194435212|ref|ZP_03067439.1| resolvase [Shigella dysenteriae 1012] gi|194416535|gb|EDX32677.1| resolvase [Shigella dysenteriae 1012] Length = 274 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243 >gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] Length = 381 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 326 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368 >gi|159039274|ref|YP_001538527.1| integrase family protein [Salinispora arenicola CNS-205] gi|159039325|ref|YP_001538578.1| integrase family protein [Salinispora arenicola CNS-205] gi|157918109|gb|ABV99536.1| integrase family protein [Salinispora arenicola CNS-205] gi|157918160|gb|ABV99587.1| integrase family protein [Salinispora arenicola CNS-205] Length = 445 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+ AT LL+ G D+R +Q +LGHS + T+ YT+V SK Sbjct: 384 HDGRHTAATLLLAQGVDIRVVQELLGHSSIKVTEGYTHVASK 425 >gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 428 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +L+ G + S+ +LGH+ ++TTQ+Y + +K++ Sbjct: 341 TFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386 >gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 402 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 347 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 389 >gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302] gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302] Length = 428 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 32/46 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +L+ G + S+ +LGH+ ++TTQ+Y + +K++ Sbjct: 341 TFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386 >gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] Length = 267 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 212 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 253 >gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 416 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS A+ LL +G L+ I +L H L+T+ +Y V++ R+ + Sbjct: 358 TRPHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLAAV 407 >gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302] gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302] Length = 410 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319] gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319] Length = 434 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V K++ E D+ T K K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDKKISEDMDRLIAKQTVKGK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922] gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922] Length = 416 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT LS G L S+ +LGH ++TTQIY + Sbjct: 348 VTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKI 389 >gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] Length = 301 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H RH+FAT L++G D+R++Q++LGH+ + TT YT+ + M + Sbjct: 243 SPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTHPDLAMMAQ 290 >gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1] Length = 465 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+ L+++G + + +LGHS+L TTQ Y+++++ ++ D Sbjct: 412 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 460 >gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] Length = 302 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYD 54 T H RHS AT L+ G D+R +Q++LGH+ L TT+IY V++ +R +E D Sbjct: 242 TPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERAD 295 >gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 417 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + LSNG + ++ +LGHS+++TTQIY V Sbjct: 348 TFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYARV 389 >gi|283488406|ref|YP_003368522.1| resolvase [Citrobacter rodentium ICC168] gi|282952113|emb|CBG91843.1| resolvase [Citrobacter rodentium ICC168] Length = 274 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243 >gi|187776297|ref|ZP_02801730.2| resolvase [Escherichia coli O157:H7 str. EC4196] gi|188025300|ref|ZP_02777528.2| resolvase [Escherichia coli O157:H7 str. EC4113] gi|187767942|gb|EDU31786.1| resolvase [Escherichia coli O157:H7 str. EC4196] gi|188013658|gb|EDU51780.1| resolvase [Escherichia coli O157:H7 str. EC4113] Length = 252 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 184 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 224 >gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] Length = 386 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+FA +L G D+ ++ +LGH LSTTQIY V K + P+I + Sbjct: 324 TFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQKAVSSI-PNILEN 382 Query: 64 DKKN 67 + K+ Sbjct: 383 ENKS 386 >gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 359 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E Sbjct: 302 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 349 >gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 376 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDE 366 >gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC 43183] gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC 43183] Length = 352 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ Sbjct: 285 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 323 >gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda] gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda] Length = 363 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LR +FAT +L NG DL +++ +GH+ ++TTQ Y +R+ + D+ Sbjct: 308 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 359 >gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937] gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937] Length = 363 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 410 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|229520176|ref|ZP_04409603.1| integrase [Vibrio cholerae TM 11079-80] gi|229342770|gb|EEO07761.1| integrase [Vibrio cholerae TM 11079-80] Length = 389 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + L+ G D+ S+ +LGHS L TT+IY ++ R E +T P I Sbjct: 327 VTFHAGRHTFAVNQLARGLDIYSLSRLLGHSELRTTEIYADILETRRTEAM-RTFPDI 383 >gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] Length = 429 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT LS G D+ ++ +LGHS+++TTQ+Y V Sbjct: 360 TFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVYAKV 400 >gi|223369868|gb|ACM88802.1| integrase [uncultured bacterium] Length = 163 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLR SF HLL NG ++ ++Q +LG +STT IYT+V Sbjct: 122 SCHTLRLSFPPHLLKNGYNIPTVQELLGIKDVSTTMIYTHV 162 >gi|139438892|ref|ZP_01772352.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC 25986] gi|133775603|gb|EBA39423.1| Hypothetical protein COLAER_01356 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHS-RLSTTQIYTNV 44 T H LRH+FAT + GGD++++QSILGH ++T +Y ++ Sbjct: 122 TFHGLRHTFATQWIRQGGDIKALQSILGHKDAMATLSVYADI 163 >gi|293397378|ref|ZP_06641633.1| resolvase [Serratia odorifera DSM 4582] gi|291420113|gb|EFE93387.1| resolvase [Serratia odorifera DSM 4582] Length = 270 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RHS+A H+L G L+ +Q ++GH + +T++YT V Sbjct: 190 VPVTPHVFRHSYAMHMLYQGTPLKVLQGLMGHEKGESTEVYTRV 233 >gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6] gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6] Length = 381 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 326 HTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKK 368 >gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555] gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555] Length = 287 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 26/40 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +AH LRHSFA+ L+ +L IQ +LGHS L T IYT Sbjct: 234 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYT 273 >gi|146301384|ref|YP_001195975.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155802|gb|ABQ06656.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHS A HL N + I+S LGH++++TT IY N KR Sbjct: 255 TLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKKR 299 >gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 210 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRHS+A L DLR++Q LGH+ + TTQIY +V + + + Sbjct: 157 SVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIYADVTKEDIQQ 204 >gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032] gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032] Length = 339 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLKEILGHADIKMTMIYAH 319 >gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] Length = 293 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FAT +L++ +L +++ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATSMLNHQAELEAVKELLGHESLTTTEVYTHTTFEELKQVYEQAHP 291 >gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT LS+G D+ ++ +LGH+ + TTQIY V Sbjct: 357 TFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKV 397 >gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1] gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1] Length = 153 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHS+AT L+ N DLR+ Q ++GHS + +T IY+++ Sbjct: 94 TPHVLRHSYATRLMENDVDLRTTQILMGHSSIKSTLIYSHL 134 >gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016] gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 26/40 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +AH LRHSFA+ L+ +L IQ +LGHS L T IYT Sbjct: 240 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYT 279 >gi|282878603|ref|ZP_06287379.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281299274|gb|EFA91667.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 423 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 12/74 (16%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME----IYDQTHP 58 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E + D+ H Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIDTTQIYGKITDHKIQEDMTALTDREHS 403 Query: 59 -------SITQKDK 65 SI Q+DK Sbjct: 404 AFEGYCESIAQQDK 417 >gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1] gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1] Length = 349 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RHS A H+L G L I++ LGH+ + TT IY NV Sbjct: 265 TPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTIYANV 305 >gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium difficile QCD-66c26] gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium difficile CIP 107932] gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium difficile ATCC 43255] gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium difficile QCD-76w55] gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium difficile QCD-97b34] gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium difficile QCD-37x79] gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium difficile CD196] gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase family protein [Clostridium difficile QCD-32g58] gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile CD196] gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] Length = 376 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H+LRH+ AT LL NG +++ IQ+ LGHS+LSTT Y++V K E D Sbjct: 320 HSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMKNETVD 369 >gi|282892377|ref|ZP_06300731.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497832|gb|EFB40192.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 119 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HT+RH+ ATHLL G D+ +I++ LGH ++TT IY V+ Sbjct: 51 VSPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVD 93 >gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503] gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7] gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13] gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19] gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503] gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13] gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19] Length = 392 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TT+IY+N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373 >gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574] gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574] Length = 438 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418 >gi|301165214|emb|CBW24785.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 431 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V +K Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNK 390 >gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B] gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3] gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B] gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3] Length = 392 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TT+IY+N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNI 373 >gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82] gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010] Length = 338 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T +Y + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAH 319 >gi|91775667|ref|YP_545423.1| phage integrase [Methylobacillus flagellatus KT] gi|91709654|gb|ABE49582.1| phage integrase [Methylobacillus flagellatus KT] Length = 121 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + NGG++ +Q +LGHS L+ T Y ++ + E Sbjct: 62 SHVLRHTFASHFMMNGGNILVLQRLLGHSTLTMTMRYAHMAPDHLQE 108 >gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021] gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021] gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021] gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021] Length = 329 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRHS A H+L D+R + LGH+ L +T+IY + +E+ D P Sbjct: 252 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDALAP 308 >gi|323943751|gb|EGB39849.1| phage integrase site-specific recombinase [Escherichia coli H120] Length = 103 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 45 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 83 >gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter upsaliensis JV21] gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter upsaliensis JV21] Length = 355 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 32/45 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S+++ Sbjct: 298 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKL 342 >gi|188591566|ref|YP_001796165.1| Phage integrase [Cupriavidus taiwanensis] gi|170938961|emb|CAP63968.1| Phage integrase [Cupriavidus taiwanensis LMG 19424] Length = 616 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FATH ++N +Q +LGH+ L TT +Y R + + PS Sbjct: 563 HALRHTFATHAVANEMPADVLQRLLGHASLQTTSLYVRAERARGLAAVSKLFPS 616 >gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] Length = 285 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/39 (56%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T+AH LRH+ ATH L NG D+ +Q LGHS ++TTQ Y Sbjct: 229 TSAHWLRHAHATHSLENGCDISLLQQSLGHSDITTTQRY 267 >gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 327 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ + + S Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRDAVSKNPLSELN 322 Query: 63 KDKKN 67 D KN Sbjct: 323 IDNKN 327 >gi|298484397|ref|ZP_07002556.1| integrase [Bacteroides sp. D22] gi|298269461|gb|EFI11063.1| integrase [Bacteroides sp. D22] Length = 431 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V +K Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNK 390 >gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319] gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319] Length = 438 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418 >gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259] gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259] Length = 438 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418 >gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236] gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236] Length = 284 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHL 264 >gi|195940604|ref|ZP_03085986.1| resolvase [Escherichia coli O157:H7 str. EC4024] Length = 241 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 173 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 213 >gi|38637707|ref|NP_942681.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16] gi|32527045|gb|AAP85795.1| Orf2/integrase/recombinase fusion protein [Ralstonia eutropha H16] Length = 875 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +T AH RH A +LS+G L I +LGH TT+IYT V+ K + Sbjct: 816 TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL 863 >gi|10955295|ref|NP_052636.1| resolvase [Escherichia coli O157:H7 str. Sakai] gi|75994510|ref|YP_325624.1| resolvase [Escherichia coli O157:H7 EDL933] gi|149930783|ref|YP_001294712.1| w0048 [Escherichia coli] gi|168803077|ref|ZP_02828084.1| resolvase [Escherichia coli O157:H7 str. EC508] gi|208811330|ref|ZP_03253090.1| resolvase [Escherichia coli O157:H7 str. EC4206] gi|208817399|ref|ZP_03258428.1| resolvase [Escherichia coli O157:H7 str. EC4045] gi|208823403|ref|ZP_03263720.1| resolvase [Escherichia coli O157:H7 str. EC4042] gi|209395611|ref|YP_002268421.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|217329834|ref|ZP_03445909.1| resolvase [Escherichia coli O157:H7 str. TW14588] gi|254667484|ref|YP_003082170.1| resolvase [Escherichia coli O157:H7 str. TW14359] gi|261225662|ref|ZP_05939943.1| resolvase [Escherichia coli O157:H7 str. FRIK2000] gi|261257882|ref|ZP_05950415.1| resolvase [Escherichia coli O157:H7 str. FRIK966] gi|37695771|gb|AAR00433.1|AF401292_34 w0048 [Escherichia coli] gi|3337027|dbj|BAA31786.1| resolvase [Escherichia coli O157:H7 str. Sakai] gi|3822178|gb|AAC70132.1| resolvase (protein d) [Escherichia coli O157:H7] gi|17384578|emb|CAC79982.1| orf807 [Escherichia coli] gi|189375194|gb|EDU93610.1| resolvase [Escherichia coli O157:H7 str. EC508] gi|208729960|gb|EDZ79177.1| resolvase [Escherichia coli O157:H7 str. EC4206] gi|208730576|gb|EDZ79275.1| resolvase [Escherichia coli O157:H7 str. EC4045] gi|208736998|gb|EDZ84683.1| resolvase [Escherichia coli O157:H7 str. EC4042] gi|209157066|gb|ACI34500.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|217317065|gb|EEC25498.1| resolvase [Escherichia coli O157:H7 str. TW14588] gi|254595836|gb|ACT75196.1| resolvase [Escherichia coli O157:H7 str. TW14359] Length = 268 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 200 TPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 240 >gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 297 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ AT LS+G +LR IQ +LGH+ TT Y V K++++ Sbjct: 241 HKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLK 286 >gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4] gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4] Length = 343 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRHSFA+H + NGG++ ++ ILGH+ +S T Y Sbjct: 286 ASHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYA 324 >gi|149184912|ref|ZP_01863229.1| phage integrase [Erythrobacter sp. SD-21] gi|148831023|gb|EDL49457.1| phage integrase [Erythrobacter sp. SD-21] Length = 384 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T +H RHS AT++L +G L SI +IL HS TT IY + +++I Sbjct: 324 LPTGSHIFRHSLATNMLRSGAGLESIGTILRHSSPETTAIYAKTDLPMLLKI 375 >gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 336 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RHS A HL++ G D+ I+S LGH++L TT Y N + + +Q P + Sbjct: 259 TPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKL 315 >gi|323974160|gb|EGB69293.1| phage integrase [Escherichia coli TW10509] Length = 274 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RHS+A HL +G R +QS+LGH +T+IYT V S Sbjct: 201 TPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFS 243 >gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 664 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 TAH LRH+ +HL +G L +Q +LGH+ L TT IYT+ + + + Sbjct: 602 TAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYTDTSDENL 647 >gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT LS G L S+ +LGH ++TTQIY + Sbjct: 348 VTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKI 389 >gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] Length = 385 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 27/33 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+ AT LL NG +++ IQ+ LGHSR++TT Sbjct: 323 HSLRHTHATMLLENGANIKDIQARLGHSRIATT 355 >gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT ++ G D+R Q +LGH+ TT+IY +V + + + Sbjct: 134 HMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQ 179 >gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 284 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHL 264 >gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2] gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2] Length = 395 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LLS G + SI ++GH+ +STTQ+Y V ++ E D+ Sbjct: 338 HQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKVTDMKISEDMDK 387 >gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 405 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ S+Q LGH L+ T Y +++ + E Sbjct: 277 HVLRHTFASHFMMNGGNILSLQRALGHHSLTMTMRYAHLSPDHLAE 322 >gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHMARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2] Length = 328 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +H LRH+FA+H + NGG + ++Q ILGH+ LS T Y +++ Sbjct: 271 ASHVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLS 312 >gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1] Length = 333 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 312 >gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] Length = 372 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFA HLL G D++ ++ ++GH+ + TT+ Y ++ Sbjct: 312 HLLRHSFAPHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350 >gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08] Length = 342 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+FAT LS+G D+ ++ ++GH +L TTQIY V ++ + D Sbjct: 287 HVSRHTFATLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVD 335 >gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36] Length = 343 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H++RHS A HLL G +L I+ ILGH + TT IY +SK E + + +T Sbjct: 262 SCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREALENAYTRLT 319 >gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608] gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608] Length = 407 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14] gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14] Length = 431 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAKEK 409 >gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 345 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 30/40 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+HL+ NG DL+++Q +LGH + T Y++++ Sbjct: 279 HDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHLS 318 >gi|38637799|ref|NP_942773.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527137|gb|AAP85887.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 412 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +T AH RH A +LS+G L I +LGH TT+IYT V+ K + Sbjct: 353 TTGAHQFRHGLACQMLSHGASLSEIGELLGHHHPQTTKIYTKVDIKAL 400 >gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec] gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec] gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec] gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec] Length = 355 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 32/50 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ + NG DL SIQ +LGHS ++TT Y +V+ R+ + + Sbjct: 290 TPHILRHYCASQMYLNGIDLVSIQEMLGHSWVATTMRYVHVHRTRIEDAW 339 >gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574] gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574] Length = 448 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ +K+K Sbjct: 358 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKHQEKNK 417 Query: 66 KN 67 ++ Sbjct: 418 ED 419 >gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87] gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+NG + ++ +LGH++L+TTQIY V K++ Sbjct: 348 TFHIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKV 394 >gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] Length = 346 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H R +FAT L G D+ IQ +LGH ++TT IY NV+ + E Y Sbjct: 293 HRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKY 340 >gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198] gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198] Length = 168 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+FATH + NGG + ++Q ILGH+ L T Y Sbjct: 108 HALRHTFATHFMMNGGSIITLQRILGHTNLQQTLTY 143 >gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 407 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 26/41 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRHS AT LL G L I +L HS+ +TTQIY V+ Sbjct: 351 AHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVD 391 >gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 524 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT ++ G D+R Q +LGH+ TT+IY +V + + + Sbjct: 157 HMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQ 202 >gi|308172828|ref|YP_003919533.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307605692|emb|CBI42063.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] Length = 182 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H+LR +F H NG DL +QSI HS+ S T Y +N R+ E+Y Sbjct: 129 CHSLRKTFGYHAYKNGTDLTLLQSIFNHSKQSVTLRYIGINQDRIDEVY 177 >gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259] gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259] Length = 489 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 424 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 469 >gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226] gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226] Length = 345 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FATH + N GD+ +Q ILGH ++ T Y + + +++ Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336 >gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] Length = 322 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGHS + T Y ++ Sbjct: 267 HVLRHTFASHFMMNGGNILTLQKILGHSTIMQTMTYAHL 305 >gi|282858083|ref|ZP_06267278.1| site-specific recombinase, phage integrase family [Pyramidobacter piscolens W5455] gi|282584005|gb|EFB89378.1| site-specific recombinase, phage integrase family [Pyramidobacter piscolens W5455] Length = 338 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 HTLRH+F ++LLSNG + +Q +LGH+ +STT IY +V + Sbjct: 281 HTLRHTFTSNLLSNGAQPKDVQELLGHADVSTTMNIYAHVTKE 323 >gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 348 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H R +FAT L G D+ IQ +LGH ++TT IY NV+ + E Y Sbjct: 295 HRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKY 342 >gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] Length = 297 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ AT LS+G +LR IQ +LGH+ TT Y V K++++ Sbjct: 241 HKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLK 286 >gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa] Length = 333 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 312 >gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587] gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587] Length = 345 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FATH + N GD+ +Q ILGH ++ T Y + + +++ Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336 >gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 293 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 3/44 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNS 46 H+LRHSFATHLL +G L I+ +LGH+ + +T +Y NV S Sbjct: 229 HSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLANVTS 272 >gi|258592916|emb|CBE69225.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 124 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRH-SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH +FATH+L G D+R +Q +LGHS + TT +YT+V Sbjct: 70 HGKRHPAFATHVLEGGYDIRPVQELLGHSDVKTTMMYTHV 109 >gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 171 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 114 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKL 158 >gi|226328879|ref|ZP_03804397.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198] gi|225202065|gb|EEG84419.1| hypothetical protein PROPEN_02780 [Proteus penneri ATCC 35198] Length = 186 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+ L G D R IQ LGH +S T IYT NSKR I+D Sbjct: 135 HMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKRFFHIWD 183 >gi|148982562|ref|ZP_01816804.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] gi|145960413|gb|EDK25803.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] Length = 138 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +++ ILGH+ ++ T Y ++ +++ Sbjct: 65 VHVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLID 111 >gi|72383982|ref|YP_293336.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia eutropha JMP134] gi|72123325|gb|AAZ65479.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia eutropha JMP134] Length = 616 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + HTLRH+FATH ++N +Q +LGH+ L TT +Y R Sbjct: 558 SAPHTLRHTFATHAVANEMPTDVLQRLLGHASLQTTSLYVRAERAR 603 >gi|328554892|gb|AEB25384.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens TA208] Length = 182 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H+LR +F H NG DL +QSI HS+ S T Y +N R+ E+Y Sbjct: 129 CHSLRKTFGYHAYKNGTDLTLLQSIFNHSKQSVTLRYIGINQDRIDEVY 177 >gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 408 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT L+NG D+ ++ +LGH+ + TTQ Y V K ++ Sbjct: 354 TFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNKIK 401 >gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606] gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3] gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3] Length = 312 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 257 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 298 >gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815] gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815] Length = 331 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H +RHS A HLL +G D+ +I++ LGH L TT IY V+ Sbjct: 255 SPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEVD 296 >gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100] gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100] Length = 355 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 32/45 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +++++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKL 341 >gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 410 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|283777783|ref|YP_003368481.1| resolvase [Citrobacter rodentium ICC168] gi|282952071|emb|CBG91801.1| resolvase [Citrobacter rodentium ICC168] Length = 263 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +Q+++GH +S+T+ YT V Sbjct: 195 TPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEAYTKV 235 >gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139] gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33] gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa] gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33] gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9] gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236] gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139] gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33] gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa] gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9] gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33] gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236] gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10] Length = 345 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FATH + N GD+ +Q ILGH ++ T Y + + +++ Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336 >gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863] Length = 337 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361] gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361] Length = 293 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V +++ E D+ KDK Sbjct: 204 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKYKAKDK 263 >gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b] gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b] Length = 390 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS+A+ L++ G + +Q +LGHS ++TTQ Y ++ S+R+ E Sbjct: 333 HDLRHSYASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHE 378 >gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 431 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V +++ E D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQSAKEK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|229120912|ref|ZP_04250154.1| Site-specific recombinase, phage integrase [Bacillus cereus 95/8201] gi|228662572|gb|EEL18170.1| Site-specific recombinase, phage integrase [Bacillus cereus 95/8201] Length = 384 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H +RHS ATH LS+ GD+ S++ ILGH+ L T IY+++ Sbjct: 316 HLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354 >gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 341 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGHS + T Y++ Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSH 322 >gi|148974962|ref|ZP_01811942.1| Integrase [Vibrionales bacterium SWAT-3] gi|145965471|gb|EDK30720.1| Integrase [Vibrionales bacterium SWAT-3] Length = 125 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRHSFA+H + NGG++ ++ ILGH+ +S T Y + + E Sbjct: 68 ASHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSE 115 >gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361] gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKV 387 >gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 341 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei 6A8] gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8] Length = 306 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 4/57 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRMMEIYDQTHP 58 T H +RHS+A+ L +LR +Q LGH+ + TT++Y T+++ +R ++Y Q P Sbjct: 244 TPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERR--QVYQQFFP 298 >gi|34335022|gb|AAQ64997.1| unknown [synthetic construct] gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 341 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A] gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A] Length = 200 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 28/37 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RHSFA ++L+NG +++++ S+LGHS L T+ YT Sbjct: 145 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 181 >gi|229101972|ref|ZP_04232686.1| Site-specific recombinase, phage integrase [Bacillus cereus Rock3-28] gi|228681555|gb|EEL35718.1| Site-specific recombinase, phage integrase [Bacillus cereus Rock3-28] Length = 384 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H +RHS ATH LS+ GD+ S++ ILGH+ L T IY+++ Sbjct: 316 HLIRHSAATHYLSSSGDVESLRKILGHADLRTVLIYSHL 354 >gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6] gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6] Length = 343 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRHSFA+H + NGG++ ++ ILGH+ +S T Y + + E Sbjct: 287 SHVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSE 333 >gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1] gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1] Length = 337 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + E Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLFE 327 >gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735] gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735] Length = 410 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061] gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061] Length = 337 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA H + NGG++ ++Q I+GH+ + T Y Sbjct: 266 AVHVLRHTFAAHFMMNGGNILTLQKIMGHANIQQTMAYA 304 >gi|241764933|ref|ZP_04762933.1| tyrosine recombinase XerC subunit [Acidovorax delafieldii 2AN] gi|241365495|gb|EER60260.1| tyrosine recombinase XerC subunit [Acidovorax delafieldii 2AN] Length = 64 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 HS HLL + GD+R++Q +L HS +TTQI T ++ + ++YD +P +K Sbjct: 10 HSVVNHLLQSSGDVRAVQGLLVHSN-TTTQINTRLDCRHPAKVYDTAYPRTPKK 62 >gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565] gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565] Length = 391 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 335 HTARHTNATLLIYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1] Length = 379 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+ L+++G + + +LGHS+L TTQ Y+++++ ++ D Sbjct: 326 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 374 >gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431] Length = 343 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361] gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKV 387 >gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 253 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL +G + +Q +LGH R+ +T Y Sbjct: 211 HTLRHSYATHLLEDGVPIIMVQKLLGHERIESTMEY 246 >gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105] gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105] Length = 393 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 S +AH LRH+ +H+ ++G DLR I+ LGH+ +STT IY + + + Sbjct: 331 SASAHWLRHTAGSHMANSGVDLRVIRDNLGHASISTTSIYLHTDDDQ 377 >gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192] gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192] Length = 333 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 312 >gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM 22836] Length = 406 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T +LS G + SI ++GH+ +S+TQIY+ V ++ E D+ Sbjct: 339 HMSRHSFGTLMLSAGIPIESISKMMGHTNISSTQIYSKVTDDKISEDMDK 388 >gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 336 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYA 310 >gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 326 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483] gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483] Length = 409 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDR 397 >gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89] gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89] gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88] Length = 330 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304 >gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 325 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LR +FAT +L NG DL +++ +GH+ ++TTQ Y +R+ + D+ Sbjct: 270 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 321 >gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 351 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGHS + T Y++ Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSH 322 >gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68] Length = 330 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304 >gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606] gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606] Length = 429 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 361 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKI 406 >gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 325 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + + E Sbjct: 266 SHVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRYAHLAPEHLNE 312 >gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 296 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 238 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 276 >gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 359 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRHS+ +HL+ +G D +Q +GHS STT +YT V + Sbjct: 295 SVHCLRHSYVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGA 337 >gi|228469599|ref|ZP_04054586.1| integrase [Porphyromonas uenonis 60-3] gi|228308852|gb|EEK17539.1| integrase [Porphyromonas uenonis 60-3] Length = 261 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT L+ G L ++ S+LGHS LSTT+IY V ++ E Sbjct: 198 TYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPMKVSE 245 >gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH +RH+ A L+++G DL I+ +LGHS + TT+IY ++K Sbjct: 260 SAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAK 303 >gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 336 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYA 310 >gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] Length = 265 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH FAT G D+ ++QS+LGH++L TT IY ++ Sbjct: 207 TPHQLRHRFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALD 248 >gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA] gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA] gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 409 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 397 >gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 384 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 318 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 363 >gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] Length = 314 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH LRH+ AT + +G D+R ++ ILGH L TT+IYT++++++M + D Sbjct: 245 SAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAAD 296 >gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 329 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+FAT L +G + I +LGH+ ++++Q Y V ++ E Sbjct: 260 TLVHALRHTFATRLAEDGASVSEIMHLLGHASVASSQAYIEVTARAQRE 308 >gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi] Length = 326 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 439 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ KDK Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDSKISEDMDRLIARYKAKDK 409 >gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36] Length = 356 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L+ G D+ ++ +L HS L+TTQ+Y +V Sbjct: 291 TFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADV 331 >gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] Length = 336 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316 >gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88] gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88] Length = 339 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAH 319 >gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] Length = 336 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316 >gi|299142622|ref|ZP_07035752.1| integrase [Prevotella oris C735] gi|298575837|gb|EFI47713.1| integrase [Prevotella oris C735] Length = 349 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ ILGHS + TTQIY + ++ E Sbjct: 271 TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQE 319 >gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1] gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22] gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1] gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22] gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397 >gi|224371536|ref|YP_002605700.1| integrase family protein [Desulfobacterium autotrophicum HRM2] gi|223694253|gb|ACN17536.1| integrase family protein [Desulfobacterium autotrophicum HRM2] Length = 55 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51 L H FA+HLL D+R+IQ +LGHS + TT IYT+ V+S+ + E Sbjct: 4 LSHCFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVHSRTIKE 48 >gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195] gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195] Length = 354 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 32/45 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S+++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKL 341 >gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227] Length = 326 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|167761667|ref|ZP_02433794.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC 43183] gi|167700462|gb|EDS17041.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC 43183] Length = 123 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ Sbjct: 56 HTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNI 94 >gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 341 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHS A HLL +L I+ LGHS ++TT++Y + K E + +P I + Sbjct: 261 CHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASDKMKKEALAKLNPGIIIEG 320 Query: 65 K 65 K Sbjct: 321 K 321 >gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905] gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327] Length = 326 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 334 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT L +G D+ IQS+LGH+ STTQIY + + Y Q Sbjct: 281 HLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIYAENSLDNLKHEYKQ 330 >gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W] gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi] gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W] gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W] gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11] Length = 326 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|149918868|ref|ZP_01907354.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820242|gb|EDM79659.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 120 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQTHPSITQ 62 HTLRH+F +HL G R IQ + GH+ L TTQ Y +++ ++ + + +Q P + Sbjct: 37 HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSPGATEAAIALLEQPAPVLKP 96 Query: 63 KDKK 66 + K Sbjct: 97 AEPK 100 >gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C] gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli B185] gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C] gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli B185] Length = 326 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. doylei 269.97] gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. doylei 269.97] Length = 354 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007] Length = 331 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304 >gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter coli JV20] gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter coli JV20] Length = 368 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 311 AHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDNDKL 355 >gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] Length = 336 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 316 >gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43] gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43] Length = 326 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum WAL-14163] gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum WAL-14163] Length = 410 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H+LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 350 SVHSLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398 >gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678] Length = 318 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ + E Sbjct: 263 ASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQE 310 >gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 330 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYA 304 >gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] Length = 326 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 353 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L + DL +Q LGH+ L T++IYT+ + +++ Sbjct: 295 AHMLRHTFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFDKEKL 339 >gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4] gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 409 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397 >gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3] gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3] Length = 423 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 352 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKI 397 >gi|228471472|ref|ZP_04056256.1| integrase [Porphyromonas uenonis 60-3] gi|228306725|gb|EEK15871.1| integrase [Porphyromonas uenonis 60-3] Length = 254 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT L+ G L ++ S+LGHS LSTT+IY V ++ E Sbjct: 191 TYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPLKVSE 238 >gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 423 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + LSNG + ++ +LGHS+++TTQIY V Sbjct: 349 TFHMARHTFATTVTLSNGVPIETVSKLLGHSKIATTQIYARV 390 >gi|255690324|ref|ZP_05413999.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260624124|gb|EEX46995.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 130 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 30/43 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 +T RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ Sbjct: 75 YTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKK 117 >gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 337 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 + T HT RH AT LL+ G L + +ILGH+ T Q Y +++ E++DQ P Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDEQLQELHDQFAP 332 >gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638] gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638] Length = 327 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHL 306 >gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 423 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 352 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKI 397 >gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 423 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 352 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKI 397 >gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 407 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDK 393 >gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74] gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74] Length = 378 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L G DL +I +LGH ++TTQIY + Sbjct: 318 TFHAFRHTFATLQLMEGTDLYTISKLLGHRNITTTQIYAKI 358 >gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 353 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 28/40 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ Sbjct: 281 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSH 320 >gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 414] gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 414] Length = 354 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. jejuni 81116] gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 81116] gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni M1] Length = 354 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195] gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195] Length = 318 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ + E Sbjct: 263 ASHVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQE 310 >gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228] gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228] Length = 354 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 327 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++Q ILGHS + T Y + Sbjct: 270 HVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYAH 307 >gi|317477537|ref|ZP_07936761.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906291|gb|EFV28021.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 192 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 129 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 173 >gi|313674555|ref|YP_004052551.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312941253|gb|ADR20443.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 417 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + L+NG + ++ +LGH++LSTTQIY V Sbjct: 350 TFHIARHTFATTVTLTNGVPMETVSKMLGHTKLSTTQIYAKV 391 >gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236] gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236] Length = 345 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGHS + T Y++ Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSH 322 >gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni subsp. jejuni S3] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] Length = 342 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +++ ILGH+ ++ T Y ++ +++ Sbjct: 269 VHVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLID 315 >gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 84-25] gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 84-25] gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902] gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis MIT 98-5491] gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491] gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter canadensis MIT 98-5491] gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491] gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter canadensis MIT 98-5491] Length = 353 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 30/45 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHSFAT L DL +Q LGH+ + T++IYT+ + +++ Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQKL 346 >gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17] gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RHSFAT+LLS G +++ + +LGHS L TQ Y Sbjct: 347 TWHCGRHSFATNLLSTGANIKVVSELLGHSSLKFTQKYV 385 >gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 295 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHS+ATHLL +G + +Q +LGH R+ +T Y Sbjct: 219 HTLRHSYATHLLEDGVSIIMVQKLLGHERIESTMEY 254 >gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54] gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54] Length = 357 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ A+HLL G D+R + ILGHS L+ T YT++ R E Sbjct: 302 HDLRHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRRQE 347 >gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 341 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319 >gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 361 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+FA+HL+ G LR++Q +LGHS + T Y +++ K Sbjct: 296 HDLRHTFASHLVMRGVPLRAVQELLGHSTIEMTMRYAHLSPK 337 >gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F +HL NG L I+ I GH L++ Q Y + + KR+ +I ++ Sbjct: 255 TVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLHNDQKRLNKIVNK 306 >gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P] gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P] Length = 350 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 27/40 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH+FA+H + NGG++ +Q ILGH+ + T Y + Sbjct: 280 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAH 319 >gi|124010377|ref|ZP_01695023.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123983544|gb|EAY24009.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 295 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 28/43 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S H+LRHS ATHL + G L + LGHS L +TQ+YT++ Sbjct: 253 SVGLHSLRHSIATHLHNGGMSLSKVSLFLGHSSLDSTQLYTHL 295 >gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 326 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 306 >gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 420 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 5/68 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTHP 58 T+H RH+FAT + L+NG + ++ ++LGHS + TTQIY V ++ M+++ Sbjct: 348 TSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLKLKSILQS 407 Query: 59 SITQKDKK 66 TQK+ K Sbjct: 408 KTTQKEMK 415 >gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 334 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT L +G D+R +Q ILGH LSTT+IYT+++ +++ + Sbjct: 261 SVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQLQD 309 >gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 290 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H LRHS A HLL +G +L I+ ILGH+ + T++Y +S++ E ++ + Sbjct: 222 SCHCLRHSKAMHLLQSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275 >gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 448 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH++AT +L G D+ +++ ++GH+ ++TT+IY ++ Sbjct: 390 HTLRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHL 428 >gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter jejuni RM1221] gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter jejuni RM1221] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 260.94] gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. jejuni 81-176] gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 260.94] gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 81-176] gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLILVQEALGHASLNTSRIYTHFDNDKL 341 >gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01] gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01] Length = 340 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRH+FA++ + NGG++ ++Q ILGHS + T Y ++ + ++ Sbjct: 283 AAHVLRHTFASYYMMNGGNIIALQRILGHSDIKQTMRYAHLAPDHLEDV 331 >gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 336 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHL 316 >gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1] gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1] gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1] Length = 282 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55 T HTLRHS+AT +L G +L+ +Q LGH L T++Y T + +R +I Q Sbjct: 216 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 270 >gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528] gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528] Length = 336 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHS A HLL N +L I+ LGHS ++TT+IY N + + ++ IT+ Sbjct: 259 HILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCNPELKRKYIEEASNFITE 315 >gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 327 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ + Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRD 311 >gi|295093966|emb|CBK83057.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 432 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH++ T+LLSNG + +Q +LGHS +STT Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406 >gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 431 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V +++ E D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKQSAKEK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319] gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319] Length = 408 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYT 388 >gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 341 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319 >gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 291 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRH+FAT+ ++ DL+++ ILGH ++TT IY + N +++ Sbjct: 234 IRVTPHILRHTFATNCINKKMDLKTLSLILGHEDIATTSIYLHKNKEQI 282 >gi|299141755|ref|ZP_07034890.1| integrase [Prevotella oris C735] gi|298576606|gb|EFI48477.1| integrase [Prevotella oris C735] Length = 422 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 342 SLTFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|251777699|ref|ZP_04820619.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082014|gb|EES47904.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 313 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +T H RH+FA + NG ++ ++Q ILGHS L TQ Y NV Sbjct: 240 TTGIHRFRHTFAKKWVLNGNNIVALQKILGHSSLDMTQKYINV 282 >gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 445 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+ L++NG + +Q +LGH+++ TTQ Y ++ + +++ Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374 >gi|332826664|gb|EGJ99490.1| hypothetical protein HMPREF9455_04142 [Dysgonomonas gadei ATCC BAA-286] Length = 447 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HT RH+F TH+ LS G + ++ ++GH ++TTQIY V K++ E Sbjct: 355 HTARHNFGTHITLSQGVPIETVSRMMGHKNIATTQIYAKVTDKKVDE 401 >gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120] Length = 335 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH + T IY + Sbjct: 271 HVLRHTFASHFMMNGGNILVLRDILGHVDIKMTMIYAH 308 >gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|213052516|ref|ZP_03345394.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 94 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y Sbjct: 35 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYA 71 >gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis] gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 407 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] Length = 362 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT--HPSITQ 62 H LRH+FAT L G L ++Q +LGHS + TQ+Y ++ + Y QT P +TQ Sbjct: 240 HILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLHMTYDDVEREYYQTFASPMLTQ 298 >gi|116662238|ref|YP_829292.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613002|gb|ABK05711.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 363 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L G D++++Q +LGH LSTT Y +V S+ + + + + + + Sbjct: 296 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQAWKNANERVESR 355 >gi|229000956|ref|ZP_04160415.1| Integrase [Bacillus mycoides Rock3-17] gi|228758796|gb|EEM07881.1| Integrase [Bacillus mycoides Rock3-17] Length = 122 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ A L NGGDL S+Q ILGH+ ++ T+ Y + ++ ++ Q Sbjct: 61 VSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMTRRYVQFMYEDVVALHKQ 113 >gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] Length = 229 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L+ G D+ ++ +L HS L+TTQ+Y +V Sbjct: 164 TFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADV 204 >gi|167617449|ref|ZP_02386080.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 205 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q LGH L+ T Y +++ + + E Sbjct: 137 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 182 >gi|91206303|ref|YP_538657.1| resolvase [Escherichia coli UTI89] gi|91075754|gb|ABE10634.1| resolvase [Escherichia coli UTI89] Length = 269 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS A H+L G L+ +QS++GH +S+T++YT V Sbjct: 200 TPHTFRHSDAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2] gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2] gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2] gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 341 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 319 >gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a] gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a] Length = 335 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH+FATH + NGG++ ++Q ILGH+ + T Y Sbjct: 273 HVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYA 309 >gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574] gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574] Length = 407 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|298484293|ref|ZP_07002456.1| integrase [Bacteroides sp. D22] gi|298269540|gb|EFI11138.1| integrase [Bacteroides sp. D22] Length = 431 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 348 HLSRHTFATTIYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|260439192|ref|ZP_05793008.1| putative phage integrase [Butyrivibrio crossotus DSM 2876] gi|292808362|gb|EFF67567.1| putative phage integrase [Butyrivibrio crossotus DSM 2876] Length = 432 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH++ T+LLSNG + +Q +LGHS +STT Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406 >gi|238925711|ref|YP_002939228.1| integrase [Eubacterium rectale ATCC 33656] gi|238877387|gb|ACR77094.1| integrase [Eubacterium rectale ATCC 33656] Length = 432 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH++ T+LLSNG + +Q +LGHS +STT Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406 >gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii DSM 519] gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium sticklandii] Length = 308 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS+A+ L+ G D+ ++ ++GHS ++T+IY ++N + + D+ HP Sbjct: 251 TLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNNLRDSVDK-HP 304 >gi|218133017|ref|ZP_03461821.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC 43243] gi|217991890|gb|EEC57894.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC 43243] Length = 432 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH++ T+LLSNG + +Q +LGHS +STT Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406 >gi|146301359|ref|YP_001195950.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155777|gb|ABQ06631.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHS A HL N + I+S LGH++++TT IY N KR Sbjct: 255 TLHCLRHSIAFHLAENNAGIDFIRSFLGHTQINTTYIYAVQNKKR 299 >gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 317 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT LL G +L+ +Q +LGH+ +STT Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTT 286 >gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973] gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973] Length = 407 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|291527074|emb|CBK92660.1| Site-specific recombinase XerC [Eubacterium rectale M104/1] Length = 377 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT+ +S+G D +S+ ILGHS ++ T ++ N+ +KR Sbjct: 323 HALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLETKR 368 >gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO] gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 276 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT+LL G +L+ +Q LGHS L+TT+ Y V M E Sbjct: 222 SPHVLRHTAATNLLKKGVNLKIVQEFLGHSSLATTERYLRVTINDMKE 269 >gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 439 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K+K Sbjct: 350 HMGRHTFGTMCLSAGIPIESIAKMMGHTSIASTQIYAQVTDCKISEDMDKLIAKHQEKNK 409 Query: 66 KN 67 +N Sbjct: 410 EN 411 >gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] Length = 325 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y Sbjct: 266 STHVLRHTFASHFMMNGGNILVLQQILGHASITDTMKYA 304 >gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 407 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 30/39 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+ L++NG L +++ +LGHS L+ T+ Y ++ Sbjct: 357 HTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHL 395 >gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482] gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482] Length = 200 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 145 HLARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 186 >gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] Length = 302 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58 + HT RH FA L NG DL ++ +LGHS ++ T+IY +++ +R++++ +T P Sbjct: 243 SPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDERVLDMGVKTSP 298 >gi|257451926|ref|ZP_05617225.1| integrase/recombinase [Fusobacterium sp. 3_1_5R] gi|317058477|ref|ZP_07922962.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313684153|gb|EFS20988.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] Length = 333 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 25/43 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H +RH+ AT L NG DL I+ LGH+ T+IY N S Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEIYINAKS 310 >gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 420 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH++AT LL+ G D+ + +LGHS ++TT IY + K+ +E Sbjct: 362 TYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKVE 409 >gi|257091624|ref|YP_003165267.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048633|gb|ACV37820.1| hypothetical protein CAP2UW1_4695 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 318 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +H LRH+ A L+ NG L+ + +L H L TT+IY +++ ++ E+ Sbjct: 262 SHLLRHTLACRLVGNGSSLKEVADVLRHRSLETTRIYAKLDTPKLTEV 309 >gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160] gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160] Length = 416 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 30/47 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+ AT L++ G L++I LGH L TT+IY V+ R+ E+ Sbjct: 361 HALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKVDLPRLREV 407 >gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf] gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf] Length = 327 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT L G D+R++Q ILGH +STT IYT+V+ + Sbjct: 265 TVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVDKDEL 311 >gi|319642541|ref|ZP_07997190.1| integrase [Bacteroides sp. 3_1_40A] gi|317385832|gb|EFV66762.1| integrase [Bacteroides sp. 3_1_40A] Length = 71 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 9 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 59 >gi|301166079|emb|CBW25653.1| putative integrase/recombinase [Bacteriovorax marinus SJ] Length = 366 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+LR SF THLL G D+ S+Q ++GH L TT Y ++ Sbjct: 285 TNYHSLRASFITHLLRKGQDIISVQEMVGHKELKTTMGYIRLDG 328 >gi|255282217|ref|ZP_05346772.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255267165|gb|EET60370.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 429 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 7/62 (11%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY---TNVNSKRMMEIYDQTHPSIT 61 H+LRH+ AT L+ NG D++ +Q LGH + TT Q Y T+ S R ++I++Q +++ Sbjct: 367 HSLRHTHATTLIENGADIKDVQERLGHDNIQTTMQTYVHNTDTMSSRSVDIFEQ---AVS 423 Query: 62 QK 63 QK Sbjct: 424 QK 425 >gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42] Length = 304 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N K + + HP Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHP 290 >gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 260 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FAT LL+ DLR +Q ++ H + TT +YT V + +E Sbjct: 202 SHQLRHTFATELLAADVDLRIVQLLMRHESIQTTALYTRVARAQQLE 248 >gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563] gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563] Length = 356 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 7/60 (11%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-------NVNSKRMMEIYDQT 56 T H+LRH+ AT L NGG+LR Q +L HS + TT+IY N +S+ + ++ DQ+ Sbjct: 279 TPHSLRHTAATLSLINGGNLRETQKLLRHSSVRTTEIYAQDLNEDLNTSSQLIEDLIDQS 338 >gi|291524649|emb|CBK90236.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 432 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH++ T+LLSNG + +Q +LGHS +STT Sbjct: 374 HTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTT 406 >gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM 17241] gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM 17241] Length = 410 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 350 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398 >gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 280 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 25/33 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36 + H +RHSFATHLL +G ++ IQ +LGH+ LS Sbjct: 248 SPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280 >gi|289808612|ref|ZP_06539241.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 55 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + Sbjct: 14 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAH 51 >gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021] gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021] Length = 309 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 30/42 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 ++ +AH LRH+ AT+LL G D+ + +LGH+RL TT+ YT Sbjct: 250 LALSAHILRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYT 291 >gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5] gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + ++LRHS+ATH+L G DL +Q ILGH + TT YT++ + Sbjct: 236 SCYSLRHSYATHMLEAGVDLLELQQILGHVSILTTARYTHLTA 278 >gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] Length = 379 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH LSTTQIY V K Sbjct: 323 TFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDK 366 >gi|300854166|ref|YP_003779150.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528] gi|300434281|gb|ADK14048.1| putative phage-related integrase [Clostridium ljungdahlii DSM 13528] Length = 121 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 29/41 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H +RHS A++LL N + I+ +LGHS L+TT++Y N+N Sbjct: 65 PHAMRHSLASNLLHNNTPMHIIKEVLGHSNLNTTRMYLNIN 105 >gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 412 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 M H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 345 MDLVYHVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDK 400 >gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+ H LRHS ATHL + G L +I LGHS L +T+IYT++ Sbjct: 255 TSFHCLRHSIATHLHAAGVSLANIALFLGHSSLDSTRIYTHL 296 >gi|330997948|ref|ZP_08321782.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329569552|gb|EGG51322.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 431 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 307 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA + + +GGD+ S+Q +LGH + T Y ++ + E D+ +P Sbjct: 242 VKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSLFGSALKEQNDKYNP 299 >gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] Length = 407 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium acetobutylicum ATCC 824] gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 299 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FAT L +G DL +Q +LGH +STT+IYT+V+ +++ Sbjct: 242 HILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQL 286 >gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269] gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 407 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 200 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 28/37 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RHSFA ++L+NG ++++I S+LGHS L T+ YT Sbjct: 145 HCARHSFAVNILNNGTNIKTIASLLGHSGLKHTEKYT 181 >gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 351 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 30/44 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHSFAT L N DL +Q LGH+ ++T++IYT+ + R+ Sbjct: 301 HMLRHSFATLLYQNSHDLILVQESLGHADINTSRIYTHFDKNRL 344 >gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630] gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26] gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932] gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255] gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55] gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34] gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79] gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291] gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like [Clostridium difficile] gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291] Length = 304 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N K + + HP Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHP 290 >gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269] gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269] Length = 418 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 337 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT+RHS + HLL G +L I+ LGH+ + TT+IY N + + + P++ Sbjct: 258 VSPHTMRHSKSMHLLEGGVNLIYIRDFLGHASVVTTEIYAKSNPEIKRKAIEAVSPNVLP 317 Query: 63 KDK 65 +K Sbjct: 318 TEK 320 >gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 311 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T ++LRH FA + L N G+ ++Q I+GH L TT+IY + + E ++ P Sbjct: 241 TPYSLRHLFALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQSDLEEQHELASP 295 >gi|283795776|ref|ZP_06344929.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291076407|gb|EFE13771.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 344 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 284 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 332 >gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 418 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424] gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 273 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 ++H LRHS A+H + G +LR +Q LGHS+L TT+ Y ++N Sbjct: 220 ASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHIN 262 >gi|60681287|ref|YP_211431.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492721|emb|CAH07494.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 431 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614] gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614] Length = 375 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH A+HL G L++IQ +LGH LSTT Y +V S + Sbjct: 297 SPHVLRHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTHI 342 >gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 187 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 130 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 174 >gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230] gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230] Length = 368 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT L G ++ +Q ILGH L TT+IY ++ + + + Y ++ SI Sbjct: 247 HILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLHLLREDVKDQYLKSFRSI 301 >gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] Length = 273 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 ++H LRHS A+H + G +LR +Q LGHS+L TT+ Y ++N Sbjct: 220 ASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHIN 262 >gi|146301413|ref|YP_001196004.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155831|gb|ABQ06685.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHS A HL N + I++ LGH++++TT IY N KR Sbjct: 255 TLHCLRHSIAYHLAENNAGIDFIRTFLGHTQINTTYIYAVQNKKR 299 >gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] Length = 382 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH L+ G L S+ ++GH+ + TT+IY + ++ YD Sbjct: 330 HLLRHTFATHALNKGMPLESLSDLMGHACIETTRIYAKNHMSKIRYEYD 378 >gi|38637747|ref|NP_942721.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527085|gb|AAP85835.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 87 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 30/43 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H++RHS ATHLL +G D+ ++++ LGH + TT +Y ++ Sbjct: 9 VSPHSIRHSTATHLLRSGVDINTVRAWLGHVSIDTTNVYAEID 51 >gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36] Length = 385 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H+ RHS AT ++ G +L S+ ILGH +++TQ+Y V ++ +E + T+ Sbjct: 329 TYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQVYAKVKMEKKVEAMNLTN 382 >gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87] gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87] Length = 400 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + LS G + ++ +LGH++LSTTQIY+ V +++ Sbjct: 346 TFHVARHTFATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKL 392 >gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906] gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906] Length = 329 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 31/44 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 ++H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + + Sbjct: 269 SSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPE 312 >gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] Length = 397 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387 >gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter butzleri JV22] gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter butzleri JV22] Length = 350 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHSFAT L DL +Q LGH+ ++T++IYT+ + +R+ Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERL 343 >gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 271 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG ++++I +LGHS L T+ YT K Sbjct: 216 HCARHSFAVNILNNGANIKTIAGLLGHSGLKHTKKYTRAVDK 257 >gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018] gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018] Length = 350 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHSFAT L DL +Q LGH+ ++T++IYT+ + +R+ Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERL 343 >gi|160890707|ref|ZP_02071710.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492] gi|237708220|ref|ZP_04538701.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|156859706|gb|EDO53137.1| hypothetical protein BACUNI_03152 [Bacteroides uniformis ATCC 8492] gi|229457773|gb|EEO63494.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 431 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989] gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989] Length = 328 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH++A+H + GGD+ ++++ILGHS L T Y +++ M + Sbjct: 272 STHVLRHTYASHFVMKGGDILTLKNILGHSDLKVTMRYAHLSPDYMQQ 319 >gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 410 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS ++TTQ+Y V+ K++ E D+ Sbjct: 348 HQARHSFASLITLEAGVPIETISRMLGHSNITTTQVYARVSPKKLFEDMDR 398 >gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058] gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058] Length = 431 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ + D+ + KDK Sbjct: 350 HVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISKDMDRLIAKQSAKDK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 418 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] Length = 416 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKV 398 >gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87] gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87] Length = 392 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT + L+NG + ++ +LGH++LSTTQIY V Sbjct: 337 HAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARV 376 >gi|294778532|ref|ZP_06743955.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294447794|gb|EFG16371.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 403 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 320 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 362 >gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 324 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 32/46 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+ ++ G DL+++Q +LGH TT+IY +++ + + E Sbjct: 272 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLSPQHLHE 317 >gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 409 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+NG + S+ +LGH++LSTTQ+Y V ++ + Sbjct: 350 TFHIARHTFATTITLTNGVPIESVSKMLGHTKLSTTQVYAKVVESKLSD 398 >gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|291525337|emb|CBK90924.1| Site-specific recombinase XerC [Eubacterium rectale DSM 17629] Length = 377 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT+ +S+G D +S+ ILGHS ++ T ++ N+ +KR Sbjct: 323 HALRHTFATNCISSGADAKSVSEILGHSNVNITLNRYVHPNLETKR 368 >gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92] gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92] Length = 353 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKL 341 >gi|83719554|ref|YP_440652.1| Fels-2 prophage protein [Burkholderia thailandensis E264] gi|83653379|gb|ABC37442.1| Fels-2 prophage protein [Burkholderia thailandensis E264] Length = 191 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q LGH L+ T Y +++ + + E Sbjct: 123 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 168 >gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] Length = 328 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L NG D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLE 318 >gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63] gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07] gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07] Length = 304 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N K + + HP Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHP 290 >gi|146301452|ref|YP_001196043.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155870|gb|ABQ06724.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHS A HL N + I+ LGHS ++TT IY N KR Sbjct: 255 TLHCLRHSIANHLAENNAGIDFIRRFLGHSDINTTYIYALKNKKR 299 >gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574] gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574] Length = 318 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 254 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 306 >gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567] gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567] Length = 225 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRH FAT + + +LR++Q +LGH+ +STTQ Y V Sbjct: 167 TPHQLRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGV 207 >gi|257077129|ref|ZP_05571490.1| site-specific integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 144 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H RH++A +++ N DL S++ +LGH L+TT IY+ +N++ +E Sbjct: 56 SWHKCRHTYAHNMIKNDIDLESLRQMLGHEDLATTGIYSRMNTEEALE 103 >gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638] gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638] Length = 329 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LR +FAT +L NG DL +++ +GH+ ++TTQ Y +R+ + D+ Sbjct: 276 HDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEERLRQARDR 325 >gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 409 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATFITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397 >gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKV 387 >gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95] gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95] Length = 306 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 ++ T H LRH+ A LL++G +L ++ ILGH+ +STT IY +S Sbjct: 253 INATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDS 298 >gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] Length = 328 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L NG D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINARSVLEKKVLE 318 >gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062] gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062] Length = 365 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+ ++ G L I ++LGH +TTQ Y ++++ + I DQ + D Sbjct: 303 HDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSISDQVGAKLLGTDD 362 Query: 66 KN 67 N Sbjct: 363 GN 364 >gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 30/41 (73%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FA+ +S+G DL ++Q +LGH ++ TQ Y ++N+ Sbjct: 344 HDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNA 384 >gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKV 387 >gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 397 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387 >gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1] gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1] gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 397 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387 >gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 328 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + + Sbjct: 273 SHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFSPNHL 317 >gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1] Length = 346 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAH 322 >gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088] gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088] Length = 346 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAH 322 >gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A] gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis] gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis] gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A] Length = 377 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+FAT +L+ G DL + +LGH+ + TQ+Y + Sbjct: 320 TFHTARHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKI 360 >gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302] gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302] Length = 418 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V Sbjct: 359 HCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKV 397 >gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697] gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM 17393] gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136] gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136] gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|160893592|ref|ZP_02074376.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50] gi|156864577|gb|EDO58008.1| hypothetical protein CLOL250_01146 [Clostridium sp. L2-50] Length = 372 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ---TH 57 + T H LRH FA G L I LGH + TT Y N++ + +M++ D+ H Sbjct: 303 IKVTPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDQELMDVSDEFYRKH 362 Query: 58 PSITQKDK 65 SI + DK Sbjct: 363 QSIYEIDK 370 >gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKV 387 >gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] Length = 295 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T TLR+SFA LL +G D R IQ +LG+S L + Y + + + Y Q P I Sbjct: 237 TVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295 >gi|258516804|ref|YP_003193026.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780509|gb|ACV64403.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 348 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 4/63 (6%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV----NSKRMMEIYDQTHPSI 60 AH LRH+ ++H L +G ++ I +LGH++L TT +Y ++ +K + + D+ S+ Sbjct: 267 AHQLRHAKSSHWLEDGMNIVQISFLLGHAQLQTTMVYLDITTEQEAKALATLEDENDKSL 326 Query: 61 TQK 63 T+K Sbjct: 327 TKK 329 >gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 345 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEE 329 >gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1] Length = 329 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+ RH +AT L+ G D+R +Q ++GH+R+ TT YT++ K + E Sbjct: 224 PHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTHLTQKEVGE 270 >gi|296106652|ref|YP_003618352.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99 Alcoy] gi|295648553|gb|ADG24400.1| hypothetical protein lpa_01609 [Legionella pneumophila 2300/99 Alcoy] Length = 191 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++T H LRHS L ++G D RSIQ LGH + T YT + S + E +D Sbjct: 137 LATYPHMLRHSTGFKLANDGRDTRSIQHYLGHKNIQHTVRYTEIASVKFKEFWD 190 >gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii] Length = 317 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 + HTLRHS A HLL G +L I+ +LGHS + TT+IY +++SK+ Sbjct: 232 SPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKK 278 >gi|116669557|ref|YP_830490.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116609666|gb|ABK02390.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 400 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+FA L G L +Q +LGH L+TT +Y + ++E Y Sbjct: 318 TLHDLRHTFAIRALEGGMGLHEVQQLLGHQSLTTTTVYAVPRMEEVIEHY 367 >gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 368 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ +LGH+ + T IY + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDVLGHADIRMTMIYAH 319 >gi|255012236|ref|ZP_05284362.1| integrase [Bacteroides fragilis 3_1_12] gi|313150077|ref|ZP_07812270.1| integrase [Bacteroides fragilis 3_1_12] gi|313138845|gb|EFR56204.1| integrase [Bacteroides fragilis 3_1_12] Length = 403 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RHS+A +SNG + S+ +LGH++++TTQ Y + ++++ + + I+ K Sbjct: 340 TFHMSRHSYAVMAISNGMPIESVSKVLGHTKITTTQHYAKITTEKLDKDFSMLESKISDK 399 Query: 64 DK 65 K Sbjct: 400 MK 401 >gi|237721192|ref|ZP_04551673.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229450027|gb|EEO55818.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 419 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RH++AT + LS+G L ++ +LGHSR+ TTQ+Y V ++ Sbjct: 356 HTARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 400 >gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] Length = 297 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ AT L++G +LR IQ +LGH+ TT Y V K++++ Sbjct: 241 HKLRHTAATVALASGAELRVIQELLGHASPITTARYAKVGQKQLLK 286 >gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14] gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14] gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 397 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 342 HVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 387 >gi|288920638|ref|ZP_06414942.1| integrase family protein [Frankia sp. EUN1f] gi|288347978|gb|EFC82251.1| integrase family protein [Frankia sp. EUN1f] Length = 376 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+LR S+ THL+ +G D +Q +GH STT IYT V+S Sbjct: 310 HSLRRSYVTHLIEDGWDPLFVQQQVGHEHASTTAIYTCVSS 350 >gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 345 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEE 329 >gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 329 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA H + NGG++ ++Q I+GH+ + T Y Sbjct: 266 AVHALRHTFAAHFMMNGGNILTLQKIMGHATIQQTMTYA 304 >gi|58616553|ref|YP_195683.1| putative integrase [Azoarcus sp. EbN1] gi|56316016|emb|CAI10659.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 406 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + +AH LRH+ ATHLL +G L + L H+ + TT+IY + N + E Sbjct: 320 AASAHWLRHTAATHLLQDGASLLHTRDALRHASVQTTEIYISTNQRAFHE 369 >gi|150016222|ref|YP_001308476.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149902687|gb|ABR33520.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 325 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 28/40 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +T R++FAT + NGGD+ ++ +LGHS + TT+ Y N+ Sbjct: 253 VNTFRNTFATMFVRNGGDIYRLKLLLGHSNIKTTERYVNL 292 >gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302] gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302] Length = 407 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 418 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] Length = 291 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+FAT + G DL+++ ILGH + TT IY + N + Sbjct: 237 TPHILRHTFATRCIDMGMDLKTLSLILGHEDIKTTSIYLHKNKE 280 >gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348] gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348] Length = 286 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FAT+ + G L ++Q ++GH + TTQIYT++ ++ + Y Sbjct: 233 HVLRHTFATNAIRRGVPLPAVQRLMGHKDIKTTQIYTHLVTEDLENAY 280 >gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 409 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397 >gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] Length = 418 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 366 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ Sbjct: 291 HDLRHTFASLLVSGGASLEMIGRLLGHSQMQTTQRYAHL 329 >gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 407 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|145594516|ref|YP_001158813.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145303853|gb|ABP54435.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 132 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+LR S+ THL+ G D R +Q +GH STT IYT V+S Sbjct: 65 HSLRRSYVTHLIEAGHDARFVQEQVGHEHASTTSIYTCVSS 105 >gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB] gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB] Length = 338 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + E Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLSE 327 >gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973] gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973] Length = 429 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ Sbjct: 361 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQLYARITNKKI 406 >gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973] gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973] Length = 410 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + TAH RHSF T L G + SI ++GHS +++TQIY + +++ Sbjct: 349 IPITAHLARHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKI 397 >gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2] gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2] Length = 430 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ Sbjct: 356 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 394 >gi|197302334|ref|ZP_03167393.1| hypothetical protein RUMLAC_01063 [Ruminococcus lactaris ATCC 29176] gi|197298765|gb|EDY33306.1| hypothetical protein RUMLAC_01063 [Ruminococcus lactaris ATCC 29176] Length = 106 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FA G DL I+ LGH ++ TT Y N++R++E DQ + Sbjct: 42 HQLRHYFAEERRKEGWDLNDIRFALGHKKVETTIKYLGENNERLIEATDQYY 93 >gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804] gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii] gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii] Length = 349 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 + HTLRHS A HLL G +L I+ +LGHS + TT+IY +++SK+ Sbjct: 264 SPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKK 310 >gi|172064601|ref|YP_001812251.1| integrase family protein [Burkholderia ambifaria MC40-6] gi|171998086|gb|ACB69002.1| integrase family protein [Burkholderia ambifaria MC40-6] Length = 710 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + + H LRH+F +H L+NG L S ++ GH L TT IY R Sbjct: 650 AASPHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYATAELGR 696 >gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90] Length = 345 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG+L +Q +LGH+ + T Y + + E Sbjct: 277 HVLRHTFASHFMMNGGNLLVLQRVLGHTDIKMTMRYAHFAPDHLEE 322 >gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 418 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S H LRH+ A+ +L NG L+ I +L H ++TT IY V+ +R+ + Sbjct: 359 SMGTHLLRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVDFRRLAAV 409 >gi|304394965|ref|ZP_07376849.1| integrase family protein [Pantoea sp. aB] gi|304357218|gb|EFM21581.1| integrase family protein [Pantoea sp. aB] Length = 94 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+++Q+++ H + +T++YT V Sbjct: 26 TPHTFRHSYAMHMLFAGIPLKALQNLMVHKSMKSTEVYTKV 66 >gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026] gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026] Length = 351 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAH 322 >gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] Length = 418 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 291 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 30/41 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRH+ AT L NGGD+ S++ ILGH+ ++TT +Y ++ Sbjct: 230 TPHLLRHTAATTYLRNGGDVASLRRILGHATINTTALYLHL 270 >gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130] gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130] Length = 367 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ AT LL + G+LR Q +LGHS +STTQ Y +V Sbjct: 290 HDLRHTAATRLLRSTGNLRLAQMLLGHSDISTTQRYAHV 328 >gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 418 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|116747973|ref|YP_844660.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116697037|gb|ABK16225.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 189 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H +RHSFA++L+S+G D ++ + H + TTQ Y +++ + M +++ IT K+K Sbjct: 78 HGIRHSFASNLVSSGVDFYTVGGLRTHKQAVTTQRYAHLSDEAMRRAVEKSAEVITPKEK 137 Query: 66 KN 67 K Sbjct: 138 KE 139 >gi|325268703|ref|ZP_08135332.1| integrase [Prevotella multiformis DSM 16608] gi|324988947|gb|EGC20901.1| integrase [Prevotella multiformis DSM 16608] Length = 306 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + TAH RH+FAT + L NG + ++ +LGHS++ TT+ Y V K++ E Sbjct: 239 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAYVTPKKVFE 290 >gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 352 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMRYAHFAPDHLEE 329 >gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta proteobacterium MLMS-1] gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta proteobacterium MLMS-1] Length = 420 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH FAT +L G L+ + +LGH L+TT IY V+ + ++ Sbjct: 364 AHVFRHGFATRMLQEGHSLKKVADVLGHRHLATTFIYAKVDFNALNQV 411 >gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3] gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3] Length = 409 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +S+TQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISSTQVYARVSPKKLFEDMDK 397 >gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] Length = 345 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEE 329 >gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361] gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361] Length = 131 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 29/45 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ Sbjct: 71 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEK 115 >gi|154499800|ref|ZP_02037838.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC 29799] gi|150271398|gb|EDM98655.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC 29799] Length = 385 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 325 SVHNLRHTFCTRLCESTNDIKFIQQVMGHADFSTTMDIYTHITQESMEE 373 >gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme DSM 15981] gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme DSM 15981] Length = 409 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F T L D++ IQ ++GH+ STT IYT++ + M E Sbjct: 349 SVHNLRHTFCTRLCEKTNDIKFIQQVMGHADFSTTMDIYTHITQESMKE 397 >gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM 18228] gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM 18228] Length = 407 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH RH+F +++++G + SI ++GHS LS+TQ+Y + ++ + D+ Sbjct: 336 TAHVARHTFGVNMVTSGISMESIAKMMGHSSLSSTQVYAVITDDKISKDMDK 387 >gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 420 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 4/63 (6%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHPSIT 61 H RH+FAT + L+NG + ++ +LGH+++STTQIY V +++ M+I + + T Sbjct: 350 HLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDMKILREKLNNKT 409 Query: 62 QKD 64 Q D Sbjct: 410 QDD 412 >gi|257467272|ref|ZP_05631583.1| integrase/recombinase [Fusobacterium gonidiaformans ATCC 25563] gi|315918401|ref|ZP_07914641.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] gi|313692276|gb|EFS29111.1| DNA integration/recombination/inversion protein [Fusobacterium gonidiaformans ATCC 25563] Length = 333 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 25/43 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H +RH+ AT L NG DL I+ LGH+ T++Y N S Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKS 310 >gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 379 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+ AT LL+ G DL ++ +LGH+ + TTQIY + Sbjct: 323 TFHVARHTHATMLLTLGADLYTVSKLLGHTNIQTTQIYAKI 363 >gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 400 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 H LRH++AT L NG L+ IQ +LGHS + T IYT+V K + D Sbjct: 345 HALRHTYATRLFENGVSLKVIQVLLGHSSMDITANIYTHVLPKEKIRAVD 394 >gi|332884799|gb|EGK05055.1| hypothetical protein HMPREF9456_03208 [Dysgonomonas mossii DSM 22836] Length = 405 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT + LSNG + S+ +LGH + TTQIY + Sbjct: 343 TFHIARHSFATSIALSNGVPIESVSKMLGHKDIKTTQIYAKI 384 >gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 406 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y VNS+R+ Sbjct: 341 TFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNSERI 387 >gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 349 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA H + +GG++ +Q ILGHS + T Y + + +E Q +P T K Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHF-APEHLETAVQFNPLTTMK 337 >gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803] gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803] Length = 337 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H+ RHS A HLL G +L I+ ILGH + TT+IY +S++ Sbjct: 259 ASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQ 304 >gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] Length = 375 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T H LRH+ ATHLL++ D+ +++ +LGHS L+T Y + +E+ + HP Sbjct: 311 SVTPHGLRHTTATHLLADAVDMDAVRRVLGHSDLATLGRYRD-ELPGELEVAMRAHP 366 >gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01] gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01] Length = 411 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H RHSFAT+L+ NG D+ ++Q ++ H LS+TQ Y + ++++ Sbjct: 345 HVARHSFATNLIENGVDVLTVQRLMNHKDLSSTQKYVKHSQQKLL 389 >gi|312129988|ref|YP_003997328.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906534|gb|ADQ16975.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/36 (55%), Positives = 23/36 (63%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 TLRHSFA H L NG + +Q ILGHS + TT Y Sbjct: 222 TLRHSFAVHSLENGISINHLQKILGHSNIQTTSFYA 257 >gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] Length = 389 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHSFAT +L+ G D+ + +LGH+ ++TT IY + ++ +E Sbjct: 331 TYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKIE 378 >gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328] gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328] Length = 359 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + +G DLRS+Q ILGH+ TT+IYT+V K + Sbjct: 293 STHKLRHTSATLMYQHGNVDLRSLQQILGHASSKTTEIYTHVYDKNL 339 >gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457] gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457] Length = 343 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA+H + NGG++ ++ +LGH+ +S T Y+ Sbjct: 286 ASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYS 324 >gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395] gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27] gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395] gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395] gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27] Length = 343 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA+H + NGG++ ++ +LGH+ +S T Y+ Sbjct: 286 ASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYS 324 >gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354] gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933] gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171] gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299] gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str. EDL933] gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171] gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-] gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407] gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180] gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044] gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125] gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 419 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 29/41 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 M+ H RH+FAT+ L +G D+R++QS LGH +++T +Y Sbjct: 356 MNFFLHKFRHTFATNHLRDGVDIRTVQSWLGHRDINSTMVY 396 >gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 409 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 343 SFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397 >gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368] gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 419 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+NG + ++ S+LGH + TTQ+Y V K++ Sbjct: 350 TTHIARHTFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKV 396 >gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3] gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3] Length = 246 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR SFA L GD+ ++Q +LGH ++TTQ Y VN + + +Q Sbjct: 145 HSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQ 194 >gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2] gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2] Length = 423 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 386 >gi|160937770|ref|ZP_02085129.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC BAA-613] gi|158439209|gb|EDP16962.1| hypothetical protein CLOBOL_02662 [Clostridium bolteae ATCC BAA-613] Length = 321 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 26/37 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + + NGGD+ + ++LGH+ + TT+IY Sbjct: 267 PHSFRHRFAKNFIENGGDIAFLSNLLGHTSIETTRIY 303 >gi|325965385|ref|YP_004243290.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471472|gb|ADX75156.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 368 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340 >gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 414 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 2/48 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H+LRH+F T ++ G +L+++Q ILGHS +STT IY SK + EI Sbjct: 349 HSLRHTFTTRMVEAGTNLKAMQDILGHSDISTTMNIYAEA-SKDLKEI 395 >gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1] gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22] gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22] gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1] gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22] gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22] Length = 396 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430] gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430] Length = 355 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 29/45 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHSFAT L DL +Q LGH+ L T++IY + + +++ Sbjct: 303 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYMHFDKQKL 347 >gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] Length = 389 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH LSTTQIY V K Sbjct: 333 TFHCGRHTFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDK 376 >gi|116670747|ref|YP_831680.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116610856|gb|ABK03580.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 368 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340 >gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606] gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606] Length = 407 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGHS L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDK 393 >gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS+A+ L++ G + +Q +LGH+ ++TTQ Y ++ S+R+ E Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHE 351 >gi|58616527|ref|YP_195656.1| putative integrase [Azoarcus sp. EbN1] gi|56315989|emb|CAI10632.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 318 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +H LRH+ A L+ NG L+ + +L H L TT+IY +++ + E+ Sbjct: 262 SHLLRHTLACRLVENGSSLKEVADVLRHRSLETTRIYAKLDTPNLAEV 309 >gi|282879935|ref|ZP_06288659.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306177|gb|EFA98213.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 644 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS+A+ L++ G + +Q +LGH+ ++TTQ Y ++ S+R+ E Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHE 351 >gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM 16608] gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM 16608] Length = 334 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+ AT LLS G L IQ ILGH + TTQ+Y+ V Sbjct: 279 TFHCARHTCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAV 319 >gi|298250455|ref|ZP_06974259.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297548459|gb|EFH82326.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 350 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 1/41 (2%) Query: 3 TTAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T+AHTLRH+FA +L + GDL + S+LGH+ L TT+IY+ Sbjct: 267 TSAHTLRHTFARNYLAEHPGDLVGLASLLGHTSLDTTRIYS 307 >gi|257463481|ref|ZP_05627875.1| integrase/recombinase [Fusobacterium sp. D12] gi|317061040|ref|ZP_07925525.1| integrase/recombinase [Fusobacterium sp. D12] gi|313686716|gb|EFS23551.1| integrase/recombinase [Fusobacterium sp. D12] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 25/43 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H +RH+ AT L NG DL I+ LGH+ T++Y N S Sbjct: 268 SPHNIRHAIATELSLNGADLVEIRDFLGHADTKVTEVYINAKS 310 >gi|157370649|ref|YP_001478638.1| integrase family protein [Serratia proteamaculans 568] gi|157322413|gb|ABV41510.1| integrase family protein [Serratia proteamaculans 568] Length = 197 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R IQ LGH + T +YT N+ R +++++ Sbjct: 140 HMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFRDLWEE 189 >gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606] gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606] Length = 431 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ + D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAKEK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 409 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFD 396 >gi|157369299|ref|YP_001477288.1| integrase family protein [Serratia proteamaculans 568] gi|157321063|gb|ABV40160.1| integrase family protein [Serratia proteamaculans 568] Length = 197 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R IQ LGH + T +YT N+ R +++++ Sbjct: 140 HMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFRDLWEE 189 >gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] Length = 419 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRM 49 H RH+FAT L+ G DL ++ +LGH + TTQIY V+SK++ Sbjct: 294 HVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKL 338 >gi|332827396|gb|EGK00148.1| hypothetical protein HMPREF9455_03480 [Dysgonomonas gadei ATCC BAA-286] Length = 402 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T RHSFAT +SNG + ++ +LGH+ + TTQIY + S ++ Sbjct: 342 NVTFRVSRHSFATLAISNGVSIEAVSKMLGHTNVKTTQIYAQITSTKI 389 >gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319] gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319] Length = 431 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ + D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAKEK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 M + H LRH+ AT L G DL ++ +LGH+ + TT+IYT+V++K++ E Sbjct: 265 MGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVGTTEIYTHVSNKKVQE 316 >gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031] gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031] Length = 337 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T Y + Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317 >gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74] Length = 372 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 T H+ RH++AT LS G D+ ++ +LGH L TTQIY + SKR Sbjct: 316 TFHSFRHTYATLQLSLGTDIYTVSKMLGHRELKTTQIYAKIVDQSKR 362 >gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989] gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|146300425|ref|YP_001195016.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154843|gb|ABQ05697.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHS A HL+ + I+ LGHS ++TT IY N KR Sbjct: 255 TLHCLRHSIANHLMEKNAGIDFIRGFLGHSGINTTYIYAVRNKKR 299 >gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii] gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii] Length = 333 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 27/38 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TAH+ RH+ AT L+NG DLR Q +L HS +TT+IY Sbjct: 275 TAHSTRHTAATLALTNGADLRETQMLLRHSSPTTTEIY 312 >gi|209694569|ref|YP_002262497.1| phage integrase [Aliivibrio salmonicida LFI1238] gi|208008520|emb|CAQ78693.1| phage integrase [Aliivibrio salmonicida LFI1238] Length = 347 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 AH +RH+FA++ + NGG++ ++Q ILGH+ + T Y ++ + ++ + I + Sbjct: 283 AAHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRYAHLAPDHLEDVVTKNPLYIIKN 342 Query: 64 DKK 66 D K Sbjct: 343 DYK 345 >gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131] gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131] Length = 434 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGH+++ TTQ Y ++ Sbjct: 357 HDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAHL 395 >gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024] Length = 291 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 235 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 272 >gi|134287548|ref|YP_001109714.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132198|gb|ABO59933.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 701 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + + H LRH+F +H L+NG L S ++ GH L TT IY R Sbjct: 641 AASTHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYATAELGR 687 >gi|332829727|gb|EGK02373.1| hypothetical protein HMPREF9455_01643 [Dysgonomonas gadei ATCC BAA-286] Length = 409 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HSGRHSFASLITLEEGVPIETISRMLGHSNIKTTQVYARVTPKKLFEDMDK 397 >gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM 30120] gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM 30120] Length = 343 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH+F TH + GG++ ++Q ILGHS++ T Y Sbjct: 285 HIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQTMTYA 321 >gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. FRIK966] gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] Length = 333 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAH 314 >gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 377 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ R S+ATHLL +G D R +Q +GH STT IY Sbjct: 309 HSFRRSYATHLLEDGWDPRFVQDQMGHEHASTTGIY 344 >gi|295115591|emb|CBL36438.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 219 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H LRH+F T L N +L+ IQSI+GH + TT IY K+ E ++ Sbjct: 159 SCHHLRHTFCTRLCENETNLKVIQSIMGHKNIETTLDIYAEATEKKKQESFE 210 >gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 384 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HTLRHSFA+ L++ G +L + +LGH+++ TT Y++++ + + E Sbjct: 328 HTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDETLAE 373 >gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 409 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHPSI 60 T HTLRHS+ATHL + DL Q LGH+ + TQ Y + R+ E + + Sbjct: 338 TFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYAKMTENRLREGSAALEAAFKTN 397 Query: 61 TQKDKKN 67 QK KKN Sbjct: 398 GQKKKKN 404 >gi|315180749|gb|ADT87663.1| Integrase [Vibrio furnissii NCTC 11218] Length = 352 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 32/49 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRH+FA++ + NGG++ ++Q ILGH+ + T Y ++ + ++ Sbjct: 283 AAHVLRHTFASYYMMNGGNIIALQRILGHADIKQTMRYAHLAPDHLEDV 331 >gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 407 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSFA L+ G + S+ ILGH+ ++TTQIY V S ++ Sbjct: 342 HVSRHSFAVLALNYGMPIESVSKILGHTDIATTQIYAKVTSTKL 385 >gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus] gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus H3081.97] gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187] gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26] gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus] gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus H3081.97] gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus AH187] gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26] Length = 361 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+K+ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDK 354 >gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 352 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH A+ L G D++++Q +LGH LSTT Y +V S+ + Sbjct: 285 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHV 330 >gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] Length = 362 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 28/43 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RH+FAT LL+ DL ++ +LGH + TTQIY + K+ Sbjct: 308 HTARHTFATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKK 350 >gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9] gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9] Length = 326 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 30/49 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++Q LGH+ + T Y + + + ++ Sbjct: 268 AVHVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHFSPDYLQDV 316 >gi|37528603|ref|NP_931948.1| hypothetical protein plu4790 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788041|emb|CAE17162.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 140 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + GG++ ++Q ILGH+ + T Y ++ Sbjct: 82 HVLRHTFASHFVMKGGNIVALQQILGHANIQQTMAYAHL 120 >gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 404 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTECYAKVTPQKLFEEFDR 392 >gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 322 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRH+ AT + G D+R++Q +LGH +STTQIYT+V++ Sbjct: 259 STHKLRHTAATLMYKYGDIDIRTLQQLLGHENISTTQIYTHVDN 302 >gi|317124018|ref|YP_004098130.1| integrase [Intrasporangium calvum DSM 43043] gi|315588106|gb|ADU47403.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 511 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRH+ AT +L+ GG L +++LGH+R TT +Y + Sbjct: 454 AHALRHTAATAVLAAGGSLIEARALLGHARTDTTMVYARTD 494 >gi|307947331|ref|ZP_07662665.1| integrase family protein [Roseibium sp. TrichSKD4] gi|307769473|gb|EFO28700.1| integrase family protein [Roseibium sp. TrichSKD4] Length = 181 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 24/37 (64%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 LRHSFA H +S+G L +Q LGH RL TT IY+ Sbjct: 131 LRHSFAVHAISSGVPLHLVQRWLGHQRLETTAIYSQA 167 >gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 343 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMKYAHFAPDHLEE 329 >gi|226325882|ref|ZP_03801400.1| hypothetical protein COPCOM_03695 [Coprococcus comes ATCC 27758] gi|225206006|gb|EEG88360.1| hypothetical protein COPCOM_03695 [Coprococcus comes ATCC 27758] Length = 390 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FA G DL I+ LGH ++ TT Y N++R++E DQ + Sbjct: 326 HQLRHYFAEERRKEGWDLNDIRFALGHKKVETTIKYLGENNERLVEATDQYY 377 >gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269] gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269] Length = 416 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 352 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 404 >gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 332 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H +RHS ATHLL G D+ ++++ LGH L+TT IY + Sbjct: 253 VSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETD 295 >gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 390 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+ RH+F T +L+ G DL + ++GHS + TT+IY + K+ E Sbjct: 335 HSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEE 380 >gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136] gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136] Length = 406 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T +LS+G + SI ++GH+ +++TQ+Y V +++ DQ Sbjct: 339 HMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388 >gi|158340931|ref|YP_001522098.1| phage integrase family protein [Acaryochloris marina MBIC11017] gi|158311172|gb|ABW32784.1| phage integrase family protein [Acaryochloris marina MBIC11017] Length = 205 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 26/47 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS HL + G D R IQ LGH + T YT +N KR EI Sbjct: 156 HMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGEI 202 >gi|330814772|ref|YP_004362947.1| integrase family protein [Burkholderia gladioli BSR3] gi|327374764|gb|AEA66115.1| integrase family protein [Burkholderia gladioli BSR3] Length = 711 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + + H LRH+F +H L+NG L S ++ GH L TT IY R Sbjct: 651 AASPHWLRHTFVSHALANGMSLESARNFAGHDSLDTTSIYATAELGR 697 >gi|296161245|ref|ZP_06844054.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295888586|gb|EFG68395.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 620 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H LRH+F T ++ L +Q I+GH+ L TT Y +RM + H + Sbjct: 557 TSPHALRHTFGTQSVAADVPLDVVQRIMGHASLQTTTTYVTAERRRMRAEASKYHARLAG 616 Query: 63 KDKK 66 +K Sbjct: 617 SGQK 620 >gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565] gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T +LS+G + SI ++GH+ +++TQ+Y V +++ DQ Sbjct: 339 HMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388 >gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 313 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSFA H + NGG++ +Q ILGH ++ T Y Sbjct: 245 HVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYA 281 >gi|296185025|ref|ZP_06853435.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] gi|296049859|gb|EFG89283.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] Length = 199 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H+L+H+ A HL +G D++ +Q LGH +S T+IY +K+ ++Y + S Sbjct: 142 HSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYAKLEIS 195 >gi|258592036|emb|CBE68341.1| Integrase/recombinase (E2 protein) (fragment) [NC10 bacterium 'Dutch sediment'] Length = 50 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 25/31 (80%) Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 HSFATH L +G D+R++Q +LGH+ +STT I Sbjct: 16 HSFATHPLEDGYDIRTVQELLGHTDVSTTMI 46 >gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259] gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259] Length = 409 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397 >gi|149916283|ref|ZP_01904803.1| phage integrase [Roseobacter sp. AzwK-3b] gi|149809737|gb|EDM69589.1| phage integrase [Roseobacter sp. AzwK-3b] Length = 59 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS+A+ L++ G + +Q +LGH+ ++TTQ Y ++ S+R+ E Sbjct: 2 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHE 47 >gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01] gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01] Length = 330 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 28/40 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+H + GGD+ +Q ILGHS ++ T Y +++ Sbjct: 269 HILRHTFASHYMMGGGDILGLQRILGHSTITMTMRYAHLS 308 >gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 406 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 336 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S T H LR S+A+ LL NG D+ +++ LGH+ + TTQ Y + KR+ Sbjct: 261 SFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 308 >gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 386 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L G R+IQ+ILGH+ ++TT IYT+V Sbjct: 323 HDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTHV 362 >gi|261879700|ref|ZP_06006127.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333721|gb|EFA44507.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 422 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12] gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12] gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12] Length = 409 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 397 >gi|186473706|ref|YP_001861048.1| integrase family protein [Burkholderia phymatum STM815] gi|184196038|gb|ACC74002.1| integrase family protein [Burkholderia phymatum STM815] Length = 419 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LR + AT L+ G L+ + +LGH L+TT IYT V+ R+ ++ Sbjct: 364 HVLRRTAATRLIRGGASLKEVADVLGHRHLNTTTIYTGVDLDRLRKV 410 >gi|315608519|ref|ZP_07883505.1| possible tyrosine type site-specific recombinase [Prevotella buccae ATCC 33574] gi|315249791|gb|EFU29794.1| possible tyrosine type site-specific recombinase [Prevotella buccae ATCC 33574] Length = 423 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 328 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRHS A H+L D+R + LGH+ L + +IY + +E+ D P Sbjct: 251 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLRADPTEKLEMLDALAP 307 >gi|304382758|ref|ZP_07365242.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325856130|ref|ZP_08171982.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|327313879|ref|YP_004329316.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|304336077|gb|EFM02323.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325483687|gb|EGC86653.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|326945764|gb|AEA21649.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 422 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 298 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S H RH+FAT++L+ G +L I +GH+ L+TT++Y + ++ +M Y Sbjct: 242 SLHPHCCRHTFATNMLAKGAELEFIADEMGHTNLNTTRVYARILTEDIMLAY 293 >gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697] gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697] Length = 409 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF+T + L NG + ++ +LGH+ + TTQ+Y V K++ E D+ Sbjct: 347 HMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDK 397 >gi|167753782|ref|ZP_02425909.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216] gi|167658407|gb|EDS02537.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216] Length = 407 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386 >gi|57235096|ref|YP_180835.1| hypothetical protein DET0084 [Dehalococcoides ethenogenes 195] gi|57225544|gb|AAW40601.1| conserved domain protein [Dehalococcoides ethenogenes 195] Length = 96 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 HT RH+ A + L NGGD ++Q +LGH+ L+ T+ YT+ + ++ MM ++ + P Sbjct: 36 PHTFRHTAAINYLRNGGDEFTLQIMLGHTTLAMTRRYTSTLGTEDMMRVHKKVSP 90 >gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193] gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193] Length = 419 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+ L+S G L + +LGHS++STTQ Y + Sbjct: 348 HDLRHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAH 385 >gi|256838368|ref|ZP_05543878.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739287|gb|EEU52611.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 407 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386 >gi|225020746|ref|ZP_03709938.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii ATCC 33806] gi|224946519|gb|EEG27728.1| hypothetical protein CORMATOL_00753 [Corynebacterium matruchotii ATCC 33806] Length = 294 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 2 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYT 42 S T HTLRH FAT + GG DL +IQ +GH ++TTQ YT Sbjct: 230 SWTLHTLRHRFATVAYNEGGHDLLTIQQAMGHENIATTQRYT 271 >gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 406 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2] gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII] gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2] gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII] gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866] Length = 337 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T Y + Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317 >gi|238025620|ref|YP_002909852.1| Putative site-specific recombinase [Burkholderia glumae BGR1] gi|237880285|gb|ACR32616.1| Putative site-specific recombinase [Burkholderia glumae BGR1] Length = 223 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 36/56 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + ++H+ R SFA++L+ G D+ ++Q +LGH+ L Y +V+ KR+ +++ + Sbjct: 167 LGGSSHSGRRSFASNLIEQGHDIETVQQLLGHAELDHVLPYLDVSDKRLRQMFCEV 222 >gi|198275333|ref|ZP_03207864.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135] gi|212691216|ref|ZP_03299344.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855] gi|224026864|ref|ZP_03645230.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM 18228] gi|255007927|ref|ZP_05280053.1| integrase [Bacteroides fragilis 3_1_12] gi|298383989|ref|ZP_06993550.1| integrase [Bacteroides sp. 1_1_14] gi|301311550|ref|ZP_07217477.1| integrase [Bacteroides sp. 20_3] gi|313145638|ref|ZP_07807831.1| integrase [Bacteroides fragilis 3_1_12] gi|198271916|gb|EDY96186.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135] gi|212666448|gb|EEB27020.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855] gi|224020100|gb|EEF78098.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM 18228] gi|298263593|gb|EFI06456.1| integrase [Bacteroides sp. 1_1_14] gi|300830636|gb|EFK61279.1| integrase [Bacteroides sp. 20_3] gi|313134405|gb|EFR51765.1| integrase [Bacteroides fragilis 3_1_12] gi|313158703|gb|EFR58091.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 407 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386 >gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238] gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238] Length = 422 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ Sbjct: 337 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 375 >gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 412 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF+T + L NG + ++ +LGH+ + TTQ+Y V K++ E D+ Sbjct: 350 HMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDK 400 >gi|319900072|ref|YP_004159800.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415103|gb|ADV42214.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 431 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606] gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606] Length = 362 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +++TQIY V +M E D+ Sbjct: 292 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKMSEDMDR 341 >gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 406 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae] Length = 300 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA+H + NGG++ +Q ILGH+ + T Y Sbjct: 239 SHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYA 276 >gi|255527691|ref|ZP_05394548.1| integrase family protein [Clostridium carboxidivorans P7] gi|255508604|gb|EET84987.1| integrase family protein [Clostridium carboxidivorans P7] Length = 215 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H+L+H+ A HL +G D++ +Q LGH +S T+IY +K+ ++Y + S Sbjct: 158 HSLKHTTAVHLAESGMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMYAKLEIS 211 >gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185] gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185] Length = 361 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+K+ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354 >gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT LL+ G DL ++ +LGH+ + TTQIY + Sbjct: 337 TFHTARHTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKL 377 >gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] Length = 353 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT L NGGD+R +Q++LGH + + YT+++ + E + + P + + Sbjct: 282 PHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLSKSSLKEQHSKHSPLVQITE 341 Query: 65 KKN 67 K N Sbjct: 342 KLN 344 >gi|84386542|ref|ZP_00989569.1| site-specific recombinase, phage integrase family [Vibrio splendidus 12B01] gi|84378647|gb|EAP95503.1| site-specific recombinase, phage integrase family [Vibrio splendidus 12B01] Length = 129 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 27/37 (72%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 L + F LL +G D+R++Q +LGHS + TTQIYT+V Sbjct: 78 LYNQFIKQLLKSGSDIRTVQELLGHSDVKTTQIYTHV 114 >gi|304382548|ref|ZP_07365043.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|304336379|gb|EFM02620.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] Length = 422 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|299142946|ref|ZP_07036072.1| integrase [Prevotella oris C735] gi|298575562|gb|EFI47442.1| integrase [Prevotella oris C735] Length = 422 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 407 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA ++L+NG +++++ S+LGH+ L T+ YT K Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTRAVDK 393 >gi|119952366|ref|YP_949908.1| phage integrase family protein [Arthrobacter aurescens TC1] gi|119951496|gb|ABM10406.1| phage integrase family domain protein [Arthrobacter aurescens TC1] Length = 333 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH A+ L + G D+++IQ +LGH L+TT Y +V S + Sbjct: 268 TPHVLRHYCASSLYAAGMDIKAIQELLGHQWLATTSGYLHVRSDHI 313 >gi|116662305|ref|YP_829359.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613069|gb|ABK05778.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 368 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVS 340 >gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 409 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397 >gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319] gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDR 397 >gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16] Length = 310 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA + NG + +Q+ILGH+ L T++Y N+ S + + + + P Sbjct: 250 SPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 304 >gi|190015178|ref|YP_001966799.1| integrase/recombinase [Bacillus cereus] gi|190015443|ref|YP_001967123.1| site-specific tyrosine recombinase XerS [Bacillus cereus] gi|218848308|ref|YP_002455193.1| integrase/recombinase, phage integrase family [Bacillus cereus AH820] gi|116584854|gb|ABK00969.1| integrase/recombinase [Bacillus cereus] gi|116585124|gb|ABK01233.1| integrase/recombinase [Bacillus cereus] gi|218540359|gb|ACK92755.1| integrase/recombinase, phage integrase family [Bacillus cereus AH820] Length = 361 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+K+ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354 >gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 337 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA + NG + +Q+ILGH+ L T++Y N+ S + + + + P Sbjct: 277 SPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 331 >gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 330 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R++Q +LGH ++TT+IYT+++ +++ + D+ Sbjct: 263 STHKLRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTHLDKEQLKDAVDK 315 >gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 380 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H+LRH+ AT LL G +++ IQ LGHS LSTT IY++V +K Sbjct: 318 HSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTNK 360 >gi|2392139|pdb|1AIH|A Chain A, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392140|pdb|1AIH|B Chain B, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392141|pdb|1AIH|C Chain C, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392142|pdb|1AIH|D Chain D, Catalytic Domain Of Bacteriophage Hp1 Integrase Length = 170 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGHS + T Y Sbjct: 113 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYA 149 >gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 573 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+ AT ++ G L +I ++LGH LS T++Y + ++ + + Y Sbjct: 420 TPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYARIANRTVADEY 469 >gi|312887800|ref|ZP_07747387.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299619|gb|EFQ76701.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 409 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T H RH+FAT + LSNG + S+ +LGH+ + +TQ+Y V +++ E Sbjct: 347 AITFHIARHTFATTITLSNGVPIESVSKMLGHTTIRSTQVYAKVVEQKLSE 397 >gi|295087379|emb|CBK68902.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 351 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 M AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +K+ Sbjct: 265 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 312 >gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 371 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H++RHS+AT L ++++Q +LGH ++TT IYT+V ++ +E+ D+ Sbjct: 317 HSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKLEVLDK 367 >gi|282858447|ref|ZP_06267626.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588763|gb|EFB93889.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 422 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|256840313|ref|ZP_05545821.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737585|gb|EEU50911.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 350 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 M AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +K+ Sbjct: 264 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 311 >gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146] gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146] Length = 295 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS ++ T Y + Sbjct: 226 HVLRHTFASHFMMQGGNILVLQQILGHSTITMTMRYAH 263 >gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] Length = 329 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 35/47 (74%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + G D+R+++ ILGH+ +STTQIYT+++++ + Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQIYTHLDNEDL 315 >gi|291326772|ref|ZP_06125804.2| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131] gi|291312880|gb|EFE53333.1| putative integrase/recombinase y4rA [Providencia rettgeri DSM 1131] Length = 322 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T+AH LRH+ A LL+ G ++ I IL H L+ T+IY ++S+ + + Sbjct: 256 TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLAHV 305 >gi|281413586|ref|ZP_06245328.1| hypothetical protein MlutN2_00020 [Micrococcus luteus NCTC 2665] Length = 39 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 26/36 (72%) Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +R +Q +LGH+ ++TTQ+YT V + + E+Y Q HP Sbjct: 1 MRVVQELLGHATVTTTQVYTLVTVESLREVYAQAHP 36 >gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ T LL+ G DL +I+ I GH +S+T+IY +V + + Sbjct: 245 TVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQREI 290 >gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886] gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886] Length = 346 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH+FA+H + +GGD+ ++Q ILGH+ + T Y Sbjct: 287 HVFRHTFASHFMQHGGDILTLQRILGHANIQMTMKYA 323 >gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 379 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T H RH+ AT +L+ G DL +I +LGH+ + TTQIY V+ +M I Sbjct: 322 VTFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAI 372 >gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b] gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b] Length = 343 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAH 319 >gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2] Length = 337 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T Y + Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317 >gi|29349952|ref|NP_813455.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29341863|gb|AAO79649.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 308 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT +++Y HP++ QK + Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297 >gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 342 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T HT+RH+ ATH+L G + +I++ LGHS +STT+ Y ++ Sbjct: 264 TPHTMRHTTATHMLEAGVPIVAIKNFLGHSSISTTERYAELS 305 >gi|281425380|ref|ZP_06256293.1| integrase [Prevotella oris F0302] gi|281400373|gb|EFB31204.1| integrase [Prevotella oris F0302] Length = 186 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + S+ S+LGH +S+TQIY + ++++ Sbjct: 116 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 162 >gi|265753910|ref|ZP_06089265.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235624|gb|EEZ21148.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 342 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 M AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +K+ Sbjct: 256 MDLHAHQFRHAKASHWLENGMNIAQISYLLGHESIQTTMVYLDITTKQ 303 >gi|256840487|ref|ZP_05545995.1| integrase [Parabacteroides sp. D13] gi|256737759|gb|EEU51085.1| integrase [Parabacteroides sp. D13] Length = 431 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NGG + ++ ILGH +STTQIY V ++ Sbjct: 348 HLSRHTFATTVYLCNGGTIEALSKILGHKHISTTQIYAEVTNR 390 >gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565] gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565] Length = 409 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V+ KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPKRLFEDMDR 397 >gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17] Length = 331 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H +RHS A HLL G D+ +I++ LGH L+TT IY ++ Sbjct: 254 SPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEID 295 >gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+ L++NG + +Q +LGH+++ TTQ Y ++ + +++ Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374 >gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ + NGG++ ++Q ILGH+ + T +Y ++ Sbjct: 268 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHL 306 >gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16] Length = 540 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH+FAT L NG D++++ ++LGH +TT IYT++ S + E Sbjct: 323 HDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTHITSDMLSE 369 >gi|188026429|ref|ZP_02997898.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827] gi|188019828|gb|EDU57868.1| hypothetical protein PROSTU_04137 [Providencia stuartii ATCC 25827] Length = 643 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T+AH LRH+ A LL+ G ++ I IL H L+ T+IY ++S+ + + Sbjct: 256 TSAHLLRHTMANRLLATGASIKDIADILRHRSLNATRIYAKLDSRNLAHV 305 >gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 397 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IYT++N Sbjct: 339 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLN 379 >gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 305 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH++ATHL+ G +L +Q ILGH + TT YT++ + D+ Sbjct: 238 SPHSLRHAYATHLVEAGVELTEVQDILGHHSILTTVRYTHLTDRSRHHAIDR 289 >gi|229014934|ref|ZP_04172022.1| Phage integrase [Bacillus mycoides DSM 2048] gi|228746346|gb|EEL96261.1| Phage integrase [Bacillus mycoides DSM 2048] Length = 351 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 294 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 338 >gi|229065704|ref|ZP_04200929.1| Phage integrase [Bacillus cereus AH603] gi|228715567|gb|EEL67367.1| Phage integrase [Bacillus cereus AH603] Length = 351 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 294 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 338 >gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492] gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492] Length = 421 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RHSFAT + LSNG + ++ S+LGH + TTQ+Y + +++ Sbjct: 343 SWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKL 389 >gi|124262620|ref|YP_001023090.1| hypothetical protein Mpe_B0076 [Methylibium petroleiphilum PM1] gi|124261866|gb|ABM96855.1| hypothetical protein Mpe_B0076 [Methylibium petroleiphilum PM1] Length = 797 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S + H +RH FA L++G +++ +GH L+TT IY +RM+E Sbjct: 733 SASTHWMRHFFANTALADGVAAEAVKDAMGHKSLNTTSIYLRTERRRMVE 782 >gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM 18228] gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13] gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM 18228] gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13] Length = 406 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 343 HCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1] gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1] gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509] Length = 329 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + NGG++ ++Q I+GH+ + T Y ++ Sbjct: 266 AVHVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHL 306 >gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R] Length = 393 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 387 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRHSFA+ L+ +G L S+Q+ILGH+ + T Y+++++ +++ Sbjct: 326 TRPHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLSNTSLVD 374 >gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] Length = 393 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|303235824|ref|ZP_07322428.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483966|gb|EFL46957.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 422 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1] gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1] Length = 414 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 + H LRH+ AT + S G DL+ IQ LGHS +STT IY + ++ + E+ Sbjct: 352 SVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEV 401 >gi|229142394|ref|ZP_04270908.1| Phage integrase [Bacillus cereus BDRD-ST26] gi|228641059|gb|EEK97376.1| Phage integrase [Bacillus cereus BDRD-ST26] Length = 253 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 196 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 240 >gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 327 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H+LRH+FA + L +GG + ++ ILGH +++T Y + S+ + E Y+ Sbjct: 266 VSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRMTSEEVKEQYE 317 >gi|150006166|ref|YP_001300910.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149934590|gb|ABR41288.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 308 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT +++Y HP++ QK + Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297 >gi|34540845|ref|NP_905324.1| integrase [Porphyromonas gingivalis W83] gi|34397159|gb|AAQ66223.1| integrase [Porphyromonas gingivalis W83] Length = 407 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 343 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386 >gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 397 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IYT++N Sbjct: 339 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLN 379 >gi|288925201|ref|ZP_06419136.1| integrase [Prevotella buccae D17] gi|288337966|gb|EFC76317.1| integrase [Prevotella buccae D17] Length = 407 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 343 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386 >gi|149923432|ref|ZP_01911836.1| putative integrase [Plesiocystis pacifica SIR-1] gi|149815684|gb|EDM75211.1| putative integrase [Plesiocystis pacifica SIR-1] Length = 81 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRHSFA+HL G ++ IQ +LGHS + T Y +++ Sbjct: 16 PVSVHVLRHSFASHLAMRGASIKVIQELLGHSDIKVTMRYAHLSP 60 >gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 33/46 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+ L++NG + +Q +LGH+++ TTQ Y ++ + +++ Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLD 374 >gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001] gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006] gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007] gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008] gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009] gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010] gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011] gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011] Length = 295 Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRH +AT +LR++Q +LGH+ + TT+ YT Sbjct: 242 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 280 >gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 276 Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + GG++ +Q ILGH+ + T Y + + E Sbjct: 196 SHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTE 242 >gi|190015705|ref|YP_001967309.1| phage integrase family protein [Bacillus cereus] gi|116584612|gb|ABK00729.1| phage integrase family protein [Bacillus cereus] Length = 319 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 262 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 306 >gi|37524769|ref|NP_928113.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784194|emb|CAE13063.1| MrfI protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 190 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 29/54 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR +I++ Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFFKIWE 183 >gi|325297480|ref|YP_004257397.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317033|gb|ADY34924.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 416 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+S G + SI ++GHS + TTQ Y V K++ Sbjct: 339 HQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKI 382 >gi|299141452|ref|ZP_07034589.1| integrase [Prevotella oris C735] gi|304382985|ref|ZP_07365466.1| integrase [Prevotella marshii DSM 16973] gi|298577412|gb|EFI49281.1| integrase [Prevotella oris C735] gi|304335904|gb|EFM02153.1| integrase [Prevotella marshii DSM 16973] Length = 407 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 343 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 386 >gi|281425545|ref|ZP_06256458.1| putative integrase [Prevotella oris F0302] gi|281400351|gb|EFB31182.1| putative integrase [Prevotella oris F0302] Length = 422 Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 329 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 32/43 (74%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH+ AT + G D+R+++ ILGHS +STTQIYT+++ Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIYTHLD 311 >gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103] gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103] Length = 348 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRHSF+ H + NGG++ +Q ILGH +S T Y Sbjct: 280 HVLRHSFSAHFMMNGGNILVLQKILGHHDISMTMRYA 316 >gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 393 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|258624874|ref|ZP_05719802.1| Integrase [Vibrio mimicus VM603] gi|258582872|gb|EEW07693.1| Integrase [Vibrio mimicus VM603] Length = 133 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 28/39 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA+H + NGG++ ++ +LGH+ +S T Y+ Sbjct: 76 ASHVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYS 114 >gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+++G L +Q +LGHS +STTQ Y ++ Sbjct: 327 HDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHL 365 >gi|165873378|ref|ZP_02217977.1| integrase/recombinase, putative [Bacillus anthracis str. A0488] gi|167636799|ref|ZP_02395082.1| integrase/recombinase, putative [Bacillus anthracis str. A0442] gi|167642097|ref|ZP_02400319.1| integrase/recombinase, putative [Bacillus anthracis str. A0193] gi|170689746|ref|ZP_02880916.1| integrase/recombinase, putative [Bacillus anthracis str. A0465] gi|170709562|ref|ZP_02899962.1| integrase/recombinase, putative [Bacillus anthracis str. A0389] gi|177656393|ref|ZP_02937286.1| integrase/recombinase, putative [Bacillus anthracis str. A0174] gi|190569558|ref|ZP_03022419.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I] gi|225871653|ref|YP_002753011.1| integrase/recombinase, putative [Bacillus cereus 03BB102] gi|227811599|ref|YP_002811610.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684] gi|229599814|ref|YP_002860839.1| integrase/recombinase, putative [Bacillus anthracis str. A0248] gi|254687863|ref|ZP_05151719.1| integrase/recombinase, putative [Bacillus anthracis str. CNEVA-9066] gi|254739157|ref|ZP_05196859.1| integrase/recombinase, putative [Bacillus anthracis str. Western North America USA6153] gi|254744957|ref|ZP_05202634.1| integrase/recombinase, putative [Bacillus anthracis str. Kruger B] gi|254756553|ref|ZP_05208582.1| integrase/recombinase, putative [Bacillus anthracis str. Vollum] gi|254762487|ref|ZP_05214327.1| integrase/recombinase, putative [Bacillus anthracis str. Australia 94] gi|301068214|ref|YP_003786985.1| integrase/recombinase [Bacillus anthracis CI] gi|164710753|gb|EDR16331.1| integrase/recombinase, putative [Bacillus anthracis str. A0488] gi|167509780|gb|EDR85204.1| integrase/recombinase, putative [Bacillus anthracis str. A0193] gi|167527725|gb|EDR90564.1| integrase/recombinase, putative [Bacillus anthracis str. A0442] gi|170125523|gb|EDS94450.1| integrase/recombinase, putative [Bacillus anthracis str. A0389] gi|170666121|gb|EDT16914.1| integrase/recombinase, putative [Bacillus anthracis str. A0465] gi|172079753|gb|EDT64870.1| integrase/recombinase, putative [Bacillus anthracis str. A0174] gi|190559337|gb|EDV13361.1| integrase/recombinase, putative [Bacillus anthracis Tsiankovskii-I] gi|225785568|gb|ACO25786.1| putative integrase/recombinase [Bacillus cereus 03BB102] gi|227007973|gb|ACP17715.1| integrase/recombinase, putative [Bacillus anthracis str. CDC 684] gi|229269433|gb|ACQ51069.1| integrase/recombinase, putative [Bacillus anthracis str. A0248] gi|300379300|gb|ADK08203.1| integrase/recombinase, putative [Bacillus cereus biovar anthracis str. CI] Length = 347 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|319760125|ref|YP_004124064.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317119731|gb|ADV02219.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 323 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++AH LRH+ A L+ NG L+ + +L H L+TT IY +++ R+ D Sbjct: 261 SSAHALRHTLACRLVENGSSLKEVADLLRHRSLNTTLIYAKLDTLRIPRKLD 312 >gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14] gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14] Length = 404 Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDR 392 >gi|44004569|ref|NP_982238.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987] gi|208702025|ref|YP_002267328.1| integrase/recombinase, putative [Bacillus cereus H3081.97] gi|217956830|ref|YP_002335924.1| integrase/recombinase, putative [Bacillus cereus AH187] gi|42741635|gb|AAS45080.1| integrase/recombinase, putative [Bacillus cereus ATCC 10987] gi|208657880|gb|ACI30250.1| integrase/recombinase, putative [Bacillus cereus H3081.97] gi|217068527|gb|ACJ82775.1| putative integrase/recombinase [Bacillus cereus AH187] Length = 347 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 329 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FA+H + GG++ ++Q ILGH+ L+ T Y +++ Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSP 313 >gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 349 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH T LL G D+R +Q I+ H+ +STT YT V + + E + +P Sbjct: 281 TPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQVPTHKTSEAVSRLNP 335 >gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 S T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 311 SITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358 >gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 430 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F T LS G + SI ++GH+ +S+TQ+Y V ++ E D+ + K+K Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSAKEK 409 Query: 66 K 66 + Sbjct: 410 E 410 >gi|221642149|ref|YP_002533236.1| integrase/recombinase, putative [Bacillus cereus Q1] gi|221243084|gb|ACM15793.1| integrase/recombinase, putative [Bacillus cereus Q1] Length = 347 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp] gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp] Length = 335 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FA+H + GG++ ++Q ILGH+ L+ T Y +++ Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSP 313 >gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13] gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 338 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 26/36 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T HTLR++FA L +GGD+ ++ +LGHS + TTQ Sbjct: 274 TPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQ 309 >gi|326943329|gb|AEA19224.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43] Length = 347 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574] gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574] Length = 409 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPRKLFEEFDR 397 >gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1] gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1] gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 386 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373 >gi|260642507|ref|ZP_05859421.1| integrase [Bacteroides finegoldii DSM 17565] gi|260621741|gb|EEX44612.1| integrase [Bacteroides finegoldii DSM 17565] Length = 132 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RH+FAT LS G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 68 SPHLARHTFATLALSKGMPLETLQKVLGHKTIISTQVYAGLINPKIGEDTDRMREKI 124 >gi|109644368|ref|YP_659398.1| phage integrase/recombinase xerD [Haloquadratum walsbyi DSM 16790] gi|109627335|emb|CAJ51091.1| phage integrase/recombinase xerD [Haloquadratum walsbyi DSM 16790] Length = 184 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++ T + +NG + I+ +GH+ LST+Q Y + +R+ DQ Sbjct: 129 TPHVLRHTYGTQIAANGASAQFIKQTMGHTDLSTSQQYIEYSGRRIHREADQ 180 >gi|10956351|ref|NP_052799.1| hypothetical protein pxo1_103 [Bacillus anthracis] gi|21392858|ref|NP_652938.1| integrase/recombinase, putative [Bacillus anthracis str. A2012] gi|47566494|ref|YP_022446.1| integrase/recombinase [Bacillus anthracis str. 'Ames Ancestor'] gi|208743354|ref|YP_002267805.1| integrase/recombinase, putative, (pxo1-103) [Bacillus cereus] gi|4894320|gb|AAD32408.1| pXO1-103 [Bacillus anthracis] gi|20520245|gb|AAM26127.1| putative integrase/recombinase [Bacillus anthracis str. A2012] gi|47552309|gb|AAT35474.1| integrase/recombinase, putative [Bacillus anthracis str. 'Ames Ancestor'] Length = 317 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 260 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 304 >gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 409 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF+T + L NG + ++ +LGH+ + TTQ+Y V K++ E D+ Sbjct: 347 HMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKKLFEDMDK 397 >gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] Length = 386 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373 >gi|317505161|ref|ZP_07963098.1| putative tyrosine type site-specific recombinase [Prevotella salivae DSM 15606] gi|315663721|gb|EFV03451.1| putative tyrosine type site-specific recombinase [Prevotella salivae DSM 15606] Length = 422 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973] gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973] Length = 306 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 242 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 291 >gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia goodfellowii F0264] gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia goodfellowii F0264] Length = 323 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H+LRH+FAT + +G D +++ ILGH+ ++TT +E+Y THP I K K Sbjct: 265 HSLRHTFATTAIESGIDYKTVSEILGHASVNTT-----------LELY--THPKIEHKKK 311 >gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] Length = 382 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+FA L+ GGD+ ++ +LGH+ +++TQ+Y + Sbjct: 326 HTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADA 364 >gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12] gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12] gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12] Length = 393 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ Sbjct: 334 HTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNI 372 >gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 419 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 386 >gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 276 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FA HL IQ +LGH +++T+IYT + + YDQ Sbjct: 225 HTLRHTFAAHLAEKNMPQSYIQELLGHVNINSTRIYTRLMEHARKKKYDQ 274 >gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003] gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003] Length = 409 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGH+++ TTQ Y ++ Sbjct: 346 HDLRHTFASLLVSGGASLEMIGRLLGHTQIGTTQRYAHL 384 >gi|228943081|ref|ZP_04105576.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975868|ref|ZP_04136397.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783831|gb|EEM31881.1| Phage integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816610|gb|EEM62740.1| Phage integrase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 351 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA HL+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 294 TPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 338 >gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 248 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 186 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDK 236 >gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108] gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108] Length = 340 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGHS + T Y Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYA 317 >gi|197284170|ref|YP_002150042.1| fimbriae recombinase [Proteus mirabilis HI4320] gi|6453632|emb|CAB61438.1| MrpI [Proteus mirabilis HI4320] gi|194681657|emb|CAR40716.1| fimbriae recombinase [Proteus mirabilis HI4320] Length = 188 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 30/54 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT NSKR + +++ Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKRFINMWE 183 >gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602] gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602] Length = 332 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314 >gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4] gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4] Length = 386 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373 >gi|228470638|ref|ZP_04055494.1| integrase [Porphyromonas uenonis 60-3] gi|288801873|ref|ZP_06407315.1| integrase [Prevotella melaninogenica D18] gi|299143044|ref|ZP_07036165.1| integrase [Prevotella oris C735] gi|228307646|gb|EEK16625.1| integrase [Porphyromonas uenonis 60-3] gi|288335915|gb|EFC74348.1| integrase [Prevotella melaninogenica D18] gi|298575495|gb|EFI47380.1| integrase [Prevotella oris C735] Length = 417 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P + Sbjct: 353 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLA 411 >gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 TAH LRH+ AT ++ G L +I ++LGH L+ T +Y + + + E Y Sbjct: 455 TAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQY 504 >gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 TAH LRH+ AT ++ G L +I ++LGH L+ T +Y + + + E Y Sbjct: 455 TAHQLRHTLATQAINRGMSLDAIAALLGHKTLAMTMVYARIADRTVAEQY 504 >gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 386 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH++AT +++G D+ ++ ++GH + TTQIYT + ++ E Sbjct: 331 TFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKRE 378 >gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638] gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638] Length = 341 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q ILGHS + T Y + Sbjct: 275 HVLRHTFASHFMMNGGNILVLQQILGHSTILMTMRYAH 312 >gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 371 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 HTLRH+F T L G DL +Q++LGH+ + TT Y ++ + +D I + Sbjct: 313 HTLRHTFGTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAHVKAEFDAARARIRDR 370 >gi|319642758|ref|ZP_07997399.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|317385613|gb|EFV66551.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 287 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LG+S + TTQIY V KR+ E D+ Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDR 275 >gi|303235730|ref|ZP_07322337.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484177|gb|EFL47165.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 422 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 409 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397 >gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B] gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B] Length = 403 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RHSFAT +S G + S+ +LGH+ + TTQIY + ++ E D Sbjct: 342 TFHVARHSFATLSISYGVPIESVSKMLGHTNIRTTQIYAKIIDTKLSEDMD 392 >gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] Length = 329 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + G D+R+++ ILGH+ +STTQIYT+++ + + Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIYTHLDDEDL 315 >gi|224024656|ref|ZP_03643022.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM 18228] gi|224017878|gb|EEF75890.1| hypothetical protein BACCOPRO_01384 [Bacteroides coprophilus DSM 18228] Length = 416 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+S G + SI ++GHS + TTQ Y V K++ Sbjct: 339 HQSRHSFGTFLISEGIPIESIAKMMGHSGIRTTQRYAEVTDKKI 382 >gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 326 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 STT H+LRH+FAT L+ + DL + +LGH ++TTQIY ++++ DQ Sbjct: 264 STTPHSLRHTFATRYLARHPHDLVGLARLLGHRSITTTQIYIQPTAEQLAARVDQ 318 >gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 286 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + + N GD+ + ILGH + TT+IY + +S +I +Q Sbjct: 233 HSFRHRFAKNFIENCGDISMLSDILGHESIETTRIYLHRSSTEQKQIVNQ 282 >gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] Length = 399 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H+LRH+ A+ LL NG D+R+IQ LGH+ + TT IY +V R Sbjct: 332 TVFHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIYGSVMPGR 378 >gi|332829726|gb|EGK02372.1| hypothetical protein HMPREF9455_01642 [Dysgonomonas gadei ATCC BAA-286] Length = 407 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T LLS G + S+ ++GH+ ++TTQ+Y + +++ + D+ Sbjct: 339 HQSRHSFGTLLLSAGVSIESVAKMMGHANINTTQVYAQITEQKISQDMDK 388 >gi|304384215|ref|ZP_07366630.1| integrase [Prevotella marshii DSM 16973] gi|325270615|ref|ZP_08137213.1| integrase [Prevotella multiformis DSM 16608] gi|325853943|ref|ZP_08171459.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|304334716|gb|EFM00994.1| integrase [Prevotella marshii DSM 16973] gi|324987010|gb|EGC18995.1| integrase [Prevotella multiformis DSM 16608] gi|325484280|gb|EGC87210.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P + Sbjct: 353 TYHMARHTFASQMTLSKGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLA 411 >gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259] gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259] Length = 409 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEVGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397 >gi|254883690|ref|ZP_05256400.1| transposase [Bacteroides sp. 4_3_47FAA] gi|254836483|gb|EET16792.1| transposase [Bacteroides sp. 4_3_47FAA] Length = 287 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LG+S + TTQIY V KR+ E D+ Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDR 275 >gi|163801694|ref|ZP_02195592.1| Integrase [Vibrio sp. AND4] gi|159174611|gb|EDP59413.1| Integrase [Vibrio sp. AND4] Length = 343 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRHSFA+H + NG ++ ++ ILGHS +S T Y Sbjct: 286 ASHVLRHSFASHFMMNGDNILVLRDILGHSDISMTMRYA 324 >gi|121593736|ref|YP_985632.1| phage integrase family protein [Acidovorax sp. JS42] gi|120605816|gb|ABM41556.1| phage integrase family protein [Acidovorax sp. JS42] Length = 565 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55 T H RH+ ATHLL G +L +++ L H+ L+TT +Y + +++R ++ D+ Sbjct: 507 TPHWTRHTHATHLLEGGAELTTVRDNLRHASLATTSMYLHTDDARRAKQVADR 559 >gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15] gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15] Length = 313 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H+ RH FA L+ NG D+ IQ +LGH+ + TT++Y Sbjct: 251 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 291 >gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+ ++ G DL+++Q +LGH TT+IY ++ + E Sbjct: 231 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLAPHHLKE 276 >gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1] Length = 290 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS+ THL+ +R +Q +GH+ STT IYT V+++ Sbjct: 228 HCLRHSYVTHLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNE 269 >gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC] gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC] Length = 410 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+F T L+ +G +++ IQ LGHS + TT IY +V + + + + IT+ Sbjct: 349 SCHTLRHTFTTRLIESGMNIKVIQEALGHSDIQTTLDIYADVTKELKQQQFTKFEDFITK 408 >gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A] gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus reuteri SD2112] gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A] gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus reuteri SD2112] Length = 410 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+F T L+ +G +++ IQ++LGHS + TT IY +V + ++Q I++ Sbjct: 349 SCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQTTLNIYADVTRDMKNQQFNQLEDFISK 408 >gi|28377499|ref|NP_784391.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1] gi|28270331|emb|CAD63232.1| prophage Lp1 protein 1, integrase [Lactobacillus plantarum WCFS1] Length = 400 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH FAT L+NG + LGHS L TQ YT N + + +++ P++ Sbjct: 333 TPHIFRHYFATMALTNGQVATDVMHWLGHSSLQMTQSYTRENVRGALNVFNGMAPTL 389 >gi|317470459|ref|ZP_07929847.1| phage integrase [Anaerostipes sp. 3_2_56FAA] gi|316901974|gb|EFV23900.1| phage integrase [Anaerostipes sp. 3_2_56FAA] Length = 432 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 3/44 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H LRH+F ++LLSNG + +Q +LGHS +STT IY +SKR Sbjct: 374 HMLRHTFTSNLLSNGAAPKDVQELLGHSDVSTTMNIYA--HSKR 415 >gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486] gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486] Length = 339 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G L S+Q +LGH+ + TTQ+Y ++ Sbjct: 243 HVLRHTFATRALRLGISLPSLQRLLGHTDIRTTQVYLHL 281 >gi|295698025|ref|YP_003602682.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060137|gb|ADF64874.1| putative Integrase/recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 325 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LR +FAT +L NG DL +++ +GH+ ++TTQ Y R+ D+ Sbjct: 272 HDLRRTFATSMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLRTARDR 321 >gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565] gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565] Length = 291 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 222 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 268 >gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4] gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4] Length = 341 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T Y + Sbjct: 284 HILRHTFASHFMMNGGNILVLKQILGHSDIKDTMRYAH 321 >gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 451 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+F +HL G ++IQ + GH L+TTQ Y +++ Sbjct: 336 HILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLS 375 >gi|238785298|ref|ZP_04629288.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC 43970] gi|238713811|gb|EEQ05833.1| hypothetical protein yberc0001_36180 [Yersinia bercovieri ATCC 43970] Length = 256 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T RHSFA HL+ +G + +Q+ +GH ++T++YT + Sbjct: 188 TPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 228 >gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253] Length = 392 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H +RH+FAT L+ +G D+ +I+ +LGHS + T+ Y Sbjct: 336 TIHEMRHTFATKLIESGADIHTIKDLLGHSTIKVTERY 373 >gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] Length = 418 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V Sbjct: 358 TYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKV 398 >gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] Length = 335 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ + NGG++ ++Q ILGH+ + T +Y ++ Sbjct: 277 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHL 315 >gi|288927810|ref|ZP_06421657.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330644|gb|EFC69228.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 414 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + S+ S+LGH +S+TQIY + ++++ Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 390 >gi|29826699|ref|NP_821333.1| integrase/recombinase [Streptomyces avermitilis MA-4680] gi|29603795|dbj|BAC67868.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 380 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHS+ TH + +G D IQ +GH STT +YT V+ + + S Q+D Sbjct: 310 HCLRHSYVTHSIEDGADPVFIQQQVGHEYASTTALYTGVSGDFANTMMRKAIDSALQRDL 369 Query: 66 KN 67 ++ Sbjct: 370 QD 371 >gi|307564902|ref|ZP_07627425.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307346388|gb|EFN91702.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 135 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 65 HMGRHTFGTMCLSAGVPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 114 >gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168] gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168] Length = 326 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRH+FA+ + NGG++ ++Q I+GH+ + T +Y ++ Sbjct: 266 STHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHL 306 >gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 309 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ Sbjct: 238 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHL 276 >gi|187778276|ref|ZP_02994749.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC 15579] gi|187771901|gb|EDU35703.1| hypothetical protein CLOSPO_01868 [Clostridium sporogenes ATCC 15579] Length = 358 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH++AT L+S+G D +++ +LGH+ T + Y++VN M Sbjct: 302 TIHELRHTYATKLISHGLDFKTVARLLGHTVEQTMRTYSHVNDDMM 347 >gi|325853963|ref|ZP_08171479.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484300|gb|EGC87230.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 414 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + S+ S+LGH +S+TQIY + ++++ Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 390 >gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 300 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RH+FA + L NGGD+ ++Q+ILGH L + Y + + ++ + P Sbjct: 242 HRFRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQTDINGVHQRASP 294 >gi|222080265|ref|YP_002540129.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738910|gb|ACM39689.1| integrase/recombinase [Agrobacterium vitis S4] Length = 109 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS A HL G L I+ ILGH LSTT+IY +++ + + + + + Sbjct: 32 SPHILRHSKAMHLYEAGIPLPYIRDILGHVDLSTTEIYARASTEAKRKALEAAYVDVISE 91 Query: 64 D 64 D Sbjct: 92 D 92 >gi|171057459|ref|YP_001789808.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774904|gb|ACB33043.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 417 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T +H LRH+ A LL++G L+ + +L H L+TT IY ++S+ + + Sbjct: 359 TRSHLLRHTMANRLLASGSTLKEVADVLRHRSLNTTMIYAKLDSRSLAAV 408 >gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 427 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHP 58 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V +K M + H Sbjct: 344 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHT 403 Query: 59 SITQK 63 + +K Sbjct: 404 RVLRK 408 >gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + T HT RHS A LL+ G D+ ++ ILGH + +TQ+Y + K+ Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRSTQVYAKIVDKK 368 >gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 386 Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 330 TFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373 >gi|227357956|ref|ZP_03842298.1| fimbriae recombinase [Proteus mirabilis ATCC 29906] gi|227161691|gb|EEI46723.1| fimbriae recombinase [Proteus mirabilis ATCC 29906] Length = 205 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 30/54 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT NSKR + +++ Sbjct: 147 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSKRFINMWE 200 >gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] Length = 396 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612] gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612] Length = 303 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 25/36 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRHSFAT L G D+R++ +LGHS ++ T Sbjct: 245 VTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAFT 280 >gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 423 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RHSFAT + LSNG + ++ S+LGH + TTQ+Y + +++ Sbjct: 343 SWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKL 389 >gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] Length = 386 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 330 TFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDK 373 >gi|288928584|ref|ZP_06422431.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288331418|gb|EFC70002.1| LOW QUALITY PROTEIN: integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 321 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 257 HCARHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKL 300 >gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 340 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + +E + +P T DK Sbjct: 279 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHF-APDHLEDAVKLNPLATSGDK 337 >gi|260171385|ref|ZP_05757797.1| transposase [Bacteroides sp. D2] gi|315919698|ref|ZP_07915938.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693573|gb|EFS30408.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 308 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ ILGHS +STT +++Y HP++ QK K Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVILGHSNISTT-----------LDLY--VHPNMEQKKK 298 >gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4] gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12] gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12] gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4] gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12] Length = 419 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 350 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396 >gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1] gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1] Length = 337 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGHS + T Y + Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 317 >gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] Length = 387 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V +K M + H Sbjct: 303 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEH 362 Query: 58 PSITQK 63 + +K Sbjct: 363 TRVLRK 368 >gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R] Length = 419 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 350 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396 >gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18] gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18] Length = 328 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHP 58 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V +K M + H Sbjct: 245 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHT 304 Query: 59 SITQK 63 + +K Sbjct: 305 RVLRK 309 >gi|284112236|ref|ZP_06386560.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3] gi|283829717|gb|EFC34040.1| Tyrosine recombinase [Candidatus Poribacteria sp. WGA-A3] Length = 259 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LR SFA + GD+ +Q +LGH +STTQ Y VN Sbjct: 146 HSLRKSFAQRVYEESGDIYLVQELLGHRNVSTTQKYIGVN 185 >gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA] gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA] Length = 409 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 M H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 342 MDLVYHVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDK 397 >gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM 18228] gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM 18228] Length = 409 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 M H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 342 MDLVYHVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDK 397 >gi|150019810|ref|YP_001312064.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149906275|gb|ABR37108.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 312 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FA + N GD+ +Q IL HS L + Y N+ +K + + +++ +P Sbjct: 244 TGIHRWRHTFAKQWILNHGDIIRLQKILNHSDLDMVRNYVNMFTKDLQQDFEEFNP 299 >gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14] gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14] Length = 396 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735] gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735] Length = 427 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHP 58 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V +K M + H Sbjct: 344 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHT 403 Query: 59 SITQK 63 + +K Sbjct: 404 RVLRK 408 >gi|160887306|ref|ZP_02068309.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483] gi|156107717|gb|EDO09462.1| hypothetical protein BACOVA_05324 [Bacteroides ovatus ATCC 8483] Length = 308 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ ILGHS +STT +++Y HP++ QK K Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVILGHSNISTT-----------LDLY--VHPNMEQKKK 298 >gi|186474388|ref|YP_001863359.1| integrase family protein [Burkholderia phymatum STM815] gi|184198347|gb|ACC76309.1| integrase family protein [Burkholderia phymatum STM815] Length = 421 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 +AH LRHS +H+ DLR ++ LGH+ L+TT +Y + + R D+ H Sbjct: 364 SAHWLRHSAGSHMADRQVDLRLVRDNLGHASLATTSLYLHADDDRRHHETDEKH 417 >gi|288926489|ref|ZP_06420408.1| integrase [Prevotella buccae D17] gi|288336701|gb|EFC75068.1| integrase [Prevotella buccae D17] Length = 66 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 3 RHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKI 43 >gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 382 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H+LRH+ AT LL G +++ IQ LGHS+ STT +Y++V +K Sbjct: 318 HSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVTAK 360 >gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 411 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +AH+LRH+F T L +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 351 SAHSLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFE 402 >gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H LRH+ AT L +G D+ +IQ +LGH+ STTQIY + + Y Q Sbjct: 275 SVYPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYAETSLDNLKHEYKQ 328 >gi|134098886|ref|YP_001104547.1| phage-related integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133911509|emb|CAM01622.1| phage-related integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 374 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+LR S+AT+L+ +G D +Q LGH STT +YT V+S Sbjct: 309 HSLRRSYATYLIEDGYDPLFVQFQLGHEHASTTSLYTCVSS 349 >gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] Length = 355 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 T H LRH+ AT + G D+R++Q +LGH +STT+IYT++ Sbjct: 294 TVHKLRHTAATLMYKYGQVDIRTLQKVLGHENVSTTEIYTHI 335 >gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 390 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T H+LRH++AT L G L+++Q +LGHS + T IYT+V Sbjct: 332 TRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHV 374 >gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM 17393] gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM 17393] Length = 432 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 363 TYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 409 >gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ ILGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKILGHRFISTTELYAKVSKSKI 390 >gi|304382840|ref|ZP_07365323.1| integrase [Prevotella marshii DSM 16973] gi|304336025|gb|EFM02272.1| integrase [Prevotella marshii DSM 16973] Length = 409 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 TAH RH+FAT + L NG + ++ +LGHS++ TT+ Y +V K++ + + Sbjct: 345 TAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAHVTPKKVFDEF 395 >gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198] gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198] Length = 354 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 27/41 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRHSFAT L DL +Q LGH+ L T++IYT+ + Sbjct: 300 AHMLRHSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFD 340 >gi|114566279|ref|YP_753433.1| integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337214|gb|ABI68062.1| putative integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 171 Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 31/45 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH+LRHS AT++L N + I +++GH TT+IY +V+ +++ Sbjct: 107 AHSLRHSLATNMLKNNVSMPVISTVMGHQSTETTKIYLSVDIEKL 151 >gi|332885866|gb|EGK06112.1| hypothetical protein HMPREF9456_02376 [Dysgonomonas mossii DSM 22836] Length = 409 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + ++ +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMSRHSFASLITLEAGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDK 397 >gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] Length = 326 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + G D++ +Q ILGH +STTQIYT+V++ + ++ + Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRSAVNKNPLNTLN 319 Query: 63 KDKKN 67 D KN Sbjct: 320 NDLKN 324 >gi|32451217|emb|CAD55723.1| putative integrase [Bacteroides coprosuis] Length = 192 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 AH RH+ ATH + +G + I +LGHS L+TT Y ++ +++ + + H + K Sbjct: 112 AHIFRHAKATHWMDDGMQIVQISYLLGHSNLNTTMKYLDITTEQEIRALETLHDEGSNKI 171 Query: 65 KKN 67 K+N Sbjct: 172 KRN 174 >gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 409 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSYVSMTERYAKVTPQKLFEEFDR 397 >gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 380 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + T HT RHS A LL+ G D+ ++ ILGH + TQ+Y + K+ Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKK 368 >gi|145301497|ref|YP_001144336.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449] gi|142856379|gb|ABO92588.1| resolvase [Aeromonas salmonicida subsp. salmonicida A449] Length = 256 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FA HLL G ++ +Q+ LGH L +T++YT V Sbjct: 188 TPHVFRHAFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQV 229 >gi|158311904|ref|YP_001504412.1| integrase family protein [Frankia sp. EAN1pec] gi|158107309|gb|ABW09506.1| integrase family protein [Frankia sp. EAN1pec] Length = 373 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQT 56 H+LR S+ THL+ +G D +Q +GH STT IY V+S + + DQT Sbjct: 307 HSLRRSYVTHLIEDGYDALFVQQQVGHEHASTTAIYICVSSDFRTRTLRRALDQT 361 >gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6] gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6] Length = 396 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 419 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT LS+ D+ ++ +LGH+ + TTQIY V Sbjct: 357 TYHCFRHTFATLQLSSSTDIYTVSKMLGHTNVKTTQIYAKV 397 >gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952] gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952] Length = 325 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H+ RH FA L+ NG D+ IQ +LGH+ + TT++Y Sbjct: 263 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVY 303 >gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302] gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302] Length = 409 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDK 397 >gi|237721193|ref|ZP_04551674.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|253571057|ref|ZP_04848465.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|229450028|gb|EEO55819.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|251840006|gb|EES68089.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 434 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH R+ TTQ+Y V K++ E Sbjct: 344 TFHKARHNFGTHITLSMGIPIETVGKMMGHMRIETTQLYAKVTDKKVDE 392 >gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 352 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RH+ AT L GGD+R +Q +LGH+ L YT+++ + ++ +D+ P Sbjct: 283 PHLFRHTGATMFLEAGGDIRHLQMLLGHADLRMVMRYTHLSKQALINQHDKFSP 336 >gi|187776712|ref|ZP_02993185.1| hypothetical protein CLOSPO_00227 [Clostridium sporogenes ATCC 15579] gi|187775371|gb|EDU39173.1| hypothetical protein CLOSPO_00227 [Clostridium sporogenes ATCC 15579] Length = 76 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+IY +K+ ++Y Sbjct: 19 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 66 >gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 418 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+S G + SI ++GHS +STTQ Y + ++ Sbjct: 339 HAARHSFGTFLISAGLPIESIAKMMGHSNISTTQGYARITDDKI 382 >gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 413 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LSNG + S+ +LGH+ + TTQIY V ++ E Sbjct: 352 TFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSE 400 >gi|293373253|ref|ZP_06619613.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631776|gb|EFF50394.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 441 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH R+ TTQ+Y V K++ E Sbjct: 351 TFHKARHNFGTHITLSMGIPIETVGKMMGHMRIETTQLYAKVTDKKVDE 399 >gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 409 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I S+LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC 29328] gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328] gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] Length = 326 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRH+ AT + G D++ +Q ILGH +STTQIYT+V++ Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303 >gi|241589939|ref|YP_002979964.1| integrase family protein [Ralstonia pickettii 12D] gi|240868651|gb|ACS66310.1| integrase family protein [Ralstonia pickettii 12D] Length = 733 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRH+F +H ++ G L + + LGH+ +STT IY+ + R Sbjct: 674 TTHWLRHTFGSHAVAGGMALETARQFLGHASISTTGIYSVADIAR 718 >gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 393 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS A++++++G + + +LGHS+L TTQ Y +++ + ++ D Sbjct: 327 HDLRHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLAAVD 375 >gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] Length = 326 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRH+ AT + G D++ +Q ILGH +STTQIYT+V++ Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDN 303 >gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] Length = 390 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+F T +L+ G DL + ++GHS + TT+IY + K+ E Sbjct: 335 HCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEE 380 >gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 392 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F +HL G R IQ + GH+ L TTQ Y +++ Sbjct: 309 HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLS 348 >gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC 43183] gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I S+LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 333 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT L +G I +LGH+ L+++Q Y V + + E Sbjct: 268 HALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTAVQQRE 313 >gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + GG++ +Q ILGH+ + T Y + + E Sbjct: 281 SHVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTE 327 >gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 314 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-----IYTNVNSKRMMEIYDQ 55 + + HTLRHSFATHLL G D + +LG+ +S Q +Y V + E++ Sbjct: 248 VGVSPHTLRHSFATHLLDGGADAGVVHQLLGN--VSAEQGRGGRMYALVTQGLLTEVHAM 305 Query: 56 THP 58 HP Sbjct: 306 AHP 308 >gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 398 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H+LRH+ AT LLS+G +++++Q LGH +L T +YT+V K Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTDK 382 >gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 395 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 AH RH+FA+ L++ G L ++ +LGHS + TT YT+ ++ Sbjct: 343 AHCFRHTFASRLIAKGAPLTVVKKMLGHSNIQTTMRYTHTQDEQ 386 >gi|229826953|ref|ZP_04453022.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC 49176] gi|229788571|gb|EEP24685.1| hypothetical protein GCWU000182_02337 [Abiotrophia defectiva ATCC 49176] Length = 70 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 29/38 (76%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 RH+F THL NG DL +I++++GH L++T IY ++++ Sbjct: 14 RHAFGTHLYENGTDLLTIKALMGHKSLNSTTIYVHLSA 51 >gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H+LRH+ AT LL G +++ IQ LGHS+L+TT +Y++V K Sbjct: 324 HSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTKK 366 >gi|227494283|ref|ZP_03924599.1| possible site specific recombinase [Actinomyces coleocanis DSM 15436] gi|226832017|gb|EEH64400.1| possible site specific recombinase [Actinomyces coleocanis DSM 15436] Length = 286 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH F T + D+ ++Q ILGH+ +TT+ Y V + R+ E+ Sbjct: 233 TLHMLRHRFGTVAYNRSKDIAAVQDILGHTNPATTRRYIAVENSRLREV 281 >gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 392 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F +HL G R IQ + GH+ L TTQ Y +++ Sbjct: 309 HTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLS 348 >gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 31/41 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+F ++L+ +G D+ ++ I+GH LSTTQ YT++++ Sbjct: 297 HDLRHTFCSNLVQSGMDVSVVRMIMGHEHLSTTQKYTHLSN 337 >gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 384 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H+ RH+FA L NG D+ ++ +LGH + T IY ++ K+ E + P ++ Sbjct: 326 TFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELS 383 >gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 413 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 30/40 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRH+FA+ L+ G DL S++ ++GH LS T+ Y++++ Sbjct: 337 HSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLS 376 >gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22] gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22] Length = 281 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHS+AT LS G + +I LGH +STTQIY ++ ++ E Sbjct: 207 TYHMARHSYATLCLSMGVPIETISQTLGHRSISTTQIYADITRTKINE 254 >gi|169544213|ref|YP_001692988.1| hypothetical protein pYE854_p045 [Yersinia enterocolitica] gi|168218397|emb|CAP20140.1| hypothetical protein [Yersinia enterocolitica] Length = 256 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T RHSFA HL+ +G + +Q+ +GH ++T++YT + Sbjct: 188 TPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 228 >gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae] Length = 318 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LR S+A+ LL NG D+ +++ LGH+ + TTQ Y + KR+ Sbjct: 260 TPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 305 >gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp. 3_1_5R] gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R] gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R] Length = 371 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H++RHSFAT L ++++Q ++GHS ++TT IYT+V Sbjct: 317 HSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTHV 356 >gi|254453108|ref|ZP_05066545.1| phage integrase [Octadecabacter antarcticus 238] gi|198267514|gb|EDY91784.1| phage integrase [Octadecabacter antarcticus 238] Length = 426 Score = 42.7 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGH+++ TTQ Y ++ Sbjct: 357 HDLRHTFASLLVSGGASLEMIGRLLGHTQMQTTQRYAHL 395 >gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 388 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+ L G DL I +LGHS + TT Y ++ + + DQ I+ Sbjct: 323 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRIS 378 >gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608] gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608] Length = 414 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDIDR 399 >gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] Length = 401 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 27/33 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+ AT LL +G +++ IQ+ LGHSR++TT Sbjct: 339 HSLRHTHATMLLEHGANIKDIQARLGHSRIATT 371 >gi|146301442|ref|YP_001196033.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155860|gb|ABQ06714.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 305 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHS A+HL+ + I+ LGHS+++TT IY N ++ Sbjct: 255 TLHCLRHSIASHLMEKNAGIDFIRGFLGHSQINTTYIYAVKNKRK 299 >gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 321 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + G D+RS+Q +LGH + TT+IYT+V+ +++ Sbjct: 263 SVHKLRHTAATLMYQYGDVDIRSLQKVLGHESVQTTEIYTHVSDEQV 309 >gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 460 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/33 (60%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT LL NG D++S+Q+ LGHSR S T Sbjct: 389 HELRHTQATMLLGNGIDVKSVQTRLGHSRASVT 421 >gi|189463527|ref|ZP_03012312.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM 17136] gi|189429764|gb|EDU98748.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM 17136] Length = 102 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RH+FAT LS G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 37 VSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 94 >gi|218129570|ref|ZP_03458374.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697] gi|217988300|gb|EEC54623.1| hypothetical protein BACEGG_01147 [Bacteroides eggerthii DSM 20697] Length = 416 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+S G + SI ++GHS + TTQ Y + K++ Sbjct: 339 HQSRHSFGTFLISEGIPIESIARMMGHSGIKTTQRYAEITDKKI 382 >gi|332291756|ref|YP_004430365.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169842|gb|AEE19097.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 407 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +++ RHSFAT + L++I ++LGH+RLSTTQIY +++ Y++ Sbjct: 349 SSYVSRHSFATQAMLQDVPLQAISAMLGHNRLSTTQIYLKTLPNEILDNYNR 400 >gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606] gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ M+I Q Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQIVQQ 396 >gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437] Length = 287 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+LRH F T L G + ++ I GH+ ++TT IY + + K M+E D+ Sbjct: 235 TPHSLRHFFCTRALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKSMLEKIDR 286 >gi|313897143|ref|ZP_07830688.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312958071|gb|EFR39694.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 284 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 22/43 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH FA + GG + ILGHS+L TT IYT K Sbjct: 226 PHAFRHLFAVRYIEEGGQPSDLADILGHSQLETTAIYTRTTDK 268 >gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 404 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 392 >gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 213 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH++AT L+ G DL +I +L HS ++TTQ+Y +V Sbjct: 158 TFHCFRHTYATLQLAAGTDLYTISKMLTHSNVATTQVYADV 198 >gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 349 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+F H + NGG++ +Q ILGH+ + T Y + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321 >gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 407 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 35/47 (74%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H++RH++AT L N ++++QS++GH+ ++TT IYT+V ++M + Sbjct: 350 HSMRHTYATRLFENDVPIKTVQSLMGHNDITTTMNIYTHVTPQQMTD 396 >gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 366 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNS 46 T H LRH+ AT + G D+R +Q ILGHS ++TT+IYT++++ Sbjct: 305 TPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATTEIYTHLDA 348 >gi|86740848|ref|YP_481248.1| phage integrase [Frankia sp. CcI3] gi|86742213|ref|YP_482613.1| phage integrase [Frankia sp. CcI3] gi|86567710|gb|ABD11519.1| phage integrase [Frankia sp. CcI3] gi|86569075|gb|ABD12884.1| phage integrase [Frankia sp. CcI3] Length = 411 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41 T H LRH+ A ++ +G LR Q+ILGH+ LSTTQ+Y Sbjct: 326 TMHDLRHTCAIRMVRDGRLSLRDAQTILGHAHLSTTQLY 364 >gi|296162809|ref|ZP_06845592.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886980|gb|EFG66815.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 559 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 T H +RH+ ATH L+ G L S++ L H+ +STT +Y + + +RM +I Sbjct: 500 TPHWMRHTHATHALAGGATLTSVRDNLRHASISTTSVYLDDDEVQRMRQI 549 >gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC 29799] gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC 29799] Length = 361 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 + H LRH+F T N DL+ IQ I+GH+ ++TT IY +R Sbjct: 301 SCHNLRHTFCTRFCENEKDLKVIQEIMGHADITTTMNIYNEATKER 346 >gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC 27560] gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC 27560] Length = 426 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 11/64 (17%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT L + +L++IQ I+GH+ + TT M+IY + QK Sbjct: 366 TCHQLRHTFATRLCESTSNLKAIQDIMGHANIETT-----------MDIYAEATVGTKQK 414 Query: 64 DKKN 67 +N Sbjct: 415 AIEN 418 >gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv] gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11] gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra] gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987] gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A] gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85] gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85] gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210] gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207] gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506] gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003] gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475] gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv] gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11] gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85] gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148] gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 332 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRH +AT +LR++Q +LGH+ + TT+ YT Sbjct: 279 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317 >gi|325280668|ref|YP_004253210.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312477|gb|ADY33030.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 383 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFAT L +G D+ I ++GHS L+TTQIY Sbjct: 329 TTYVARHSFATILKRSGVDIALISELMGHSDLTTTQIY 366 >gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 386 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RH+FAT LS G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 322 SPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 378 >gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 351 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +H LRH+FA+H + GG++ +Q ILGH+ + T Y++ + + E D Sbjct: 281 SHVLRHTFASHFMMAGGNILVLQRILGHTDIKMTMRYSHFSPNHLNEAID 330 >gi|298250458|ref|ZP_06974262.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297548462|gb|EFH82329.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 686 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + TAH RH+ T L G L +I +LGH+ S + +Y ++ + +++ Y Sbjct: 498 TVTAHRFRHTVGTQLAEKGARLHTIMKVLGHTSASMSMVYAQISDREVLKDY 549 >gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans 743B] gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B] Length = 311 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT++ Sbjct: 249 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHI 292 >gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 335 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314 >gi|154498614|ref|ZP_02036992.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC 29799] gi|150272353|gb|EDM99547.1| hypothetical protein BACCAP_02604 [Bacteroides capillosus ATCC 29799] Length = 285 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T HTLRH F ++ L NG + + + GHS + TT +YTN ++M E Sbjct: 231 SITPHTLRHFFCSNALENGYTIADLANQAGHSNVHTTLLYTNPTREKMKE 280 >gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185] gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185] Length = 397 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 335 HTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|153930591|ref|YP_001393280.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758] gi|152958135|gb|ABS45598.1| putative integrase/resolvase [Yersinia pseudotuberculosis IP 31758] Length = 263 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T RHSFA HL+ +G + +Q+ +GH ++T++YT + Sbjct: 195 TPKTFRHSFAMHLVQSGVAFKVVQTFMGHKDAASTEVYTRI 235 >gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 409 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14] gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14] Length = 405 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FA +L+ G D+ ++ +LGH ++TTQIY V Sbjct: 331 TYHCSRHTFAVLMLNFGADIYTVSKMLGHREIATTQIYARV 371 >gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 409 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDR 397 >gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus vaginalis ATCC 49540] gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus vaginalis ATCC 49540] Length = 292 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILG-HSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T TLRH+F LL NG +++Q++LG + + + Y N++ ++ IY + HP Sbjct: 235 TLQTLRHTFTADLLKNGASWQAVQTLLGRETGRESFESYIRFNTQELVTIYRRCHP 290 >gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492] gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19] gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492] gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19] Length = 409 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDR 397 >gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] Length = 442 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 28/40 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T H LR +FAT +++NG + +I ILGHS +TT+IY Sbjct: 353 NVTIHDLRRTFATWMINNGETVDTISQILGHSNTNTTKIY 392 >gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 485 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IYT+++ Sbjct: 424 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLD 464 >gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 363 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA+HL G L++IQ +LGHS + T Y ++ +++ Sbjct: 294 HDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLID 339 >gi|322831282|ref|YP_004211309.1| integrase family protein [Rahnella sp. Y9602] gi|321166483|gb|ADW72182.1| integrase family protein [Rahnella sp. Y9602] Length = 254 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + Sbjct: 198 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 235 >gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 324 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+FAT L +G I ++LGH+ L+T+Q Y ++ Sbjct: 260 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATAR 301 >gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto] gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto] Length = 138 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT+++ ++ Sbjct: 76 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQL 124 >gi|226349906|ref|YP_002777019.1| putative integrase/recombinase [Rhodococcus opacus B4] gi|226245821|dbj|BAH47088.1| putative integrase/recombinase [Rhodococcus opacus B4] Length = 399 Score = 42.7 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 25/41 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRHS AT LLS G L I +L H L+TT IY V+ Sbjct: 343 AHRLRHSVATTLLSEGVALADISQVLRHHDLATTAIYAKVD 383 >gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005] Length = 332 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRH +AT +LR++Q +LGH+ + TT+ YT Sbjct: 279 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317 >gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302] gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735] gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302] gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735] Length = 409 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDR 397 >gi|262383655|ref|ZP_06076791.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294553|gb|EEY82485.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ ILGH+ ++TTQ Y + ++++ Sbjct: 342 HCARHGFATLALSKGMPIESVSRILGHTNITTTQKYAKITTEKI 385 >gi|225420398|ref|ZP_03762701.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme DSM 15981] gi|225040961|gb|EEG51207.1| hypothetical protein CLOSTASPAR_06743 [Clostridium asparagiforme DSM 15981] Length = 288 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + + NGGD+ + +LGH + TT IY Sbjct: 234 PHSFRHRFAKNFIENGGDIAFLSDLLGHDSIETTHIY 270 >gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 394 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFA+ L+S G L I ++LGH+++ TTQ Y ++ + + D +I + Sbjct: 325 HDLRHSFASLLVSGGASLPIIGAMLGHTQVQTTQRYAHLYDEPLRAAADHVGKTIDMAGE 384 Query: 66 K 66 K Sbjct: 385 K 385 >gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC BAA-286] Length = 448 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + LS G + ++ +LGHS ++TTQIY + ++++ Sbjct: 343 TTHMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKI 389 >gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 364 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH++AT L+ G D+ ++ +LGH L TTQIY V Sbjct: 306 TITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKV 348 >gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC 43183] gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RH+FAT LS G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 345 SPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 401 >gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 367 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+HL+ NG DL ++ +LGH L+ T Y+++ Sbjct: 301 HDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHL 339 >gi|229521961|ref|ZP_04411378.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80] gi|229340886|gb|EEO05891.1| site-specific recombinase XerC [Vibrio cholerae TM 11079-80] Length = 233 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Query: 4 TAHTLRHSFATHLL---SNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRH++A L ++ LR +Q++LGHS LSTT IYT Sbjct: 173 TPHWLRHTWAIRFLGRTTSPDALRRVQAVLGHSNLSTTAIYT 214 >gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 395 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 HTLRH+ AT+LL G +R +Q LGHS ++ T QIY +V Sbjct: 329 HTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYGHV 368 >gi|293373254|ref|ZP_06619614.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631777|gb|EFF50395.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 411 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+ TTQ+Y V ++ Sbjct: 348 HVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 392 >gi|116686981|ref|YP_840228.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652696|gb|ABK13335.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 559 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME-IYDQTHPS 59 T H +RH+ ATH L+NG L +++ L H+ ++TT IY + V R +E I+ + P+ Sbjct: 500 TPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTRQIERIFARRPPA 559 >gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 416 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LSNG + S+ +LGH+ + TTQIY V ++ E Sbjct: 352 TFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSE 400 >gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 349 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+F H + NGG++ +Q ILGH+ + T Y + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321 >gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5] gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5] Length = 353 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FAT L +G I +LGH+ L+++Q Y V + Sbjct: 290 HALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTA 330 >gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36] gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36] Length = 341 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA++ + NGG++ +Q ILGH+ + T Y+ Sbjct: 285 HILRHTFASYFMMNGGNILVLQKILGHADIKQTMAYS 321 >gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302] gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735] gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302] gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735] Length = 414 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 399 >gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 409 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQ+Y V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDR 397 >gi|253571058|ref|ZP_04848466.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840007|gb|EES68090.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 407 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+ TTQ+Y V ++ Sbjct: 344 HVARHTYATEITLSHGVPLETVSKMLGHSRIGTTQLYAKVTDNKI 388 >gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii M21/2] gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii M21/2] Length = 498 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IYT+++ Sbjct: 437 HDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLD 477 >gi|54302550|ref|YP_132543.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9] gi|46915972|emb|CAG22743.1| hypothetical protein PBPRB0871 [Photobacterium profundum SS9] Length = 243 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T + LR + THLL G DLRS+Q +LGH+ L+TT YT + Sbjct: 177 TLNALRAHWLTHLLEQGLDLRSLQILLGHASLNTTARYTRM 217 >gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 412 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L NG + ++ +LGH+ L TTQIY+ + K++ Sbjct: 352 TFHIARHTFATTITLENGVPMETVSGMLGHASLRTTQIYSKIKKKKV 398 >gi|224025070|ref|ZP_03643436.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM 18228] gi|224018306|gb|EEF76304.1| hypothetical protein BACCOPRO_01804 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+LRHS A +L NG I ILGHS L TT Y V+ K + + Sbjct: 351 HSLRHSLAINLFENGESPSVISEILGHSNLLTTMSYVKVDLKHLRQ 396 >gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 30/40 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+++G L +Q +LGH+ +STTQ Y +++ Sbjct: 327 HDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHLS 366 >gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17] gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46] gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46] gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17] gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46] gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17] Length = 332 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRH +AT +LR++Q +LGH+ + TT+ YT Sbjct: 279 TMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYT 317 >gi|116662215|ref|YP_829270.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116612967|gb|ABK05689.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 400 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRH+FA L G L +Q +LGH +TT +Y + + ++E Y +TH S Sbjct: 318 TLHDLRHTFAIRALEGGMGLHEVQELLGHQSRTTTTVYAVPHMEEVIEHY-RTHLS 372 >gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM 16841] gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM 16841] Length = 340 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHS A HLL +L I+ +LGHS ++TT+IY ++ E ++ +P Sbjct: 261 SPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADTTLKREALEKANP 315 >gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 319 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + + HT RH+FAT L NG +QS+LGHS L T+ YT Sbjct: 255 VRCSPHTFRHTFATQALINGAGEFEVQSLLGHSTLVMTKRYT 296 >gi|301309519|ref|ZP_07215461.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300832608|gb|EFK63236.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 210 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT + +Y HP++ QK + Sbjct: 153 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 199 >gi|281423082|ref|ZP_06253995.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281402795|gb|EFB33626.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 74 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+ AT + LSNG + S+ S+LGH +S+TQIY + ++++ Sbjct: 6 HMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 50 >gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 319 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58 + HT RH+ AT + NGGDL +QS+LGH+ L+ T+ Y ++ S+ E + + P Sbjct: 258 SPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASLQSEAAAEAHKKFSP 313 >gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC 29176] gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC 29176] Length = 411 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +AH+LRH+F T L +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 351 SAHSLRHTFCTRLCERETNLKIIQSIMGHKDIQTTMDIYAEATEEKKQETFE 402 >gi|134100181|ref|YP_001105842.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338] gi|291006600|ref|ZP_06564573.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338] gi|133912804|emb|CAM02917.1| tyrosine recombinase XerC [Saccharopolyspora erythraea NRRL 2338] Length = 398 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S H+ RHS+ATH + G + R +Q LGH+ LSTT+ Y Sbjct: 329 SIHPHSARHSYATHAKNRGAEARQVQKDLGHTSLSTTEGY 368 >gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922] gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922] Length = 388 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 ++L+H A ++ +G D+ +IQ+I GHS+ TT+IY N Sbjct: 333 YSLKHKAANDMMFDGLDIETIQAIFGHSKAKTTEIYAN 370 >gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRH+ A +L+ G L + ++LGHS L+TT++Y Sbjct: 240 HTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVY 275 >gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 409 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDH 397 >gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13] gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13] Length = 414 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 + H LRH+ AT + S G DL+ IQ LGHS +STT IY + ++ + E+ Sbjct: 352 SIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEV 401 >gi|168213070|ref|ZP_02638695.1| putative phage integrase family protein [Clostridium perfringens CPE str. F4969] gi|170715383|gb|EDT27565.1| putative phage integrase family protein [Clostridium perfringens CPE str. F4969] Length = 312 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FA + NGG++ ++Q ILGHS L T+ Y N+ + + D+ +P Sbjct: 245 TGIHRYRHTFAKKWIMNGGNVVTLQKILGHSNLQITENYINLLVQDLKIEMDKYNP 300 >gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf] gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657] gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf] gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657] Length = 138 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT+++ ++ Sbjct: 76 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQL 124 >gi|56475685|ref|YP_157274.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|58616517|ref|YP_195646.1| putative integrase [Azoarcus sp. EbN1] gi|58616533|ref|YP_195662.1| putative integrase [Azoarcus sp. EbN1] gi|56311728|emb|CAI06373.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56315979|emb|CAI10622.1| putative integrase [Aromatoleum aromaticum EbN1] gi|56315995|emb|CAI10638.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 412 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 23/41 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH RH AT +L G L I +LGH TT+IYT V+ Sbjct: 356 AHQFRHGLATEMLRQGASLGEIGELLGHRHPQTTKIYTKVD 396 >gi|256824531|ref|YP_003148491.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256687924|gb|ACV05726.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] Length = 373 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHS+ THL+ +G D +Q +GH STT +YT V+ Sbjct: 309 HCLRHSYVTHLIEDGFDPLFVQQQVGHRWGSTTALYTGVS 348 >gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638] gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638] Length = 336 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + +E + +P T K++ Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHF-APDHLEDAVKLNPLSTHKEQ 335 Query: 66 K 66 + Sbjct: 336 Q 336 >gi|145595427|ref|YP_001159724.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145304764|gb|ABP55346.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 147 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 26/41 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+LR S+ THL+ G D +Q +GH STT IYT V+S Sbjct: 81 HSLRRSYVTHLIEAGWDPLFVQQEVGHEHASTTAIYTCVSS 121 >gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606] gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606] Length = 409 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ ILGHS +S T+ Y V +++ E ++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKILGHSNVSMTERYAKVTPQKLFEEFN 396 >gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM 20548] gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548] Length = 329 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + G D+R+++ ILGH +STTQIYT+++ + + Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIYTHLDDEDL 315 >gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP] gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis] Length = 274 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 28/40 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H+LR SFATH++ +G D ++I LGHS ++TT Y N Sbjct: 219 SPHSLRRSFATHMMQSGADPKTIMLQLGHSSINTTFQYVN 258 >gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7] gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7] Length = 324 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT LL G D++ + ILGHS +S T Sbjct: 268 VHALRHTFATLLLRQGTDIKVVSEILGHSDISIT 301 >gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 349 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+F H + NGG++ +Q ILGH+ + T Y + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAH 321 >gi|282877655|ref|ZP_06286470.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|307566135|ref|ZP_07628592.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|281300227|gb|EFA92581.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|307345147|gb|EFN90527.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 422 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ ILGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKILGHSNIGTTQIYGKITDHKIQE 392 >gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 404 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 3/64 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQTHPSITQ 62 T H RH+FA L+ G D+ S+ +LGHS L TT+IY ++ S+R+ + ++ P I + Sbjct: 328 TFHAGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAM--RSFPDIFE 385 Query: 63 KDKK 66 + K Sbjct: 386 EQAK 389 >gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] Length = 331 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + G D+R+++ +LGH +STTQIYT+++ + + Sbjct: 271 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDDEDL 317 >gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002] gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002] Length = 342 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH F T L DL Q+++GH +T IYT++ +++ + DQ +P Sbjct: 263 HALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRKLTKSVDQANP 315 >gi|262040799|ref|ZP_06014028.1| integrase/recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041884|gb|EEW42926.1| integrase/recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 106 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LR +FAT +L NG DL +++ +GH+ ++TTQ Y R+ D+ Sbjct: 53 HDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEARLRTARDR 102 >gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697] gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697] gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQ+Y V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDR 397 >gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160] gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160] Length = 336 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HTLRH+ THLL G D+ +I++ LGH + TT IY + Sbjct: 260 SPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETD 301 >gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1] gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1] Length = 333 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 21/38 (55%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + HTLRH+ A HLL +G DL +I LGHS +TTQ Y Sbjct: 258 SPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQY 295 >gi|281423084|ref|ZP_06253997.1| integrase [Prevotella oris F0302] gi|281402797|gb|EFB33628.1| integrase [Prevotella oris F0302] Length = 400 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF + L+S G SI ++GH+ +++TQ Y ++ K++ E D+ Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDMDK 390 >gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 342 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 38/60 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+ L +G L++I+ +LGHS + TT+IY ++ + + ++ +++ DK Sbjct: 277 HDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADHLKAAVNKLKVNVSTTDK 336 >gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] Length = 387 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V ++ Sbjct: 304 TSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKI 350 >gi|281424189|ref|ZP_06255102.1| integrase [Prevotella oris F0302] gi|281401458|gb|EFB32289.1| integrase [Prevotella oris F0302] Length = 414 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + S+ S+LGH +S+TQIY + ++++ Sbjct: 344 TWHMARHTMATVVCLSNGMPIESVSSVLGHKCISSTQIYAKITNEKL 390 >gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 349 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+F H + NGG++ +Q ILGH+ + T Y++ Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321 >gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735] gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735] Length = 409 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFER 397 >gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2] gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 409 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF++ + GG + ++ +LGHS + TTQIY V K++ E D+ Sbjct: 345 TYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDK 397 >gi|258512500|ref|YP_003185934.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479226|gb|ACV59545.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 350 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA L+ +GGDL ++ +GHS TT+ Y V + +I Q H I Sbjct: 275 HQLRHTFAIQFLVRSGGDLVTLARQMGHSSTRTTERYLAVAETKAQKILTQQHSPI 330 >gi|153871856|ref|ZP_02000919.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS] gi|152071680|gb|EDN69083.1| Type 1 fimbriae Regulatory protein fimB [Beggiatoa sp. PS] Length = 178 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ+ LGH + T IYT ++SKR + + Sbjct: 129 HMLRHACGYRLAKEGRDTRVIQAYLGHKDIRNTVIYTELSSKRFDDFF 176 >gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3] gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3] Length = 349 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+F H + NGG++ +Q ILGH+ + T Y++ Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSH 321 >gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus 98/2] gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2] Length = 291 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973] gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973] Length = 306 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 242 HMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 291 >gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528] gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528] Length = 391 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H+LRH+FAT L N L+++Q +LGHS ++ T IYT+V Sbjct: 333 HSLRHTFATRLFENNVPLKTVQMLLGHSNINITANIYTHV 372 >gi|300715658|ref|YP_003740461.1| phage integrase [Erwinia billingiae Eb661] gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661] Length = 346 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + N G++ ++ ILGH+ + T IY Sbjct: 286 HVLRHTFASHFMMNSGNILVLRQILGHTDIKMTMIYA 322 >gi|288916875|ref|ZP_06411248.1| integrase family protein [Frankia sp. EUN1f] gi|288351760|gb|EFC85964.1| integrase family protein [Frankia sp. EUN1f] Length = 476 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-------NSKRMMEIYD 54 T H LRH+ A+ L S G DL I+++L H+RL+TT IY ++ ++ M +I Sbjct: 395 TRVHDLRHTAASLLFSAGVDLNEIRALLRHTRLATTADIYVDILDEVRRSTARSMDDILT 454 Query: 55 QTH-PSITQKDK 65 + H PS T D+ Sbjct: 455 RLHRPSTTDSDE 466 >gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 353 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T H LRH+ ATHLL+ D+ +++ +LGH+ L+T Y + Sbjct: 289 AVTPHGLRHTTATHLLAAATDMDAVRRVLGHADLATLSRYRD 330 >gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970] gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970] Length = 342 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA H + +GG++ +Q ILGHS + T Y + Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAH 318 >gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 298 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+F +LL G + + ++ GHSRL T+ YT + + + E ++T Sbjct: 243 TCHKLRHTFCKNLLDAGVSIDQVAAMAGHSRLDVTKRYTVPSMQDLQEAVERT 295 >gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 342 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314 >gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] Length = 379 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT +L+ G DL ++ +LGH+ + TTQIY + Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 363 >gi|107022780|ref|YP_621107.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|105892969|gb|ABF76134.1| phage integrase [Burkholderia cenocepacia AU 1054] Length = 507 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME-IYDQTHPS 59 T H +RH+ ATH L+NG L +++ L H+ ++TT IY + V R +E I+ + P+ Sbjct: 448 TPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTRQIERIFARRPPA 507 >gi|302867667|ref|YP_003836304.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302570526|gb|ADL46728.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 353 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FAT L +G I +LGH+ L+++Q Y V + Sbjct: 290 HALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTA 330 >gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 379 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT +L+ G DL ++ +LGH+ + TTQIY + Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 363 >gi|238753441|ref|ZP_04614804.1| Integrase family protein [Yersinia ruckeri ATCC 29473] gi|238708394|gb|EEQ00749.1| Integrase family protein [Yersinia ruckeri ATCC 29473] Length = 154 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ +Q ILGHS + T Y ++ + + Sbjct: 86 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHLAPEHL 129 >gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601] gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601] gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601] gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601] Length = 334 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N+ +KR Sbjct: 257 TPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKR 303 >gi|116619764|ref|YP_821920.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222926|gb|ABJ81635.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 412 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 25/43 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T AH LRHS AT LL GG L I +L H +TT IY V+ Sbjct: 354 TGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396 >gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 407 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +S G + S+ +LGH+ + TQIY + +K++ Sbjct: 342 TFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKV 387 >gi|265756480|ref|ZP_06090686.1| integrase [Bacteroides sp. 3_1_33FAA] gi|263233668|gb|EEZ19283.1| integrase [Bacteroides sp. 3_1_33FAA] Length = 407 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH RH+F +++++G + SI ++GHS L +TQ+Y + ++ + D+ Sbjct: 336 TAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDK 387 >gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42] Length = 346 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHS+A L NG DL I LGHS L TT IY + +++ + +Q P Sbjct: 264 PHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEQAVP 317 >gi|330814554|ref|YP_004362729.1| phage integrase family protein [Burkholderia gladioli BSR3] gi|327374546|gb|AEA65897.1| phage integrase family protein [Burkholderia gladioli BSR3] Length = 559 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME-IYDQTHPS 59 T H +RH+ ATH L+NG L +++ L H+ ++TT IY + V R +E I+ + P+ Sbjct: 500 TPHWMRHTHATHALANGATLTTVRDNLRHASITTTSIYLDDDEVQRTRQIERIFARRPPA 559 >gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574] gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574] Length = 409 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFER 397 >gi|295701420|ref|YP_003610421.1| integrase [Burkholderia sp. CCGE1002] gi|295441743|gb|ADG20910.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 223 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 34/50 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++H+ R SFA++L++ G D+ ++Q +LGH+ L Y V+ KR+ +++ Sbjct: 170 SSHSGRRSFASNLIAQGHDIETVQQLLGHAELDHVLPYLAVSDKRLRQMF 219 >gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium autotrophicum HRM2] gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium autotrophicum HRM2] Length = 337 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHS A HLL +L I+ LGH + TT+IY +S+ + +P I Sbjct: 258 VTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSELKRQAIANAYPDIV 316 >gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 332 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 27/42 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + + HT RH+FAT L NG +QS+LGHS L+ T+ YT Sbjct: 268 LRCSPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYT 309 >gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 332 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHPS 59 + + HT RH+FAT L NG +QS++GHS L+ T+ Y ++NS E+ Q H Sbjct: 268 IRCSPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLNS----EVAVQGHKK 323 Query: 60 ITQKD 64 + D Sbjct: 324 FSPVD 328 >gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3] gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3] Length = 390 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 +AH LRHS +H+ DLR I+ LGH+ ++TT +Y + + + +Q H Sbjct: 333 SAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDDRHQKTEQKH 386 >gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 367 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HTLRH+ A+ L+ G D+R++Q ILGH L+ T Y++++ + + Sbjct: 292 HTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLTQ 337 >gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 351 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 30/47 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +H LRH+FA+H + GG++ +Q ILGH+ + T Y++ + + E Sbjct: 284 SHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYSHFSPDHLDE 330 >gi|150006222|ref|YP_001300966.1| integrase [Bacteroides vulgatus ATCC 8482] gi|149934646|gb|ABR41344.1| integrase [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH RH+F +++++G + SI ++GHS L +TQ+Y + ++ + D+ Sbjct: 336 TAHVARHTFGVNMVTSGISMESIAKMMGHSNLRSTQVYAVITDDKISKDMDK 387 >gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186] Length = 336 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314 >gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3] gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3] Length = 379 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSFA L+ G + S+ ILGH+ + TTQIY V + ++ Sbjct: 319 HLSRHSFAVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKL 362 >gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319] gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319] Length = 414 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 350 HMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 399 >gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 325 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ ++ ILGH+ + T Y + Sbjct: 267 HVLRHTFASHFMMNGGNILVLKDILGHTSIQMTMRYAH 304 >gi|23012392|ref|ZP_00052489.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 127 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + + LRH F H L +G L +Q LGH+ LSTT IY +V EI Sbjct: 72 AASPKGLRHGFGVHALRSGVPLTLLQRWLGHASLSTTAIYADVLGAEEREI 122 >gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200] gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200] Length = 362 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354 >gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus AH1134] gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus AH1134] Length = 332 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSIEVTSIYTNINNEKKREAVDR 325 >gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 390 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+ L G DL I +LGHS + TT Y ++ + + DQ I+ Sbjct: 325 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRIS 380 >gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 368 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H +RH+FAT L G D+++I +LGHS +S T NV S +ME Sbjct: 312 HAIRHTFATRALEMGVDVKTISELLGHSSVSIT---LNVYSHSLME 354 >gi|288926555|ref|ZP_06420473.1| integrase [Prevotella buccae D17] gi|288336697|gb|EFC75065.1| integrase [Prevotella buccae D17] Length = 409 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDR 397 >gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 334 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS A H L+ GD+R + LGH+ + +T+ Y + + ++I Sbjct: 254 TPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQI 302 >gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 406 Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ M+I Q Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQIVQQ 396 >gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 421 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+H RH+FAT + L+NG + ++ +LGH+ + TTQIY V +++ Sbjct: 352 TSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKV 398 >gi|260909874|ref|ZP_05916564.1| mobilizable transposon protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636006|gb|EEX54006.1| mobilizable transposon protein [Prevotella sp. oral taxon 472 str. F0295] Length = 57 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 26/34 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + RHSFA ++L+NG +++++ S+LGH RL TQ Sbjct: 17 YCARHSFAVNILNNGANIKTVASLLGHGRLKYTQ 50 >gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L] gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L] Length = 341 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + +AH+LRH+ T L +G +LR +Q +LGH+ TT IY +V + Sbjct: 282 TISAHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVADR 327 >gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 314 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y++ Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSH 279 >gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+ T L++ G DL +I+ I GH +S+T+IY +V + Sbjct: 245 TVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQR 288 >gi|167768465|ref|ZP_02440518.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1] gi|283795670|ref|ZP_06344823.1| putative phage integrase [Clostridium sp. M62/1] gi|167709989|gb|EDS20568.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1] gi|291077342|gb|EFE14706.1| putative phage integrase [Clostridium sp. M62/1] gi|291537565|emb|CBL10677.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] gi|291560440|emb|CBL39240.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 431 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++A++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYASNLLANGAAPKDVQELLGHSDVSTT 405 >gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973] gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973] Length = 406 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERI 387 >gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 429 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397 >gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302] gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302] Length = 406 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSERI 387 >gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 380 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + Sbjct: 324 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 364 >gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 393 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + Sbjct: 337 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 377 >gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29] gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29] Length = 305 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299 >gi|317480920|ref|ZP_07940001.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903005|gb|EFV24878.1| phage integrase [Bacteroides sp. 4_1_36] Length = 308 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT + +Y HP++ QK + Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297 >gi|313675312|ref|YP_004053308.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942010|gb|ADR21200.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 413 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + L+NG + ++ +LGH++L+ TQIY V Sbjct: 346 TFHIARHTFATTVTLTNGVPIETVSKMLGHTKLANTQIYAKV 387 >gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +S G + S+ +LGH+ + TQIY + +K++ Sbjct: 342 TFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKV 387 >gi|332652920|ref|ZP_08418665.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518066|gb|EGJ47669.1| phage integrase [Ruminococcaceae bacterium D16] Length = 400 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+FATH L++G D +++ ILGH+ S T YT+V Sbjct: 324 HDLRHTFATHALASGVDAKTLSGILGHTNASFTLDTYTHV 363 >gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 311 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 28/40 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T + LRHS A++L+ NG D+R++ I+GH +S T YT+ Sbjct: 254 TLYGLRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTH 293 >gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 361 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354 >gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] Length = 330 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+ AT + G D+R+++ +LGH +STTQIYT+++++ + Sbjct: 270 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDNEDL 316 >gi|73541315|ref|YP_295835.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia eutropha JMP134] gi|72118728|gb|AAZ60991.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia eutropha JMP134] Length = 411 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S +AH LRH+ +H+ DLR ++ GH+ +STT IY + E + H Sbjct: 348 SASAHWLRHTAGSHMSDRQVDLRHVRDNFGHASISTTSIYLHTEDDARHEATQERH 403 >gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis] gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. A2012] gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. 'Ames Ancestor'] gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. CNEVA-9066] gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Western North America USA6153] gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Kruger B] gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Australia 94] gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI] gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis] gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus anthracis str. A2012] gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 361 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354 >gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 406 Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + Sbjct: 350 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 390 >gi|325280482|ref|YP_004253024.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312291|gb|ADY32844.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 372 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 314 TFHSYRRTFATLQAATGTDIRTIQSIMAHKSITTTQRYMKV 354 >gi|315608578|ref|ZP_07883562.1| integrase [Prevotella buccae ATCC 33574] gi|315249749|gb|EFU29754.1| integrase [Prevotella buccae ATCC 33574] Length = 400 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF + L+S G SI ++GH+ +++TQ Y ++ K++ E D+ Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKISEKKIAEDMDR 390 >gi|301311429|ref|ZP_07217356.1| integrase [Bacteroides sp. 20_3] gi|300830515|gb|EFK61158.1| integrase [Bacteroides sp. 20_3] Length = 401 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H RHSFA T L NG + ++ ILGH+ L TQ Y + K++M Sbjct: 342 TYHVARHSFAVTICLENGIPIETLSKILGHTNLRVTQAYAKITHKKVM 389 >gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319] gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319] Length = 406 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERI 387 >gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3] gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3] Length = 305 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299 >gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 305 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299 >gi|198277318|ref|ZP_03209849.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135] gi|198269816|gb|EDY94086.1| hypothetical protein BACPLE_03530 [Bacteroides plebeius DSM 17135] Length = 388 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH++AT + LS+G L ++ +LGHSR+STTQIY + Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAS 382 >gi|134044556|ref|YP_001101862.1| phage integrase [Yersinia ruckeri] gi|133904919|gb|ABO40936.1| phage integrase [Yersinia ruckeri] Length = 336 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 282 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 325 >gi|332882420|ref|ZP_08450047.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679638|gb|EGJ52608.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 388 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH++AT + LS+G L ++ +LGHSR+STTQIY + Sbjct: 344 HCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAS 382 >gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 406 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERI 387 >gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 451 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTHP 58 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R M EI + Sbjct: 386 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQEIQQRIQD 445 Query: 59 SITQK 63 + T K Sbjct: 446 TFTLK 450 >gi|168187085|ref|ZP_02621720.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] gi|169294988|gb|EDS77121.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] Length = 274 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 32/51 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH RH + +L+ N D+ ++ + GHS ++TT++YT ++ +M I ++ Sbjct: 223 AHNFRHLYCKNLIKNDIDISTVADLCGHSSINTTRLYTRLSENELMNIINE 273 >gi|332653262|ref|ZP_08419007.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518408|gb|EGJ48011.1| phage integrase [Ruminococcaceae bacterium D16] Length = 410 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 4/51 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS---KRMMEI 52 H LRH+FATH L++G D +++ ILGH++ S T YT+V KR EI Sbjct: 349 HDLRHTFATHALASGVDAKTLSGILGHTQASFTLDTYTHVTGDMQKRASEI 399 >gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 429 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397 >gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 429 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397 >gi|317473774|ref|ZP_07933055.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316910031|gb|EFV31704.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 408 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 344 HCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTEKI 387 >gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 309 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T + LRH FAT L NGG++ +Q ++GHS + T+ Y +N + + + P Sbjct: 239 TPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKINQDSVANEHRRFSP 293 >gi|304382547|ref|ZP_07365042.1| integrase [Prevotella marshii DSM 16973] gi|304336378|gb|EFM02619.1| integrase [Prevotella marshii DSM 16973] Length = 406 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ M+I Q Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQIVQQ 396 >gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 397 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/39 (51%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LR S A+HLL+ G D+ + ILGH L +TQIY V Sbjct: 333 HDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKV 371 >gi|288802102|ref|ZP_06407543.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18] gi|288335537|gb|EFC73971.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18] Length = 129 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +S G + S+ +LGH+ + TQIY + +K++ Sbjct: 64 TFHMTRHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKV 109 >gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM 17393] gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM 17393] Length = 429 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397 >gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] Length = 342 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + Sbjct: 278 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 315 >gi|53715513|ref|YP_101505.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52218378|dbj|BAD50971.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 217 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H HSF + + G D+ IQ+ L H ++TTQIY+ + +++M E+ D+ Sbjct: 158 TFHCTWHSFGSLHVEMGMDMAVIQAYLEHKNITTTQIYSKMAAQQMCEVVDK 209 >gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 362 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735] gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735] Length = 421 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ M+I Q Sbjct: 356 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQIVQQ 411 >gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 412 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S+TQ+Y V ++ E D+ Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDR 399 >gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136] gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14] gi|332877186|ref|ZP_08444935.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136] gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14] gi|332684776|gb|EGJ57624.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 429 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E Sbjct: 349 TFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 397 >gi|118444090|ref|YP_878186.1| integrase/recombinase [Clostridium novyi NT] gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT] Length = 274 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH RH + +L G D+ +I I GH ++TT+IYT + +++I D Sbjct: 223 AHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDIID 272 >gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] Length = 305 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNP 299 >gi|158340183|ref|YP_001521353.1| phage integrase family protein [Acaryochloris marina MBIC11017] gi|158310424|gb|ABW32039.1| phage integrase family protein [Acaryochloris marina MBIC11017] Length = 190 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 26/47 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS HL + G D R IQ LGH + T YT +N +R EI Sbjct: 141 HMLRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPRRFGEI 187 >gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638] gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638] Length = 339 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ ++Q ILGH + T Y +++ + + Sbjct: 281 HVLRHTFAAHFMMSGGNILALQRILGHHDIKMTMRYAHLSPEHL 324 >gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A] gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus HVE10/4] Length = 291 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] Length = 324 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L +Q +LGHS + TQ+Y ++ + + Y++ Sbjct: 236 HVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLDEDVRREYER 285 >gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32] gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32] Length = 326 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+FAT L +G I ++LGH+ L+T+Q Y + Sbjct: 266 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGR 307 >gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319] gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFER 397 >gi|116622414|ref|YP_824570.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116626674|ref|YP_828830.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225576|gb|ABJ84285.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229836|gb|ABJ88545.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 412 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 25/43 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T AH LRHS AT LL GG L I +L H +TT IY V+ Sbjct: 354 TGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVD 396 >gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86] Length = 345 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLET 321 >gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735] gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735] Length = 333 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+ AT LL G L IQ ILGH + TTQ+Y+ V Sbjct: 279 TFHCARHTCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAV 319 >gi|270340183|ref|ZP_06203572.1| integrase [Prevotella bergensis DSM 17361] gi|270332346|gb|EFA43132.1| integrase [Prevotella bergensis DSM 17361] Length = 106 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+F T L G + SI ++GHS +++TQIY + +++ Sbjct: 57 TWHCARHTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQITDQKI 102 >gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus flavefaciens FD-1] Length = 342 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 TAH RHS A H++ G +L I+ LGH +TT+IY ++++ Sbjct: 261 FPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTE 307 >gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] Length = 291 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574] gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574] Length = 420 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 356 HMARHTFGTMSLSAGIPIESIAKMMGHASIASTQIYAQVTDNKISEDMDR 405 >gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 380 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + T HT RHS A LL+ G D+ ++ ILGH + TQ+Y + K+ Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKK 368 >gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12] gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 380 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + Sbjct: 324 TFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKI 364 >gi|168802255|ref|ZP_02827262.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|189375754|gb|EDU94170.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] Length = 138 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + GG++ +Q ILGHS + T Y Sbjct: 82 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYA 118 >gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 328 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM 22836] Length = 410 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+FAT LS G + S+ +LGH+ + TTQIY + ++ Sbjct: 345 HLARHTFATLTLSKGVSIESVSKMLGHTNIRTTQIYARITDSKI 388 >gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679] gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679] Length = 378 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1] gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1] Length = 334 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS A H L+ GD+R + LGH+ + +T+ Y + ++I Sbjct: 254 TPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRADPDEKLQI 302 >gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370] gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370] Length = 324 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N+ +KR Sbjct: 247 TPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKR 293 >gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162] gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317] gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317] gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162] Length = 361 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 298 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 352 >gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2] gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2] Length = 328 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|226950799|ref|YP_002805890.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226840759|gb|ACO83425.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|322807682|emb|CBZ05257.1| tyrosine recombinase xerD [Clostridium botulinum H04402 065] Length = 199 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+IY +K+ ++Y Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189 >gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27] gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27] Length = 328 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] Length = 274 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH RH + +L G D+ +I I GH ++TT+IYT + +++I D Sbjct: 223 AHNFRHLYCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDIID 272 >gi|134044785|ref|YP_001102264.1| integrase/recombinase [Yersinia pestis biovar Orientalis str. IP275] gi|134047110|ref|YP_001102052.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|165938094|ref|ZP_02226654.1| integrase [Yersinia pestis biovar Orientalis str. IP275] gi|229516079|ref|ZP_04405529.1| integrase [Vibrio cholerae RC9] gi|237640345|ref|YP_002891200.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|237810080|ref|YP_002894520.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|237810260|ref|YP_002894699.1| site-specific recombinase, phage integrase family protein [Salmonella enterica] gi|300836964|ref|YP_003754018.1| integrase/recombinase [Klebsiella pneumoniae] gi|300927180|ref|ZP_07142917.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|133905029|gb|ABO41044.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|133905319|gb|ABO42081.1| integrase/recombinase [Yersinia pestis biovar Orientalis str. IP275] gi|165914117|gb|EDR32734.1| integrase [Yersinia pestis biovar Orientalis str. IP275] gi|229346859|gb|EEO11827.1| integrase [Vibrio cholerae RC9] gi|229561564|gb|ACQ77767.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|229561744|gb|ACQ77946.1| site-specific recombinase, phage integrase family protein [Salmonella enterica] gi|229561936|gb|ACQ78137.1| site-specific recombinase, phage integrase family protein [Escherichia coli] gi|299474768|gb|ADJ18592.1| integrase/recombinase [Klebsiella pneumoniae] gi|300416847|gb|EFK00158.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|324008197|gb|EGB77416.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] gi|327536617|gb|AEA95450.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Dublin] Length = 336 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 282 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 325 >gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 339 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + NGG++ ++ ILGH+ + T Y Sbjct: 282 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYA 318 >gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis serovar chinensis CT-43] Length = 332 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 325 >gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 324 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 254 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 303 >gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 338 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++H LRH+FA+H + +GG++ +Q ILGH+ + T Y++ + + E + Sbjct: 280 SSHVLRHTFASHFMMSGGNILVLQRILGHTDIKMTMRYSHFSPNHLSEAVE 330 >gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/38 (52%), Positives = 26/38 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+ AT L +G D+ +IQ +LGH+ STTQIY Sbjct: 278 PHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYA 315 >gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15] gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15] gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] Length = 291 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium 6_1_63FAA] Length = 411 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H LRH+F T L N +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 351 SCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFE 402 >gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] Length = 371 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 308 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 362 >gi|309796487|ref|ZP_07690895.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308119992|gb|EFO57254.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 338 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 284 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 327 >gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + T HT RHS A LL+ G D+ ++ ILGH + TQ+Y + K+ Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKK 368 >gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071] gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071] Length = 378 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13] gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13] Length = 407 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHS+A L G + S+ ILGH+ ++TTQIY V S ++ Sbjct: 342 HVSRHSWAVLALEYGMPIESVSKILGHTNITTTQIYAKVTSTKL 385 >gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] Length = 370 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH++AT L+ G DL +I +L HS + TTQ+Y +V S Sbjct: 313 TFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYVDVVS 355 >gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus] Length = 361 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVD 353 >gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 397 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 31/40 (77%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H+LRH++AT L G ++++Q+++GHS ++TT IYT+V Sbjct: 335 HSLRHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHV 374 >gi|168178970|ref|ZP_02613634.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|182670087|gb|EDT82063.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] Length = 199 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+IY +K+ ++Y Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189 >gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 329 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK--RMMEIYDQTH 57 H LRH+FAT L +G I +LGH+ ++++Q Y +V ++ R+ ++TH Sbjct: 265 HALRHTFATRLAEDGASAAEIAKLLGHASINSSQTYIDVTAREQRLSVRANRTH 318 >gi|120603820|ref|YP_968220.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120564049|gb|ABM29793.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 356 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 + +RH FAT +L+NG DL ++ +LGHS ++TTQ + K M T P + Q+ Sbjct: 286 YDIRHLFATVMLANGSDLAAVSKLLGHSTIATTQAHYYHVLKGEMSRALATRPRLQQQGT 345 Query: 66 K 66 + Sbjct: 346 R 346 >gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 372 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 309 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 363 >gi|307149750|ref|YP_003890793.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986550|gb|ADN18428.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 192 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH LRH+ +L + G D R IQ LGH+ + T YT ++S R ++D Sbjct: 143 AHLLRHACGYYLANKGVDTRIIQDYLGHANIQNTVRYTQLSSARFEGLWD 192 >gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5] gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5] Length = 395 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQ 55 T H RH+FAT + G + + +LGHS L TTQIY + +R ME +D+ Sbjct: 340 TCHVARHTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEKWDK 394 >gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916] gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916] Length = 387 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 H+LRH++AT L G L+++Q +LGH +S T IYT+V K + D+ Sbjct: 331 HSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADIYTHVMPKEKVLAVDK 381 >gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] Length = 526 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH+FAT L NG D++++ ++LGH +TT IYT+V E Sbjct: 323 HDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSE 369 >gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 390 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+F T +L+ G DL + ++GH+ + TT+IY + K+ E Sbjct: 335 HCSRHTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKKEE 380 >gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 286 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + + H LRHSFAT L+ L IQ +LGHS L T +Y + + +++ + Sbjct: 232 NVSCHILRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQD 281 >gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 328 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|148381303|ref|YP_001255844.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153933633|ref|YP_001385681.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|153937845|ref|YP_001389087.1| phage integrase family site specific recombinase [Clostridium botulinum A str. Hall] gi|148290787|emb|CAL84921.1| putative integrase/recombinase [Clostridium botulinum A str. ATCC 3502] gi|152929677|gb|ABS35177.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152933759|gb|ABS39258.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] Length = 199 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+IY +K+ ++Y Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189 >gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 328 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO] gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO] Length = 375 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 312 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 366 >gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 355 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 297 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKV 337 >gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4] gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4] Length = 291 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ Sbjct: 231 HILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHL 269 >gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 337 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + ++T+K Sbjct: 279 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 336 Query: 64 D 64 D Sbjct: 337 D 337 >gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704] gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium 4_1_37FAA] gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704] gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium 4_1_37FAA] Length = 411 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H LRH+F T L N +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 351 SCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFE 402 >gi|38638037|ref|NP_943011.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527375|gb|AAP86125.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 201 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIY 53 H LRH+FATH ++N +Q +LGH+ L TT +Y +R M ++Y Sbjct: 143 AAPHALRHTFATHAVANDIPTDVLQRLLGHASLQTTSLYVRAERRRGIAAMAKLY 197 >gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] Length = 281 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+HL+ G L+++Q +LGHS + Y +++ + E Sbjct: 223 HDLRHTFASHLIMRGAGLKTVQELLGHSDIKMNMRYAHLSPGHLQE 268 >gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 414 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +S TQIY V ++ E D+ Sbjct: 350 HMARHTFGTMSLSAGIPIESIAKMMGHASISGTQIYAQVTDNKISEDMDR 399 >gi|221642176|ref|YP_002533263.1| integrase/recombinase, phage integrase family protein [Bacillus cereus Q1] gi|221243111|gb|ACM15820.1| integrase/recombinase, phage integrase family protein [Bacillus cereus Q1] Length = 361 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354 >gi|170756250|ref|YP_001782987.1| phage integrase family site specific recombinase [Clostridium botulinum B1 str. Okra] gi|169121462|gb|ACA45298.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 199 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+IY +K+ ++Y Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189 >gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269] gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269] Length = 345 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H+ RHS ATHLL G ++ I+ LGHS + TT+ Y ++S++ Sbjct: 264 SPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQ 308 >gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W] gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W] gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W] gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11] Length = 350 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 406 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQTHP 58 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R M E+ + Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQEVQQRIQD 400 Query: 59 SITQK 63 + T K Sbjct: 401 TFTLK 405 >gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18] gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18] Length = 409 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFNR 397 >gi|260559989|ref|ZP_05832167.1| phage integrase [Enterococcus faecium C68] gi|260073824|gb|EEW62148.1| phage integrase [Enterococcus faecium C68] Length = 249 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 186 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 240 >gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933] gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502] gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410] gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408] gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933] gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502] gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410] gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408] Length = 351 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 288 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 342 >gi|332826665|gb|EGJ99491.1| hypothetical protein HMPREF9455_04143 [Dysgonomonas gadei ATCC BAA-286] Length = 406 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH++AT + LS G + ++ +LGHS+++TTQIY + + ++ E Sbjct: 341 TWHCGRHTYATEITLSQGVPIETVSRMLGHSQIATTQIYAKITNDKIDE 389 >gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] Length = 378 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] Length = 402 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51 H LRH+FATH L++G D +++ ILGH+ S T YT+V E Sbjct: 324 HDLRHTFATHALTSGVDAKTLSGILGHTNASFTLDTYTHVTPDMQQE 370 >gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 402 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSFA L+ G + S+ ILGH+ ++TTQIY V + ++ Sbjct: 342 HLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKL 385 >gi|229035345|ref|ZP_04189251.1| Integrase [Bacillus cereus AH1271] gi|228727958|gb|EEL79028.1| Integrase [Bacillus cereus AH1271] Length = 364 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 306 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 357 >gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 324 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + HT RH FA L+ D+ IQ +LGH+ + TT+IY Sbjct: 261 IRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIY 301 >gi|157371111|ref|YP_001479100.1| integrase family protein [Serratia proteamaculans 568] gi|157322875|gb|ABV41972.1| integrase family protein [Serratia proteamaculans 568] Length = 198 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R IQ LGH + T +YT N+ R ++ + Sbjct: 140 HMLRHACGYALADNGADTRVIQDYLGHRNIQHTVLYTAANAGRFKHLWKE 189 >gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM 22836] Length = 336 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS A HLL G + I+ LGH + TT+IY ++ + ++ +++ P Sbjct: 258 TPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFP 312 >gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 409 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT + L+ G L ++ +LGH R++TTQIY + + ++ Sbjct: 341 FNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKI 390 >gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 338 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 278 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 328 >gi|238751815|ref|ZP_04613302.1| Integrase [Yersinia rohdei ATCC 43380] gi|238709944|gb|EEQ02175.1| Integrase [Yersinia rohdei ATCC 43380] Length = 86 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ +Q ILGHS + T Y + + + Sbjct: 18 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL 61 >gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1] gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1] Length = 328 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 362 Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58] Length = 290 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y N ++ KR Sbjct: 240 LRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKKR 281 >gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612] gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612] Length = 432 Score = 42.0 bits (97), Expect = 0.032, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+F ++LLSNG + +Q +LGH+ +STT Sbjct: 374 HQLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 406 >gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11] gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11] gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11] Length = 328 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855] gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855] gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 386 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RH+ AT L+ G ++ ++Q +LGH L+TTQIY V Sbjct: 333 HSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371 >gi|258624140|ref|ZP_05719090.1| Integrase [Vibrio mimicus VM603] gi|258583571|gb|EEW08370.1| Integrase [Vibrio mimicus VM603] Length = 350 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 296 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 339 >gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] Length = 386 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RH+ AT L+ G ++ ++Q +LGH L+TTQIY V Sbjct: 333 HSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371 >gi|15042706|gb|AAK82422.1|AF396083_1 MrfI [Photorhabdus luminescens] Length = 190 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 29/54 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR +I++ Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSKIWE 183 >gi|44004490|ref|NP_982158.1| site-specific tyrosine recombinase XerS [Bacillus cereus ATCC 10987] gi|42741556|gb|AAS45001.1| integrase/recombinase, phage integrase family protein [Bacillus cereus ATCC 10987] Length = 361 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354 >gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] Length = 367 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 312 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 357 >gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 306 Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + A+ RH+FA L NGGD+ ++Q +L HS + T+ Y + + E +Q +P Sbjct: 243 VRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERYLAIWGTALQERANQFNP 300 >gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 333 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 278 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 323 >gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33] gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33] Length = 328 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L +G D+ I+ LGHS T++Y N S K+++E Sbjct: 268 SPHNIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINARSILEKKVLE 318 >gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 386 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RH+ AT L+ G ++ ++Q +LGH L+TTQIY V Sbjct: 333 HSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEV 371 >gi|229016968|ref|ZP_04173889.1| Integrase [Bacillus cereus AH1273] gi|229027048|ref|ZP_04183355.1| Integrase [Bacillus cereus AH1272] gi|229113453|ref|ZP_04242903.1| Integrase [Bacillus cereus Rock1-15] gi|229160670|ref|ZP_04288663.1| Integrase [Bacillus cereus R309803] gi|228622805|gb|EEK79638.1| Integrase [Bacillus cereus R309803] gi|228669971|gb|EEL25364.1| Integrase [Bacillus cereus Rock1-15] gi|228734242|gb|EEL84929.1| Integrase [Bacillus cereus AH1272] gi|228744328|gb|EEL94409.1| Integrase [Bacillus cereus AH1273] Length = 364 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 306 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 357 >gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31] gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31] Length = 268 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+ AT LL+ G D+ +Q LGH ++TT++Y + + +D Sbjct: 177 HLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAETTAATLQRKFD 225 >gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 314 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + GG++ +Q ILGHS + T Y+ Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYS 278 >gi|270294783|ref|ZP_06200984.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274030|gb|EFA19891.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 407 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH FAT LS G + S+ +LGH+ ++TTQ Y + ++++ Sbjct: 342 HCTRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTEKI 385 >gi|228991307|ref|ZP_04151265.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] gi|228768531|gb|EEM17136.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] Length = 96 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + HT RH+ A L NGGDL S+Q ILGH+ ++ T Sbjct: 61 VSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMT 96 >gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3] gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3] gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 406 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERI 387 >gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC 29799] gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC 29799] Length = 503 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG LR IQ LGHS + TT IYT+++ Sbjct: 437 HDLRHSCASLLYANGVSLRDIQEWLGHSDIGTTSNIYTHLD 477 >gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 408 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS AT LLSNG + ++ ILGH+ + TTQIY + Sbjct: 342 TYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARI 383 >gi|291514242|emb|CBK63452.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 400 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF + L+S G SI ++GH+ +++TQ Y + K++ E D+ Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQTYAKIAEKKIAEDMDK 390 >gi|225377527|ref|ZP_03754748.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM 16841] gi|225210604|gb|EEG92958.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM 16841] Length = 258 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 + H+LRH+F T + G +++ IQ LGHS +STT IY +V + E + Sbjct: 199 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAEEF 249 >gi|149907695|ref|ZP_01896442.1| hypothetical protein PE36_07397 [Moritella sp. PE36] gi|149809365|gb|EDM69294.1| hypothetical protein PE36_07397 [Moritella sp. PE36] Length = 401 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HT RHS A++L+SNG D+ S+Q +L H +S+T Y ++ + E Sbjct: 344 HTARHSVASNLISNGVDISSVQKLLNHKDISSTLRYAKLSEGKQRE 389 >gi|332829973|gb|EGK02601.1| hypothetical protein HMPREF9455_00851 [Dysgonomonas gadei ATCC BAA-286] Length = 413 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T +S G + SI ++GH+ +STTQ+Y + +++ + D+ Sbjct: 339 HQSRHSFGTLAISAGLPIESIAKMMGHANISTTQVYAQITEQKISDDMDK 388 >gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206] gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206] Length = 350 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] Length = 350 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801] gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801] Length = 362 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|170761597|ref|YP_001788677.1| phage integrase family site specific recombinase [Clostridium botulinum A3 str. Loch Maree] gi|169408586|gb|ACA56997.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 199 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+IY +K+ ++Y Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIYFQFTTKQQEKMY 189 >gi|332829724|gb|EGK02370.1| hypothetical protein HMPREF9455_01640 [Dysgonomonas gadei ATCC BAA-286] Length = 307 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRHSFAT + + D +++ ILGHS +STT +Y + N ++ + DQ Sbjct: 251 HGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKRKCIDQ 301 >gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 383 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 286 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 334 >gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 334 Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +H LRH+FA+H + GG++ +Q ILGH+ + T Y + S E Q +P +T Sbjct: 278 CSHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHF-SPEHFESALQYNPLVT 334 >gi|332884811|gb|EGK05066.1| hypothetical protein HMPREF9456_02979 [Dysgonomonas mossii DSM 22836] Length = 121 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRHS A HLL G + I+ LGH + TT+IY ++ + ++ +++ P Sbjct: 43 TPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFPD 98 >gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12] gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12] gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12] Length = 408 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS AT LLSNG + ++ ILGH+ + TTQIY + Sbjct: 342 TYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARI 383 >gi|317501286|ref|ZP_07959489.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316897250|gb|EFV19318.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 431 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415 >gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 381 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 302 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 350 >gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733] Length = 378 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 251 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHS A LL G L +Q LGH L TTQIY + +++ E Y Sbjct: 195 HLLRHSVAQILLDRGMPLEQLQKFLGHRDLKTTQIYAESSLEQVGESY 242 >gi|226325984|ref|ZP_03801502.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758] gi|225205526|gb|EEG87880.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758] Length = 214 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+F ++LLSNG + +Q +LGH+ +STT Sbjct: 156 HMLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 188 >gi|149908526|ref|ZP_01897188.1| DNA integration/recombination/invertion protein [Moritella sp. PE36] gi|149808360|gb|EDM68297.1| DNA integration/recombination/invertion protein [Moritella sp. PE36] Length = 236 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H++ NGG +Q ILGH+ + T Y+ Sbjct: 180 HVLRHTFASHVMINGGIFLVLQRILGHASIVDTMKYS 216 >gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 286 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRHSFA++L+ L ++Q +LGHS L T Y + + +++ E Sbjct: 234 SAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQLEE 281 >gi|54295982|ref|YP_122294.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris] gi|53755814|emb|CAH17317.1| hypothetical protein plpp0140 [Legionella pneumophila str. Paris] Length = 194 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + ++H+ R +F T L+ G D++++ + GH+ + TT IY N R+ I Sbjct: 137 IGASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDNPDRLKRI 188 >gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605] gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605] Length = 397 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLET 373 >gi|304384354|ref|ZP_07366765.1| integrase [Prevotella marshii DSM 16973] gi|304334670|gb|EFM00952.1| integrase [Prevotella marshii DSM 16973] Length = 448 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + S+ S+LGH +++TQIY + ++++ Sbjct: 378 VTWHVARHTMATVVCLSNGMPIESVSSLLGHKCITSTQIYAKITNEKL 425 >gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58] Length = 334 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N Sbjct: 257 TPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 298 >gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75] gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75] Length = 350 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|218848058|ref|YP_002454802.1| integrase/recombinase, phage integrase family protein [Bacillus cereus G9842] gi|218546189|gb|ACK98582.1| integrase/recombinase, phage integrase family protein [Bacillus cereus G9842] Length = 361 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 354 >gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica] gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky] Length = 405 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RH+FA L+ G D+ S+ +LGHS L TT+IY ++ R Sbjct: 326 TFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESR 370 >gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703] Length = 332 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + GG++ +Q ILGHS + T Y+ Sbjct: 260 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYS 296 >gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 374 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 H LRHSFA+ L + G DL++I LGHS + TT +IYT Sbjct: 314 HDLRHSFASVLYNQGTDLKAISEALGHSDIGTTNKIYT 351 >gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 409 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V ++ E +D Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFD 396 >gi|253570201|ref|ZP_04847610.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6] gi|251840582|gb|EES68664.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6] Length = 110 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT + LS+G + ++ +LGH+ + TTQIY + ++M+ Sbjct: 39 HGLRHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 85 >gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] Length = 302 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 LRHSFA H+++ G ++ S+ ILG++ LS+ Q Y + + M + + HP Sbjct: 250 LRHSFAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQNMRKEMNLRHP 300 >gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 506 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IYT+++ Sbjct: 439 HDLRHSCASLLYANGVSLKQIQEWLGHSDISTTANIYTHLD 479 >gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 431 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ Sbjct: 350 HMARHTFGTMCLSAGIPIESIAKMMGHTSISSTQIYAQVTDNKI 393 >gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 421 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390 >gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 368 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358 >gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606] gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606] Length = 346 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 292 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 341 >gi|309777226|ref|ZP_07672189.1| site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] gi|308915096|gb|EFP60873.1| site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] Length = 350 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 H LRH+FAT L G D++ + +LGHS + T +YT+V ++ M Sbjct: 287 HNLRHTFATRCLECGIDMKIVSKVLGHSTIQITADLYTHVTNRAM 331 >gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 412 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+H RH+FAT + L NG + S+ +LGH+ + TTQIY + Sbjct: 347 TSHVARHTFATTITLQNGVPIESVSKMLGHTNIRTTQIYAKI 388 >gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 308 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + + Sbjct: 239 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPEHL 282 >gi|115379499|ref|ZP_01466594.1| site-specific recombinase, phage integrase family [Stigmatella aurantiaca DW4/3-1] gi|310822637|ref|YP_003954995.1| phage integrase [Stigmatella aurantiaca DW4/3-1] gi|115363508|gb|EAU62648.1| site-specific recombinase, phage integrase family [Stigmatella aurantiaca DW4/3-1] gi|309395709|gb|ADO73168.1| phage integrase [Stigmatella aurantiaca DW4/3-1] Length = 87 Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 28/40 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHSFA+HL+ G L+++Q +LGH+ + T Y +++ Sbjct: 22 HDLRHSFASHLVMRGVALKAVQELLGHATIDMTMRYAHLS 61 >gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 421 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390 >gi|210614273|ref|ZP_03290144.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787] gi|210150757|gb|EEA81766.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787] Length = 431 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT +Y + K Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRK 415 >gi|186683565|ref|YP_001866761.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186466017|gb|ACC81818.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 193 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ +L++ G R IQ LGH + T+ YT VNSKR Sbjct: 140 HQLRHACGYYLVNEGHSTRFIQEFLGHRDIRHTEKYTKVNSKRF 183 >gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 354 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A++LL G DLR++ ILGHS + Q YT++ Sbjct: 299 HDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQRYTHL 337 >gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390 >gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185] gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483] gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492] gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185] gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483] gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492] Length = 354 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + ++T+K Sbjct: 296 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 353 Query: 64 D 64 D Sbjct: 354 D 354 >gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 405 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RH+FA L+ G D+ S+ +LGHS L TT+IY ++ R Sbjct: 326 TFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESR 370 >gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 279 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+LRH +AT + DL + +LGHS + TTQIY + R+ Sbjct: 225 HSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRL 268 >gi|228989062|ref|ZP_04149089.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770690|gb|EEM19228.1| Integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 380 Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 373 >gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] Length = 398 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H+ RH+ A LL +G D+ ++ ILGH + TTQIY + + E Sbjct: 341 TFHSARHTHAVLLLEHGADIYTVSKILGHKEIRTTQIYAKIVDTKKKE 388 >gi|303235823|ref|ZP_07322427.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483965|gb|EFL46956.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 245 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 180 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 226 >gi|291526844|emb|CBK92430.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 431 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT +Y + K Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRK 415 >gi|282858446|ref|ZP_06267625.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588762|gb|EFB93888.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 345 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 280 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 326 >gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16] gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16] Length = 372 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 314 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKV 354 >gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361] gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361] Length = 406 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387 >gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 354 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + ++T+K Sbjct: 296 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 353 Query: 64 D 64 D Sbjct: 354 D 354 >gi|228950100|ref|ZP_04112285.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809627|gb|EEM56063.1| Integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 380 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 322 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAIDR 373 >gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14] gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14] Length = 359 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49 + T H RH+ AT LL G DL IQ LGHS + TT IY +++S M Sbjct: 297 IDVTPHIFRHTHATELLRAGWDLAYIQKRLGHSDIQTTANIYAHLSSDDM 346 >gi|91786614|ref|YP_547566.1| phage integrase [Polaromonas sp. JS666] gi|91695839|gb|ABE42668.1| phage integrase [Polaromonas sp. JS666] Length = 414 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ ATHL++ G L+ I LGH S T+ Y V+ + ++ D Sbjct: 356 TGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLVGLRQVAD 407 >gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 372 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 314 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKV 354 >gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 380 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RH+FAT LS G + S+ +LGH+ + TTQIY Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIY 379 >gi|229170556|ref|ZP_04298204.1| Phage integrase [Bacillus cereus AH621] gi|228612905|gb|EEK70082.1| Phage integrase [Bacillus cereus AH621] Length = 336 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 279 TPHTCRHFFANYLMGKGVELKKIRDYLGHESIMTTERYLRERTRR 323 >gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] Length = 379 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH+ AT LL G + + IQ LGHS+LSTT Y++V +K Sbjct: 321 HALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNK 363 >gi|333008862|gb|EGK28322.1| integrase [Shigella flexneri K-272] gi|333020172|gb|EGK39442.1| integrase [Shigella flexneri K-227] Length = 350 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1] Length = 350 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591] gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B] gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482] gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252] gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591] Length = 350 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|300724633|ref|YP_003713958.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila ATCC 19061] gi|297631175|emb|CBJ91868.1| tyrosine recombinase, regulator of fimA [Xenorhabdus nematophila ATCC 19061] Length = 187 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR I++ Sbjct: 130 VSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183 >gi|300723172|ref|YP_003712470.1| integrase/recombinase [Xenorhabdus nematophila ATCC 19061] gi|297629687|emb|CBJ90293.1| Integrase/recombinase [Xenorhabdus nematophila ATCC 19061] Length = 338 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 286 HDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERL 329 >gi|290476600|ref|YP_003469505.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289175938|emb|CBJ82741.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 183 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR I++ Sbjct: 130 VSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183 >gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739] gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739] Length = 350 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 392 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 ++ H LRH+FAT LL + + +Q +LGHS +STT IY++V ++D + Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHV-------LFDTKQKA 378 Query: 60 ITQKD 64 I + D Sbjct: 379 IEEID 383 >gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli MS 115-1] gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli MS 115-1] Length = 376 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 345 >gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18] gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18] Length = 334 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H+LRH+ AT LL G DL +++ LGHS + T+ Y ++N +++ Sbjct: 282 HSLRHTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAHLNPAKLV 326 >gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] Length = 333 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++AT ++ G D+ ++ +L H ++TTQIY + S++ E D+ Sbjct: 278 TFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELVSEKKRETVDK 329 >gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 419 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 354 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 400 >gi|168213143|ref|ZP_02638768.1| site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] gi|170715456|gb|EDT27638.1| site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] Length = 363 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RHSFAT L+ G D ++ ILGH T ++Y++V + MME Sbjct: 309 HDFRHSFATRLIHEGLDFKTTAKILGHDVEQTIRVYSHVTDE-MME 353 >gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149] Length = 332 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMME 51 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N +R +E Sbjct: 256 TPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALE 306 >gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106] gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106] Length = 345 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 29/46 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + + H+LRH+ T L +G +LR +Q +LGH+ TT IY +V + Sbjct: 270 TLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVGDR 315 >gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302] gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302] Length = 406 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERI 387 >gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836] gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836] Length = 318 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+FAT L +G I ++LGH+ L+T+Q Y + Sbjct: 256 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGR 297 >gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 398 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H+LRH+ AT LLS+G +++++Q LGH +L T +YT+V Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHV 379 >gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16] Length = 243 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FA + +GGD+ + +L HS + TT+IY + S + ++ + +P Sbjct: 181 IKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNP 238 >gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 371 Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 313 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKV 353 >gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606] gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERI 387 >gi|282879934|ref|ZP_06288658.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306176|gb|EFA98212.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 406 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 341 TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387 >gi|253569630|ref|ZP_04847039.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840011|gb|EES68093.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 81 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRHS A+++L NG + +I +LGH +TT Y +N Sbjct: 13 PHSLRHSLASNMLENGATMPTISEVLGHRNTATTMTYLKIN 53 >gi|237729521|ref|ZP_04560002.1| gp27 [Citrobacter sp. 30_2] gi|226908127|gb|EEH94045.1| gp27 [Citrobacter sp. 30_2] Length = 123 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + N G++ +Q ILGH+ + T Y + + E Sbjct: 57 HVLRHTFASHFMINCGNILVLQQILGHANIRETMRYAHFAPDHLEE 102 >gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697] gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697] Length = 409 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS ++TTQ+Y V K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIPKKLFEDMDK 397 >gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein [Methanocorpusculum labreanum Z] gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z] Length = 320 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H +RHS+A+ L +LR +Q LGH+ + TT+IY T+++ +R Sbjct: 261 TPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERR 307 >gi|22094596|gb|AAM91928.1|AF525419_1 site-specific recombinase [Xenorhabdus nematophila] Length = 187 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR I++ Sbjct: 130 VSPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183 >gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii DSM 18315] gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii DSM 18315] Length = 392 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+ AT LL NG ++ ++Q +LGH + TT+IY+++ Sbjct: 339 HMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377 >gi|120602532|ref|YP_966932.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562761|gb|ABM28505.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 342 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 26/34 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + +RH +A+ +L+NG DL ++ ILGHS ++TTQ Sbjct: 285 YDIRHLYASVMLANGSDLAAVSKILGHSTIATTQ 318 >gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 404 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 340 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 392 >gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] Length = 298 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + ++ RH+FA HLL+ G L +Q ++GH + +T+IY + K + +Q+ Sbjct: 246 SPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFMNQS 298 >gi|290475364|ref|YP_003468252.1| integrase/recombinase [Xenorhabdus bovienii SS-2004] gi|289174685|emb|CBJ81481.1| Integrase/recombinase [Xenorhabdus bovienii SS-2004] Length = 305 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 253 HDLRRTFASAMLDNGEDIVTVKDAMGHSSITTTQKYDRRGDERL 296 >gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3] gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3] Length = 388 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+F T L G + SI ++GHS +++TQIY V +++ Sbjct: 334 TWHCARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQKI 379 >gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC 43184] gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC 43184] Length = 392 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+ AT LL NG ++ ++Q +LGH + TT+IY+++ Sbjct: 339 HMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377 >gi|217974213|ref|YP_002358964.1| integrase family protein [Shewanella baltica OS223] gi|217499348|gb|ACK47541.1| integrase family protein [Shewanella baltica OS223] Length = 164 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + NGG++ ++ ILGH+ + T Y + + + Sbjct: 109 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYAHFAPEHL 152 >gi|150378362|ref|YP_001314956.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150032909|gb|ABR65023.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 412 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHS AT L+ + + +LGH ++TT +Y V + ++ E+ Sbjct: 356 AHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAEV 403 >gi|332188952|ref|ZP_08390649.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17] gi|332011013|gb|EGI53121.1| hypothetical protein SUS17_4066 [Sphingomonas sp. S17] Length = 94 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 31/64 (48%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+ A HL+S G D+ I+S LGH L TT Y N + + +Q T Sbjct: 17 TPHAFRHATAVHLISAGVDVTVIRSWLGHVSLDTTNHYARANLETKRKALEQVAAPTTPG 76 Query: 64 DKKN 67 K + Sbjct: 77 GKPS 80 >gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390 >gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606] gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387 >gi|295107720|emb|CBL21673.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415 >gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185] Length = 294 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + ++ RH+FA HLL+ G L +Q ++GH + +T+IY + K + +Q+ Sbjct: 242 SPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIYQEILYKIPFDFMNQS 294 >gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 371 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 313 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKV 353 >gi|153814731|ref|ZP_01967399.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756] gi|154502994|ref|ZP_02040054.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149] gi|145847762|gb|EDK24680.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756] gi|153796348|gb|EDN78768.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149] Length = 431 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415 >gi|302527366|ref|ZP_07279708.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302436261|gb|EFL08077.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 335 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+FAT L +G I S+LGH+ L T+Q Y + Sbjct: 258 HALRHTFATRLAEDGATASEIMSLLGHASLVTSQNYIEATGR 299 >gi|253988205|ref|YP_003039561.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638801|emb|CAR67418.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779655|emb|CAQ82816.1| recombinase, type 1 fimbriae regulatory protein [Photorhabdus asymbiotica] Length = 191 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR I++ Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSRIWE 183 >gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC 43183] gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC 43183] Length = 333 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 278 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 323 >gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 350 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|322833261|ref|YP_004213288.1| integrase family protein [Rahnella sp. Y9602] gi|321168462|gb|ADW74161.1| integrase family protein [Rahnella sp. Y9602] Length = 351 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA H + +GG++ +Q ILGHS + T Y + Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAH 318 >gi|317479187|ref|ZP_07938323.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36] gi|316904631|gb|EFV26449.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36] Length = 101 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ AT +L+ G DL ++ +LGH+ + TTQIY + Sbjct: 47 HCLRHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKL 85 >gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 369 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA H + +GG++ ++Q ILGH + T Y +++ Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLS 346 >gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21] gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21] Length = 334 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 29/45 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+ AT L+ G DL +++ LGHS + T+ Y ++N +++ Sbjct: 282 HALRHTTATRLIDGGIDLYTVKEWLGHSTIQVTERYAHLNPDKLV 326 >gi|153813073|ref|ZP_01965741.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174] gi|317501373|ref|ZP_07959575.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|149830875|gb|EDM85965.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174] gi|316897237|gb|EFV19306.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] Length = 431 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K Sbjct: 373 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRK 415 >gi|295084283|emb|CBK65806.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 423 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+ RH FAT LS G + S+ +LGH+ ++TTQ Y + ++++ Sbjct: 358 HSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYAKITTEKI 401 >gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319] gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319] Length = 421 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKI 390 >gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606] gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606] gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)] Length = 314 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295 >gi|228949788|ref|ZP_04111998.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809846|gb|EEM56257.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 362 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH FA N +L IQ LGH+ +TT+IY + KR Sbjct: 305 TAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKR 349 >gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 409 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397 >gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143] gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143] Length = 351 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735] gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735] Length = 406 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 341 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387 >gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 418 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 353 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 399 >gi|229157770|ref|ZP_04285845.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 4342] gi|228625727|gb|EEK82479.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 4342] Length = 323 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LR++FA + + NGGD S+ +LGHS + TQ Sbjct: 262 TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQ 297 >gi|169350994|ref|ZP_02867932.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552] gi|169292056|gb|EDS74189.1| hypothetical protein CLOSPI_01771 [Clostridium spiroforme DSM 1552] Length = 239 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ A+ L+ G L +I SILGHS ++T IY + +S+R+ E Sbjct: 178 HFLRHNTASALVHKGVSLETISSILGHSDPNSTNIYISTDSERLKE 223 >gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC 43183] gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC 43183] Length = 412 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHS+AT LS G + +I LGH ++TTQIY ++ ++ E Sbjct: 348 TYHMARHSYATLCLSMGVPIETISQTLGHRSITTTQIYADITRTKINE 395 >gi|265763426|ref|ZP_06091994.1| transposase [Bacteroides sp. 2_1_16] gi|263256034|gb|EEZ27380.1| transposase [Bacteroides sp. 2_1_16] Length = 308 Score = 41.6 bits (96), Expect = 0.042, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT +++Y HP++ QK + Sbjct: 251 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297 >gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 41.6 bits (96), Expect = 0.042, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 276 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAH 313 >gi|282860181|ref|ZP_06269256.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587070|gb|EFB92300.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 406 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 341 TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 387 >gi|228962663|ref|ZP_04123966.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797022|gb|EEM44329.1| Integrase-recombinase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 391 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 S TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 330 SVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 326 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295 >gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B] Length = 419 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RHSFA ++L G +++++ S++GHS + T+ Y +V Sbjct: 353 TITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHV 395 >gi|75761085|ref|ZP_00741082.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228902689|ref|ZP_04066836.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis IBL 4222] gi|74491427|gb|EAO54646.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856876|gb|EEN01389.1| Integrase/recombinase (XerC/CodV family) [Bacillus thuringiensis IBL 4222] Length = 323 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LR++FA + + NGGD S+ +LGHS + TQ Sbjct: 262 TPHQLRNNFAKYYILNGGDWFSLSRVLGHSSVEVTQ 297 >gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKKLFEDMDR 397 >gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70] gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70] Length = 349 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 371 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + ++T+K Sbjct: 313 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKKI--TLTRK 370 Query: 64 D 64 D Sbjct: 371 D 371 >gi|291541569|emb|CBL14679.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 399 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 TAH+LRH+ AT+LL G +L +Q LGH++ STT IYT Sbjct: 329 TAHSLRHTCATNLLYTGHELHYVQKQLGHAKPSTTLDIYT 368 >gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC 43184] gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC 43184] Length = 310 Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSF T L G + SI ++GHS +++TQIY + +++ Sbjct: 257 TWHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKI 302 >gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83] gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83] gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83] gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83] Length = 409 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397 >gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum NCC2705] gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein [Bifidobacterium longum NCC2705] Length = 276 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+LRH +AT + DL + +LGHS + TTQIY + R+ Sbjct: 222 HSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRL 265 >gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 283 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH F L G + + ++ GHSR++TTQ+Y N + + + E Sbjct: 233 HQLRHYFCKRALEKGFTITEVAALAGHSRITTTQVYINPSLQELKE 278 >gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] Length = 347 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 292 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 337 >gi|296103209|ref|YP_003613355.1| putative bacteriophage integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057668|gb|ADF62406.1| putative bacteriophage integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 349 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657] gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657] Length = 330 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT +++G L +Q I+GH STTQ+Y ++ + + Y + Sbjct: 275 SVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLSEENIKYEYKK 328 >gi|83643306|ref|YP_431741.1| integrase [Hahella chejuensis KCTC 2396] gi|83631349|gb|ABC27316.1| Integrase [Hahella chejuensis KCTC 2396] Length = 336 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + N G++ ++ ILGH LS T Y + K + + Sbjct: 281 HVLRHTFASHYMINDGNILKLKDILGHKTLSMTIRYAKLAPKHLAD 326 >gi|60681334|ref|YP_211478.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC 9343] gi|60492768|emb|CAH07542.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC 9343] Length = 305 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRHSFAT + + D +++ ILGHS +STT +Y + N ++ DQ Sbjct: 249 HGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNMEQKKRCIDQ 299 >gi|332878412|ref|ZP_08446134.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683632|gb|EGJ56507.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 187 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + L+NG + ++ SILGH ++TTQ+Y + +R+ Sbjct: 119 TWHMSRHTMATEVCLTNGVPIETVSSILGHKNITTTQVYAKMTKERL 165 >gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 319 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + LRH FA L NGG S+Q I+GH+ L T+ Y + K + +I+ + P Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQKDLQDIHAKATP 296 >gi|255690096|ref|ZP_05413771.1| integrase [Bacteroides finegoldii DSM 17565] gi|260624375|gb|EEX47246.1| integrase [Bacteroides finegoldii DSM 17565] Length = 308 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFAT + + D +++ ILGHS ++TT +Y + N ++ D+ SI Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVILGHSDITTTLNLYVHPNMEQKKRCIDKVFKSI 307 >gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 392 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+ L G DL I +LGH+++ TT Y ++ + + E ++ Sbjct: 333 HDLRHSFASDALQLGADLTMIGRLLGHTQVQTTARYAHLKTDPIRETANK 382 >gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357] Length = 326 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295 >gi|291527876|emb|CBK93462.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 458 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++ ++LLSNG + +Q +LGHS +STT +Y + K Sbjct: 400 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRK 442 >gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5] gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5] Length = 347 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 292 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 337 >gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591] gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591] Length = 379 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 29/45 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H+ RH+FA L+ G D+ ++ +LGHS L TT+IY ++ R Sbjct: 322 TFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESR 366 >gi|213027994|ref|ZP_03342441.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 189 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 120 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 158 >gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1] gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1] Length = 350 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|169350051|ref|ZP_02866989.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552] gi|169293264|gb|EDS75397.1| hypothetical protein CLOSPI_00791 [Clostridium spiroforme DSM 1552] Length = 312 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 27/33 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH++AT+ + N D++S+ +LGHS++STT Sbjct: 253 HSLRHTYATNCVMNNIDIKSLSEMLGHSKVSTT 285 >gi|111020189|ref|YP_703161.1| transposase B [Rhodococcus jostii RHA1] gi|110819719|gb|ABG95003.1| possible transposase B [Rhodococcus jostii RHA1] Length = 696 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + +AH LRH+ T L G +++I +ILGH + + IY+ ++ + Y+ Sbjct: 524 TVSAHRLRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISDPEIRRQYE 576 >gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073] gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073] Length = 343 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|9626516|ref|NP_040813.1| integrase [Acholeplasma phage L2] gi|1174961|sp|P42540|VINT_BPL2 RecName: Full=Probable integrase/recombinase; AltName: Full=ORF5 gi|289344|gb|AAA87961.1| unknown [Acholeplasma phage L2] Length = 289 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H R +FA+ L+ NG ++ +Q I HSR+ TT Y N KR ++ Y + Sbjct: 233 HRFRKTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEYKK 282 >gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA] gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA] Length = 331 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT L+ G L ++ ++GHS + TT+IY + ++ YD Sbjct: 278 HLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIYAKNGAGKIRYEYD 326 >gi|218848070|ref|YP_002454723.1| integrase-recombinase [Bacillus cereus G9842] gi|218546201|gb|ACK98594.1| integrase-recombinase [Bacillus cereus G9842] Length = 381 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH FA N +L IQ LGH+ +TT+IY + KR Sbjct: 324 TAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKR 368 >gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+F +HL G + IQ + GH+ LSTT Y ++ Sbjct: 321 HILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHL 359 >gi|118602010|ref|YP_908710.1| integrase [Photobacterium damselae subsp. piscicida] gi|118614748|ref|YP_908531.1| integrase [Photobacterium damselae subsp. piscicida] gi|118596839|dbj|BAF38143.1| integrase [Photobacterium damselae subsp. piscicida] gi|118597019|dbj|BAF38322.1| integrase [Photobacterium damselae subsp. piscicida] Length = 307 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GHS ++TTQ Y +R+ Sbjct: 253 HDLRRTFASSMLDNGEDIVTVKDAMGHSSIATTQKYDRRGDERL 296 >gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 408 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55 T H RHS AT LL+NG + ++ ILGH+ + TTQIY TN+ ME+ Q Sbjct: 342 TYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSNDMEMLAQ 397 >gi|304384360|ref|ZP_07366771.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304334676|gb|EFM00958.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 76 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 RH F T LS G + SI ++GH+ +S+TQIY + +++E D+ Sbjct: 3 RHMFGTMSLSAGIPIESIAKMMGHTSISSTQIYAQITDNKILEEMDR 49 >gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 411 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 +AH LRH+F T L +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 351 SAHNLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403 >gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] Length = 304 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RH FA + NG D+ ++ +LGHS +STTQ Y + S E+ + PS Sbjct: 241 SPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY--LQSLEDFELIKKAMPS 294 >gi|269956536|ref|YP_003326325.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305217|gb|ACZ30767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] Length = 362 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 28/40 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT L++ G D++ + +LGH+ ++TT +Y + Sbjct: 287 TPHALRHTTATLLVAQGWDVKVVAELLGHASIATTGVYLD 326 >gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a] Length = 222 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H R+S A LL + D R +Q I G++ ++TT+ T+V ++ +IY+ Sbjct: 167 HIFRYSLAEILLGDNADTRIVQEIFGYASITTTETCTHVEKSKLKKIYN 215 >gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] Length = 304 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RH FA + NG D+ ++ +LGHS +STTQ Y + S E+ + PS Sbjct: 241 SPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRY--LQSLEDFELIKKAMPS 294 >gi|327314474|ref|YP_004329911.1| hypothetical protein HMPREF9137_2261 [Prevotella denticola F0289] gi|326945998|gb|AEA21883.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 64 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 3 RHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 49 >gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 387 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+ A+ LL G L +Q ILGH+ TT+IY ++ + E+ Sbjct: 331 HDLRHTCASRLLRKGVPLSVVQEILGHASSKTTEIYKHLGNSYWEEV 377 >gi|291521083|emb|CBK79376.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 398 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LR + ++L + G DL+++ +LGH+ +STT+ Y ++ + + E+ Sbjct: 342 HALRRTVGSYLYNAGNDLKTVADLLGHTSVSTTKAYVRIDVESLREV 388 >gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50] gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)] gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88] Length = 338 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 275 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 206 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 244 >gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 393 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH+ AT LL G +++ IQ LGHS+L+TT Y++V K Sbjct: 330 HALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 372 >gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli HS] gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli HS] gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520] Length = 343 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|119715826|ref|YP_922791.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536487|gb|ABL81104.1| phage integrase family protein [Nocardioides sp. JS614] Length = 198 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A+ LL+ G DL+++ LGH+++ TTQ Y Sbjct: 138 HDLRHAHASWLLAGGADLKTVMDRLGHAQIQTTQKY 173 >gi|332881987|ref|ZP_08449627.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680067|gb|EGJ53024.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 215 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 155 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 204 >gi|323692935|ref|ZP_08107157.1| integrase [Clostridium symbiosum WAL-14673] gi|323503018|gb|EGB18858.1| integrase [Clostridium symbiosum WAL-14673] Length = 320 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + GD+ + +LGH L TT+IY +S EI ++ Sbjct: 267 HSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINK 316 >gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725] gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725] Length = 294 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + ++ RH+FA HLL+ G L +Q ++GH + +T+IY + Sbjct: 242 SPYSFRHTFAVHLLAKGMGLNFLQELMGHVTIESTKIYQEI 282 >gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 356 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRHSFAT D+ +++ LGH+ + TT IYT++ + M Sbjct: 300 ALTVHALRHSFATRYHQENNDVPRLKNQLGHASIQTTMIYTHLTDEEM 347 >gi|185178831|ref|ZP_02554882.2| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024209|ref|ZP_02570121.2| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518498|ref|ZP_02556703.2| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524047|ref|ZP_02557248.2| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867766|ref|ZP_03079767.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273566|ref|ZP_03206102.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554447|ref|YP_002284620.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550758|ref|ZP_03771707.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551043|ref|ZP_03771989.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209466|gb|EDU06509.1| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018863|gb|EDU56903.1| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997882|gb|EDU66979.1| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659777|gb|EDX53157.1| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660621|gb|EDX53877.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250086|gb|EDY74866.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541948|gb|ACI60177.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225378858|gb|EEH01223.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379912|gb|EEH02274.1| tyrosine recombinase XerC [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 250 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+LR SFAT +L G + +++ +GH+ + TT Y N+N + IY++ Sbjct: 191 TPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLNLNEQTNRRIYNK 242 >gi|16519924|ref|NP_444044.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497423|sp|P55639|Y4RF_RHISN RecName: Full=Putative integrase/recombinase y4rF gi|2182603|gb|AAB92472.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 425 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHS AT L+ + + +LGH ++TT +Y V + ++ E+ Sbjct: 369 AHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQLAEV 416 >gi|299142623|ref|ZP_07035753.1| integrase [Prevotella oris C735] gi|298575838|gb|EFI47714.1| integrase [Prevotella oris C735] Length = 415 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 359 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 405 >gi|161789153|ref|YP_001595727.1| phage integrase family protein [Vibrio sp. 0908] gi|161761439|gb|ABX77084.1| phage integrase family protein [Vibrio sp. 0908] Length = 213 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S H+LR +F H NG D+ +Q + HS ++ T Y + +R+ ++Y Sbjct: 155 SLNTHSLRKTFGYHAYKNGADINVLQKLFNHSSVTETFKYIGITDERVRDVY 206 >gi|303236281|ref|ZP_07322874.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483493|gb|EFL46495.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 171 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 106 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 152 >gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] Length = 288 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 218 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 256 >gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 447 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 382 TFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 428 >gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii DSM 18315] gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii DSM 18315] Length = 333 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H ++TTQIY + VNSK+ Sbjct: 278 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 323 >gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC 43183] gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4] gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6] gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16] gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23] gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36] gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC 43183] gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4] gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6] gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16] gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23] gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R] gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397 >gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574] gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574] Length = 447 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 382 TFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSERI 428 >gi|291530639|emb|CBK96224.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 310 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFAT + + D +++ ILGHS +STT +Y + N ++ D+ SI + Sbjct: 252 HGLRHSFATRCIESKCDYKTVSVILGHSNISTTLNLYVHPNYEQKKRCIDKMFRSIKK 309 >gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 383 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT LL G +LR++ +LGHS + T Sbjct: 322 HDLRHAFATFLLDQGEELRTVMELLGHSTIRMT 354 >gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F +HL G R IQ + GHS L TT+ Y +++ Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349 >gi|225420365|ref|ZP_03762668.1| hypothetical protein CLOSTASPAR_06710 [Clostridium asparagiforme DSM 15981] gi|225040984|gb|EEG51230.1| hypothetical protein CLOSTASPAR_06710 [Clostridium asparagiforme DSM 15981] Length = 60 Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H+ RH FA + + + GD+ + +LGH L TT+IY +S I +Q Sbjct: 4 CTLHSFRHRFAKNFIEHSGDISLLSDLLGHESLETTRIYLRRSSTEQARIVNQV 57 >gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 331 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 27/55 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS A LL G D I LGH + TTQIY + N + D+ P Sbjct: 256 TPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDANLQIKQAALDKVQP 310 >gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269] gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269] Length = 389 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSF T L G + SI ++GHS +++TQIY + +++ Sbjct: 334 TWHVGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQKI 379 >gi|188585021|ref|YP_001916566.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349708|gb|ACB83978.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 194 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H ++HS A HL G D++ +Q LGH +++T +Y +++ E+Y + Sbjct: 137 HVMKHSIAVHLAETGLDVKELQHYLGHRNIASTLVYFQFTTRQQDEMYQK 186 >gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110] gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110] Length = 362 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03] gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07] gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22] gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26] gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32] gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12] Length = 291 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRH+FA+H L G + +Q+ LGHS L+TT Y++ + Sbjct: 240 SAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281 >gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492] gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492] Length = 409 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397 >gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397 >gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 237 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H+LRH+ A HLL G D+ +I LGHS L+ T Y + + +Q P + K Sbjct: 160 HSLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVMSSAK 219 >gi|323485599|ref|ZP_08090940.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163] gi|323401069|gb|EGA93426.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163] Length = 317 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 3/47 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ---IYTNVNSKRM 49 H LRHSFA+ + NG D +S+ ILGHS + T +++N++ K++ Sbjct: 263 HALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKV 309 >gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 385 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 32/44 (72%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 T H LRH+F T +S+G +++++Q ++GHS + T +YT++++ Sbjct: 329 TPHVLRHTFCTRKVSSGMNIKAVQYLMGHSSVQITLDVYTSIDA 372 >gi|238756569|ref|ZP_04617868.1| Integrase [Yersinia ruckeri ATCC 29473] gi|238705195|gb|EEP97613.1| Integrase [Yersinia ruckeri ATCC 29473] Length = 156 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA+H + GG++ +Q ILGHS + T Y+ Sbjct: 98 HVLRHRFASHFMMGGGNILVLQQILGHSSIVMTMRYS 134 >gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC 29176] gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC 29176] Length = 377 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH+FAT + G D++ + +LGHS +STT Sbjct: 316 HTLRHTFATRCIEFGCDIKILSEMLGHSNISTT 348 >gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] Length = 333 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 278 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 323 >gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3] gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3] Length = 578 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYD 54 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + + KR ++ D Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDEMKRARQLAD 572 >gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68] Length = 347 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|301162158|emb|CBW21703.1| putative phage integrase/recombinase [Bacteroides fragilis 638R] Length = 308 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT +++Y HP++ QK + Sbjct: 251 HGLRHSFATRCIEVGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297 >gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 409 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H+LRH+F T + G +++ IQ LGHS +STT IY +V Sbjct: 350 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADV 391 >gi|51596210|ref|YP_070401.1| prophage integrase [Yersinia pseudotuberculosis IP 32953] gi|186895231|ref|YP_001872343.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|51589492|emb|CAH21114.1| putative prophage integrase [Yersinia pseudotuberculosis IP 32953] gi|186698257|gb|ACC88886.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 125 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA+H + GG++ +Q ILGHS + T Y Sbjct: 67 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYA 103 >gi|323691674|ref|ZP_08105936.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum WAL-14673] gi|323504308|gb|EGB20108.1| hypothetical protein HMPREF9475_00798 [Clostridium symbiosum WAL-14673] Length = 317 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 3/47 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ---IYTNVNSKRM 49 H LRHSFA+ + NG D +S+ ILGHS + T +++N++ K++ Sbjct: 263 HALRHSFASQWIENGFDSKSLSEILGHSSVKITMDIYVHSNMSQKKV 309 >gi|254497199|ref|ZP_05110010.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353582|gb|EET12306.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 214 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 30/51 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H+ R +F T L+ G D++++ + GH+ + TT IY N +R+ I Sbjct: 158 GASSHSGRRTFITRLIEQGADIKAVSRLAGHANIVTTAIYVEDNPERLKRI 208 >gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] Length = 354 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 296 TFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKV 336 >gi|158340942|ref|YP_001522109.1| hypothetical protein AM1_E0025 [Acaryochloris marina MBIC11017] gi|158311183|gb|ABW32795.1| hypothetical protein AM1_E0025 [Acaryochloris marina MBIC11017] Length = 49 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 25/45 (55%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 LRHS HL + G D R IQ LGH + T YT +N KR EI Sbjct: 2 LRHSCGYHLANQGLDTRLIQDWLGHRNIQHTVTYTMLNPKRFGEI 46 >gi|325270645|ref|ZP_08137243.1| integrase [Prevotella multiformis DSM 16608] gi|324987040|gb|EGC19025.1| integrase [Prevotella multiformis DSM 16608] Length = 447 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 382 TFHMARHTFASIITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERI 428 >gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058] gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058] Length = 409 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E ++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396 >gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 376 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H+LRH+F T + G +++ IQ LGHS +STT IY +V Sbjct: 317 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADV 358 >gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 386 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RH+FAT L+ G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 322 SPHVGRHTFATLALNKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMREKI 378 >gi|302527392|ref|ZP_07279734.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302436287|gb|EFL08103.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 387 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RHS+ATH + G R +Q LGH+ LSTT+ Y Sbjct: 327 HSARHSYATHAIERGVPPRQVQRDLGHAALSTTEGY 362 >gi|253584229|ref|ZP_04861427.1| site-specific recombinase [Fusobacterium varium ATCC 27725] gi|251834801|gb|EES63364.1| site-specific recombinase [Fusobacterium varium ATCC 27725] Length = 333 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L NG D+ I+ LGH+ T++Y N S KR++E Sbjct: 268 SPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRVLE 318 >gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 420 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H RHS+AT ++ D+ ++ +LGH+ + TTQIY V Sbjct: 355 SISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQIYAKV 397 >gi|159038058|ref|YP_001537311.1| integrase family protein [Salinispora arenicola CNS-205] gi|157916893|gb|ABV98320.1| integrase family protein [Salinispora arenicola CNS-205] Length = 330 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS--KRMMEIYDQTH 57 H LRH+FAT L +G I +LGH L+++Q Y V + +R ++TH Sbjct: 268 HALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQRAAVRSNRTH 321 >gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 295 >gi|323485587|ref|ZP_08090931.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323401105|gb|EGA93459.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 320 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + GD+ + +LGH L TT+IY +S EI ++ Sbjct: 267 HSFRHRFAKSFIEKCGDISLLSDLLGHKNLETTRIYLRRSSSEQYEIINK 316 >gi|237720977|ref|ZP_04551458.1| phage integrase [Bacteroides sp. 2_2_4] gi|229449812|gb|EEO55603.1| phage integrase [Bacteroides sp. 2_2_4] Length = 379 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L+NG + ++ +LGH+ + TTQ Y V Sbjct: 322 TVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKV 362 >gi|160885910|ref|ZP_02066913.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483] gi|156108723|gb|EDO10468.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483] Length = 318 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT L+ N D++++ +ILGHS + TT Sbjct: 261 HGLRHTFATTLIENKIDVKTVSTILGHSDVGTT 293 >gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280] gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280] Length = 403 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 371 >gi|291546700|emb|CBL19808.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5] Length = 380 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 HTLRHSFAT + G ++RS+ ILGHS T +++++N KR Sbjct: 316 HTLRHSFATRCVEAGFEIRSLSEILGHSSTRITLECYVHSSMNLKR 361 >gi|228988910|ref|ZP_04148959.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770824|gb|EEM19340.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 278 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH FA N +L IQ LGH+ +TT+IY + KR Sbjct: 221 TAHTFRHGFAIMAAENDVELLRIQQTLGHASANTTKIYLEKHMKR 265 >gi|37524428|ref|NP_927772.1| recombinase, Type 1 fimbriae regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783852|emb|CAE12714.1| Recombinase, Type 1 fimbriae regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 190 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +S H LRH+ L G D R IQ LGH +S T IYT N KR I++ Sbjct: 130 ISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNVKRFSNIWE 183 >gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 291 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 27/40 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 +AH LRH++A+H+ NG +Q LGH+ L+TT Y++ Sbjct: 239 SAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSH 278 >gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253] Length = 343 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] Length = 392 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 330 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 368 >gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15] gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15] Length = 378 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDK 362 >gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1] gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22] gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1] gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22] gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 397 >gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 430 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+FA +L+NG L + +LGH + TTQ Y V +R+ Sbjct: 365 HLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARVRKQRI 408 >gi|157377375|ref|YP_001475975.1| phage integrase [Shewanella sediminis HAW-EB3] gi|157319749|gb|ABV38847.1| phage integrase [Shewanella sediminis HAW-EB3] Length = 309 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ + H LR +F T LL+ DL + + GH+ ++TTQIY + M E DQ Sbjct: 240 ITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIYDKRDESVMREAIDQ 294 >gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 322 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS--KRMMEIYDQTH 57 H LRH+FAT L +G I +LGH L+++Q Y V + +R ++TH Sbjct: 260 HALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQRAAVRANRTH 313 >gi|13357781|ref|NP_078055.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762132|ref|YP_001752304.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920428|ref|ZP_02931743.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508815|ref|ZP_02958269.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701999|ref|ZP_02971618.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|34223085|sp|Q9PQS0|XERC_UREPA RecName: Full=Tyrosine recombinase xerC gi|11356972|pir||A82919 integrase-recombinase protein UU222 [imported] - Ureaplasma urealyticum gi|6899190|gb|AAF30630.1|AE002121_6 integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827709|gb|ACA32971.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902875|gb|EDT49164.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675778|gb|EDT87683.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700776|gb|EDU19058.1| tyrosine recombinase XerC [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 250 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+LR SFAT +L G + +++ +GH+ + TT Y N+N + IY++ Sbjct: 191 TPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLNLNEQTNRRIYNK 242 >gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH FA L+ G ++ +Q +LGH R+ TT Y N+K E+ + Sbjct: 233 PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEMVE 282 >gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 283 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH++ATH L +G L +Q LGHS L TT+ Y Sbjct: 224 HALRHAYATHQLEHGVPLNELQKYLGHSDLRTTERY 259 >gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2] gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2] Length = 388 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+ RH FA G DL +I+ LGHS + TTQIY Sbjct: 327 TPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIY 364 >gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 286 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH FA L+ G ++ +Q +LGH R+ TT Y N+K E+ + Sbjct: 233 PHMLRHFFAQTLIDKGLNIYDVQQLLGHQRIETTLRYKKPNTKLQEEMVE 282 >gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 407 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHS++ TTQIY V +++ Sbjct: 344 HAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388 >gi|260641905|ref|ZP_05413973.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624204|gb|EEX47075.1| integrase [Bacteroides finegoldii DSM 17565] Length = 55 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSF T +LS+G + SI ++GH+ +++TQ+Y Sbjct: 16 VTPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVY 54 >gi|187251397|ref|YP_001875879.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186971557|gb|ACC98542.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 355 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+F + G D SIQ +GHS+L TT IY + ++++ Y Sbjct: 296 TKFHLLRHNFGSFSAEQGIDPFSIQKAMGHSKLETTMIYIHDTEAKVIQEY 346 >gi|160884309|ref|ZP_02065312.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483] gi|156110048|gb|EDO11793.1| hypothetical protein BACOVA_02287 [Bacteroides ovatus ATCC 8483] Length = 160 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH++AT L+ G DL +I +L HS + TTQ+Y +V Sbjct: 105 TFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYADV 145 >gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17] gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17] Length = 409 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSFA+ + L G + +I +LGHS L TTQ Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDK 397 >gi|213608065|ref|ZP_03368891.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 293 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA H + +GG++ ++Q ILGH + T Y Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYA 293 >gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] Length = 295 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 LR+SFA HLL+ G ++ + ILG+S LS+ Q+Y K + + + HP Sbjct: 239 LRNSFAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDKNLRKEIKEKHP 289 >gi|325857601|ref|ZP_08172537.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483107|gb|EGC86089.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 409 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V ++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFER 397 >gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 368 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VNSK+ Sbjct: 313 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKK 358 >gi|256842147|ref|ZP_05547652.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374988|ref|ZP_06984945.1| integrase [Bacteroides sp. 3_1_19] gi|256736463|gb|EEU49792.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267488|gb|EFI09144.1| integrase [Bacteroides sp. 3_1_19] Length = 407 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHS++ TTQIY V +++ Sbjct: 344 HAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388 >gi|212715402|ref|ZP_03323530.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM 16992] gi|212661708|gb|EEB22283.1| hypothetical protein BIFCAT_00297 [Bifidobacterium catenulatum DSM 16992] Length = 276 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH+LRH +AT + DL + +LGH+ + TTQIY + R+ Sbjct: 221 AHSLRHRYATATYAATHDLYLVARLLGHASVETTQIYVAMPDARL 265 >gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] Length = 287 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT + G L +Q ILGH + TQ+YT++ + + + Y T Sbjct: 235 HILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHLVIEDVEKAYKNT 285 >gi|301307882|ref|ZP_07213838.1| integrase [Bacteroides sp. 20_3] gi|300834225|gb|EFK64839.1| integrase [Bacteroides sp. 20_3] Length = 407 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHS++ TTQIY V +++ Sbjct: 344 HAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388 >gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 281 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT +++G L +Q I+GH +TTQIY ++ + + Y + Sbjct: 226 SIYPHLFRHSFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEENIKHEYKK 279 >gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 443 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+FAT L NG + +Q ILGHS ++ T +YT+V Sbjct: 386 TPHALRHTFATRALENGIPPKVVQEILGHSSITMTLDLYTHV 427 >gi|288919364|ref|ZP_06413698.1| integrase family protein [Frankia sp. EUN1f] gi|288349253|gb|EFC83496.1| integrase family protein [Frankia sp. EUN1f] Length = 411 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ A ++ + LR +Q+ILGH L+TTQIY + E++ + + Sbjct: 327 TMHDLRHTCAIRMVRDEALSLRDVQTILGHVHLTTTQIYVEDDDA---EVFRRVRQHLAD 383 Query: 63 KD 64 +D Sbjct: 384 RD 385 >gi|281426314|ref|ZP_06257227.1| putative integrase [Prevotella oris F0302] gi|281399556|gb|EFB30387.1| putative integrase [Prevotella oris F0302] Length = 422 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13] gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13] Length = 310 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH+ + TTQIY Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282 >gi|253682480|ref|ZP_04863277.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] gi|253562192|gb|EES91644.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] Length = 184 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH+ AT LL G +++ IQ LGHS+L+TT Y++V K Sbjct: 121 HALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 163 >gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5] gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5] Length = 392 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RH+F + L G D R++Q ++GH L+TTQ Y + VNS++ Sbjct: 333 TFHGARHTFCSLQLDAGTDSRTVQELVGHKNLATTQRYLDSVNSRK 378 >gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273] gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273] Length = 315 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + +AHT RH+ A + NGG+ +Q +LGH+ L T+ Y N+ S + E Sbjct: 253 VRVSAHTFRHTSAKLFIQNGGNAFHLQQLLGHTSLEITKKYVNLWSTDIAE 303 >gi|255281089|ref|ZP_05345644.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255268537|gb|EET61742.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 291 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH FA D+ + ILGHS + TT+IYT VN K Sbjct: 237 HNLRHLFAVTYYEEEKDIAHLADILGHSSIDTTRIYTLVNGK 278 >gi|167755883|ref|ZP_02428010.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402] gi|237734851|ref|ZP_04565332.1| integrase [Mollicutes bacterium D7] gi|167704822|gb|EDS19401.1| hypothetical protein CLORAM_01400 [Clostridium ramosum DSM 1402] gi|229382179|gb|EEO32270.1| integrase [Coprobacillus sp. D7] Length = 309 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +T HTLRHS+AT+ + N D +S+ +LGHS + TT Sbjct: 250 FNTNFHTLRHSYATNCVMNEVDTKSLSEMLGHSNVGTT 287 >gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19] gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19] Length = 310 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH+ + TTQIY Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282 >gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI] gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI] Length = 314 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 + LRH+FA L NGG ++Q ILGH+ L+ T+ Y + + + E + P T + Sbjct: 246 YDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRYIALTQQDLREQHTVASPLNTLAPQ 305 Query: 66 KN 67 K+ Sbjct: 306 KH 307 >gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 388 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 +A T RH+FAT L DL S+Q +LGHS + T IY +V SKR Sbjct: 331 SAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKR 377 >gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 375 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+F ++L+ +GG ++ + ++GH +S T Y+++ + RM+ + Q Sbjct: 314 HDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNGRMLALQKQ 363 >gi|291009850|ref|ZP_06567823.1| phage-related integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 122 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+LR S+AT+L+ +G D +Q LGH STT +YT V+S Sbjct: 57 HSLRRSYATYLIEDGYDPLFVQFQLGHEHASTTSLYTCVSS 97 >gi|300775106|ref|ZP_07084968.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300505846|gb|EFK36982.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 308 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGHS +STT + +Y HP++ QK K Sbjct: 252 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKK 298 >gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492] gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36] gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492] gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36] Length = 388 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 +A T RH+FAT L DL S+Q +LGHS + T IY +V SKR Sbjct: 331 SAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKR 377 >gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 324 Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 264 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 313 >gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B] Length = 358 Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|332877744|ref|ZP_08445485.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684324|gb|EGJ57180.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 411 Score = 41.2 bits (95), Expect = 0.054, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400 >gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 381 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 S T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ ++ +I D+ Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDE 374 >gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735] gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735] Length = 444 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E Sbjct: 354 HMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISE 399 >gi|302346775|ref|YP_003815073.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150547|gb|ADK96808.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 422 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|237710668|ref|ZP_04541149.1| phage integrase [Bacteroides sp. 9_1_42FAA] gi|229455390|gb|EEO61111.1| phage integrase [Bacteroides sp. 9_1_42FAA] Length = 379 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L+NG + ++ +LGH+ + TTQ Y V Sbjct: 322 TVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKV 362 >gi|228470899|ref|ZP_04055744.1| integrase [Porphyromonas uenonis 60-3] gi|228307296|gb|EEK16310.1| integrase [Porphyromonas uenonis 60-3] Length = 160 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H R++F T L G + SI ++GHS +++TQIY V +++ D+ Sbjct: 90 TWHCARYTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQVTDQKIARDMDR 141 >gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 S T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ ++ +I D+ Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDE 374 >gi|325508725|gb|ADZ20361.1| Integrase XerD family protein [Clostridium acetobutylicum EA 2018] Length = 145 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT LL G DL+ IQ LGH ++TT IY++VN Sbjct: 88 HDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVN 128 >gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 360 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSFAT + L N DL Q LGH+ TTQIY ++ K M E D+ Sbjct: 306 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 356 >gi|315644195|ref|ZP_07897365.1| phage integrase family protein [Paenibacillus vortex V453] gi|315280570|gb|EFU43859.1| phage integrase family protein [Paenibacillus vortex V453] Length = 312 Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+FA ++ G+++ Q +L H S+T+IYT + + E+ Sbjct: 256 TCHQLRHTFAKRIIDETGNIKKAQELLRHKHTSSTEIYTRHRKEELNEV 304 >gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM 22836] Length = 480 Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+ G + S+ +LGH+ + TTQIY + Sbjct: 344 HLARHTFATLTLTKGVSIESVSKMLGHTNIKTTQIYARI 382 >gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H ++TTQIY + VNSK+ Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 358 >gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 40.8 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRH+ A +L+ G L+ + ++LGHS L+ T++Y Sbjct: 240 HTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVY 275 >gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9] gi|332282306|ref|ZP_08394719.1| site-specific recombinase [Shigella sp. D9] gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9] Length = 343 Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 342 Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRH+ A HLL G D +I LGH+ L+TT Y + + Q P I Sbjct: 265 HSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 319 >gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 418 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H+LRH+F T + G +++ IQ LGH +STT IYT+V Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDV 392 >gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802] gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802] Length = 373 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T L G LR +Q +LGHS TT +Y +++ + Sbjct: 315 SAHSLRHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDR 358 >gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 335 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q ILGHS + T Y + Sbjct: 277 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAH 314 >gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36] Length = 387 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ AT LL+ G DL ++ ILGH + T++Y + K+ +E Sbjct: 330 TYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIE 377 >gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 334 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H +RH+ ATHLL G D+ I LGH + TT IY N E + P+ Sbjct: 259 SPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIYMESNLAHKEEALGRLQPA 314 >gi|296163766|ref|ZP_06846469.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885987|gb|EFG65902.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 335 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRH+ AT ++ +G L + +L H RL TT IY V+ Sbjct: 278 SAHRLRHTLATQMVRSGVALPEVAQVLRHRRLMTTSIYAKVD 319 >gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 368 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H ++TTQIY + VNSK+ Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 358 >gi|218259428|ref|ZP_03475166.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii DSM 18315] gi|218225121|gb|EEC97771.1| hypothetical protein PRABACTJOHN_00823 [Parabacteroides johnsonii DSM 18315] Length = 408 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS AT LL+NG + ++ ILGH+ + TTQIY + Sbjct: 342 TYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARI 383 >gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] Length = 409 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 338 Score = 40.8 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H LRHS A LL +G D+ I+ LGH+ ++TT Y TN+ KR Sbjct: 259 TPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKR 305 >gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 407 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + LS G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TFHMARHTFATTITLSQGMPIETVSCLLGHTNIKTTQIYAKITNEKI 388 >gi|260592905|ref|ZP_05858363.1| putative integrase [Prevotella veroralis F0319] gi|260535105|gb|EEX17722.1| putative integrase [Prevotella veroralis F0319] Length = 417 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 272 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH + +L+ G L +I+ + GH +STT IYT + K++++I +Q Sbjct: 222 HAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTRKSKKQLLDIINQ 271 >gi|218129568|ref|ZP_03458372.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM 20697] gi|217988298|gb|EEC54621.1| hypothetical protein BACEGG_01145 [Bacteroides eggerthii DSM 20697] Length = 121 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E Sbjct: 43 HKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDE 89 >gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F +HL G R IQ + GHS L TT+ Y +++ Sbjct: 310 HTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLS 349 >gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 372 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H LRHS TH G R +Q +GH+ STT IYT+V+++ Sbjct: 304 SLNLHCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNE 349 >gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 +H LRH+FA+H + GG++ +Q ILGH+ + T Y + Sbjct: 279 SHVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAH 317 >gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 404 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 340 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 392 >gi|325856171|ref|ZP_08171996.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483642|gb|EGC86609.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 422 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|291530481|emb|CBK96066.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 431 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKQE 419 >gi|260576807|ref|ZP_05844791.1| integrase family protein [Rhodobacter sp. SW2] gi|259020950|gb|EEW24262.1| integrase family protein [Rhodobacter sp. SW2] Length = 427 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGHS++ TT Y ++ Sbjct: 354 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTLRYAHL 392 >gi|226860297|gb|ACO88851.1| putative integrase/recombinase [Microbacterium sp. MA1] Length = 316 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H+LRHS+ THL+ R IQ +GHS STT IY V+++ Sbjct: 248 SLDLHSLRHSYVTHLVEFDYPERFIQEQVGHSFSSTTAIYVGVSNE 293 >gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG'] Length = 367 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HTLRH+F + L+ G L ++Q + GH STT IY +++ + E Sbjct: 290 HTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHLSPDHLHE 335 >gi|167757809|ref|ZP_02429936.1| hypothetical protein CLOSCI_00140 [Clostridium scindens ATCC 35704] gi|167664691|gb|EDS08821.1| hypothetical protein CLOSCI_00140 [Clostridium scindens ATCC 35704] Length = 113 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 AH LRH+ A+H L +G ++ I +LGH RL TT Y ++ Sbjct: 33 AHQLRHAKASHWLEDGMNVLQISFLLGHERLETTMKYLDI 72 >gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus] Length = 361 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T HTLRH+ AT L+ NG D +Q LGH+++ TT Y +++++ M E Sbjct: 302 TPHTLRHTHATELIRNGWDAAYVQKRLGHAQVQTTLNTYVHLSNQDMKE 350 >gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 384 Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH+F T++ G D++S+Q ++GHS S T +YT+ + + + ++Q Sbjct: 327 TPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379 >gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17] gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17] Length = 409 Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGH+ LS T+ Y V +++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNLSMTERYAKVTPQKLFEEFNR 397 >gi|239623219|ref|ZP_04666250.1| site-specific recombinase [Clostridiales bacterium 1_7_47_FAA] gi|239522185|gb|EEQ62051.1| site-specific recombinase [Clostridiales bacterium 1_7_47FAA] Length = 282 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH FA + L+N D+ + ++GH + TT+IY N ++ E+ D+ Sbjct: 229 HAFRHRFAKNFLANFNDITLLADLMGHESIETTRIYLNKSTDEQREMIDR 278 >gi|110639719|ref|YP_679929.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282400|gb|ABG60586.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 308 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGHS +STT + +Y HP++ QK K Sbjct: 252 HGLRHSFATRCIESKCDYKTVSVLLGHSNISTT-----------LNLY--VHPNLEQKKK 298 >gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608] gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608] Length = 409 Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397 >gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973] gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973] Length = 409 Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397 >gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 417 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+F T LS G + SI ++GH+ +S+TQ+Y V ++ E D ++K+ Sbjct: 350 HIGRHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDMDMLIAKQSEKE 408 >gi|257080356|ref|ZP_05574717.1| integrase/recombinase [Enterococcus faecalis E1Sol] gi|256988386|gb|EEU75688.1| integrase/recombinase [Enterococcus faecalis E1Sol] Length = 395 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH++AT G D+ I + L HS +STT+IY N Sbjct: 335 TPHKLRHTYATLARQGGADMNQISNALTHSGISTTKIYVN 374 >gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] Length = 376 Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H +R +F T L+ +G + + + +LGH+ +STT IYT+V +R +E+ Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351 >gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1] Length = 341 Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H LRHS A HLL G +L I+ LGH+ + TT+IY +S+ Sbjct: 260 SPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSE 303 >gi|323693105|ref|ZP_08107324.1| integrase [Clostridium symbiosum WAL-14673] gi|323502859|gb|EGB18702.1| integrase [Clostridium symbiosum WAL-14673] Length = 432 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+F ++LLSNG + +Q +LGH+ +STT Sbjct: 374 HQLRHTFTSNLLSNGAAPKDVQELLGHADVSTT 406 >gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287] gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287] Length = 411 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400 >gi|294787223|ref|ZP_06752476.1| putative phage integrase family protein [Parascardovia denticolens F0305] gi|315227229|ref|ZP_07869016.1| possible integrase [Parascardovia denticolens DSM 10105] gi|294484579|gb|EFG32214.1| putative phage integrase family protein [Parascardovia denticolens F0305] gi|315119679|gb|EFT82812.1| possible integrase [Parascardovia denticolens DSM 10105] Length = 280 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 26/54 (48%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H +R FAT L GD +Q +LGH L+TTQ Y + + DQ Sbjct: 217 GATPHAIRRRFATDLWHATGDAVKVQGMLGHESLATTQAYIYSTQDDLKQAVDQ 270 >gi|295135380|ref|YP_003586056.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983395|gb|ADF53860.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 232 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+NG + S+ +LGH L TTQ Y + +++ E Sbjct: 142 TTHVARHTFATTITLTNGVPIESVSKMLGHKDLRTTQHYAKIVDRKISE 190 >gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 267 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+ AT LS G + ++ +LGH+++STTQIY V Sbjct: 208 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKV 250 >gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 339 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FA + GD S+Q ILGH+ + Y N+ M ++++ P Sbjct: 272 VRVSPHTLRHTFAKMYILQDGDPYSLQDILGHTSQDMVKKYVNLWRPEMKSKHEKSSP 329 >gi|253569681|ref|ZP_04847090.1| transposase [Bacteroides sp. 1_1_6] gi|251840062|gb|EES68144.1| transposase [Bacteroides sp. 1_1_6] Length = 308 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + G D +++ +LGHS +STT +++Y HP++ QK + Sbjct: 251 HGLRHSFATRCIEVGCDYKTVSVLLGHSNISTT-----------LDLY--VHPNMEQKKR 297 >gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] Length = 303 Score = 40.8 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RH FA + NG D+ ++ +LGH LSTTQ Y + S E+ + PS Sbjct: 241 SPHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRY--LQSLEDFELIKRAMPS 294 >gi|150019809|ref|YP_001312063.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149906274|gb|ABR37107.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 323 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +T R++FAT + NGGD+ ++ +L HS + TT+ Y N+ Sbjct: 250 VNTFRNTFATMFIKNGGDIYRLKLLLNHSTIKTTERYINL 289 >gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7] Length = 310 Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH+ + TTQIY Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282 >gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme DSM 15981] gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme DSM 15981] Length = 284 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + + N GD+ + +LGH + TT+IY Sbjct: 231 HSFRHRFAKNFIENSGDIALLSDLLGHESIETTRIY 266 >gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp. AzwK-3b] gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp. AzwK-3b] Length = 316 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+ L++ G L +Q++LGHS + TQ Y ++ R+ Sbjct: 258 HDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRL 301 >gi|13488150|ref|NP_085857.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028106|dbj|BAB54698.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 338 Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHS A LL +G D+ I+ LGHS ++TT Y + N K Sbjct: 259 TPHVLRHSAAVALLQSGTDVTVIRDYLGHSSIATTNRYISTNLK 302 >gi|331004635|ref|ZP_08328099.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409660|gb|EGG89097.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon 107 str. F0167] Length = 142 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHS+A L NG DL I LGHS L TT IY + +++ + ++ P Sbjct: 60 PHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 113 >gi|310780212|ref|YP_003968544.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309749535|gb|ADO84196.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 235 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HT++H+ H+ G D++ +Q ILGH + T IY + +K+ +Y Sbjct: 183 HTIKHTSGVHMAEEGLDIKEVQYILGHRNVDNTMIYFDFTTKQQESLY 230 >gi|257469860|ref|ZP_05633952.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|317064089|ref|ZP_07928574.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] gi|313689765|gb|EFS26600.1| DNA integration/recombination/inversion protein [Fusobacterium ulcerans ATCC 49185] Length = 333 Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 + H +RH+ AT L NG D+ I+ LGH+ T++Y N S KR++E Sbjct: 268 SPHNVRHAVATELSINGADILEIRDFLGHADTRVTEVYINAKSILEKRVLE 318 >gi|58616296|ref|YP_195425.1| putative site-specific recombinase [Azoarcus sp. EbN1] gi|56315757|emb|CAI10401.1| putative site-specific recombinase [Aromatoleum aromaticum EbN1] Length = 224 Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++H+ R +FA+ LL+ G L ++Q++LGH+ L Y VN + E+++ Sbjct: 171 SSHSGRRTFASRLLAVGESLETVQALLGHADLDHVMPYLEVNEDTLREMFE 221 >gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012] gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 376 Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H +R +F T L+ +G + + + +LGH+ +STT IYT+V +R +E+ Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351 >gi|329917710|ref|ZP_08276491.1| phage integrase [Oxalobacteraceae bacterium IMCC9480] gi|327544518|gb|EGF30038.1| phage integrase [Oxalobacteraceae bacterium IMCC9480] Length = 538 Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + H LRH+ TH ++ G L +Q LGH+ L TT YT +R M Sbjct: 478 STHWLRHTHGTHAVAAGMPLDIVQQNLGHASLDTTTGYTTSEERRRM 524 >gi|212695081|ref|ZP_03303209.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855] gi|212662397|gb|EEB22971.1| hypothetical protein BACDOR_04619 [Bacteroides dorei DSM 17855] Length = 435 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQ+Y V K++ E Sbjct: 353 TFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDE 401 >gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum H04402 065] Length = 330 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFAT+ +++G + IQ ++GH +TTQIY ++ + Sbjct: 278 PHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEE 320 >gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] Length = 352 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LR +FAT L S GD+ +GH ++TT IY V+ K+ E Sbjct: 289 TPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIYAEVSDKQKKE 336 >gi|255527476|ref|ZP_05394346.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187574|ref|ZP_06855969.1| phage integrase [Clostridium carboxidivorans P7] gi|308390320|ref|YP_003933773.1| putative integrase/recombinase [Clostridium carboxidivorans P7] gi|255508819|gb|EET85189.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048096|gb|EFG87535.1| phage integrase [Clostridium carboxidivorans P7] gi|308066827|gb|ADO12131.1| putative integrase/recombinase [Clostridium carboxidivorans P7] Length = 295 Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH+F L NG + I + GH L TT+IYT K +++I D Sbjct: 245 HSFRHAFCKALADNGVSIDIIADLAGHKSLDTTRIYTRHTKKELIKILD 293 >gi|23008047|ref|ZP_00049653.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 84 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT L + G D++ + +LGH+ ++TT +Y + Sbjct: 20 ATPHALRHTTATLLAAEGWDVKVVAELLGHASIATTGVYLD 60 >gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] Length = 346 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHS+A L NG DL I LGHS L TT IY + +++ + ++ P Sbjct: 265 HLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 317 >gi|260910292|ref|ZP_05916967.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260635594|gb|EEX53609.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 419 Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 341 TFHKARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 389 >gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 411 Score = 40.8 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400 >gi|317505706|ref|ZP_07963597.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663175|gb|EFV02951.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 308 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 230 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 278 >gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612] gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612] Length = 320 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ AT + G D+R++Q +LGH +STT+IYT++ + E Sbjct: 256 SVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVRE 304 >gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 376 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H +R +F T L+ +G + + + +LGH+ +STT IYT+V +R +E+ Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351 >gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502] Length = 331 Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ L+ G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 276 SIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEENIKHEYKK 329 >gi|58698750|ref|ZP_00373634.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila ananassae] gi|58534723|gb|EAL58838.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila ananassae] Length = 42 Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 24/30 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 + H +RHSFATHLL++G ++ IQ +LGH+ Sbjct: 13 SPHVIRHSFATHLLNSGANIVLIQKVLGHT 42 >gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4] Length = 407 Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRHS AT L++ G L+ + +LGH + T++Y V+ + ++ Sbjct: 346 HSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAKVDLNSLRDV 392 >gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno] gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno] Length = 411 Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400 >gi|15966853|ref|NP_387206.1| putative integrase/recombinase protein [Sinorhizobium meliloti 1021] gi|15076125|emb|CAC47679.1| Putative integrase/recombinase [Sinorhizobium meliloti 1021] Length = 239 Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RHS A LL +G DL +IQ+ LGH++++TT Y + + M Sbjct: 164 SPHIFRHSLAMKLLQSGVDLLTIQAWLGHAQVATTHRYAAADVEMM 209 >gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] Length = 307 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H+LRHSFAT + + D +++ +LGHS +STT + +Y HP+ QK K Sbjct: 252 HSLRHSFATRCIESKADYKTVSVLLGHSNISTT-----------LNLY--VHPNKEQKKK 298 >gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B] gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 40.8 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH+ + TTQIY Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282 >gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1] gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1] Length = 613 Score = 40.8 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + + H RH+F T ++ L +Q +LGH+ L TT +Y KR Sbjct: 550 VGVSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKR 597 >gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 392 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 ++ H LRH+FAT LL + + +Q +LGHS +STT IY++V Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHV 370 >gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 40.8 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RHS A LL +G DL +IQ+ LGH++++TT Y + + M Sbjct: 216 SPHIFRHSLAMKLLRSGVDLLTIQAWLGHAQVATTHRYAAADVEMM 261 >gi|325270644|ref|ZP_08137242.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM 16608] gi|324987039|gb|EGC19024.1| hypothetical protein HMPREF9141_2452 [Prevotella multiformis DSM 16608] Length = 424 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 392 >gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 376 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H +R +F T L+ +G + + + +LGH+ +STT IYT+V +R +E+ Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351 >gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 321 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSFAT + L N DL Q LGH+ TTQIY ++ K M E D+ Sbjct: 267 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 317 >gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343] gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343] Length = 387 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +A T RH+FAT L D+ ++Q +LGHS L T IY +V Sbjct: 329 VSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHV 370 >gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 387 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +A T RH+FAT L D+ ++Q +LGHS L T IY +V Sbjct: 329 VSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHV 370 >gi|253571743|ref|ZP_04849149.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838951|gb|EES67036.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 435 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH +STTQ+Y V K++ E Sbjct: 353 TFHQARHNFGTHVTLSLGVPIETVSRMMGHMSISTTQLYAQVTDKKVDE 401 >gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH+ + TTQIY Sbjct: 245 TSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIY 282 >gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein [Streptococcus suis GZ1] Length = 432 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H+LRH+F T + G +++ IQ LGH +STT IYT+V Sbjct: 366 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDV 407 >gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium botulinum A str. Hall] gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] Length = 379 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+ AT LL G +++ IQ LGHS++STT Sbjct: 320 HSLRHTHATMLLEAGANIKDIQQRLGHSKISTT 352 >gi|114570890|ref|YP_757570.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341352|gb|ABI66632.1| phage integrase family protein [Maricaulis maris MCS10] Length = 201 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T LRH+F TH + G + ++ +GH+RL TT+IY +V Sbjct: 140 ATPKGLRHTFGTHAMLQGVPITLVKKWMGHARLQTTEIYLDV 181 >gi|15894591|ref|NP_347940.1| integrase XerD family protein [Clostridium acetobutylicum ATCC 824] gi|15024240|gb|AAK79280.1|AE007643_3 Integrase XerD family protein (similarity only with C-term. part [Clostridium acetobutylicum ATCC 824] Length = 164 Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT LL G DL+ IQ LGH ++TT IY++VN Sbjct: 107 HDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVN 147 >gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 297 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYD 54 + HT RH+F ++L++G L +Q ++GH + +T+IY VN ++++ Y+ Sbjct: 244 SPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKILKGYN 295 >gi|301058487|ref|ZP_07199500.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300447409|gb|EFK11161.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 113 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FA+HL+ NG ++ +Q +LGH + T Y++++ + Sbjct: 35 HDTRHTFASHLIMNGATIKDVQELLGHKDIKMTMRYSHLSQE 76 >gi|229104798|ref|ZP_04235459.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28] gi|228678671|gb|EEL32887.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus Rock3-28] Length = 328 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 +S H LR++FA + + NGGD S+ ILGHS + TQ Sbjct: 264 VSIHPHQLRNNFAKYYVLNGGDWASLSRILGHSSVEVTQ 302 >gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M] gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M] Length = 359 Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSF T L G DL IQ+++GH + + Y ++ + E +D Sbjct: 301 HALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIHLAPTFLREEFD 349 >gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + LRH FAT +LS G DL ++ +LGHS +STT Sbjct: 319 YDLRHLFATTMLSKGADLAAVSKLLGHSMISTT 351 >gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC 33656] gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC 33656] Length = 411 Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RH+FA+ N +++ IQ ++GH+ +STT M IY + +P +T+ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398 >gi|218134317|ref|ZP_03463121.1| hypothetical protein BACPEC_02210 [Bacteroides pectinophilus ATCC 43243] gi|217989702|gb|EEC55713.1| hypothetical protein BACPEC_02210 [Bacteroides pectinophilus ATCC 43243] Length = 154 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LLSNG + +Q +LGHS +STT Sbjct: 96 HQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTT 128 >gi|24217183|ref|NP_714666.1| site-specific integrase/recombinase XerD-like protein [Leptospira interrogans serovar Lai str. 56601] gi|45655681|ref|YP_003490.1| phage-related integrase/recombinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24202229|gb|AAN51681.1| XerD-related integrase [Leptospira interrogans serovar Lai str. 56601] gi|45602652|gb|AAS72127.1| phage-related integrase/recombinase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 299 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T TLRHS A HL+++G L ++ LGH L++T+ Y V Sbjct: 231 VTVFTLRHSRALHLIADGSSLNQVKDFLGHKTLASTESYLPV 272 >gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 358 Score = 40.8 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRH A+ L G D+ +IQ +LGHS ++TT Y + R+ + H Sbjct: 293 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGH 346 >gi|332670451|ref|YP_004453459.1| integrase family protein [Cellulomonas fimi ATCC 484] gi|332339489|gb|AEE46072.1| integrase family protein [Cellulomonas fimi ATCC 484] Length = 340 Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 AH RH+FA L+ +G ++QS+LGH L TT IY + Sbjct: 268 AHGFRHTFAKGLIRSGVPAPAVQSLLGHEDLKTTGIYVKATA 309 >gi|317505559|ref|ZP_07963471.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663323|gb|EFV03078.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 308 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 230 TFHMARHTFSTTICLSNGISMETLSKMLGHSNIGTTQIYGKITDHKIQE 278 >gi|307329036|ref|ZP_07608203.1| integrase family protein [Streptomyces violaceusniger Tu 4113] gi|306885231|gb|EFN16250.1| integrase family protein [Streptomyces violaceusniger Tu 4113] Length = 384 Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TT H LRH +A+ L+ NG ++ +Q +LGH++ S T Y Sbjct: 315 TTLHDLRHFYASVLIRNGATVKKVQRLLGHAKPSITLDY 353 >gi|257464308|ref|ZP_05628686.1| phage integrase [Fusobacterium sp. D12] gi|317061816|ref|ZP_07926301.1| predicted protein [Fusobacterium sp. D12] gi|313687492|gb|EFS24327.1| predicted protein [Fusobacterium sp. D12] Length = 60 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 S T +++RHS+ T L ++++Q ++GH+ + TT IYT+V + +EI D Sbjct: 2 SRTFYSVRHSYCTRLFEANVPIKTVQVLMGHADVETTMNIYTHVMKDKKLEIID 55 >gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291] Length = 384 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI---YDQTHPS 59 T H LRH++A+ +G DLR +Q +GHS + T IY+++ S + ++ DQ H + Sbjct: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDQVATNLDQLHAT 369 Query: 60 ITQKDK 65 T K Sbjct: 370 ETHTPK 375 >gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] Length = 361 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ A++L NG LR I ILGH L+ Q Y+++ + + ++ Q+D Sbjct: 303 HDLRHTAASYLAMNGAGLREIAEILGHKTLAMVQRYSHLTQDHTNAVVLRMTKAVFQED 361 >gi|331648027|ref|ZP_08349117.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605] gi|330912163|gb|EGH40673.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86] gi|331042887|gb|EGI15027.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605] Length = 130 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R IQ LGH + T IYT NS R +++ + Sbjct: 59 HMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMWGR 108 >gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 411 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400 >gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287] gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287] Length = 411 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 H RH+F T L+ G L S+ ++GH + TTQIY + ++++ MEI Sbjct: 351 HWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDMEI 400 >gi|322435609|ref|YP_004217821.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163336|gb|ADW69041.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 414 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 25/48 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS AT LL G L+ I LGH + + IY + K + ++ Sbjct: 358 GHALRHSCATELLRRGSSLKDIADFLGHRDMRSVSIYAKYDLKSLRQV 405 >gi|295108684|emb|CBL22637.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus AH603] gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus AH603] Length = 362 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H +R +F T L+ +G + + + +LGH+ +STT IYT+V +R +E+ Sbjct: 290 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 337 >gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565] gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565] Length = 536 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS AT L++ G L+ + +LGH + T+IY V+ + ++ Sbjct: 481 HCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAKVDLNSLRDV 527 >gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787] gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787] Length = 411 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RH+FA+ N +++ IQ ++GH+ +STT M IY + +P +T+ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398 >gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759] gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759] Length = 411 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RH+FA+ N +++ IQ ++GH+ +STT M IY + +P +T+ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398 >gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 368 Score = 40.8 bits (94), Expect = 0.070, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H ++TTQIY + VNSK+ Sbjct: 313 TFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKK 358 >gi|6465906|gb|AAF12706.1|AF066865_4 integrase [Lactococcus phage TPW22] Length = 355 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHSFA++L+ G DL ++ +LGH L+ T Sbjct: 297 HSLRHSFASYLIYKGIDLLTVSKLLGHENLNVT 329 >gi|315608671|ref|ZP_07883651.1| integrase [Prevotella buccae ATCC 33574] gi|315249640|gb|EFU29649.1| integrase [Prevotella buccae ATCC 33574] Length = 409 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGH+ + T+ Y V +++ E +D+ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVCMTERYAKVTPQKLFEEFDR 397 >gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] Length = 372 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ +Q ILGH + T Y ++ + + Sbjct: 309 HVLRHTFAAHFMMSGGNILVLQRILGHHDIKMTMRYAHLAPEHL 352 >gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H +R +F T L+ +G + + + +LGH+ +STT IYT+V +R +E+ Sbjct: 304 HDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEV 351 >gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 283 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH F L G + + ++ GHSR++TTQIY N Sbjct: 233 HQLRHYFCKRALEKGFTITEVAALAGHSRITTTQIYIN 270 >gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] Length = 416 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 + H LRH+F T L N +L+ IQ I+GH +STT +IY Sbjct: 355 SCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYA 394 >gi|154502883|ref|ZP_02039943.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149] gi|153796422|gb|EDN78842.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149] Length = 401 Score = 40.8 bits (94), Expect = 0.071, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+LL G D +++Q + GH TT IY V + E++D + + Q Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQAFIQ 399 >gi|310829293|ref|YP_003961650.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612] gi|308741027|gb|ADO38687.1| hypothetical protein ELI_3731 [Eubacterium limosum KIST612] Length = 304 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRHSF T L G D+R++ LGHS ++ T Sbjct: 247 TFHSLRHSFVTRALELGADMRAVSGFLGHSSIAFT 281 >gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 404 Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFA L+N + +I +LGHS + TT+IY V Sbjct: 346 TTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 386 >gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 405 Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA+ L+ G DL +++ +LGH+ + T Y ++ ++ E Sbjct: 355 HDLRHSFASKLVMRGVDLNTVRELLGHADIKMTLRYAHLAPDKLAE 400 >gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115] gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115] Length = 444 Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49 + H LRHS T+L+S G D S+ ++LGH+++STT IY + +++ Sbjct: 348 SPHALRHSTGTYLISRGHDPVSVAALLGHAQVSTTLNIYAHALPEKL 394 >gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 613 Score = 40.4 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H RH+F T ++ L +Q +LGH+ L TT +Y KR Sbjct: 553 SPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKR 597 >gi|188534989|ref|YP_001908786.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis Et1/99] gi|188030031|emb|CAO97916.1| Type 1 fimbriae regulatory protein, FimB [Erwinia tasmaniensis Et1/99] Length = 186 Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LRH+ L G D R IQ LGH + T +YT+ NS R + ++ Sbjct: 133 SPHMLRHACGFALADRGADTRLIQDYLGHRNIQHTVLYTSSNSARFIGVW 182 >gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 423 Score = 40.4 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RH+FAT + L NG L ++ +LGH +TTQIY V ++ Sbjct: 353 HTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQ 395 >gi|290769909|gb|ADD61679.1| putative protein [uncultured organism] Length = 431 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319] gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E ++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396 >gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 415 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+NG + S+ +LGH + TTQ Y V K++ E Sbjct: 346 TFHLARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVIDKKVGE 394 >gi|150009895|ref|YP_001304638.1| putative integrase [Parabacteroides distasonis ATCC 8503] gi|149938319|gb|ABR45016.1| putative integrase [Parabacteroides distasonis ATCC 8503] Length = 211 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 27/36 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + H RHSFA ++L+NG +++++ S+LGHS L T+ Sbjct: 154 SWHCGRHSFAVNILNNGANIKTVASLLGHSGLKHTE 189 >gi|126667752|ref|ZP_01738720.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126627855|gb|EAZ98484.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 163 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H LRHS A LL +G D+ I+ LGH+ ++TT Y TN+ KR Sbjct: 84 TPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKR 130 >gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 325 Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH+ AT LL NG +++IQ LGH+ +STT IY++V K Sbjct: 267 HDLRHTSATLLLENGVAMKTIQKRLGHASMSTTSDIYSHVTEK 309 >gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 401 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 + H LRH+ AT + G D+ +++ +LGHS +STTQIYT++ Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHL 318 >gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341] gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341] Length = 317 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + GG++ ++ +LGH ++TT Y ++ Sbjct: 261 HVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHL 299 >gi|240147525|ref|ZP_04746126.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200274|gb|EEU98558.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|291551016|emb|CBL27278.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 431 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 575 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 518 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 555 >gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1] gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1] Length = 575 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 518 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 555 >gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 640 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 583 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 620 >gi|154505076|ref|ZP_02041814.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149] gi|153794555|gb|EDN76975.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149] Length = 431 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|126669151|ref|ZP_01740077.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626384|gb|EAZ97055.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 166 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H LRHS A LL +G D+ I+ LGH+ ++TT Y TN+ KR Sbjct: 87 TPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKR 133 >gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 578 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|187928906|ref|YP_001899393.1| integrase family protein [Ralstonia pickettii 12J] gi|187725796|gb|ACD26961.1| integrase family protein [Ralstonia pickettii 12J] Length = 566 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 510 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 547 >gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 575 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 518 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 555 >gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 353 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRH A+ L G D+ +IQ +LGHS ++TT Y + R+ + H Sbjct: 288 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGH 341 >gi|317499110|ref|ZP_07957389.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893630|gb|EFV15833.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 431 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|302385516|ref|YP_003821338.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302196144|gb|ADL03715.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 410 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49 + H LRH+F T L D++ IQ ++GH+ STT IY+++ + M Sbjct: 350 SVHNLRHTFCTRLCEMTNDIKFIQQVMGHADFSTTMDIYSHITQEAM 396 >gi|296169384|ref|ZP_06851007.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895934|gb|EFG75626.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 388 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F ++++ G + + ++GH+ +S++Q+Y + +S R+ D Sbjct: 327 HQLRHAFGSNVVDAGAGIDVVADLMGHAAVSSSQVYLHPDSSRLRAAVD 375 >gi|291551230|emb|CBL27492.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] gi|295098808|emb|CBK87897.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 431 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|295676653|ref|YP_003605177.1| integrase family protein [Burkholderia sp. CCGE1002] gi|295436496|gb|ADG15666.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 414 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH LRH+ +H G DLR+I+ LGH L+TT +Y Sbjct: 344 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 381 >gi|238925836|ref|YP_002939354.1| integrase [Eubacterium rectale ATCC 33656] gi|238877513|gb|ACR77220.1| integrase [Eubacterium rectale ATCC 33656] Length = 431 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|188535884|ref|YP_001905944.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99] gi|188027188|emb|CAO95025.1| Site-specific recombinase [Erwinia tasmaniensis Et1/99] Length = 247 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + L+ IQS++GH + ++YT V Sbjct: 173 IPVTPHTFRHSYIMHMLYHRQPLKVIQSLVGHKDARSIEVYTRV 216 >gi|167766612|ref|ZP_02438665.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1] gi|167711735|gb|EDS22314.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1] gi|291558634|emb|CBL37434.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 431 Score = 40.4 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|299140880|ref|ZP_07034018.1| integrase [Prevotella oris C735] gi|298577846|gb|EFI49714.1| integrase [Prevotella oris C735] Length = 409 Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397 >gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19] gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3] gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19] gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3] Length = 310 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFAT L G + I +LGH + TTQIY Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282 >gi|295680709|ref|YP_003609283.1| integrase family protein [Burkholderia sp. CCGE1002] gi|295440604|gb|ADG19772.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 568 Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYD 54 + H +RH+ ATH L G +L +++ L H+ +STT IY + + KR ++ D Sbjct: 511 SPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQMSD 562 >gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 335 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T+ HT RH+FA + NGGD S+++ILGH+ Y + Sbjct: 270 IRTSPHTWRHTFARMYILNGGDAFSLKTILGHNSWEMVHRYVKI 313 >gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741] gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741] Length = 381 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T+H RH+ AT L ++G D++ +Q+ LGHS++ TT +YT+ + +I D+ Sbjct: 322 TSHGFRHTHATLLFASGMDIKQVQARLGHSKVQTTLDVYTHTMKDKQNKIGDE 374 >gi|166032931|ref|ZP_02235760.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC 27755] gi|166027288|gb|EDR46045.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC 27755] Length = 431 Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|157147899|ref|YP_001455218.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895] gi|157085104|gb|ABV14782.1| hypothetical protein CKO_03706 [Citrobacter koseri ATCC BAA-895] Length = 212 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +T H LRH+ L G D R IQ LGH + T YT N+ R ++++ +P Sbjct: 132 TTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERVNP 188 >gi|29347879|ref|NP_811382.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572466|ref|ZP_04849868.1| integrase [Bacteroides sp. 1_1_6] gi|29339781|gb|AAO77576.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837881|gb|EES65970.1| integrase [Bacteroides sp. 1_1_6] Length = 86 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 28/40 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T +T RHSF T +LS+G + SI ++GH+ +++TQ+Y Sbjct: 47 VTPYTARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYA 86 >gi|13358093|ref|NP_078367.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762050|ref|YP_001752614.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920189|ref|ZP_02931574.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186701629|ref|ZP_02971333.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11356975|pir||C82878 integrase-recombinase protein UU529 [imported] - Ureaplasma urealyticum gi|6899533|gb|AAF30942.1|AE002152_1 integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827627|gb|ACA32889.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902566|gb|EDT48855.1| integrase-recombinase protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|186700862|gb|EDU19144.1| integrase-recombinase protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 251 Score = 40.4 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LR SFA H ++NG ++ + ++GH+ +++T +Y N SK Sbjct: 194 TPHILRRSFANHCINNGINIYDLSLVMGHNNINSTSLYLNKESK 237 >gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 391 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS 46 H LRH+FATH L+ G D +++ ILGH+ S T YT+V + Sbjct: 324 HDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTHVTT 365 >gi|302878726|ref|YP_003847290.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581515|gb|ADL55526.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 204 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + AT + +LR++Q +LGHSRL +T Y + +EI +QT Sbjct: 152 HTMRRTKATLIYRRTKNLRAVQLLLGHSRLESTVRYLGIEVDDALEISEQT 202 >gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1] gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1] Length = 411 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 11/59 (18%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RH+FA+ N +++ IQ ++GH+ +STT M IY + +P +T+ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTT-----------MNIYAEANPDVTK 398 >gi|225026927|ref|ZP_03716119.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353] gi|226322383|ref|ZP_03797901.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758] gi|323487599|ref|ZP_08092889.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum WAL-14163] gi|224955738|gb|EEG36947.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353] gi|225209241|gb|EEG91595.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758] gi|323399098|gb|EGA91506.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum WAL-14163] Length = 431 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31] gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31] gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31] gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31] gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31] gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31] Length = 330 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHS A LL +G D I LGH + TTQIY + + RM E Sbjct: 255 TPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHAD-MRMKE 301 >gi|186686659|ref|YP_001869854.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186469693|gb|ACC85489.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 200 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H +RH+ +L++ G + R IQ LGH + T+ YT +N++R + Sbjct: 148 CHMMRHACGYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARRFL 193 >gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 346 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FAT NG + +Q ++GH+ ++TT+ Y ++ + E + + P Sbjct: 279 TVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSP 335 >gi|325299955|ref|YP_004259872.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319508|gb|ADY37399.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 385 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 30/45 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H+ RH+ AT L+ +G L ++Q +LGH + TTQIY V S+ ++ Sbjct: 333 HSSRHTNATLLIYSGAKLTTVQKLLGHRSIKTTQIYGEVFSQTLV 377 >gi|295108704|emb|CBL22657.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|291523415|emb|CBK81708.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 431 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13] gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13] Length = 310 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFAT L G + I +LGH + TTQIY Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282 >gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5] gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5] Length = 217 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 155 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDR 205 >gi|182418193|ref|ZP_02949493.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237666214|ref|ZP_04526201.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378011|gb|EDT75551.1| putative tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237658304|gb|EEP55857.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 198 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HT++H+ A HL + D++ IQ LGH ++ T+IY SK+ +Y Sbjct: 141 HTIKHTTAVHLADSEMDIKEIQWWLGHKSVNNTEIYFQFTSKQQERMY 188 >gi|160895054|ref|ZP_02075828.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50] gi|156863485|gb|EDO56916.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50] gi|295099078|emb|CBK88167.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 431 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|156936639|ref|YP_001440553.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC BAA-894] gi|156534893|gb|ABU79717.1| hypothetical protein ESA_pESA3p05520 [Cronobacter sakazakii ATCC BAA-894] Length = 325 Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG DL +++ +GH+ ++TTQ Y R+ Sbjct: 273 HDLRRTFASMMLDNGEDLITVRDAMGHASVTTTQKYDRRGDARL 316 >gi|304404690|ref|ZP_07386351.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346497|gb|EFM12330.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 359 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H LRHSFAT + L N D+ Q LGH+ TTQIY ++ + M E D T+ Sbjct: 306 SVHKLRHSFATDYYLRN--DIYKTQEQLGHASPETTQIYAHLTDRTMAEAIDHTN 358 >gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 368 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+ AT LL++G D+ +++ ILGH+ + TT Y V K Sbjct: 312 TFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDK 355 >gi|265763570|ref|ZP_06092138.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|263256178|gb|EEZ27524.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] Length = 352 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +++ Sbjct: 268 AHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQ 311 >gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] Length = 414 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG L+ IQ LGHS STT IY +++ Sbjct: 338 HDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAHLD 378 >gi|85707318|ref|ZP_01038402.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85707509|ref|ZP_01038585.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85667966|gb|EAQ22851.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85668199|gb|EAQ23076.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] Length = 363 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +H LRHS AT +L +G +L + ++L H LSTT Y V+ + EI Sbjct: 306 SHLLRHSAATAMLRHGVNLAGVGAVLRHRSLSTTMQYAKVDFALLREI 353 >gi|186687030|ref|YP_001870419.1| integrase family protein [Nostoc punctiforme PCC 73102] gi|186469654|gb|ACC85451.1| integrase family protein [Nostoc punctiforme PCC 73102] Length = 200 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H +RH+ +L++ G + R IQ LGH + T+ YT +N++R + Sbjct: 148 CHMMRHACGYYLVNQGYNTREIQDFLGHRDIKHTEKYTKLNARRFL 193 >gi|291539286|emb|CBL12397.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 431 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|291535071|emb|CBL08183.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 431 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|257438952|ref|ZP_05614707.1| transposase [Faecalibacterium prausnitzii A2-165] gi|257198630|gb|EEU96914.1| transposase [Faecalibacterium prausnitzii A2-165] Length = 384 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH+F T++ G D++S+Q ++GHS S T +YT+ + + + ++Q Sbjct: 327 TPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379 >gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7] Length = 310 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFAT L G + I +LGH + TTQIY Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282 >gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA] gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4] gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14] gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4] gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA] gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14] gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDR 397 >gi|182413037|ref|YP_001818103.1| integrase family protein [Opitutus terrae PB90-1] gi|182414797|ref|YP_001819863.1| integrase family protein [Opitutus terrae PB90-1] gi|182416164|ref|YP_001821230.1| integrase family protein [Opitutus terrae PB90-1] gi|182416190|ref|YP_001821256.1| integrase family protein [Opitutus terrae PB90-1] gi|177840251|gb|ACB74503.1| integrase family protein [Opitutus terrae PB90-1] gi|177842011|gb|ACB76263.1| integrase family protein [Opitutus terrae PB90-1] gi|177843378|gb|ACB77630.1| integrase family protein [Opitutus terrae PB90-1] gi|177843404|gb|ACB77656.1| integrase family protein [Opitutus terrae PB90-1] Length = 336 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T HT RH+ A HLL + DL I+S LGH+ + TT Y ++ Sbjct: 258 TPHTWRHTTAMHLLQSNVDLAMIRSWLGHASIETTNTYVEID 299 >gi|114762274|ref|ZP_01441732.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114767558|ref|ZP_01446311.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114540387|gb|EAU43474.1| integrase/recombinase [Roseovarius sp. HTCC2601] gi|114544892|gb|EAU47896.1| integrase/recombinase [Roseovarius sp. HTCC2601] Length = 184 Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 25/43 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N Sbjct: 106 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQAN 148 >gi|20804051|emb|CAD31628.1| PUTATIVE INTEGRASE/RECOMBINASE PROTEIN [Mesorhizobium loti R7A] Length = 413 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RHS AT LL +G I +L H + +T+IY ++ +++ E+ Sbjct: 357 AHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDIEKLREL 404 >gi|107022990|ref|YP_621317.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|105893179|gb|ABF76344.1| phage integrase [Burkholderia cenocepacia AU 1054] Length = 578 Score = 40.4 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|319641879|ref|ZP_07996554.1| integrase [Bacteroides sp. 3_1_40A] gi|317386498|gb|EFV67402.1| integrase [Bacteroides sp. 3_1_40A] Length = 382 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT + L NG + + +LGH +STT++Y V+ ++ Sbjct: 302 EATSHTARHTFATTICLENGLPIEIVSKMLGHRFISTTELYAKVSKSKI 350 >gi|317057351|ref|YP_004105818.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315449620|gb|ADU23184.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 465 Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 27/33 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+ RH A+ L+S+G D++++QS+LGHS+ STT Sbjct: 401 HSFRHLNASLLISSGVDVKTVQSVLGHSQASTT 433 >gi|256842148|ref|ZP_05547653.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374987|ref|ZP_06984944.1| integrase [Bacteroides sp. 3_1_19] gi|256736464|gb|EEU49793.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267487|gb|EFI09143.1| integrase [Bacteroides sp. 3_1_19] Length = 433 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH+ +STTQIY V ++ E Sbjct: 351 TFHQARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDE 399 >gi|237726754|ref|ZP_04557235.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|229435280|gb|EEO45357.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] Length = 419 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 9 RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 RHSFAT + L+NG + SI ++GHS + TTQIY + ++++ Sbjct: 333 RHSFATLICLNNGVPIESISKMMGHSSIRTTQIYAEITNQKV 374 >gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] Length = 391 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS 46 H LRH+FATH L+ G D +++ ILGH+ S T YT+V + Sbjct: 324 HDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTHVTT 365 >gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 310 Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFAT L G + I +LGH + TTQIY Sbjct: 245 TSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282 >gi|75675027|ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi Nb-255] gi|74419897|gb|ABA04096.1| Phage integrase [Nitrobacter winogradskyi Nb-255] Length = 400 Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+S G L I +LGH+++ TTQ Y ++ Sbjct: 333 HDLRHTFASLLVSGGMTLPMIGKLLGHTQVQTTQRYAHL 371 >gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 413 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+NG + S+ +LGH+ L TTQ Y + K++ Sbjct: 345 TFHIARHTFATTVTLTNGVSIESVSKMLGHTNLKTTQHYAKILDKKI 391 >gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B] gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFAT L G + I +LGH + TTQIY Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIY 282 >gi|239907848|ref|YP_002954589.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797714|dbj|BAH76703.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 366 Score = 40.4 bits (93), Expect = 0.078, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + LRH FAT +LS G DL ++ +LGHS +STT Sbjct: 311 YDLRHLFATTMLSKGADLAAVSKLLGHSMISTT 343 >gi|239907829|ref|YP_002954570.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797695|dbj|BAH76684.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 366 Score = 40.4 bits (93), Expect = 0.078, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + LRH FAT +LS G DL ++ +LGHS +STT Sbjct: 311 YDLRHLFATTMLSKGADLAAVSKLLGHSMISTT 343 >gi|319654079|ref|ZP_08008171.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2] gi|317394272|gb|EFV75018.1| hypothetical protein HMPREF1013_04791 [Bacillus sp. 2_A_57_CT2] Length = 368 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RH A + + NG D +++Q +LGHS L TT+ Y + KR +E Sbjct: 306 TPHTCRHYTAAYYMDNGIDPKALQDMLGHSSLMTTERY--LRRKRSVE 351 >gi|160944661|ref|ZP_02091888.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii M21/2] gi|158443845|gb|EDP20849.1| hypothetical protein FAEPRAM212_02175 [Faecalibacterium prausnitzii M21/2] Length = 411 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 +AH LRH+F T L +L+ IQS++GH + TT IY ++ E +++ Sbjct: 351 SAHHLRHTFCTRLCEKETNLKVIQSVMGHKDIQTTMDIYAEATEEKKQESFER 403 >gi|313158952|gb|EFR58330.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 389 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT + L+ G L ++ +LGH R++TTQIY + Sbjct: 341 FNPTIHMARHTFATTVTLTQGVPLETVCKMLGHKRITTTQIYAKI 385 >gi|301307883|ref|ZP_07213839.1| integrase [Bacteroides sp. 20_3] gi|300834226|gb|EFK64840.1| integrase [Bacteroides sp. 20_3] Length = 433 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH+ +STTQIY V ++ E Sbjct: 351 TFHQARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDE 399 >gi|291538125|emb|CBL11236.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 431 Score = 40.4 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|290969281|ref|ZP_06560806.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] gi|290780787|gb|EFD93390.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] Length = 411 Score = 40.4 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F + N +++ IQ I+GH+ + TT IY VNS + E Sbjct: 351 SCHHLRHTFCSRFCENETNIKIIQEIMGHASIETTMDIYAEVNSDKKKE 399 >gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4] gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 383 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT +L+ D+ + +LGH +STTQIY + Sbjct: 324 VTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKI 365 >gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101] gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101] Length = 290 Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG + + +Q +LG+ ++ +Y + +N++++ IY + HP Sbjct: 235 NTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHP 288 >gi|332654935|ref|ZP_08420677.1| putative phage integrase [Ruminococcaceae bacterium D16] gi|332516278|gb|EGJ45886.1| putative phage integrase [Ruminococcaceae bacterium D16] Length = 401 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+LL G D +++Q + GH TT IY V + E++D + + Q Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQAFIQ 399 >gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4] gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4] Length = 288 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + T H LRH+F L+ G L + + GH+RL TT +YT Sbjct: 230 VEVTPHKLRHTFCKWLIDAGESLDKVALLAGHARLDTTAVYT 271 >gi|253682391|ref|ZP_04863188.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] gi|253562103|gb|EES91555.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] Length = 236 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H+LRH+ AT +L G +++ IQ LGHS+LSTT Y++V +K Sbjct: 178 HSLRHTHATMMLEAGANIKDIQHRLGHSKLSTTMDTYSHVTNK 220 >gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 352 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFA L+N + +I +LGHS + TT+IY V Sbjct: 294 TTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKV 334 >gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] Length = 413 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F + N +L+ IQSI+GH+ + TT IY V + E Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQE 401 >gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] Length = 338 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T HTLR++FA L +GGD+ ++ +LGHS + T+ Sbjct: 274 TPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309 >gi|291524087|emb|CBK89674.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 431 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|253580756|ref|ZP_04858020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848127|gb|EES76093.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 345 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 287 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 319 >gi|226324083|ref|ZP_03799601.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758] gi|225207632|gb|EEG89986.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758] gi|295109798|emb|CBL23751.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 578 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|160894256|ref|ZP_02075033.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50] gi|197302203|ref|ZP_03167262.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC 29176] gi|156863957|gb|EDO57388.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50] gi|197298634|gb|EDY33175.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC 29176] gi|291526722|emb|CBK92308.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 431 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|160888482|ref|ZP_02069485.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492] gi|298374442|ref|ZP_06984400.1| integrase [Bacteroides sp. 3_1_19] gi|156862159|gb|EDO55590.1| hypothetical protein BACUNI_00899 [Bacteroides uniformis ATCC 8492] gi|298268810|gb|EFI10465.1| integrase [Bacteroides sp. 3_1_19] Length = 403 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI I+GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARIMGHTNIDSTQVYAQVTDRKI 382 >gi|153811811|ref|ZP_01964479.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174] gi|149832214|gb|EDM87299.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174] Length = 431 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 373 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 405 >gi|29346363|ref|NP_809866.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29338258|gb|AAO76060.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 329 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 27/41 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 ++ T + RHSFAT L +G ++ I LGHS L+TTQIY Sbjct: 272 INLTTYVARHSFATVLKKSGVNIALISEALGHSDLATTQIY 312 >gi|116686767|ref|YP_840014.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652482|gb|ABK13121.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 578 Score = 40.4 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6] gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6] Length = 580 Score = 40.4 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 523 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 560 >gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 353 Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 11/60 (18%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+FA+ N +++ IQ ++GH+ +STT M IY + +P +T++ Sbjct: 293 SCHIFRHTFASRFCENETNVKVIQEVMGHADVSTT-----------MNIYAEANPEVTRE 341 >gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004] gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004] Length = 354 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 ++H +RH+FA+H + +GG++ +Q ILGH+ + T Y Sbjct: 275 SSHVMRHTFASHFMMSGGNIIVLQRILGHTDIKMTMRYA 313 >gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] Length = 335 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS A H+L+ + I+ LGH +STT IY +S++ E + P + +++ Sbjct: 258 PHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKKNEAINNLAPKLIEEN 317 >gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 335 Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 24/42 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HTLRH+ HLL G L I+ LGH + TT+IY N Sbjct: 259 SPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARAN 300 >gi|218132239|ref|ZP_03461043.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC 43243] gi|217992848|gb|EEC58848.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC 43243] Length = 384 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 326 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 358 >gi|170735536|ref|YP_001774650.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169821574|gb|ACA96155.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 578 Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD] gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD] Length = 578 Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16] gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16] Length = 566 Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 510 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 547 >gi|255014969|ref|ZP_05287095.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 433 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F TH+ LS G + ++ ++GH+ +STTQIY V ++ E Sbjct: 351 TFHLARHNFGTHITLSLGVPIETVSRMMGHTSISTTQIYAQVTDTKVDE 399 >gi|253578634|ref|ZP_04855905.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849577|gb|EES77536.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 345 Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 287 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 319 >gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC 100599] gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599] Length = 399 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFAT L D +Q+ LGHS++ TT Y +V Sbjct: 346 SVHKLRHSFATQFLRLNPDPHQLQAQLGHSKIETTMQYAHV 386 >gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC 43243] gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC 43243] Length = 413 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F + N +L+ IQSI+GH+ + TT IY V + E Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQE 401 >gi|187928591|ref|YP_001899078.1| integrase family protein [Ralstonia pickettii 12J] gi|241114169|ref|YP_002973644.1| integrase family protein [Ralstonia pickettii 12D] gi|187725481|gb|ACD26646.1| integrase family protein [Ralstonia pickettii 12J] gi|240868742|gb|ACS66400.1| integrase family protein [Ralstonia pickettii 12D] Length = 704 Score = 40.4 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEI 52 + H LRHS A+H ++ G + +Q LGH L TT +Y T+ + RM E+ Sbjct: 648 STHWLRHSHASHAIAAGTPVEIMQQNLGHKSLDTTTVYVTSEEAIRMKEL 697 >gi|332877049|ref|ZP_08444800.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684939|gb|EGJ57785.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 308 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGHS +STT + +Y HP++ QK + Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297 >gi|258514706|ref|YP_003190928.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778411|gb|ACV62305.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 342 Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM-EIYDQTHPSITQKD 64 H LR + AT+L NG +L I ILGH+ L TT++Y S MM E D T+++ Sbjct: 265 HMLRRTRATNLYQNGIELALISRILGHAFLDTTRVYYAKPSLAMMREAMDSVEAPQTREE 324 Query: 65 K 65 K Sbjct: 325 K 325 >gi|154483893|ref|ZP_02026341.1| hypothetical protein EUBVEN_01597 [Eubacterium ventriosum ATCC 27560] gi|149735384|gb|EDM51270.1| hypothetical protein EUBVEN_01597 [Eubacterium ventriosum ATCC 27560] Length = 225 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++A+ L+ NG +++ +QS+LGHS + T Y++V K Sbjct: 165 HCLRHTYASTLVLNGANIKDVQSLLGHSDIKITLNTYSHVTEK 207 >gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110] gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110] Length = 401 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +AH+LRH+ AT L G L +Q +LGH+ TT IY ++ + + Sbjct: 303 SAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMIYAHIGDRWL 348 >gi|327314472|ref|YP_004329909.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944620|gb|AEA20505.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 400 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF + L+S G SI ++GH+ +++TQ Y ++ K++ E D+ Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMDR 390 >gi|304382315|ref|ZP_07364820.1| integrase [Prevotella marshii DSM 16973] gi|304336554|gb|EFM02785.1| integrase [Prevotella marshii DSM 16973] Length = 430 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + S+ +LGH +++TQIY + ++++ Sbjct: 360 VTWHVARHTMATVVCLSNGMPIESVSCLLGHKCITSTQIYAKITNEKL 407 >gi|303235784|ref|ZP_07322391.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484231|gb|EFL47219.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 432 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F+T + LSNG + ++ +LGHS + TTQIY + ++ E Sbjct: 344 TFHMARHTFSTTICLSNGISMETLSKMLGHSDIGTTQIYGKITDLKIRE 392 >gi|89894954|ref|YP_518441.1| hypothetical protein DSY2208 [Desulfitobacterium hafniense Y51] gi|89334402|dbj|BAE83997.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 466 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNV 44 + H LRHS +T LL +G DL+ IQ +LGH +STT YT+V Sbjct: 347 SVHALRHSISTALLESGKVDLKQIQEMLGHKDISTTGNYYTDV 389 >gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 365 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H +RHSFAT LL NG + + + ILGHS + TT +Y++V Sbjct: 309 HDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHV 348 >gi|260424444|ref|YP_003212645.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032] gi|260219252|emb|CBA34606.1| hypothetical protein Ctu_1p00690 [Cronobacter turicensis z3032] Length = 318 Score = 40.4 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG DL +++ +GH+ ++TTQ Y R+ Sbjct: 266 HDLRRTFASMMLDNGEDLITVRDAMGHASVTTTQKYDRRGDARL 309 >gi|15894395|ref|NP_347744.1| XerC/XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|15024028|gb|AAK79084.1|AE007627_8 Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium acetobutylicum ATCC 824] gi|325508523|gb|ADZ20159.1| Integrase/recombinase (xerC/xerD family); CF-10 family [Clostridium acetobutylicum EA 2018] Length = 340 Score = 40.4 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH AT L NG + I+ LGH+ STTQIY +++ M+ Sbjct: 277 HAFRHYAATWLKRNGATIDQIKDFLGHNDTSTTQIYIDIDGAENMK 322 >gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 403 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRHS A+ LL+NG ++ IQ LGHS STT IY++++ +E Sbjct: 345 HDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLDFHAQIE 391 >gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 301 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT RHSF ++++ G + IQ GHS L + Q+Y Sbjct: 244 FDITPHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVY 284 >gi|126668245|ref|ZP_01739205.1| site-specific recombinase, phage integrase family protein [Marinobacter sp. ELB17] gi|126627271|gb|EAZ97908.1| site-specific recombinase, phage integrase family protein [Marinobacter sp. ELB17] Length = 283 Score = 40.4 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH++ATH L G + +Q +LGHS L +TQ Y Sbjct: 224 HALRHAYATHQLERGLPIHELQRLLGHSDLRSTQRY 259 >gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 374 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++AT L+ NG D++++ ++GH+ + TT Sbjct: 312 HALRHTYATRLIENGIDVKTVSMLVGHADIQTT 344 >gi|317501367|ref|ZP_07959569.1| transposase [Lachnospiraceae bacterium 8_1_57FAA] gi|325263258|ref|ZP_08129993.1| transposase [Clostridium sp. D5] gi|328948774|ref|YP_004366111.1| integrase family protein [Treponema succinifaciens DSM 2489] gi|316897231|gb|EFV19300.1| transposase [Lachnospiraceae bacterium 8_1_57FAA] gi|324031651|gb|EGB92931.1| transposase [Clostridium sp. D5] gi|328449098|gb|AEB14814.1| integrase family protein [Treponema succinifaciens DSM 2489] Length = 397 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TT HTLRH+F T+L + G + +++Q I+GHS ++ T Y Sbjct: 341 TTPHTLRHTFCTNLANAGMNPKALQYIMGHSNINMTLNY 379 >gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4] gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4] Length = 420 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LS+G + ++ +LGH+ + TTQIY + ++M+ Sbjct: 347 TFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 395 >gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 397 Score = 40.4 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFA+ +S G ++ I +LGH R++TT+ Y +V + + E ++ SIT Sbjct: 328 HDLRHSFASTAISGGINIEFISKLLGHKRITTTEYYYAHVQNDPLHEAANKIATSITTAR 387 Query: 65 K 65 K Sbjct: 388 K 388 >gi|210630405|ref|ZP_03296440.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279] gi|210160487|gb|EEA91458.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279] Length = 153 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HT R + ATH + G + +Q +LGHS++ TT Y VN Sbjct: 101 HTFRRTLATHAIDKGMPIEQVQKLLGHSKIETTMHYAMVN 140 >gi|34540597|ref|NP_905076.1| integrase [Porphyromonas gingivalis W83] gi|34541124|ref|NP_905603.1| integrase [Porphyromonas gingivalis W83] gi|288926491|ref|ZP_06420410.1| integrase [Prevotella buccae D17] gi|34396910|gb|AAQ65975.1| integrase [Porphyromonas gingivalis W83] gi|34397440|gb|AAQ66502.1| integrase [Porphyromonas gingivalis W83] gi|288336703|gb|EFC75070.1| integrase [Prevotella buccae D17] Length = 400 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF + L+S G SI ++GH+ +++TQ Y ++ K++ E D+ Sbjct: 341 HQARHSFGSFLISEGICTESIAKMMGHASITSTQNYAKISEKKISEDMDR 390 >gi|260885337|ref|ZP_05734818.2| integrase [Prevotella tannerae ATCC 51259] gi|260852874|gb|EEX72743.1| integrase [Prevotella tannerae ATCC 51259] Length = 63 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 RH+FAT LS + S+ +LGH+ + TTQIY + +K++ Sbjct: 3 RHTFATMSLSKSVPMESVSKMLGHTNIKTTQIYARITNKKI 43 >gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 418 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRHS AT+LL + I ILGH+ ++TT IY + + + ++ Sbjct: 361 HSLRHSLATYLLEDNIPFSLIADILGHASMNTTMIYAKASVETLRQV 407 >gi|198276144|ref|ZP_03208675.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135] gi|198270956|gb|EDY95226.1| hypothetical protein BACPLE_02333 [Bacteroides plebeius DSM 17135] Length = 387 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT RH+ AT L+ NG + ++Q +LGH + TTQ Y+++ S Sbjct: 335 HTARHTNATLLIYNGAQITTVQKLLGHQSVKTTQGYSDIFS 375 >gi|307546670|ref|YP_003899149.1| type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM 2581] gi|307218694|emb|CBV43964.1| K07357 type 1 fimbriae regulatory protein FimB [Halomonas elongata DSM 2581] Length = 208 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+ HL+++G DLR +Q LGH+ + T YT + + Sbjct: 160 HALRHACGVHLINSGVDLRIVQQYLGHANIQNTVAYTALTGR 201 >gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 396 Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 11/57 (19%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+ +T L+ G ++++Q +LGHS++STT M+IY P + Q Sbjct: 338 HELRHNVSTALIEAGVSIKTVQEMLGHSKISTT-----------MDIYGHVTPKMKQ 383 >gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2] gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2] Length = 398 Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RHS A ++S GG L +Q+ LGH + ++Q Y +++ +R+ Sbjct: 333 HTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRYAHLHPQRL 376 >gi|121594243|ref|YP_986139.1| phage integrase family protein [Acidovorax sp. JS42] gi|120606323|gb|ABM42063.1| phage integrase family protein [Acidovorax sp. JS42] Length = 566 Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + + KR E+ Sbjct: 508 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDEVKRAREM 557 >gi|265753741|ref|ZP_06089096.1| integrase [Bacteroides sp. 3_1_33FAA] gi|263235455|gb|EEZ20979.1| integrase [Bacteroides sp. 3_1_33FAA] Length = 412 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 8/53 (15%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+ AT L+ G + ++Q +LGH+ + TT+IY+ E++D+T Sbjct: 333 TYHTSRHTCATLLVHQGVPITTVQKLLGHTSVKTTEIYS--------EVFDET 377 >gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 40.4 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA+H + GG++ +Q +LGH+ + T Y + Sbjct: 276 HVLRHTFASHFMMKGGNILVLQRVLGHTDIKMTMRYAH 313 >gi|210612354|ref|ZP_03289279.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787] gi|319937022|ref|ZP_08011432.1| integrase [Coprobacillus sp. 29_1] gi|210151614|gb|EEA82621.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787] gi|319807958|gb|EFW04537.1| integrase [Coprobacillus sp. 29_1] Length = 432 Score = 40.4 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LLSNG + +Q +LGH+ +STT Sbjct: 374 HMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTT 406 >gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51] gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 395 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG ++ IQ LGHS STT IY++++ Sbjct: 325 HDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSHLD 365 >gi|331091918|ref|ZP_08340750.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402817|gb|EGG82384.1| hypothetical protein HMPREF9477_01393 [Lachnospiraceae bacterium 2_1_46FAA] Length = 413 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F + N +L+ IQSI+GH+ + TT IY V + E Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHADIETTMDIYAEVTETKKYE 401 >gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 310 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + LRH+FA L NGG S+Q LGH+ L T+ Y + + EI + P Sbjct: 241 YDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINNSASP 293 >gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 436 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LS+G + ++ +LGH+ + TTQIY + ++M+ Sbjct: 363 TFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 411 >gi|153812497|ref|ZP_01965165.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174] gi|149831422|gb|EDM86510.1| hypothetical protein RUMOBE_02896 [Ruminococcus obeum ATCC 29174] Length = 378 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+FAT + G D++++ ILGHS ++ T Sbjct: 317 TNFHTLRHTFATRCVELGFDVKTLSEILGHSNINIT 352 >gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 360 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ + +G DL +IQ +LGH ++TT Y +V+ + + + + Sbjct: 295 TPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIEDAW 344 >gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 409 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 + H LRH+FAT N +L+ IQ I+GH ++TT +IY Sbjct: 349 SCHNLRHTFATRYCENETNLKVIQEIMGHKDIATTMEIYA 388 >gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49] Length = 318 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 261 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 298 >gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.] Length = 311 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+LRH A+ L G L +IQ+ILGHSR +TT Y Sbjct: 255 HSLRHYGASKLAEAGAPLTAIQAILGHSRATTTDTY 290 >gi|295116277|emb|CBL37124.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 275 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 13/58 (22%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H+LRHSFA+ + NG D +++ ILGHS + T M+IY H S+ QK Sbjct: 220 HSLRHSFASKWIENGFDSKALSEILGHSSVKIT-----------MDIY--VHSSMRQK 264 >gi|268679866|ref|YP_003304297.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] gi|268617897|gb|ACZ12262.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] Length = 390 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 + LRH+FA+ L+SNG D+ + LGH +S T +IYT Sbjct: 325 YNLRHTFASQLISNGADIVYVSKTLGHKDVSITLKIYT 362 >gi|254498949|ref|ZP_05111653.1| Phage integrase [Legionella drancourtii LLAP12] gi|254351853|gb|EET10684.1| Phage integrase [Legionella drancourtii LLAP12] Length = 191 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 M H LRHS L ++G D RSIQ LGH + T YT + + R E ++ Sbjct: 137 MPIHPHMLRHSTGFKLANDGRDTRSIQHYLGHKNIQHTVRYTEIAAIRFKEFWN 190 >gi|226361766|ref|YP_002779544.1| transposase for insertion sequence element [Rhodococcus opacus B4] gi|226240251|dbj|BAH50599.1| putative transposase for insertion sequence element [Rhodococcus opacus B4] Length = 538 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + +AH LRH+ T L G +++I ++LGH + + IY+ ++ + Y+ Sbjct: 366 TVSAHRLRHTLGTQLAEGGARIQTIMAVLGHRSATMSMIYSRISDPEIRRQYE 418 >gi|260641921|ref|ZP_05413997.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624123|gb|EEX46994.1| integrase [Bacteroides finegoldii DSM 17565] Length = 396 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 30/44 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T ++++G + SI ++GH+ +++TQ+Y V +++ Sbjct: 332 HMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKI 375 >gi|218134136|ref|ZP_03462940.1| hypothetical protein BACPEC_02026 [Bacteroides pectinophilus ATCC 43243] gi|217991511|gb|EEC57517.1| hypothetical protein BACPEC_02026 [Bacteroides pectinophilus ATCC 43243] Length = 136 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 78 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 110 >gi|212691988|ref|ZP_03300116.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855] gi|212665380|gb|EEB25952.1| hypothetical protein BACDOR_01483 [Bacteroides dorei DSM 17855] Length = 308 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGHS +STT + +Y HP++ QK + Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297 >gi|209517723|ref|ZP_03266560.1| integrase family protein [Burkholderia sp. H160] gi|209501898|gb|EEA01917.1| integrase family protein [Burkholderia sp. H160] Length = 410 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH LRH+ +H G DLR+I+ LGH L+TT +Y Sbjct: 340 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLY 377 >gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 327 Score = 40.4 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H LRHS A LL +G D+ I+ LGH+ ++TT Y TN+ KR Sbjct: 259 TPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTTNLQMKR 305 >gi|331663926|ref|ZP_08364836.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] gi|331059725|gb|EGI31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] Length = 209 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L NG D R IQ LGH + T IYT NS R +++ Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185 >gi|154485138|ref|ZP_02027586.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC 27560] gi|149734091|gb|EDM50210.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC 27560] Length = 432 Score = 40.4 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LLSNG + +Q +LGH+ +STT Sbjct: 374 HMLRHTYTSNLLSNGAAPKDVQELLGHADVSTT 406 >gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383] gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383] Length = 578 Score = 40.4 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L +++ L H+ +STT IY Sbjct: 521 SPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIY 558 >gi|26248739|ref|NP_754779.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073] gi|26109145|gb|AAN81347.1|AE016764_29 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073] gi|307554410|gb|ADN47185.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972] Length = 209 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L NG D R IQ LGH + T IYT NS R +++ Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185 >gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 297 Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H R FA L NGGD+ ++Q I+GHS L T+ Y Sbjct: 241 HAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRY 276 >gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A] gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A] Length = 407 Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 345 TLTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387 >gi|311741847|ref|ZP_07715658.1| phage-related integrase [Aeromicrobium marinum DSM 15272] gi|311314853|gb|EFQ84759.1| phage-related integrase [Aeromicrobium marinum DSM 15272] Length = 425 Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 29/43 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H +RH+ AT LL G D R++++ILGHS + T++ Y +V + Sbjct: 357 GHEIRHTTATILLEIGADPRTVEAILGHSSIVTSRGYQHVRDE 399 >gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 171 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ AT LL+ G + + ILGH + T+IY + K+ +E Sbjct: 108 TYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLE 155 >gi|291550900|emb|CBL27162.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 382 Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 13/58 (22%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FAT + G D++++ ILGHS ++TT + HPS+ QK Sbjct: 324 HCLRHTFATRCVELGFDMKTLSEILGHSNINTT-------------LNRYVHPSMEQK 368 >gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii DSM 18315] gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii DSM 18315] Length = 425 Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 363 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDR 413 >gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 559 Score = 40.4 bits (93), Expect = 0.092, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H LRH+ ATH L+ G +L +++ L H+ +STT +Y +V R M+ Sbjct: 505 SPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMD 555 >gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 442 Score = 40.4 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H +RHSFA+ ++ G L + +LGHS TT+ Y ++++ + E+ + Sbjct: 372 HDMRHSFASFAVAGGASLFLVSKLLGHSNSRTTERYAHLSADPLQEVVNH 421 >gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] Length = 292 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T ++LRHSF HL+ +G D+ ++Q ++G S LS Y K Sbjct: 237 TPYSLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKAKGK 280 >gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 391 Score = 40.4 bits (93), Expect = 0.093, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48 H +RH++AT L G L+++ +LGHS +S T IYT+V K+ Sbjct: 335 HAIRHTYATKLFERGVPLKTVSELLGHSNISITANIYTHVIPKQ 378 >gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 391 Score = 40.4 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH+FAT L G ++++Q ILGHS ++ T Y++V + ++E Sbjct: 328 HDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIE 374 >gi|331270786|ref|YP_004397223.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329127504|gb|AEB77447.1| integrase/recombinase [Clostridium botulinum BKT015925] Length = 272 Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH + +L+ G + +++ + GH +STT IYT + K++++I +Q Sbjct: 222 HAFRHLYCINLVDRGIPIDAVKDLAGHENISTTTIYTRKSKKQLLDIINQ 271 >gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 367 Score = 40.0 bits (92), Expect = 0.093, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + LS G + ++ +LGH+ + TTQIY + ++++ Sbjct: 302 TFHLARHTFATTITLSQGMPIETVSRLLGHTNIKTTQIYAKITNEKI 348 >gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 409 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HT RH+FAT + L+ G L ++ +LGH ++TTQIY + + ++ Sbjct: 341 FNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDKI 390 >gi|293415643|ref|ZP_06658286.1| type 1 fimbriae regulatory protein [Escherichia coli B185] gi|291433291|gb|EFF06270.1| type 1 fimbriae regulatory protein [Escherichia coli B185] Length = 209 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L NG D R IQ LGH + T IYT NS R +++ Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185 >gi|229119225|ref|ZP_04248533.1| Integrase-recombinase [Bacillus cereus Rock1-3] gi|228664222|gb|EEL19755.1| Integrase-recombinase [Bacillus cereus Rock1-3] Length = 390 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 330 TVTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra] gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra] Length = 331 Score = 40.0 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ +++G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329 >gi|167753997|ref|ZP_02426124.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216] gi|167658622|gb|EDS02752.1| hypothetical protein ALIPUT_02283 [Alistipes putredinis DSM 17216] Length = 403 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 27/43 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 M T + RH+FAT L +G ++ I LGHS LSTTQIY + Sbjct: 346 MPLTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 388 >gi|160934939|ref|ZP_02082325.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753] gi|156866392|gb|EDO59764.1| hypothetical protein CLOLEP_03814 [Clostridium leptum DSM 753] Length = 345 Score = 40.0 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG L+ IQ LGHS STT IY +++ Sbjct: 265 HDLRHSCASLLLANGVHLKQIQDWLGHSDFSTTANIYAHLD 305 >gi|229186763|ref|ZP_04313920.1| Integrase-recombinase [Bacillus cereus BGSC 6E1] gi|228596698|gb|EEK54361.1| Integrase-recombinase [Bacillus cereus BGSC 6E1] Length = 390 Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 291 Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHS+A +++ G+ ++Q LGHS + TQ Y N+N Sbjct: 228 HKLRHSYARSYIASNGNPMALQETLGHSSIIVTQRYVNLN 267 >gi|229048170|ref|ZP_04193739.1| Phage integrase [Bacillus cereus AH676] gi|228723157|gb|EEL74533.1| Phage integrase [Bacillus cereus AH676] Length = 360 Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 +AH LRH+FAT+ + G D+ ++ +LGHS +STT Y +S Sbjct: 289 SAHQLRHAFATNYVELGVDILTMSKLLGHSNVSTTAGYLEPSS 331 >gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3] gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3] Length = 404 Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH RH+FAT + L G + ++ +LGHS + TT+ Y +V K++ + ++Q Sbjct: 340 SAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQ 392 >gi|227887411|ref|ZP_04005216.1| phage integrase family site-specific recombinase [Escherichia coli 83972] gi|300983731|ref|ZP_07176712.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|301049115|ref|ZP_07196096.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|227835761|gb|EEJ46227.1| phage integrase family site-specific recombinase [Escherichia coli 83972] gi|300299061|gb|EFJ55446.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|300408460|gb|EFJ91998.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|315292311|gb|EFU51663.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1] Length = 179 Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L NG D R IQ LGH + T IYT NS R +++ Sbjct: 107 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 155 >gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 316 Score = 40.0 bits (92), Expect = 0.096, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHPSITQ 62 HTLRH+F +HL G R+I + GH L TTQ Y +++ + + + ++ PS Q Sbjct: 240 HTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLSPAALESSIGLLNRARPSWAQ 299 >gi|251796688|ref|YP_003011419.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. JDR-2] gi|247544314|gb|ACT01333.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 348 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSFAT + L N D+ Q LGH+ TTQIY ++ K M E D+ Sbjct: 289 SVHKLRHSFATDYYLRN--DIYMTQEQLGHASPETTQIYAHLTDKTMAEAIDR 339 >gi|157311136|ref|YP_001469181.1| integrase [Streptococcus phage P9] gi|119104285|gb|ABL61030.1| integrase [Streptococcus phage P9] Length = 359 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 26/35 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH++A++L++ G DL S+ +LGH L+ T Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329 >gi|187924023|ref|YP_001895665.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187715217|gb|ACD16441.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 422 Score = 40.0 bits (92), Expect = 0.097, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55 +AH LRH+ +H G DLR+I+ LGH L+TT +Y + + R E D+ Sbjct: 357 SAHWLRHTAGSHQADGGVDLRTIRDNLGHVSLNTTSLYLHTEDDARHRETVDR 409 >gi|295133121|ref|YP_003583797.1| transposase [Zunongwangia profunda SM-A87] gi|294981136|gb|ADF51601.1| putative transposase [Zunongwangia profunda SM-A87] Length = 426 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L N + ++ +LGH++LSTTQ Y V K++ Sbjct: 349 TFHVARHTFATTIALLNDVPIETVSKMLGHTKLSTTQKYARVIEKKI 395 >gi|256838396|ref|ZP_05543906.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739315|gb|EEU52639.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 211 Score = 40.0 bits (92), Expect = 0.097, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 26/34 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 H RHSFA ++L+NG +++++ S+LGHS L T+ Sbjct: 156 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189 >gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572434|ref|ZP_04849836.1| integrase [Bacteroides sp. 1_1_6] gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837849|gb|EES65938.1| integrase [Bacteroides sp. 1_1_6] Length = 403 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 30/44 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T ++++G + SI ++GH+ +++TQ+Y V +++ Sbjct: 339 HMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKI 382 >gi|167039091|ref|YP_001662076.1| phage integrase family protein [Thermoanaerobacter sp. X514] gi|166853331|gb|ABY91740.1| phage integrase family protein [Thermoanaerobacter sp. X514] Length = 132 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LR++FA LL G L+ +Q + GH+++STT ++ S ++E+ Sbjct: 82 HALRYTFAARLLEAGVQLKVVQKLFGHTQISTT---ADIYSHVLLEV 125 >gi|317497959|ref|ZP_07956266.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894758|gb|EFV16933.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 487 Score = 40.0 bits (92), Expect = 0.098, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIY 53 T+H R + T +LS G ++ IQ +LGHS S T+ Y +V K E++ Sbjct: 315 TSHQFRRTLGTDMLSKGTNINVIQQVLGHSDASVTKRFYADVKDKERAEVF 365 >gi|332653263|ref|ZP_08419008.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518409|gb|EGJ48012.1| phage integrase [Ruminococcaceae bacterium D16] Length = 527 Score = 40.0 bits (92), Expect = 0.098, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L NG D++++ +I+GH TT YT++ Sbjct: 323 HDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHI 362 >gi|301024203|ref|ZP_07187907.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] gi|300396658|gb|EFJ80196.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] Length = 179 Score = 40.0 bits (92), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L NG D R IQ LGH + T IYT NS R +++ Sbjct: 107 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 155 >gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 401 Score = 40.0 bits (92), Expect = 0.098, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 28/42 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 +H LRH+FAT L++ G L I+ +LGH+ L TTQ Y + S Sbjct: 315 SHKLRHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLHTVS 356 >gi|257413868|ref|ZP_04744502.2| putative phage integrase [Roseburia intestinalis L1-82] gi|257202050|gb|EEV00335.1| putative phage integrase [Roseburia intestinalis L1-82] Length = 452 Score = 40.0 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 394 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 426 >gi|256751550|ref|ZP_05492426.1| phage integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749500|gb|EEU62528.1| phage integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 64 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LR++FA LL G L+ +Q + GH+++STT IY++V Sbjct: 14 HALRYTFAARLLEAGVQLKVVQKLFGHTQISTTADIYSHV 53 >gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136] gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136] Length = 413 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT LS G + ++ +LGH+ + TTQIY + ++++ E Sbjct: 343 TFHLARHTFATTTTLSKGVPIETVSKLLGHTNIKTTQIYARITNEKIRE 391 >gi|170684056|ref|YP_001744555.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5] gi|218700830|ref|YP_002408459.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39] gi|170521774|gb|ACB19952.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli SMS-3-5] gi|218370816|emb|CAR18629.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39] Length = 209 Score = 40.0 bits (92), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L NG D R IQ LGH + T IYT NS R +++ Sbjct: 137 PHMLRHACGYSLADNGVDTRLIQDYLGHRNIRHTVIYTASNSMRFEKMW 185 >gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 413 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 + H LRH+F + L + +++ IQ I+GH + TT IYT VN Sbjct: 353 SCHVLRHTFCSRLCESDMNVKVIQEIMGHKNVETTLDIYTEVN 395 >gi|301307765|ref|ZP_07213721.1| integrase [Bacteroides sp. 20_3] gi|300834108|gb|EFK64722.1| integrase [Bacteroides sp. 20_3] Length = 211 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 26/34 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 H RHSFA ++L+NG +++++ S+LGHS L T+ Sbjct: 156 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 189 >gi|253571742|ref|ZP_04849148.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838950|gb|EES67035.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 407 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + L +G L ++ +LGH+R+ TTQIY V ++ Sbjct: 344 HAGRHTYATEITLGHGVPLETVSKMLGHARIETTQIYAKVTDDKI 388 >gi|224024631|ref|ZP_03642997.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM 18228] gi|224017853|gb|EEF75865.1| hypothetical protein BACCOPRO_01358 [Bacteroides coprophilus DSM 18228] Length = 410 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+AT + L+NG + ++ +LGHS + TQ Y V Sbjct: 349 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 390 >gi|189460579|ref|ZP_03009364.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136] gi|189432823|gb|EDV01808.1| hypothetical protein BACCOP_01220 [Bacteroides coprocola DSM 17136] Length = 149 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+ RH FAT LS G + S+ +LGH+ ++TTQ Y + ++ + Sbjct: 84 HSSRHGFATLALSKGVPIESVSRVLGHTNITTTQKYCKITTENI 127 >gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208] Length = 343 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TAH RH++A ++ NG D ++Q I G S + T + Y ++++ M +D P T Sbjct: 279 VTAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRYIQMDTRAMRRSHDDFSPLTTI 338 Query: 63 KDKK 66 + KK Sbjct: 339 RKKK 342 >gi|290474812|ref|YP_003467692.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289174125|emb|CBJ80912.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 210 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 26/53 (49%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LRHS L NG D R IQ LGH + T IYT N+ R I+ Sbjct: 131 ICANPHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVIYTASNAGRFDGIW 183 >gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 431 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+F T LS G + SI ++GH+ +++TQIY V Sbjct: 349 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQV 387 >gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319] gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 345 TSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNR 397 >gi|241762717|ref|ZP_04760781.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241368136|gb|EER62328.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 760 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 4 TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTHP 58 + H LRH+FA + L ++G DL +++ILGH ++TT +Y S+R I T P Sbjct: 703 STHWLRHTFAHNALRASGKDLELVKTILGHQSITTTALYVKAEMSQRAATINMMTPP 759 >gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1] gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1] gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 334 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 13/58 (22%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H+LRHSFA+ + NG D +++ ILGHS + T M+IY H S+ QK Sbjct: 279 HSLRHSFASKWIENGFDSKALSEILGHSSVKIT-----------MDIY--VHSSMRQK 323 >gi|150004634|ref|YP_001299378.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149933058|gb|ABR39756.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 345 TLTTHVARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387 >gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1] gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1] Length = 434 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFAT L G + + LGH+++STT Y N +Q I+ Sbjct: 357 TNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAEDAQRRFLEQHTAGIS 414 >gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361] gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361] Length = 384 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH RH+FAT + L G + ++ +LGHS + TT+ Y +V K++ + ++Q Sbjct: 320 SAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQ 372 >gi|254461123|ref|ZP_05074539.1| phage integrase family protein [Rhodobacterales bacterium HTCC2083] gi|206677712|gb|EDZ42199.1| phage integrase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 191 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+H+ R +F T L S G +R + + GHS ++TTQ Y +VN++++ Sbjct: 139 TSHSGRRTFITRLASKGVGVRVLAELAGHSSIATTQRYIDVNAEQL 184 >gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 380 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT LL G D + IQ+ LGHS ++TT IY++VN Sbjct: 324 HDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHVN 364 >gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614] Length = 368 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 27/36 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A+ LL+ G DL+S+ +GH++++TTQ Y Sbjct: 312 HDLRHAHASWLLAGGSDLKSVMDRMGHAQITTTQKY 347 >gi|322412565|gb|EFY03473.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 355 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 26/35 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH++A++L++ G DL S+ +LGH L+ T Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329 >gi|27363563|ref|NP_759091.1| site-specific recombinase XerC [Vibrio vulnificus CMCP6] gi|27359679|gb|AAO08618.1| Site-specific recombinase XerC [Vibrio vulnificus CMCP6] Length = 234 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Query: 4 TAHTLRHSFATHLL---SNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRHS+A L ++ LR +Q++LGHS ++TT +YT Sbjct: 174 TPHWLRHSWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYT 215 >gi|295701377|ref|YP_003610378.1| integrase [Burkholderia sp. CCGE1002] gi|295441700|gb|ADG20867.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 570 Score = 40.0 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 + H +RH+ ATH L G +L +++ L H+ +STT IY + + KR +I Sbjct: 511 SPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQI 560 >gi|258647347|ref|ZP_05734816.1| integrase [Prevotella tannerae ATCC 51259] gi|260852872|gb|EEX72741.1| integrase [Prevotella tannerae ATCC 51259] Length = 400 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF + L+S G SI ++GH+ +++TQ Y ++ K++ E D+ Sbjct: 341 HQARHSFGSFLISAGICTESIAKMMGHASITSTQNYAKISEKKISEDMDR 390 >gi|228924542|ref|ZP_04087741.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835124|gb|EEM80566.1| Integrase-recombinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 390 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|229079526|ref|ZP_04212065.1| Integrase-recombinase [Bacillus cereus Rock4-2] gi|228703805|gb|EEL56252.1| Integrase-recombinase [Bacillus cereus Rock4-2] Length = 390 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 310 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + LRH+FA L NGG S+Q LGH+ L T+ Y + + EI + P Sbjct: 241 YDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINNTASP 293 >gi|229051823|ref|ZP_04195272.1| Integrase-recombinase [Bacillus cereus AH676] gi|229125217|ref|ZP_04254335.1| Integrase-recombinase [Bacillus cereus 95/8201] gi|228658243|gb|EEL13965.1| Integrase-recombinase [Bacillus cereus 95/8201] gi|228721530|gb|EEL73025.1| Integrase-recombinase [Bacillus cereus AH676] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216] gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC 43183] gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216] gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F + + L G + +I +LGH+ L+TTQ+Y V K++ E D+ Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDK 397 >gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] Length = 321 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + HT RH+FA L G ++ +Q ILGHS L ++Y ++ S + Sbjct: 262 SPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEI 307 >gi|301308503|ref|ZP_07214457.1| integrase [Bacteroides sp. 20_3] gi|300833973|gb|EFK64589.1| integrase [Bacteroides sp. 20_3] Length = 442 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T + RH++AT + LSNG + +I ++GHS + TTQIY + ++++ Sbjct: 348 TYYMARHTYATEVCLSNGVPIETISRMMGHSNIRTTQIYAEITNQKI 394 >gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7] gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 401 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++A+ L G D+ ++Q +L H +STTQIY + + E D+ Sbjct: 317 TFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368 >gi|116687240|ref|YP_840486.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652955|gb|ABK13593.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 563 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ ATH L+ G +L ++ L H+ +STT Y + + R +DQ Sbjct: 505 SPHWMRHTHATHALARGSELIMVRDNLRHASISTTSTYLHGDEIRRARQFDQ 556 >gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 297 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H R FA L NGGD+ ++Q I+GHS L T+ Y Sbjct: 241 HAFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRY 276 >gi|310778729|ref|YP_003967062.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309748052|gb|ADO82714.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 324 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H +RH+ AT L G D+ I+ LGH+ T++Y +N+K ++E Sbjct: 268 SPHNIRHAVATELSLQGADIMEIRDFLGHADTKVTEVY--INAKGLLE 313 >gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12] gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12] gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12] Length = 363 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FA L G ++ +I +L H ++S+TQIY V ++++ E Sbjct: 310 TFHCFRHTFAMLLQEKGVEIYTISKLLAHKQVSSTQIYAKVTNQQVNE 357 >gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 292 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 28/38 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + ++ RH+FA H+LS+G D+ ++ ++GH L +T++Y Sbjct: 247 SPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284 >gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 331 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ +++G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329 >gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp. 3_1_40A] gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 401 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++A+ L G D+ ++Q +L H +STTQIY + + E D+ Sbjct: 317 TFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368 >gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36] gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F + + L G + +I +LGH+ L+TTQ+Y V+ K++ E D+ Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVSPKKLFEDMDK 397 >gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 335 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH R + AT LL+ G + +Q ILGH+ +TTQIY ++ + + Y Sbjct: 282 AHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEY 330 >gi|229073564|ref|ZP_04206686.1| Integrase-recombinase [Bacillus cereus F65185] gi|228709566|gb|EEL61618.1| Integrase-recombinase [Bacillus cereus F65185] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|94989099|ref|YP_597200.1| DNA integration/recombination/inversion protein [Streptococcus phage 9428.3] gi|94992989|ref|YP_601088.1| DNA integration/recombination/inversion protein [Streptococcus phage 2096.2] gi|94542607|gb|ABF32656.1| DNA integration/recombination/inversion protein [Streptococcus phage 9428.3] gi|94546497|gb|ABF36544.1| DNA integration/recombination/inversion protein [Streptococcus phage 2096.2] Length = 362 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 26/35 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH++A++L++ G DL S+ +LGH L+ T Sbjct: 298 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 332 >gi|319783595|ref|YP_004143071.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169483|gb|ADV13021.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 439 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 10/56 (17%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRHS + +S G L + +ILGH+ +TQIY +V Q HP+ Sbjct: 363 TPHVLRHSLGSAAVSGGMALPMVAAILGHADTRSTQIYAHV----------QMHPA 408 >gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] Length = 348 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FAT NG + +Q ++GH+ ++TT+ Y ++ + E + + P Sbjct: 279 NVSPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSP 335 >gi|313112639|ref|ZP_07798297.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310625062|gb|EFQ08359.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 77 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH+F T++ G D++S+Q ++GHS S T +YT+ + + + ++Q Sbjct: 20 TPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 72 >gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 410 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLSNG + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 386 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 11/64 (17%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S A+ LRH+FA+ + NG D+ + +LGHS L TT + Y + PS+ Sbjct: 317 VSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTT-----------LTTYTRYIPSL 365 Query: 61 TQKD 64 +KD Sbjct: 366 ERKD 369 >gi|154488041|ref|ZP_02029158.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis L2-32] gi|154083514|gb|EDN82559.1| hypothetical protein BIFADO_01611 [Bifidobacterium adolescentis L2-32] Length = 237 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH+LRH +AT + DL + +LGH+ + TTQ Y + R+ + T Sbjct: 181 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 233 >gi|291548403|emb|CBL21511.1| Site-specific recombinase XerC [Ruminococcus sp. SR1/5] Length = 98 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 13/64 (20%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H+LRH+FAT G D +++ ILGHS + T M+IY H SI Sbjct: 41 SINIHSLRHAFATRCTEMGFDSKTLSEILGHSSVKIT-----------MDIY--VHSSIK 87 Query: 62 QKDK 65 QK K Sbjct: 88 QKQK 91 >gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 376 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H R + AT LLS G + ++ LGH +L TT IY V ++ Sbjct: 325 HRFRRTIATDLLSRGMPIEQVKEFLGHEKLDTTMIYCTVKTE 366 >gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 414 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHPS 59 T H RH+FAT + LSNG + S+ +LGH L TTQ Y + +++ M++ + Sbjct: 345 TFHIARHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKILDQKISHDMQMLKEKFEQ 404 Query: 60 ITQKDK 65 I DK Sbjct: 405 IPLNDK 410 >gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787] gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787] Length = 345 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H++RH+ H+L G + I++ LGH+ + TTQIYT Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTE 304 >gi|198282466|ref|YP_002218787.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282807|ref|YP_002219128.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665405|ref|YP_002425001.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666076|ref|YP_002426784.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666400|ref|YP_002425323.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246987|gb|ACH82580.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247328|gb|ACH82921.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517618|gb|ACK78204.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518289|gb|ACK78875.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518613|gb|ACK79199.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 414 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 26/41 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRH+ A+HLLS+G L+ I LGH ++ YT V+ Sbjct: 358 AHCLRHACASHLLSSGFSLKQIGDHLGHRNANSALSYTKVD 398 >gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149] gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149] Length = 345 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H++RH+ H+L G + I++ LGH+ + TTQIYT Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTE 304 >gi|306826811|ref|ZP_07460113.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes ATCC 10782] gi|304431100|gb|EFM34107.1| phage integrase family prophage LambdaSa2 [Streptococcus pyogenes ATCC 10782] Length = 359 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 26/35 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH++A++L++ G DL S+ +LGH L+ T Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329 >gi|261367877|ref|ZP_05980760.1| putative transposase [Subdoligranulum variabile DSM 15176] gi|282570685|gb|EFB76220.1| putative transposase [Subdoligranulum variabile DSM 15176] Length = 411 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 +AH LRH+F T L +L+ IQS++GH + TT +Y ++ E +++ Sbjct: 351 SAHHLRHTFCTRLCEQETNLKVIQSVMGHKDIKTTMDVYAEATEEKKQESFER 403 >gi|218134836|ref|ZP_03463640.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC 43243] gi|217990221|gb|EEC56232.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC 43243] Length = 136 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 78 HKLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 110 >gi|209518165|ref|ZP_03266993.1| integrase family protein [Burkholderia sp. H160] gi|209501372|gb|EEA01400.1| integrase family protein [Burkholderia sp. H160] Length = 570 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 + H +RH+ ATH L G +L +++ L H+ +STT IY + + KR +I Sbjct: 511 SPHWMRHTHATHALGRGAELTTVRDNLRHASVSTTSIYLHSDEVKRARQI 560 >gi|71911280|ref|YP_282830.1| integrase [Streptococcus pyogenes phage 5005.3] gi|71854062|gb|AAZ52085.1| phi5005.3 integrase [Streptococcus pyogenes phage 5005.3] Length = 359 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 26/35 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH++A++L++ G DL S+ +LGH L+ T Sbjct: 295 TNHSLRHTYASYLIAQGVDLISVSKLLGHENLNIT 329 >gi|324323967|gb|ADY25010.1| integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|206972947|ref|ZP_03233869.1| integrase family protein [Bacillus cereus AH1134] gi|206731831|gb|EDZ49031.1| integrase family protein [Bacillus cereus AH1134] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|152983365|ref|YP_001354856.1| integrase [Janthinobacterium sp. Marseille] gi|151283442|gb|ABR91852.1| integrase [Janthinobacterium sp. Marseille] Length = 325 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RH+ AT LL +G +L ++ ILGH+++ TT Y ++ Sbjct: 257 VHSFRHTLATRLLRSGMNLYEVKEILGHAKIETTMTYAHL 296 >gi|47565414|ref|ZP_00236456.1| putative integrase-recombinase [Bacillus cereus G9241] gi|208742323|ref|YP_002267775.1| integrase family protein [Bacillus cereus] gi|47557768|gb|EAL16094.1| putative integrase-recombinase [Bacillus cereus G9241] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|324323824|gb|ADY24868.1| integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|240172574|ref|ZP_04751233.1| integrase [Mycobacterium kansasii ATCC 12478] Length = 55 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHTLRH A+ ++R++Q++LGH + TTQ Y + Sbjct: 2 TAHTLRHRMASRAFRGSRNIRAVQALLGHESILTTQRYVAI 42 >gi|228988991|ref|ZP_04149022.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770753|gb|EEM19287.1| Integrase-recombinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|229113245|ref|ZP_04242740.1| Integrase-recombinase [Bacillus cereus Rock1-15] gi|228670271|gb|EEL25619.1| Integrase-recombinase [Bacillus cereus Rock1-15] Length = 390 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2] gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2] Length = 315 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RH+FAT LL G D+ +I+ +LGHS + TT Y Sbjct: 262 HQYRHTFATILLEKGVDINTIKELLGHSSIQTTASY 297 >gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR +FA+ +L NG D+ +++ +GH+ ++TTQ Y +R+ + Sbjct: 263 HDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQ 308 >gi|332671639|ref|YP_004454647.1| integrase family protein [Cellulomonas fimi ATCC 484] gi|332340677|gb|AEE47260.1| integrase family protein [Cellulomonas fimi ATCC 484] Length = 380 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 26/36 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 TT H LRH+ A+ L++ G D++++Q ILGHS + T Sbjct: 302 TTIHDLRHTAASLLIAAGADVKAVQVILGHSTATMT 337 >gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319] gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319] Length = 385 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 291 SHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKGKI 336 >gi|213963816|ref|ZP_03392064.1| integrase [Capnocytophaga sputigena Capno] gi|213953496|gb|EEB64830.1| integrase [Capnocytophaga sputigena Capno] Length = 411 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T ++ G L S+ ++GH L TTQIY + + ++ Sbjct: 347 HWARHTFGTLFVTEGIPLESVSKMMGHKDLRTTQIYAKITNNKI 390 >gi|189439994|ref|YP_001955075.1| Integrase [Bifidobacterium longum DJO10A] gi|189428429|gb|ACD98577.1| Integrase [Bifidobacterium longum DJO10A] Length = 223 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH+LRH +AT + DL + +LGH+ + TTQ Y + R+ + T Sbjct: 167 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 219 >gi|29349431|ref|NP_812934.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29341340|gb|AAO79128.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 118 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+FAT + LS+G + ++ +LGH+ + TTQIY + ++M+ Sbjct: 47 HMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 93 >gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 391 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG ++ IQ LGHS STT IY +++ Sbjct: 329 HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369 >gi|229179599|ref|ZP_04306951.1| Integrase-recombinase [Bacillus cereus 172560W] gi|228603893|gb|EEK61362.1| Integrase-recombinase [Bacillus cereus 172560W] Length = 390 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|229191399|ref|ZP_04318384.1| Integrase-recombinase [Bacillus cereus ATCC 10876] gi|228592081|gb|EEK49915.1| Integrase-recombinase [Bacillus cereus ATCC 10876] Length = 390 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] Length = 357 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H RH++A + GGD +Q +LGH+ L+ T+ Y + + + YD +P Sbjct: 280 TSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDALNP 335 >gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 421 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + G +R +Q LGH+ + T Y ++ +++ D+ P Sbjct: 322 HMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLAEGIGLDLIDRIAP 374 >gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 357 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T + RHSFA LL NG +L+S+ +GHS TT Y N Sbjct: 301 TFYCARHSFAVLLLLNGANLKSVADAMGHSSTKTTLKYLN 340 >gi|158318108|ref|YP_001510616.1| integrase family protein [Frankia sp. EAN1pec] gi|158113513|gb|ABW15710.1| integrase family protein [Frankia sp. EAN1pec] Length = 358 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L G +L +IQ +LGHS TT Y +V+S + + + Sbjct: 293 TPHVLRHYCASELYRAGMNLFAIQELLGHSWTGTTARYVHVHSTHVEDAW 342 >gi|329963222|ref|ZP_08300959.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528918|gb|EGF55858.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 308 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGHS +STT + +Y HP++ QK + Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHSNISTT-----------LNLY--VHPNMEQKKR 297 >gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64] gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64] Length = 253 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY S EI D+ Sbjct: 200 HSFRHRFAKNFLEKYNDISFLADLMGHESIETTRIYLRKTSNEQQEIVDK 249 >gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612] gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612] Length = 336 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 5/56 (8%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNS----KRMMEIYD 54 T H+LRHSFAT + +G ++ I ++LGHS+ +TT IY +++ + MM++ D Sbjct: 265 TFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLHLSESFIRQEMMKMKD 320 >gi|169350275|ref|ZP_02867213.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552] gi|169293058|gb|EDS75191.1| hypothetical protein CLOSPI_01019 [Clostridium spiroforme DSM 1552] Length = 317 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH++AT+ + N D++S+ +LGHS +S T Sbjct: 254 HTLRHTYATNCVMNDIDIKSLSEMLGHSNVSIT 286 >gi|330990337|ref|ZP_08314307.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] gi|329762603|gb|EGG79077.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] Length = 136 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + + LRH+F +S+G L +Q LGH++LSTT IY + +I Sbjct: 80 AASPKGLRHAFGVAAVSSGIPLNMVQKWLGHAQLSTTAIYADAVGAEEQDI 130 >gi|291538239|emb|CBL11350.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 76 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 3/44 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H LRH+F ++LLSNG + +Q +LGH+ +STT IY +SKR Sbjct: 18 HMLRHTFTSNLLSNGVAPKDVQELLGHADVSTTMNIY--AHSKR 59 >gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 388 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L G + SI ++GHS +++TQIY + +++ Sbjct: 336 HVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKI 379 >gi|207724624|ref|YP_002255021.1| integrase / recombinase protein [Ralstonia solanacearum MolK2] gi|206589846|emb|CAQ36807.1| integrase / recombinase protein [Ralstonia solanacearum MolK2] Length = 397 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S +AH +RH+ +H+ DLR ++ LGH+ L+TT +Y + + +H Sbjct: 337 SASAHWIRHTAGSHMTDQQVDLRFVRDNLGHASLATTSVYLHAEDDARHQATQASH 392 >gi|189462732|ref|ZP_03011517.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136] gi|189430601|gb|EDU99585.1| hypothetical protein BACCOP_03429 [Bacteroides coprocola DSM 17136] Length = 387 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RHSFA L+ G + S+ ILGH+ ++TTQIY Sbjct: 344 HLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYA 380 >gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH FA L+ G +L +Q +LGH R+ TT Y N Sbjct: 233 PHMLRHFFAQTLIDKGLNLYDVQQLLGHQRIETTLRYKKPN 273 >gi|120406878|ref|YP_956707.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959696|gb|ABM16701.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 395 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRH+ AT +L G L I +L H L+TT +Y V+ Sbjct: 339 AHRLRHTLATEMLQRGVKLADIGQVLRHRDLATTALYAKVD 379 >gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar chinensis CT-43] Length = 365 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 26/38 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 ++ TAHTLRH+ AT L G D IQ +LGH+++ TT Sbjct: 301 INFTAHTLRHTCATQLYDLGMDAGIIQKLLGHAQVQTT 338 >gi|226325781|ref|ZP_03801299.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758] gi|225205905|gb|EEG88259.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758] Length = 124 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LLSNG + +Q +LGH+ +STT Sbjct: 66 HMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTT 98 >gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+F + L G ++IQ + GH LSTTQ Y +++ Sbjct: 307 HVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRYMHLS 346 >gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 379 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+H RH+FAT + L+NG + I +LGH+ + TTQ+Y ++ Sbjct: 322 TSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHI 363 >gi|38637764|ref|NP_942738.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527102|gb|AAP85852.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 386 Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S +AH LRH+ +H+ DLR ++ GHS LSTT Y + E + H Sbjct: 323 SASAHWLRHTAGSHMTDQQVDLRFVRDNFGHSSLSTTSGYLHSEEDARHEATQERH 378 >gi|86144157|ref|ZP_01062494.1| transposase [Leeuwenhoekiella blandensis MED217] gi|85829419|gb|EAQ47884.1| transposase [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TA+ RHSFAT + L++I +LGH+ L+TTQ+Y Sbjct: 349 TAYVARHSFATQAMLQEVPLQAISEMLGHTSLNTTQVY 386 >gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7] gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7] Length = 413 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 11/63 (17%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H+LRH+FAT L +G +++ IQ +LGH+ +TT M +Y + + Q+ Sbjct: 348 SCHSLRHTFATRLCESGVNIKVIQDVLGHADFNTT-----------MNVYAEATKDLKQR 396 Query: 64 DKK 66 + K Sbjct: 397 EFK 399 >gi|253579366|ref|ZP_04856636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849464|gb|EES77424.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 315 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H+LRH+F T + G +++ IQ LGHS +STT IY +V + E Sbjct: 256 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAE 304 >gi|237794996|ref|YP_002862548.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261916|gb|ACQ52949.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 357 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH++AT L+S+ D ++ +ILGH T +IY++V + MME Sbjct: 301 SIHELRHTYATKLISSRMDFKTAANILGHDIEMTMKIYSHV-TDEMME 347 >gi|229099925|ref|ZP_04230847.1| Integrase-recombinase [Bacillus cereus Rock3-29] gi|228683470|gb|EEL37426.1| Integrase-recombinase [Bacillus cereus Rock3-29] Length = 390 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666] gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666] Length = 557 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN---VNSKRMME 51 T H +RH+ A+H L G +L +++ L HS ++TT IY + V R M+ Sbjct: 501 TPHWMRHTHASHALQGGAELTAVRDNLRHSSIATTSIYLHSDEVKRARQMD 551 >gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] Length = 385 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 S T H RHS A+ L S G ++ +Q LGH TT IYT+V K+ E Sbjct: 324 SITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQGQE 374 >gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH+ AT LL +G D++++Q LGH+ ++TT IY++V K E D Sbjct: 326 HDLRHTSATLLLESGVDMKTVQERLGHASMNTTSNIYSHVTEKMNREATD 375 >gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185] gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185] Length = 410 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+ AT LLSNG + ++ +LGH+ + TTQIY + S+++ Sbjct: 344 HVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITSQKI 388 >gi|91780851|ref|YP_556058.1| putative phage integrase [Burkholderia xenovorans LB400] gi|91693511|gb|ABE36708.1| Putative phage integrase [Burkholderia xenovorans LB400] Length = 266 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 18/30 (60%), Positives = 22/30 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 + HTLRHSFATHLL D+R IQ +LG + Sbjct: 233 SMHTLRHSFATHLLEQKVDIRVIQVLLGRA 262 >gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 331 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 26/44 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S T HTLRH+ A L+ +G DL I LGH TTQIY + + Sbjct: 254 SITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHAD 297 >gi|237707916|ref|ZP_04538397.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229458068|gb|EEO63789.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 352 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 AH RH+ A+H L NG ++ I +LGH + TT +Y ++ +++ Sbjct: 269 AHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMVYLDITTEQ 312 >gi|229106636|ref|ZP_04236877.1| Integrase-recombinase [Bacillus cereus Rock3-28] gi|228676818|gb|EEL31423.1| Integrase-recombinase [Bacillus cereus Rock3-28] Length = 390 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|189463399|ref|ZP_03012184.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136] gi|189429828|gb|EDU98812.1| hypothetical protein BACCOP_04118 [Bacteroides coprocola DSM 17136] Length = 385 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+ AT L+ G L ++Q +LGH + TTQ+Y V Sbjct: 333 HTARHTNATLLIYKGVQLSTVQKLLGHRNIKTTQVYGEV 371 >gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14] gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14] Length = 480 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RHS AT+LL +G DL + +GHS ++TTQ Y Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRY 465 >gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101] gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101] Length = 350 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+F H + +GG++ ++Q ILGH + T Y ++ Sbjct: 281 HVLRHTFTAHFMMSGGNILALQKILGHHDIKMTMRYAHL 319 >gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23] gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23] Length = 379 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+H RH+FAT + L+NG + I +LGH+ + TTQ+Y ++ Sbjct: 322 TSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHI 363 >gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28] Length = 422 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH++A LL+NG D+ ++Q +L H+ T +Y Sbjct: 232 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYA 268 >gi|315441478|ref|YP_004074355.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315265133|gb|ADU01874.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 370 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+LRHS+ THL R +Q +GH+ STT IY++V+ + Sbjct: 308 HSLRHSYVTHLTEFDYPERFVQDQVGHAYASTTSIYSHVSDE 349 >gi|315501682|ref|YP_004080569.1| integrase family protein [Micromonospora sp. L5] gi|315408301|gb|ADU06418.1| integrase family protein [Micromonospora sp. L5] Length = 424 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +T H LRH+FA LS GGD+ + +GH+ TTQ + Sbjct: 351 ATRLHDLRHTFAALWLSAGGDIHRLSEQMGHASYETTQKF 390 >gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 389 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+ AT LS G + ++ +LGH+++STTQIY V Sbjct: 330 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKV 372 >gi|171057466|ref|YP_001789815.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774911|gb|ACB33050.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 425 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 32/52 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +S + H+LRH+ A L+++G ++ + +L H L T+ IY ++ + + E+ Sbjct: 365 ISRSCHSLRHTLACRLVNSGSSIKEVADVLRHRSLDTSLIYAKLDLQLLAEV 416 >gi|163943320|ref|YP_001642550.1| integrase family protein [Bacillus weihenstephanensis KBAB4] gi|163865517|gb|ABY46575.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 390 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|134291483|ref|YP_001115252.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134134672|gb|ABO58997.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 565 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H +RH+ A+H L+ G +L ++ L HS +STT Y + + + +DQ S Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEVQRARQFDQAFSS 560 >gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 409 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F + + L G + +I +LGH+ L+TTQ+Y V K++ E D+ Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDK 397 >gi|253573180|ref|ZP_04850548.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251837232|gb|EES65356.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 81 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRHS A+++L NG + I +LGH TT Y +N Sbjct: 13 PHSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 53 >gi|228949488|ref|ZP_04111742.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810211|gb|EEM56578.1| Integrase-recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 390 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|224475956|ref|YP_002633562.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420563|emb|CAL27377.1| phage integrase [Staphylococcus carnosus subsp. carnosus TM300] Length = 349 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 27/33 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|188535993|ref|YP_001911105.1| Putative integrase [Erwinia tasmaniensis Et1/99] gi|188027159|emb|CAO94983.1| Putative integrases, DNA breaking-rejoining enzymes [Erwinia tasmaniensis Et1/99] Length = 309 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+A ++L+ G R + +++GH L T IYT V Sbjct: 227 SPHTFRHSYAMYMLNAGVTDRLLMALMGHRSLKTLGIYTRV 267 >gi|153815404|ref|ZP_01968072.1| hypothetical protein RUMTOR_01638 [Ruminococcus torques ATCC 27756] gi|331089232|ref|ZP_08338134.1| hypothetical protein HMPREF1025_01717 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847263|gb|EDK24181.1| hypothetical protein RUMTOR_01638 [Ruminococcus torques ATCC 27756] gi|330405784|gb|EGG85313.1| hypothetical protein HMPREF1025_01717 [Lachnospiraceae bacterium 3_1_46FAA] Length = 140 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 5/56 (8%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56 H+LRHS T+ L NGGD++++Q GHSR+ T +Y+++ + +R E++++ Sbjct: 33 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSRVDMVTDVYSHIIDEDRRRNAELFEEA 88 >gi|118577353|ref|YP_899593.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504858|gb|ABL01340.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 318 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 3/49 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKR 48 T H LRH+FA L++N +L +I+ +LGHS ++ T + TN N+K+ Sbjct: 256 TGLHILRHTFARRLVNNNTNLETIRDLLGHSNIAITAKFYAKTNENNKK 304 >gi|111225697|ref|YP_716491.1| putative tyrosine recombinase xerD [Frankia alni ACN14a] gi|111153229|emb|CAJ64979.1| putative Tyrosine recombinase xerD [Frankia alni ACN14a] Length = 446 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A+ LL+ G DL+ ++ LGH ++TTQ Y Sbjct: 387 HDLRHAHASWLLAGGADLQVVKERLGHGSIATTQRY 422 >gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 346 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+F + L+ G DLR+ Q + GH +S T Y ++ + ++ P I Sbjct: 289 TWHALRHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQAAIEKLDPKI 345 >gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4] gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4] Length = 311 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T + LRH+FA L D ++Q +LGH LS T+ Y + + +I+++ P + Sbjct: 236 VKVTPYGLRHTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQEDVRQIHEKASPVV 295 >gi|237720976|ref|ZP_04551457.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229449811|gb|EEO55602.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 272 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 ++HT R SFAT+L G DL SI ++GH+ + TQ Y Sbjct: 218 SSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255 >gi|189461433|ref|ZP_03010218.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136] gi|189431962|gb|EDV00947.1| hypothetical protein BACCOP_02089 [Bacteroides coprocola DSM 17136] Length = 382 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 328 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365 >gi|313158156|gb|EFR57561.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 462 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+FA+ L+ +G ++ I+ +LGH+ + TT+IY + +M + D Sbjct: 398 STHIGRHTFASRLVRSGQNMVVIRDLLGHASIRTTEIYAKIMQSQMNDAID 448 >gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 319 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + LRH FA L NGG S+Q I+GH+ L T+ Y + + + +I+ + P Sbjct: 243 PYDLRHMFALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQDLQDIHAKATP 296 >gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] Length = 320 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+FA+ L++ G L +Q +LGHS TT Y ++ ++ Sbjct: 256 HDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLL 300 >gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 331 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS A+ LL++G DL +I ILGHS T+ Y ++ + Sbjct: 263 HDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303 >gi|206577666|ref|YP_002236692.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342] gi|290511258|ref|ZP_06550627.1| tyrosine recombinase [Klebsiella sp. 1_1_55] gi|206566724|gb|ACI08500.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae 342] gi|289776251|gb|EFD84250.1| tyrosine recombinase [Klebsiella sp. 1_1_55] Length = 209 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D T Sbjct: 149 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDNT 199 >gi|329726805|gb|EGG63265.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU144] Length = 349 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 27/33 (81%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HTLRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|238896397|ref|YP_002921135.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044] gi|238548717|dbj|BAH65068.1| site-specific recombinase involved in flagellar phase switching/type 1 fimbriae regulatory protein with FimB [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 202 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R I+++ + + + Sbjct: 133 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNL-LEE 191 Query: 63 KDKK 66 KD+K Sbjct: 192 KDQK 195 >gi|226330025|ref|ZP_03805543.1| hypothetical protein PROPEN_03938 [Proteus penneri ATCC 35198] gi|225200820|gb|EEG83174.1| hypothetical protein PROPEN_03938 [Proteus penneri ATCC 35198] Length = 143 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GH+ + TTQ Y R+ Sbjct: 91 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRL 134 >gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989] gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989] Length = 307 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGHS +STT + +Y HP+ QK K Sbjct: 252 HGLRHSFATRCIESKADYKTVSVLLGHSNISTT-----------LNLY--VHPNKEQKKK 298 >gi|152971805|ref|YP_001336914.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330011065|ref|ZP_08306977.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3] gi|150956654|gb|ABR78684.1| recombinase involved in phase variation; regulator for fimA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|158267621|gb|ABW24952.1| FimE [Klebsiella pneumoniae] gi|257479866|gb|ACV60169.1| FimE [Klebsiella pneumoniae] gi|328534296|gb|EGF60909.1| type 1 fimbriae regulatory protein FimE [Klebsiella sp. MS 92-3] Length = 188 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R I+++ + + + Sbjct: 119 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNL-LEE 177 Query: 63 KDKK 66 KD+K Sbjct: 178 KDQK 181 >gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM 22836] Length = 338 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS A L+ G +L I+ +LGH + T+IY ++S R E ++ I + Sbjct: 259 SPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSSNRKREAIEKASSHIVPE 318 Query: 64 DK 65 ++ Sbjct: 319 ER 320 >gi|237727472|ref|ZP_04557953.1| integrase [Bacteroides sp. D4] gi|229434328|gb|EEO44405.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 371 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 317 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 354 >gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS] gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS] Length = 321 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS AT L+++ DL ++ +LGH + TTQ Y++V K + + Sbjct: 270 HDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVLKKTLQD 315 >gi|164521191|gb|ABY60457.1| phage integrase [Burkholderia andropogonis] Length = 290 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L G +L +++ L H+ LSTT +Y Sbjct: 232 SPHWMRHTHATHALQGGAELTAVRDNLRHASLSTTSMY 269 >gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174] gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174] Length = 407 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 +AH LRH+F T +G D++S+Q I+GH+ ++ T + Y +V+ R+ Sbjct: 347 SAHILRHTFCTRAAESGVDVKSLQYIMGHADITMTMERYNHVDEVRV 393 >gi|313158800|gb|EFR58184.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 259 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++AT + LSNG L ++ +LGH ++TTQIY V Sbjct: 198 HLARHTYATTICLSNGVSLETLSKMLGHKNITTTQIYAKV 237 >gi|296165946|ref|ZP_06848412.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898699|gb|EFG78239.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 647 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H LRH++AT L + G L+++ S+LGH T Y + S + YD+ Sbjct: 480 LMVTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRYATLASPTLRAAYDE 534 >gi|291087353|ref|ZP_06346213.2| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075475|gb|EFE12839.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 363 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ---TH 57 + T H LRH FA G L I LGH + TT Y N++ + ++E+ ++ H Sbjct: 294 IKVTPHMLRHYFANARRKAGWKLELISQALGHRNIETTMRYLNISDEELIEVSEKFYGQH 353 Query: 58 PSITQKDK 65 SI DK Sbjct: 354 QSIYGVDK 361 >gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21] gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21] Length = 392 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H R +F T + GGD++S+ I+GHS T+IY ++ +R Sbjct: 335 TYHCARDTFGTIFIELGGDIKSLCDIMGHSDTRITEIYLKMSDQR 379 >gi|317481410|ref|ZP_07940477.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902395|gb|EFV24282.1| phage integrase [Bacteroides sp. 4_1_36] Length = 410 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRHS A+++L NG + I +LGH TT Y +N Sbjct: 343 HSLRHSLASNMLENGATMPIISEVLGHRNTETTMTYLKIN 382 >gi|30908754|gb|AAP37609.1| IntI [uncultured bacterium] Length = 160 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQ 27 T+ HTLRHSFATH+L G D+R++Q Sbjct: 135 PTSPHTLRHSFATHVLQMGYDIRTVQ 160 >gi|268796563|ref|YP_003310958.1| integrase [Sebaldella termitidis ATCC 33386] gi|268616661|gb|ACZ11027.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 271 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 22/38 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH RH FA + + S+ ILGHS L TT+IYT Sbjct: 219 AHAFRHLFAIQYMKRNNNALSLADILGHSSLETTRIYT 256 >gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 331 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS A+ LL++G DL +I ILGHS T+ Y ++ + Sbjct: 263 HDLRHSCASILLASGADLYTISRILGHSSTKMTERYAHLQT 303 >gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 384 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKR 48 H LRH+ AT LL N +++ + ILGH ++TT IY++V +SKR Sbjct: 327 HALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKR 372 >gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1] gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1] Length = 292 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ AT L +G +LR IQ +LGH+ TT Y V +++++ Sbjct: 236 HKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQLVK 281 >gi|150005688|ref|YP_001300432.1| integrase [Bacteroides vulgatus ATCC 8482] gi|149934112|gb|ABR40810.1| integrase [Bacteroides vulgatus ATCC 8482] Length = 404 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 350 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 387 >gi|150005630|ref|YP_001300374.1| integrase [Bacteroides vulgatus ATCC 8482] gi|149934054|gb|ABR40752.1| integrase [Bacteroides vulgatus ATCC 8482] Length = 404 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 350 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 387 >gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 363 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H++RHS A LL +G DL SI +LGH+ +TT Y V+ Sbjct: 263 HSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVD 302 >gi|313631658|gb|EFR98891.1| transposition regulatory protein TnpB [Listeria seeligeri FSL N1-067] Length = 225 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH++A LL+NG D+ ++Q +L H+ T +Y Sbjct: 35 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYA 71 >gi|282859387|ref|ZP_06268495.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587872|gb|EFB93069.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 431 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y Sbjct: 392 TYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYA 431 >gi|254883577|ref|ZP_05256287.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254836370|gb|EET16679.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 390 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 28/41 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT RH+ AT LL + L +I+ ILGH+ + TT+IY ++N Sbjct: 320 HTGRHTAATLLLYHDTPLTTIKEILGHTNIRTTEIYADINE 360 >gi|238892790|ref|YP_002917524.1| recombinase involved in phase variation [Klebsiella pneumoniae NTUH-K2044] gi|238545106|dbj|BAH61457.1| recombinase involved in phase variation [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 196 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 26/53 (49%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LRH L G D R IQ LGH + T IYT N++R M ++ Sbjct: 131 IPAYPHMLRHGCGYALADLGRDTRLIQDYLGHRNIRHTVIYTATNTQRFMNVW 183 >gi|86739123|ref|YP_479523.1| phage integrase [Frankia sp. CcI3] gi|86565985|gb|ABD09794.1| phage integrase [Frankia sp. CcI3] Length = 503 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L G DL I+++L H+RL TT IY +V Sbjct: 426 TRVHDLRHTAATMLFRAGVDLNEIRALLRHTRLGTTADIYVDV 468 >gi|299535740|ref|ZP_07049061.1| phage integrase family site specific recombinase [Lysinibacillus fusiformis ZC1] gi|298728940|gb|EFI69494.1| phage integrase family site specific recombinase [Lysinibacillus fusiformis ZC1] Length = 376 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 +S H+LRH+ AT L+ NG ++++Q LGHSR + T+ Sbjct: 313 ISFNDHSLRHTHATTLIENGTPVKTVQKRLGHSRAAVTE 351 >gi|218130592|ref|ZP_03459396.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697] gi|217986936|gb|EEC53267.1| hypothetical protein BACEGG_02181 [Bacteroides eggerthii DSM 20697] Length = 403 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T LS G + SI ++GH+ + TTQ Y V ++ E D+ Sbjct: 338 HASRHSFGTLTLSAGVPIESISKMIGHTNIRTTQGYAKVTDDKISEDMDR 387 >gi|281354995|ref|ZP_06241489.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281317875|gb|EFB01895.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 457 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 26/37 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H+ RH+F T S+G DL I+SI+GHS ++ T+ YT Sbjct: 351 HSFRHTFCTIAASSGKDLSLIRSIVGHSNVAMTEHYT 387 >gi|296163435|ref|ZP_06846188.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886323|gb|EFG66188.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 392 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 25/45 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H LRHS A+H G DLR IQ L H+ + TT IY + R Sbjct: 325 STHWLRHSAASHQADAGTDLRFIQKNLRHASIETTGIYLHAEDDR 369 >gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b] Length = 427 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT L+SNG D++++Q+ LGHS + T IY + + E D+ Sbjct: 369 HELRHTQATLLISNGADIKTVQNRLGHSTAALTMDIYAHAIEQNDREAADE 419 >gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 384 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+ L+S G DL ++Q +L H + TQ Y ++ K + + + + + +K+ Sbjct: 312 HGLRHHFASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAVNLSDSLLEKKE 370 >gi|170761057|ref|YP_001787301.1| phage integrase family site specific recombinase [Clostridium botulinum A3 str. Loch Maree] gi|169408046|gb|ACA56457.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 357 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++AT L+ NG D ++ +LGH+ T + Y +VN Sbjct: 303 HDLRHTYATMLIGNGVDFKTAAKLLGHTIEMTMKTYAHVN 342 >gi|37955774|gb|AAP22612.1| IntI1 [Pseudomonas aeruginosa] Length = 319 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/27 (62%), Positives = 22/27 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSIL 30 T HTLRHSFAT LL +G D+R++Q +L Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDLL 301 >gi|325855399|ref|ZP_08171832.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483836|gb|EGC86790.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 344 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ Sbjct: 305 TFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYS 343 >gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] Length = 347 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKR 48 T H RHS+A +S G D+ ++ +L H +STTQIY + VN K+ Sbjct: 292 TFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNVKK 337 >gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 419 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ MEI Sbjct: 351 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEI 403 >gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 346 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 33/55 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH++ T L S G DL ++++++GH+ TT Y +++ +++ Y S+ Sbjct: 287 HRLRHTYGTELASAGIDLLALRALMGHASPETTARYVHLSLEQLAAEYGAARASL 341 >gi|237710667|ref|ZP_04541148.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229455389|gb|EEO61110.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 272 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 ++HT R SFAT+L G DL SI ++GH+ + TQ Y Sbjct: 218 SSHTARRSFATNLYLRGADLYSISQMMGHASVEMTQNY 255 >gi|220905498|ref|YP_002480810.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869797|gb|ACL50132.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 340 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 23/28 (82%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHS 33 + +RH FA+ +L+NGGDL+++ +LGHS Sbjct: 285 YDIRHLFASTMLANGGDLKAVSKLLGHS 312 >gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 329 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 28/42 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H +R + AT+ L NG D+ +Q LGH+ ++TT+IY + ++ Sbjct: 277 HVMRATAATNALDNGADIAKVQEWLGHANIATTRIYDHRKTR 318 >gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34] gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34] Length = 480 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RHS AT+LL +G DL + +GHS ++TTQ Y Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRY 465 >gi|283786566|ref|YP_003366431.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168] gi|282950020|emb|CBG89649.1| fimbrial regulatory protein FimB [Citrobacter rodentium ICC168] Length = 201 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 25/51 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D Sbjct: 141 HMLRHSCGFALANRGVDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDDV 191 >gi|145297530|ref|YP_001140371.1| phage integrase family protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850302|gb|ABO88623.1| phage integrase family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 408 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 30/44 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RHS A ++S+GG L +Q+ LGHS ++Q Y ++++ R+ Sbjct: 333 HTCRHSVAALIVSSGGTLYDVQAQLGHSSSQSSQRYAHLHASRL 376 >gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 359 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH A+ L G DL I SI GH L + Y +V +K ++E ++H Sbjct: 303 HDLRHEAASRLREEGLDLMEIASITGHKTLQMLKRYVHVKAKDVVEKRQKSH 354 >gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217] gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217] Length = 335 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHS A +L D+R + LGH+ + TT+ Y V++ + +E + P Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIPPEL 311 Query: 62 QKDK 65 ++ K Sbjct: 312 RRGK 315 >gi|149916559|ref|ZP_01905074.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809533|gb|EDM69392.1| Integrase [Roseobacter sp. AzwK-3b] Length = 189 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++H+ R SF T+L + +R + + GHS + TTQ Y +VN K+M E + Sbjct: 136 ASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQMSEAVE 187 >gi|94499639|ref|ZP_01306176.1| Integrase [Oceanobacter sp. RED65] gi|94428393|gb|EAT13366.1| Integrase [Oceanobacter sp. RED65] Length = 331 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ + NGG L +Q ILGH + T Y ++ Sbjct: 274 HVLRHTFASWYMINGGRLEVLQKILGHGTILMTMKYAHL 312 >gi|193065925|ref|ZP_03046985.1| resolvase [Escherichia coli E22] gi|192926429|gb|EDV81063.1| resolvase [Escherichia coli E22] Length = 236 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TLRHSFA HL N + +Q+ +GH R +T++Y V Sbjct: 172 TLRHSFAMHLYFNHVPPKVVQAYMGHERYESTEVYLKV 209 >gi|329954882|ref|ZP_08295899.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328526986|gb|EGF53997.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 414 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 360 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 397 >gi|188579610|ref|YP_001923055.1| integrase family protein [Methylobacterium populi BJ001] gi|179343108|gb|ACB78520.1| integrase family protein [Methylobacterium populi BJ001] Length = 229 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 LRH+F H L +G L +Q LGH+ LSTT IY +V EI Sbjct: 180 LRHAFGVHALRSGVPLTLLQRWLGHASLSTTAIYADVLGAEEREI 224 >gi|111026170|ref|YP_708453.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110825013|gb|ABH00295.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 127 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/38 (55%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ A LL G DL +I LGH R TTQIY Sbjct: 52 TPHVLRHTAAMRLLHAGVDLTTIALRLGHERSDTTQIY 89 >gi|289751271|ref|ZP_06510649.1| integrase [Mycobacterium tuberculosis T92] gi|289691858|gb|EFD59287.1| integrase [Mycobacterium tuberculosis T92] Length = 166 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH +AT +LR++Q +LGH+ + TT+ YT + Sbjct: 112 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTAL 153 >gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 457 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH++AT +L G D+ +++ +LGHS ++ T+ Y ++ Sbjct: 402 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHL 440 >gi|317967959|ref|ZP_07969349.1| integrase/recombinase [Synechococcus sp. CB0205] Length = 319 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+ ATH + G D+ ++Q+ LGHS +TT Y N Sbjct: 270 HKLRHTHATHAIRRGVDVFTLQATLGHSSSATTSGYVAAN 309 >gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 411 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHVARHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|10956075|ref|NP_052162.1| DNA invertase-like protein [Chlorobium limicola] gi|1688244|gb|AAB36935.1| DNA invertase homolog [Chlorobium limicola] Length = 182 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 23/48 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T IYT N R ++ Sbjct: 134 HMLRHACGFALADQGADTRLIQDYLGHRNIQHTVIYTAANPARFERLW 181 >gi|288933663|ref|YP_003437722.1| integrase [Klebsiella variicola At-22] gi|288888392|gb|ADC56710.1| integrase family protein [Klebsiella variicola At-22] Length = 201 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D T Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDNT 191 >gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 409 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +AH+LRH+ AT L G L +Q +LGH+ TT +Y ++ + + Sbjct: 311 SAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 356 >gi|160890395|ref|ZP_02071398.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492] gi|156860127|gb|EDO53558.1| hypothetical protein BACUNI_02836 [Bacteroides uniformis ATCC 8492] Length = 382 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 328 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365 >gi|30908732|gb|AAP37598.1| IntI [uncultured bacterium] Length = 160 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQ 27 T+ HTLRHSFATH+L G D+R++Q Sbjct: 135 PTSPHTLRHSFATHVLQMGYDIRTVQ 160 >gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025957|dbj|BAB52556.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 232 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 ++++LRH+FA LL G D+++I +LGH L T +Y Sbjct: 168 SSYSLRHAFAMRLLRRGVDVKAIGDLLGHRSLEATCVY 205 >gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 330 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 26/44 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHS A LL +G D I LGH + TTQIY + + + Sbjct: 255 TPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADMR 298 >gi|319901506|ref|YP_004161234.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416537|gb|ADV43648.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 371 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ + +FAT + G D+R+IQSI+ H ++TTQ Y V Sbjct: 313 TFHSYQRTFATLQAATGTDIRTIQSIMAHKSITTTQRYIKV 353 >gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] Length = 331 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT L+ G L ++ ++GH+ + TT+IY ++ YD Sbjct: 278 HLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIYAKNGVGKIKYEYD 326 >gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium 6_1_63FAA] Length = 380 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 + TAHT RH+FAT + G + +++Q ILGH L T +Y +V Sbjct: 319 LPFTAHTFRHTFATRAIECGMNPKTLQKILGHGTLQMTMDLYCHV 363 >gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 391 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG ++ IQ LGHS STT IY +++ Sbjct: 329 HDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369 >gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71] gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71] Length = 440 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHS T + G + I + LGHS+LSTTQ Y ++ Sbjct: 366 TNHSLRHSLGTIMAVQGAEAAQIMAALGHSQLSTTQRYIHI 406 >gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 337 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +S + H +RHS ATHL++ ++ +++ LGH+ + TTQ+Y N + Sbjct: 254 LSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYLTSNPE 300 >gi|270296756|ref|ZP_06202955.1| integrase [Bacteroides sp. D20] gi|270272743|gb|EFA18606.1| integrase [Bacteroides sp. D20] Length = 382 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G ++ I LGHS L+TTQIY Sbjct: 328 TTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIY 365 >gi|229136651|ref|ZP_04265326.1| Integrase-recombinase [Bacillus cereus BDRD-ST196] gi|228646811|gb|EEL02971.1| Integrase-recombinase [Bacillus cereus BDRD-ST196] Length = 390 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGHADLYHLMQTLGHEDIQTTKIYLEKHMKR 377 >gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424] gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 329 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRH+ T L G +LR +Q +LGH+ TT +Y ++ + Sbjct: 271 TTHSLRHTAGTLALRTGAELRQVQDMLGHADPRTTALYAHIADR 314 >gi|296164063|ref|ZP_06846686.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900611|gb|EFG79994.1| XerC/XerD family integrase/recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 310 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH++ ++++ G + + +LGH+ +S++QIY + ++ R+ D Sbjct: 249 HQLRHAYGSNVVDAGAGIDVVADLLGHAAVSSSQIYLHPDASRLRAAVD 297 >gi|257438656|ref|ZP_05614411.1| integrase XerD family protein [Faecalibacterium prausnitzii A2-165] gi|257198885|gb|EEU97169.1| integrase XerD family protein [Faecalibacterium prausnitzii A2-165] Length = 104 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IY +++ Sbjct: 43 HDLRHSCASLLYANGVSLKEIQEWLGHSGISTTSNIYIHLD 83 >gi|215428049|ref|ZP_03425968.1| integrase [Mycobacterium tuberculosis T92] Length = 167 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH +AT +LR++Q +LGH+ + TT+ YT + Sbjct: 113 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTAL 154 >gi|198277086|ref|ZP_03209617.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135] gi|270296266|ref|ZP_06202466.1| conserved hypothetical protein [Bacteroides sp. D20] gi|198269584|gb|EDY93854.1| hypothetical protein BACPLE_03294 [Bacteroides plebeius DSM 17135] gi|270273670|gb|EFA19532.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 268 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH FA + L D+ + ++GH + TT+IY +S EI D+ Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDKV 265 >gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1] gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 334 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS A+ L NG L I +LGH +LS T+ Y+++ + ++ ++ Sbjct: 279 HDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATDHKTKLINR 328 >gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 330 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHS A LL +G D I LGH + TTQIY + + RM E Sbjct: 255 TPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHAD-MRMKE 301 >gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] Length = 306 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AHT RH+FA L G D+ ++Q +L HS L T+ Y ++ + E D+ +P Sbjct: 246 SAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNP 300 >gi|67077939|ref|YP_245559.1| integrase-recombinase [Bacillus cereus E33L] gi|66970245|gb|AAY60221.1| integrase-recombinase [Bacillus cereus E33L] Length = 390 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 331 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHEDIQTTKIYLEKHMKR 377 >gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHP 58 H LRHS AT L+ G +++IQ LGHS+ TT +Y +V S+ E +D+ P Sbjct: 344 HDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTADVYAHVTKKVSRETAEKFDKFAP 400 >gi|311064154|ref|YP_003970879.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866473|gb|ADP35842.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum PRL2010] Length = 238 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H+LRH++A+ ++ G D +++Q LGHS S T YT + +R+ ++ Sbjct: 176 TIHSLRHTYASFAIAQGADAKTLQMQLGHSSPSITLNTYTALWPERLDDV 225 >gi|310287306|ref|YP_003938564.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|309251242|gb|ADO52990.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] Length = 239 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H+LRH++A+ ++ G D +++Q LGHS S T YT + +R+ ++ Sbjct: 177 TIHSLRHTYASFAIAQGADAKTLQMQLGHSSPSITLNTYTALWPERLDDV 226 >gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07] gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum PSI07] Length = 566 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560 >gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957] gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum CFBP2957] Length = 568 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 512 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 562 >gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum CMR15] Length = 566 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560 >gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] Length = 553 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 497 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 547 >gi|189462153|ref|ZP_03010938.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136] gi|189431126|gb|EDV00111.1| hypothetical protein BACCOP_02835 [Bacteroides coprocola DSM 17136] Length = 386 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH FA LS G + S+ ILGH+ + TTQIY + Sbjct: 343 HCSRHGFAILALSKGMPIESVSRILGHTNIKTTQIYAS 380 >gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 566 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560 >gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551] gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551] Length = 566 Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 510 SPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 560 >gi|301312507|ref|ZP_07218412.1| integrase [Bacteroides sp. 20_3] gi|300829507|gb|EFK60172.1| integrase [Bacteroides sp. 20_3] Length = 80 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 12 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 52 >gi|266623937|ref|ZP_06116872.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288864249|gb|EFC96547.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 311 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 25/37 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T H LRH+ A+ L+SN D RS+ +LGHS STT Sbjct: 246 NATQHDLRHTAASILISNNMDPRSVAGVLGHSNASTT 282 >gi|170737066|ref|YP_001778326.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169819254|gb|ACA93836.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 563 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT IY + + + +DQ Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHASVSTTSIYLHSDEVQRARQFDQ 556 >gi|116329653|ref|YP_799372.1| XerD related protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116122546|gb|ABJ80439.1| XerD related protein (integrase family) [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 298 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T TLRHS A HL+++G L ++ LGH L++T+ Y V Sbjct: 231 TVFTLRHSRALHLIADGSSLNHVKDFLGHKTLASTESYLPV 271 >gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 405 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + L+NG + ++ ++GH+ + TTQIY V Sbjct: 345 TFHIARHTFATTVTLNNGVPIETVAKMMGHTSIKTTQIYAKV 386 >gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 405 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + + H RH+FAT+ L+NG + + +L HS + TQIY V S+ + + D Sbjct: 348 FTLSFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQIYAKVISEELDKAVD 401 >gi|288925568|ref|ZP_06419500.1| integrase [Prevotella buccae D17] gi|288337506|gb|EFC75860.1| integrase [Prevotella buccae D17] Length = 411 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384 >gi|260435817|ref|ZP_05789787.1| site-specific recombinase, phage integrase family [Synechococcus sp. WH 8109] gi|260413691|gb|EEX06987.1| site-specific recombinase, phage integrase family [Synechococcus sp. WH 8109] Length = 318 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS ATH + G D+ ++Q+ LGHS +TT Y N + Sbjct: 269 HQLRHSHATHAVQRGVDVFTLQATLGHSSSATTGHYVASNPR 310 >gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4] Length = 306 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AHT RH+FA L G D+ ++Q +L HS L T+ Y ++ + E D+ +P Sbjct: 246 SAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNP 300 >gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 412 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHP 58 H LRHS AT L+ G +++IQ LGHS+ TT +Y +V S+ E +D+ P Sbjct: 343 HDLRHSSATLLIEAGASMKAIQQRLGHSKHQTTADVYAHVTKKVSRETAEKFDKFAP 399 >gi|221197237|ref|ZP_03570284.1| tyrosine recombinase [Burkholderia multivorans CGD2M] gi|221203909|ref|ZP_03576927.1| tyrosine recombinase [Burkholderia multivorans CGD2] gi|221176075|gb|EEE08504.1| tyrosine recombinase [Burkholderia multivorans CGD2] gi|221183791|gb|EEE16191.1| tyrosine recombinase [Burkholderia multivorans CGD2M] Length = 109 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 30/45 (66%) Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKKN 67 +R IQ++LGH+ + TTQ+YT V+ + +I+ THP+ + +N Sbjct: 29 VRYIQAMLGHADIKTTQVYTRVSIHALKDIHTATHPARLARTVRN 73 >gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 393 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+ + GG L I +LGHS+ +TT Y +V K E+ + Sbjct: 325 HDLRHSFASVSVGLGGSLPVIGRVLGHSQPATTARYAHVADKVAAELVE 373 >gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909] gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909] Length = 291 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LR +F T LL G D+ +++ + GHS +STT Y Sbjct: 236 TPHDLRRTFITQLLEQGADINTVRQLAGHSDISTTARY 273 >gi|224436735|ref|ZP_03657735.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 196 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFA+ + D+ Q LGH+ L+ TQIY ++N Sbjct: 146 HLLRHSFASFVYRESRDILLTQKALGHASLNNTQIYVHMNE 186 >gi|134288322|ref|YP_001110485.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132972|gb|ABO59682.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 576 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L +G +L +++ L H+ +STT IY Sbjct: 519 SPHWMRHTHATHALGSGAELTAVRDNLRHASVSTTSIY 556 >gi|25011273|ref|NP_735668.1| hypothetical protein gbs1224 [Streptococcus agalactiae NEM316] gi|76799532|ref|ZP_00781664.1| integrase [Streptococcus agalactiae 18RS21] gi|23095697|emb|CAD46883.1| Unknown [Streptococcus agalactiae NEM316] gi|76585116|gb|EAO61742.1| integrase [Streptococcus agalactiae 18RS21] Length = 358 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH++ +HL+S G DL +I I+GH L+ T Sbjct: 294 HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 326 >gi|302538708|ref|ZP_07291050.1| predicted protein [Streptomyces sp. C] gi|302447603|gb|EFL19419.1| predicted protein [Streptomyces sp. C] Length = 354 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LR + ATH G DL ++Q +LGH +++T Y + K Sbjct: 292 TPHALRRACATHQYERGMDLIAVQQLLGHRHIASTMAYVKPSQK 335 >gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] Length = 383 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHSFA+ L G DL I +LGHS + TT Y ++ + + Sbjct: 322 HDLRHSFASDALEMGADLTMIGHMLGHSDIKTTARYAHLKRENV 365 >gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 386 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ A+ +S G D+ +++ +LGH +++T++Y V ++ +E Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIE 376 >gi|266625264|ref|ZP_06118199.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288862840|gb|EFC95138.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 67 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH FA + L D+ + ++GH + TT+IY S +I DQ Sbjct: 14 HSFRHRFAKNFLEKFSDIALLADLMGHESIETTRIYLRRTSSEQQQIVDQV 64 >gi|229012430|ref|ZP_04169605.1| Integrase-recombinase [Bacillus mycoides DSM 2048] gi|228748789|gb|EEL98639.1| Integrase-recombinase [Bacillus mycoides DSM 2048] Length = 98 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 37 VTAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 83 >gi|188591811|ref|YP_001796410.1| Phage integrase [Cupriavidus taiwanensis] gi|170939206|emb|CAP64249.1| Phage integrase [Cupriavidus taiwanensis LMG 19424] Length = 390 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 25/45 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H LRHS A+H G D+R IQ L H+ + TT IY + R Sbjct: 325 STHWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR 369 >gi|153807019|ref|ZP_01959687.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185] gi|149130139|gb|EDM21349.1| hypothetical protein BACCAC_01296 [Bacteroides caccae ATCC 43185] Length = 307 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT + + D +++ ILGHS ++TT ++ N+N K+ Sbjct: 249 HGLRHTFATRCIESQCDYKTVSVILGHSNVATTLNLYVHPNLNQKK 294 >gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein [Brachyspira pilosicoli 95/1000] gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein [Brachyspira pilosicoli 95/1000] Length = 392 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKRMMEIYDQTH 57 + T H+LR FAT + +G D+ I +LGH ++TT IY + M++ Q H Sbjct: 275 IKVTCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIYVMAS---MIKEAMQNH 331 Query: 58 PSITQKDKKN 67 P ++K+N Sbjct: 332 PFAKNREKQN 341 >gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 411 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384 >gi|207722744|ref|YP_002253179.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206587926|emb|CAQ18507.1| putative integrase/recombinase protein [Ralstonia solanacearum MolK2] Length = 671 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEI 52 + H +RHS A+H ++ G + +Q LGH L TT +Y T+ + RM E+ Sbjct: 615 STHWMRHSHASHAIAAGTPVEIMQQNLGHRSLDTTTVYVTSEEAIRMKEL 664 >gi|307152465|ref|YP_003887849.1| integrase family protein [Cyanothece sp. PCC 7822] gi|307153116|ref|YP_003888500.1| integrase family protein [Cyanothece sp. PCC 7822] gi|307154318|ref|YP_003889702.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306982693|gb|ADN14574.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306983344|gb|ADN15225.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306984546|gb|ADN16427.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 187 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+ R S T+L+SNG DLR++Q+I GHS + Y + N R Sbjct: 135 HSGRRSLITNLISNGVDLRTVQAITGHSSIQNVIRYADSNPHRC 178 >gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 411 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 4/58 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHPS 59 H LRHS AT L+ G +++IQ LGHS+ TT IY +V S+ E +D+ P+ Sbjct: 344 HDLRHSSATLLIEAGAPMKAIQKRLGHSKHQTTADIYAHVTKKVSRDTAEKFDKFAPN 401 >gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925] Length = 274 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH + +L G D+ +I I GH ++TT+IYT + ++ I Sbjct: 223 AHNFRHLYCKNLADRGIDISTIADIAGHQNINTTRIYTRKTKEELLNI 270 >gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815] gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815] Length = 343 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 27/55 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRH+ A LL G D +I LGH+ L+TT Y + + Q P I Sbjct: 266 HSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320 >gi|333030040|ref|ZP_08458101.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|332740637|gb|EGJ71119.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 410 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+F+T + LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 342 TFHMARHTFSTTITLSQGVPIESVSKMLGHTNIRTTQIYARITNEKV 388 >gi|331001164|ref|ZP_08324792.1| conserved domain protein [Parasutterella excrementihominis YIT 11859] gi|329569252|gb|EGG51041.1| conserved domain protein [Parasutterella excrementihominis YIT 11859] Length = 84 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR +FAT +L+NG D+ +Q +GH+ ++TT +Y Sbjct: 31 HDLRRTFATTMLANGCDVFVLQRAMGHASVNTTSMY 66 >gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612] gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612] Length = 359 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 15/62 (24%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FAT+ + G D++ I +LGH+++ TT M+IY HPS T DK Sbjct: 280 HDLRHTFATNAKACGIDIQLISEMLGHAQIKTT-----------MDIY--VHPSDT--DK 324 Query: 66 KN 67 +N Sbjct: 325 QN 326 >gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 411 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384 >gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4] gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 371 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQS++ H ++TTQ Y V Sbjct: 313 TFHSYRRTFATLQGAAGTDIRTIQSMMAHKSITTTQRYMKV 353 >gi|258651476|ref|YP_003200632.1| integrase [Nakamurella multipartita DSM 44233] gi|258652719|ref|YP_003201875.1| integrase [Nakamurella multipartita DSM 44233] gi|258554701|gb|ACV77643.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258555944|gb|ACV78886.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 617 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ AT ++ G L +I ++LGH +S T +Y + + + + Y Sbjct: 464 HQLRHTLATQAINRGMSLEAIAALLGHKTMSMTLVYARIADRTVADQY 511 >gi|167751073|ref|ZP_02423200.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702] gi|167655991|gb|EDS00121.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702] Length = 244 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 + H LRH+F T N +L+ IQ I+GH+ ++TT IY + ME + Sbjct: 184 SCHHLRHTFCTRFCENETNLKIIQEIMGHADITTTMDIYNEATKDKKMESF 234 >gi|313157871|gb|EFR57277.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 394 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 26/43 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 M T + RH+FAT L +G + I LGHS LSTTQIY + Sbjct: 348 MPLTTYVARHTFATVLKRSGVSVALISESLGHSDLSTTQIYLD 390 >gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 274 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH + +L G D+ +I I GH ++TT+IYT + ++ I Sbjct: 223 AHNFRHLYCKNLADRGIDISTIADIAGHQNINTTRIYTRKTKEELLNI 270 >gi|326382372|ref|ZP_08204064.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199102|gb|EGD56284.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 368 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ R S+ATHLL + D R +Q +GH STT IY Sbjct: 300 HSFRRSYATHLLEDDWDPRFVQDQMGHEYASTTGIY 335 >gi|300713231|ref|YP_003739270.1| Site-specific recombinase [Erwinia billingiae Eb661] gi|299060302|emb|CAX53552.1| Site-specific recombinase [Erwinia billingiae Eb661] Length = 263 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++ T HT RHS+ H+L + L+ IQ++ GH + ++YT V Sbjct: 190 IAVTPHTFRHSWIMHMLYHRQPLKVIQALAGHKDARSVEVYTRV 233 >gi|229496267|ref|ZP_04389987.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316845|gb|EEN82758.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 416 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ +AH RH+FAT + L G + ++ +LGHS + TT+ Y V K++ + +++ Sbjct: 349 ITLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAYVTPKKLFDEFER 404 >gi|225174939|ref|ZP_03728936.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169579|gb|EEG78376.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 191 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H+L+HS A HL +G D++ +Q LGH +++T +Y +++ +Y Sbjct: 134 HSLKHSVAVHLADSGLDVKELQHYLGHKNVNSTLVYFQFTTRQQDNMY 181 >gi|224282976|ref|ZP_03646298.1| phage integrase [Bifidobacterium bifidum NCIMB 41171] gi|313140132|ref|ZP_07802325.1| phage integrase [Bifidobacterium bifidum NCIMB 41171] gi|313132642|gb|EFR50259.1| phage integrase [Bifidobacterium bifidum NCIMB 41171] Length = 406 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ RH AT L + G +I+GH+ + TT +YT+ +R+ E D P + Sbjct: 348 YSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWRERRLAETLDAALPDL 402 >gi|218129653|ref|ZP_03458457.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697] gi|217988383|gb|EEC54706.1| hypothetical protein BACEGG_01230 [Bacteroides eggerthii DSM 20697] Length = 382 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G + I LGHS LSTTQ+Y Sbjct: 328 TTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365 >gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC 33277] gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC 33277] Length = 411 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + Sbjct: 343 TWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKI 384 >gi|170696572|ref|ZP_02887694.1| integrase family protein [Burkholderia graminis C4D1M] gi|170138525|gb|EDT06731.1| integrase family protein [Burkholderia graminis C4D1M] Length = 389 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS A+H G DLR IQ + H+ + TT IY + DQ H ++ Sbjct: 328 STHWLRHSAASHQADAGTDLRFIQKNMRHASIQTTGIYLHAED-------DQRHAETVRE 380 Query: 64 D 64 D Sbjct: 381 D 381 >gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217] gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217] Length = 313 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S + H LRHS A +L D+R + LGH+ + TT+ Y V++ + +E + P Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIP 308 >gi|150019248|ref|YP_001311502.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149905713|gb|ABR36546.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 199 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HT++H+ A HL D++ +Q LGH ++ T+IY +K+ ++Y Sbjct: 142 HTIKHTTAVHLAECDMDIKELQWWLGHKSVTNTEIYFQFTTKQQEKMY 189 >gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 376 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQT 56 H LRH AT L S G +++S+ + +GHS+L TT IY N K++ ++ D T Sbjct: 311 HDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIYMQPINEVDKQVAKVLDNT 364 >gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021] gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021] Length = 339 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 20/39 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH FAT L G + +LGHS + T Q Y Sbjct: 267 TLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQAY 305 >gi|330399609|ref|YP_004030707.1| hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454] gi|312170346|emb|CBW77385.1| Hypothetical protein RBRH_03374 [Burkholderia rhizoxinica HKI 454] Length = 483 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH LRH+ +H G DLR+++ LGH L+TT +Y Sbjct: 411 SAHWLRHTAGSHQADGGLDLRTVRDNLGHVSLTTTSLY 448 >gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972] gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972] Length = 347 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+FA+ + GG++ +Q ILGHS + T Y + + +++ Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYAHFSPDHLIQ 335 >gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 291 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH LRH+ A+H L G + +Q+ LGH+ ++TT Y Sbjct: 239 SAHWLRHAHASHALDRGAPIHLVQATLGHASVATTGRY 276 >gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 324 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 +S H +R++FA L NGGDL ++ ILGHS + T+ Sbjct: 261 LSIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299 >gi|212635877|ref|YP_002312402.1| helix-hairpin-helix DNA-binding, class 1 [Shewanella piezotolerans WP3] gi|212557361|gb|ACJ29815.1| Helix-hairpin-helix DNA-binding, class 1 [Shewanella piezotolerans WP3] Length = 174 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TAHT RHS AT +L G D+R + +L + TTQ Y Sbjct: 118 EVTAHTFRHSIATSVLKGGADIRILPEMLDFRVIKTTQTY 157 >gi|298482012|ref|ZP_07000201.1| transposase [Bacteroides sp. D22] gi|298271876|gb|EFI13448.1| transposase [Bacteroides sp. D22] Length = 407 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 345 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387 >gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 410 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+AT + L+NG + ++ +LGHS + TQ Y V Sbjct: 349 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 390 >gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891] gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891] Length = 347 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+FA+ + GG++ +Q ILGHS + T Y++ + +++ Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYSHFSPDHLIQ 335 >gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein [Methylophaga thiooxidans DMS010] gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein [Methylophaga thiooxydans DMS010] Length = 409 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH FA+ L+S G DL S++ +LGHS + T Y ++ Sbjct: 356 HDLRHHFASRLVSAGIDLNSVRELLGHSDIKMTLRYAHL 394 >gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 394 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH++AT +L G D+ +++ +LGHS ++ T+ Y ++ Sbjct: 339 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHL 377 >gi|317477513|ref|ZP_07936738.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906314|gb|EFV28043.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 382 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G + I LGHS LSTTQ+Y Sbjct: 328 TTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365 >gi|300214847|gb|ADJ79263.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 167 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ + +I D+ Sbjct: 108 TTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDE 160 >gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 411 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ MEI Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEI 395 >gi|297566460|ref|YP_003685432.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296850909|gb|ADH63924.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 353 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH LRH+ T DL + +LGHS ++T+ IY ++ + + E+ D+ Sbjct: 300 AHLLRHTAGTRFYQVSRDLHATARLLGHSNINTSAIYAKMDLQGLFEVVDK 350 >gi|56475683|ref|YP_157272.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|58616519|ref|YP_195648.1| putative integrase [Azoarcus sp. EbN1] gi|58616531|ref|YP_195660.1| putative integrase [Azoarcus sp. EbN1] gi|56311726|emb|CAI06371.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56315981|emb|CAI10624.1| putative integrase [Aromatoleum aromaticum EbN1] gi|56315993|emb|CAI10636.1| putative integrase [Aromatoleum aromaticum EbN1] Length = 332 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 28/55 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+ A LL G D I LGH + TTQIY + N + + +T P Sbjct: 257 TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIYLDANLEMKEQALAKTAP 311 >gi|329957039|ref|ZP_08297606.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328523307|gb|EGF50406.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 382 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFA+ L +G + I LGHS LSTTQ+Y Sbjct: 328 TTYVARHSFASVLKKSGVSIALISEALGHSDLSTTQVY 365 >gi|260588402|ref|ZP_05854315.1| site-specific recombinase, phage integrase family [Blautia hansenii DSM 20583] gi|260541276|gb|EEX21845.1| site-specific recombinase, phage integrase family [Blautia hansenii DSM 20583] Length = 337 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LR +F T++ GD+ +LGHS +TT+ Y +VN + M E+ Sbjct: 279 SPHELRRTFGTNVYRMKGDIYLTSELLGHSSPTTTKRYASVNKQEMKEV 327 >gi|313158322|gb|EFR57724.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5] Length = 268 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY +S EI D+ Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSAEQQEIVDK 264 >gi|291166299|gb|EFE28345.1| site-specific recombinase, phage integrase family [Filifactor alocis ATCC 35896] Length = 432 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH+F ++LLS G + +Q +LGH+ ++TT Sbjct: 374 HTLRHTFTSNLLSYGAAPKEVQELLGHADVTTT 406 >gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 410 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMMEIYDQTHP 58 H LRHS AT L+ G +++IQ LGHS+ TT IY ++ S+ E +D+ P Sbjct: 342 HDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHITKKVSRETAEKFDKFAP 398 >gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] Length = 395 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+ +++ +LGHS + TTQIYT++ ++ +Q Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRAAIEQ 329 >gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 386 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ A+ +S G D+ +++ +LGH +++T++Y V ++ +E Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIE 376 >gi|226349711|ref|YP_002776825.1| putative transposase for insertion sequence element [Rhodococcus opacus B4] gi|226245626|dbj|BAH55973.1| putative transposase for insertion sequence element [Rhodococcus opacus B4] Length = 535 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + +AH RH+ T L G +++I +ILGH + + IY+ ++ + Y+ Sbjct: 366 TVSAHRFRHTLGTQLAEGGARIQTIMAILGHRSATMSMIYSRISDPEIRRQYE 418 >gi|167625964|ref|YP_001676258.1| integrase family protein [Shewanella halifaxensis HAW-EB4] gi|167355986|gb|ABZ78599.1| integrase family protein [Shewanella halifaxensis HAW-EB4] Length = 313 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ + H LR +F T LL+ DL + + GH+ ++TTQIY + M E +Q Sbjct: 240 ITISPHDLRRTFITELLNQKVDLSTASKLAGHANVTTTQIYDKRDESVMREAINQ 294 >gi|120401481|ref|YP_951310.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120404557|ref|YP_954386.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406443|ref|YP_956272.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954299|gb|ABM11304.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119957375|gb|ABM14380.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959261|gb|ABM16266.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 647 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H LRH++AT L + G L+++ S+LGH T Y + S + YD+ Sbjct: 480 LMVTPHQLRHTWATELANAGMSLQALMSLLGHVTPQMTIRYATLASPTLRAAYDE 534 >gi|313158018|gb|EFR57424.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 405 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH++AT + L NG L ++ +LGH R++TTQ Y V Sbjct: 341 TFHVARHTYATTICLMNGVSLETLSKMLGHKRITTTQTYAKV 382 >gi|237719899|ref|ZP_04550380.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229450451|gb|EEO56242.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 337 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS----KRMMEIYDQTHPSI 60 AH RH+ A+H L NG ++ I +LGH + TT Y ++ + K + + +++ ++ Sbjct: 269 AHQFRHAKASHWLENGMNIAQISYLLGHECIQTTMAYLDITTEQEEKALETLENESQKNM 328 Query: 61 TQKDKKN 67 +K K N Sbjct: 329 AKKWKNN 335 >gi|167754018|ref|ZP_02426145.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216] gi|167658643|gb|EDS02773.1| hypothetical protein ALIPUT_02306 [Alistipes putredinis DSM 17216] Length = 401 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T + RH+FAT L +G ++ I LGHS LSTTQIY + Sbjct: 344 IELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 386 >gi|161522815|ref|YP_001585744.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160346368|gb|ABX19452.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 399 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S +AH +RH+ +H+ DLR ++ LGH+ L+TT +Y Sbjct: 339 SASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVY 378 >gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 330 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 26/44 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHS A LL +G D I LGH + TTQIY + + + Sbjct: 255 TPHTLRHSTAMELLHHGVDQSVIALWLGHESVETTQIYIHADMR 298 >gi|224824075|ref|ZP_03697183.1| integrase family protein [Lutiella nitroferrum 2002] gi|224603494|gb|EEG09669.1| integrase family protein [Lutiella nitroferrum 2002] Length = 204 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + AT + +LR++Q +LGH++L +T Y + +EI +QT Sbjct: 152 HTMRRTKATLIYKRTKNLRAVQLLLGHAKLESTVRYLGIEVDDALEISEQTE 203 >gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159] gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159] Length = 334 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H+ RH AT L+ ++Q+ILGH+ TT+IY ++ ++ E Y Sbjct: 266 AVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEY 317 >gi|210613945|ref|ZP_03289982.1| hypothetical protein CLONEX_02195 [Clostridium nexile DSM 1787] gi|210150905|gb|EEA81913.1| hypothetical protein CLONEX_02195 [Clostridium nexile DSM 1787] Length = 372 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 25/54 (46%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H LRH FA G L I LGH + TT Y N+ + +ME D Sbjct: 303 IKVTPHMLRHYFANTRRKAGWKLELISQALGHRHIETTMKYLNITEEELMEASD 356 >gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 287 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T+HTLRH+F +HL G ++ +LGHS TT+ Y V Sbjct: 230 SVTSHTLRHAFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRV 272 >gi|332882853|ref|ZP_08450462.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679173|gb|EGJ52161.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 409 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+F + + L G + +I +LGH+ L+TTQ+Y V K++ E D Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLATTQLYARVTPKKLFEDMD 396 >gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275] gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275] Length = 376 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H LRH++AT L+ G +++ + +LGH+ + TT IY N Sbjct: 320 HNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVN 358 >gi|167753763|ref|ZP_02425890.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216] gi|167658388|gb|EDS02518.1| hypothetical protein ALIPUT_02047 [Alistipes putredinis DSM 17216] Length = 401 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T + RH+FAT L +G ++ I LGHS LSTTQIY + Sbjct: 344 IELTTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 386 >gi|150010186|ref|YP_001304929.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149938610|gb|ABR45307.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 310 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 480 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RHS AT+LL G DL + +GHS ++TTQ Y Sbjct: 427 VSPHDFRHSVATNLLRAGFDLLLVSKFMGHSSITTTQRY 465 >gi|153938928|ref|YP_001392711.1| phage integrase family site specific recombinase [Clostridium botulinum F str. Langeland] gi|152934824|gb|ABS40322.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|295320692|gb|ADG01070.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 199 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTL+H+ A HL + D++ +Q LGH +S T+I+ +K+ ++Y Sbjct: 142 HTLKHTTAVHLAESEMDIKELQWWLGHKSVSNTEIHFQFTTKQQEKMY 189 >gi|77412574|ref|ZP_00788864.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] gi|77161376|gb|EAO72397.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] Length = 263 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH++ +HL+S G DL +I I+GH L+ T Sbjct: 206 HSLRHTYVSHLISEGIDLFAISKIVGHKDLNIT 238 >gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 400 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 332 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 378 >gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606] gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606] Length = 437 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 369 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 415 >gi|291087774|ref|ZP_06347445.2| site-specific DNA tyrosine recombinase, XerD [Clostridium sp. M62/1] gi|291073872|gb|EFE11236.1| site-specific DNA tyrosine recombinase, XerD [Clostridium sp. M62/1] Length = 286 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH FA N D+ + ILGHS + TT+IYT+++ Sbjct: 232 HNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSIS 271 >gi|218134770|ref|ZP_03463574.1| hypothetical protein BACPEC_02673 [Bacteroides pectinophilus ATCC 43243] gi|217990155|gb|EEC56166.1| hypothetical protein BACPEC_02673 [Bacteroides pectinophilus ATCC 43243] Length = 85 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LL+NG + +Q +LGHS +STT Sbjct: 27 HQLRHTYTSNLLANGAAPKDVQELLGHSDVSTT 59 >gi|331000501|ref|ZP_08324174.1| conserved domain protein [Parasutterella excrementihominis YIT 11859] gi|329571489|gb|EGG53173.1| conserved domain protein [Parasutterella excrementihominis YIT 11859] Length = 84 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR +FAT +L+NG D+ +Q +GH+ ++TT +Y Sbjct: 31 HDLRRTFATTMLANGCDVFVLQRAMGHASVNTTSMY 66 >gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 361 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58 H +RH+FAT L+ G DL +Q +LGH TQ Y + + + + E + D+ P Sbjct: 284 HDMRHTFATRLVQRGVDLYKVQRLLGHKTNLMTQRYAHHSPESLREGVKVLDECQP 339 >gi|242348058|ref|YP_002995619.1| phage integrase family protein [Aeromonas hydrophila] gi|242348136|ref|YP_002995696.1| phage integrase family protein [Escherichia coli] gi|224831725|gb|ACN66857.1| phage integrase family protein [Escherichia coli] gi|224831877|gb|ACN67008.1| phage integrase family protein [Aeromonas hydrophila] Length = 334 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR +FA+ +L NG D+ +++ +GH+ ++TTQ Y +R+ + Sbjct: 282 HDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQ 327 >gi|229489816|ref|ZP_04383673.1| integrase/recombinase [Rhodococcus erythropolis SK121] gi|229323326|gb|EEN89090.1| integrase/recombinase [Rhodococcus erythropolis SK121] Length = 360 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 26/45 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S H LRHS+ THL+ R +Q GH+ STT IYT V++ Sbjct: 295 SLDLHCLRHSYITHLIEFDYPERFVQEQAGHAFASTTAIYTGVSN 339 >gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 359 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH FA+ L +G DL+ + +LGH L T+ Y++++ + Sbjct: 290 HDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHL 333 >gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ + +I D+ Sbjct: 322 TTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDE 374 >gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 398 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 + H LRH+ AT + G D+ +++ +LGHS + TTQIYT++ Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHL 318 >gi|262382525|ref|ZP_06075662.1| integrase [Bacteroides sp. 2_1_33B] gi|262295403|gb|EEY83334.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|313143229|ref|ZP_07805422.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818] gi|313128260|gb|EFR45877.1| integrase/recombinase [Helicobacter cinaedi CCUG 18818] Length = 262 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFA+ + D+ Q LGH+ L+ TQIY ++N Sbjct: 212 HLLRHSFASFVYRESRDILLTQKALGHASLNNTQIYVHMNE 252 >gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7] gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 3/50 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ---IYTNVNSKR 48 S H+LRH+ A++ + G D++++ +LGHSR+ T +++N++ KR Sbjct: 300 SVKFHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKR 349 >gi|298251725|ref|ZP_06975528.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546317|gb|EFH80185.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 318 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 11/56 (19%) Query: 6 HTLRHSFATHLLSNGG--------DLRSIQSILGHSRLSTTQIYTNVNSK---RMM 50 H LRH+FA LL L +IQ +LGH+ ++TT IYT V++ RMM Sbjct: 257 HDLRHTFAKALLDPAAYGLDRPPMPLPAIQQLLGHADIATTTIYTRVSADDLARMM 312 >gi|317152141|ref|YP_004120189.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316942392|gb|ADU61443.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 343 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHSF+ +L +GG ++++Q +LGHS T Sbjct: 280 HDLRHSFSVAMLESGGGMKALQKLLGHSEFRVT 312 >gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482] gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S Sbjct: 331 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 373 >gi|153956217|ref|YP_001396982.1| hypothetical protein CKL_3621 [Clostridium kluyveri DSM 555] gi|146349075|gb|EDK35611.1| Conserved protein [Clostridium kluyveri DSM 555] Length = 199 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H L+H+ A HL + D++ +Q LGH +S T+IY +K+ +Y Sbjct: 142 HALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDRMY 189 >gi|330997657|ref|ZP_08321502.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570185|gb|EGG51925.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 400 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T LS G + SI ++GH+ + TTQ Y V ++ E D+ Sbjct: 338 HASRHSFGTLTLSVGVPIESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 387 >gi|317480812|ref|ZP_07939896.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903035|gb|EFV24905.1| phage integrase [Bacteroides sp. 4_1_36] Length = 322 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 256 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 299 >gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 481 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 413 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 459 >gi|301308115|ref|ZP_07214069.1| integrase [Bacteroides sp. 20_3] gi|300833585|gb|EFK64201.1| integrase [Bacteroides sp. 20_3] Length = 411 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 347 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 390 >gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 430 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S Sbjct: 354 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396 >gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7] Length = 311 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|160872980|ref|YP_001556987.1| integrase family protein [Shewanella baltica OS195] gi|160858502|gb|ABX51727.1| integrase family protein [Shewanella baltica OS195] Length = 221 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S ++H+ R S T+ + +G D+ S+ ILGH+ TT Y + SKR+ E+ Sbjct: 165 SASSHSGRKSLCTNAVISGVDIESVARILGHASAETTIDYIVIQSKRIEEM 215 >gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14] gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14] Length = 411 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|291517466|emb|CBK71082.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] Length = 259 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH+LRH +AT + DL + +LGH+ + TTQ Y + R+ + T Sbjct: 203 TAHSLRHRYATTTYAATRDLLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 255 >gi|268611397|ref|ZP_06145124.1| phage integrase family site specific recombinase [Ruminococcus flavefaciens FD-1] Length = 357 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH+FAT + G D++S+ ILGH ++ T Sbjct: 304 HTLRHTFATRCIERGVDVKSLSEILGHYDVNVT 336 >gi|187928823|ref|YP_001899310.1| integrase family protein [Ralstonia pickettii 12J] gi|187725713|gb|ACD26878.1| integrase family protein [Ralstonia pickettii 12J] Length = 559 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 + H +RH+ ATH L +G +L ++ L H+ +STT IY + + KR +I Sbjct: 504 SPHWMRHTHATHALGSGAELTIVRDNLRHASVSTTSIYLHSDEVKRARQI 553 >gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] Length = 402 Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 + H LRH+ AT + G D+ +++ +LGHS + TTQIYT++ Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHL 318 >gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 331 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS A+ L++ G DL ++ ILGHS TTQ Y ++ ++ E ++ Sbjct: 274 HDLRHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHLQVEQQREALNK 323 >gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 381 Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54 T HTLRH+FA+ L+ G L + +LGHS TQ Y N S++ ++I D Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKIID 375 >gi|265751258|ref|ZP_06087321.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|263238154|gb|EEZ23604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 405 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|262039900|ref|ZP_06013172.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042731|gb|EEW43730.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 66 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66 LRH+ L G D R IQ LGH + T YT N+ R I+++ + + +KDKK Sbjct: 2 LRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWERNNL-LEEKDKK 59 >gi|241764020|ref|ZP_04762060.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241366694|gb|EER61159.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 207 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 M H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 150 MEYGTHSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205 >gi|224542983|ref|ZP_03683522.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM 15897] gi|224524121|gb|EEF93226.1| hypothetical protein CATMIT_02177 [Catenibacterium mitsuokai DSM 15897] Length = 281 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+ RH F + GG++ + I GHS L TT+IY +K Sbjct: 229 HSFRHLFGIVFMQQGGNIDELADIYGHSSLETTRIYLRTTAK 270 >gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] Length = 389 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH++AT L G R++Q +LGHS +S T YT+V Sbjct: 329 HDLRHTYATRLFELGEQARTVQELLGHSDVSVTLNTYTHV 368 >gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492] gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565] gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19] gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3] gi|332877314|ref|ZP_08445062.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492] gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565] gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19] gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3] gi|332684697|gb|EGJ57546.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 411 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 531 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S HTLRH+FATH ++ G L + LGHS + TT Y + + I+D+ Sbjct: 419 SVGVHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAHHAPELTPGIFDR 472 >gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 374 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T H+LR FAT + NG D+ I +LGH ++TT Sbjct: 267 IKVTCHSLRRGFATDMAENGTDVYVISKMLGHQNINTT 304 >gi|212695080|ref|ZP_03303208.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855] gi|212662396|gb|EEB22970.1| hypothetical protein BACDOR_04618 [Bacteroides dorei DSM 17855] Length = 407 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + L +G L ++ +LGHS++ TTQIY V ++ Sbjct: 344 HAGRHTYATEITLGHGVPLETVSKMLGHSQIETTQIYAKVTDDKI 388 >gi|126664399|ref|ZP_01735383.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] gi|126667639|ref|ZP_01738608.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] gi|126627908|gb|EAZ98536.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] gi|126630725|gb|EBA01339.1| putative transcriptional regulator, Fis family protein [Marinobacter sp. ELB17] Length = 301 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRH + HL ++ LR+IQ +GH+ TT IYT + + Sbjct: 234 TPHSLRHCYGAHLTASNLHLRAIQFEMGHACPKTTAIYTQLTDE 277 >gi|154244480|ref|YP_001415438.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154158565|gb|ABS65781.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 407 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T + LRH FA+ L+ G DL+ IQ +GHS++ T Sbjct: 328 TPYALRHYFASKLIEGGYDLKFIQQAMGHSKIEIT 362 >gi|313201274|ref|YP_004039932.1| integrase family protein [Methylovorus sp. MP688] gi|312440590|gb|ADQ84696.1| integrase family protein [Methylovorus sp. MP688] Length = 338 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT+RH+ A+ L+ +G DL+ +Q + H ++TT IY ++S+ Sbjct: 279 HTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAKLSSE 320 >gi|291515401|emb|CBK64611.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 405 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 26/40 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T + RH+FAT L +G ++ I LGHS LSTTQIY + Sbjct: 351 TTYVARHTFATVLKRSGVNIAIISESLGHSDLSTTQIYLD 390 >gi|260890962|ref|ZP_05902225.1| integrase [Leptotrichia hofstadii F0254] gi|260859515|gb|EEX74015.1| integrase [Leptotrichia hofstadii F0254] Length = 326 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+FAT + G D +++ ILGHS +S T Sbjct: 264 HSLRHTFATQAIELGIDCKTVSEILGHSTVSIT 296 >gi|218129371|ref|ZP_03458175.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697] gi|317475337|ref|ZP_07934602.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988441|gb|EEC54763.1| hypothetical protein BACEGG_00948 [Bacteroides eggerthii DSM 20697] gi|316908504|gb|EFV30193.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 405 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|139438761|ref|ZP_01772245.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC 25986] gi|133775841|gb|EBA39661.1| Hypothetical protein COLAER_01248 [Collinsella aerofaciens ATCC 25986] Length = 435 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 4/54 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN---VNSKRMMEIYDQ 55 H LRH+ AT L++N DL+++Q+ +GH+ STT YT+ N + E++++ Sbjct: 375 HGLRHTAATALVANNVDLKTVQARMGHASASTTANFYTHAIRANDRNAAEVFEK 428 >gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4] gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4] Length = 611 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ AT ++ G L +I ++LGH + T +Y + + + + Y Sbjct: 458 HQLRHTLATQAINRGMSLEAIAALLGHKTMEMTMVYARIADRTVADQY 505 >gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC 43184] gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC 43183] gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136] gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM 17393] gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855] gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697] gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19] gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22] gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3] gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis] gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC 43184] gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC 43183] gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136] gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM 17393] gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855] gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697] gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19] gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22] gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3] gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 411 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|303241940|ref|ZP_07328433.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302590495|gb|EFL60250.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 283 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T H LRH F T+ L G + + GHS + TT +YTN + K++++ Sbjct: 229 SITPHQLRHFFCTNALEKGMLAHEVANQAGHSNIHTTLLYTNPDKKKLID 278 >gi|42523500|ref|NP_968880.1| bacteriophage integrase or recombinase [Bdellovibrio bacteriovorus HD100] gi|39575706|emb|CAE79873.1| probable bacteriophage integrase or recombinase [Bdellovibrio bacteriovorus HD100] Length = 177 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FA L DLR +Q LGH ++ T +Y + Sbjct: 127 HALRHTFAIELYQKTKDLRLVQVALGHRNITNTMVYAD 164 >gi|322689266|ref|YP_004209000.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] gi|320460602|dbj|BAJ71222.1| putative phage integrase [Bifidobacterium longum subsp. infantis 157F] Length = 289 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 A LRHS+AT+ L+ G D+ + +LGHS + TT Y Sbjct: 231 ARNLRHSWATNTLAAGADIAIVSKMLGHSDIKTTAKY 267 >gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7] Length = 404 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S Sbjct: 330 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 372 >gi|300781823|ref|YP_003739058.1| resolvase [Erwinia billingiae Eb661] gi|299060089|emb|CAX53279.1| resolvase [Erwinia billingiae Eb661] Length = 237 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + TLRHSFA HL N + +Q+ +GH R +T+ Y V Sbjct: 170 SPRTLRHSFAMHLFLNHVPPKVVQTYMGHERYESTEQYLKV 210 >gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1] Length = 354 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ----THPS 59 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y + T Sbjct: 287 SPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPSATFIEDAYQRAVAGTLAE 346 Query: 60 ITQKD 64 +T+KD Sbjct: 347 LTEKD 351 >gi|295094710|emb|CBK83801.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 394 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 + H LRH+FAT + NG +++Q ILGH L T +Y +V Sbjct: 337 SPHCLRHTFATRAIENGMQPKTLQKILGHGSLQMTMDLYCHV 378 >gi|256838892|ref|ZP_05544402.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739811|gb|EEU53135.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 389 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFA+ + L G + +I +LGHS + TTQIY V K Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPK 389 >gi|239620860|ref|ZP_04663891.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516236|gb|EEQ56103.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 291 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 A LRHS+AT+ L+ G D+ + +LGHS + TT Y Sbjct: 233 ARNLRHSWATNTLAAGADIAIVSKMLGHSDIKTTAKY 269 >gi|187935463|ref|YP_001885139.1| site-specific recombinase [Clostridium botulinum B str. Eklund 17B] gi|187723616|gb|ACD24837.1| site-specific recombinase [Clostridium botulinum B str. Eklund 17B] Length = 212 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 5/52 (9%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH++R ++A + N G DL SI+ +LGHS T++Y ++ E+YD Sbjct: 154 SAHSMRKTYAYRIYQNNGHDLLSIKEMLGHSSTEETKVYLGLDR----EVYD 201 >gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36] Length = 411 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|295092319|emb|CBK78426.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] gi|295114672|emb|CBL35519.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 281 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH FA N D+ + ILGHS + TT+IYT+++ Sbjct: 227 HNLRHLFARIYYKNNHDIVYLADILGHSSVETTRIYTSIS 266 >gi|229164860|ref|ZP_04292679.1| Integrase [Bacillus cereus R309803] gi|228618607|gb|EEK75614.1| Integrase [Bacillus cereus R309803] Length = 590 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 29/45 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +H RH+ AT ++ G D+ ++++ LGHS ++ T+ Y V +R+ Sbjct: 409 SHQFRHTVATEMIDAGVDIYAVKNFLGHSSVNMTEKYIKVYQQRL 453 >gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3] gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3] Length = 330 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH RH++A +++ NG D ++Q I G S + T + Y ++ M + +D+ P Sbjct: 266 KVTAHVYRHTWAKNMILNGCDAFTLQKIGGWSDIRTMRRYIQMDVGEMRKSHDEFSP 322 >gi|224369728|ref|YP_002603892.1| XerC [Desulfobacterium autotrophicum HRM2] gi|223692445|gb|ACN15728.1| XerC [Desulfobacterium autotrophicum HRM2] Length = 409 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+LRH+ A+ +L +G L I ILGH +T +Y V+ K++ E Sbjct: 354 HSLRHTAASRMLEHGTPLVVISDILGHMDTDSTAVYLKVDIKKLKE 399 >gi|219856542|ref|YP_002473664.1| hypothetical protein CKR_3199 [Clostridium kluyveri NBRC 12016] gi|219570266|dbj|BAH08250.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 204 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H L+H+ A HL + D++ +Q LGH +S T+IY +K+ +Y Sbjct: 147 HALKHTTAVHLAESDMDIKELQWWLGHKSVSNTEIYFQFTTKQQDRMY 194 >gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC BAA-613] gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC BAA-613] Length = 392 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 25/35 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH++A+ LL G D+ + +LGHS ++TT Sbjct: 336 TIHSLRHTYASRLLKRGVDVSVVSKLLGHSDINTT 370 >gi|144899640|emb|CAM76504.1| Integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 195 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 ++H+ R SF T L G +R +Q + GHS L+TTQ Y +VN Sbjct: 141 ASSHSGRRSFITTLAEKGVGVRVLQHLAGHSSLATTQRYIDVN 183 >gi|161525981|ref|YP_001580993.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189349304|ref|YP_001944932.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160343410|gb|ABX16496.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189333326|dbj|BAG42396.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 188 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 ++H+ R SF T+L S G +R + S+ GH +STTQ Y +VN Sbjct: 134 GASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177 >gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 314 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 27/53 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + LRH+FA L NGG S+Q LGH+ L T+ Y + + EI P Sbjct: 241 YDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVHFTQNDLREINANASP 293 >gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259] gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259] Length = 471 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 403 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 449 >gi|256377938|ref|YP_003101598.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255922241|gb|ACU37752.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 439 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 26/36 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A+ L++ G D++++++ LGHS L T+ Y Sbjct: 376 HDLRHAHASWLVAGGADIQTVRARLGHSSLRATEKY 411 >gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 430 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S Sbjct: 354 TYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLS 396 >gi|253999172|ref|YP_003051235.1| integrase family protein [Methylovorus sp. SIP3-4] gi|253985851|gb|ACT50708.1| integrase family protein [Methylovorus sp. SIP3-4] Length = 338 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 29/42 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT+RH+ A+ L+ +G DL+ +Q + H ++TT IY ++S+ Sbjct: 279 HTMRHTCASRLVQSGVDLKRVQEYMRHKDINTTLIYAKLSSE 320 >gi|197285081|ref|YP_002150953.1| integrase/recombinase [Proteus mirabilis HI4320] gi|194682568|emb|CAR42606.1| putative integrase/recombinase [Proteus mirabilis HI4320] Length = 330 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GH+ + TTQ Y R+ Sbjct: 278 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRL 321 >gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+ + N D+ ++Q++LGHS S T+ Y ++ + + + Sbjct: 290 HDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDDYLRSVVE 338 >gi|269219930|ref|ZP_06163784.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210670|gb|EEZ77010.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 160 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRH FAT DL ++Q +LGH+ + TTQ Y Sbjct: 107 TMHTLRHRFATKAYRTDHDLIAVQRLLGHASIETTQRYVE 146 >gi|255012552|ref|ZP_05284678.1| integrase [Bacteroides sp. 2_1_7] gi|256839009|ref|ZP_05544519.1| integrase [Parabacteroides sp. D13] gi|298374561|ref|ZP_06984519.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] gi|301308234|ref|ZP_07214188.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|256739928|gb|EEU53252.1| integrase [Parabacteroides sp. D13] gi|298268929|gb|EFI10584.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] gi|300833704|gb|EFK64320.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFAT L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFATTLKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|268592413|ref|ZP_06126634.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM 1131] gi|291312200|gb|EFE52653.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM 1131] Length = 185 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 25/48 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH ++ T IYT N KR I+ Sbjct: 135 HMLRHACGYALADLGRDTRLIQDYLGHRNIAHTVIYTASNEKRFSGIW 182 >gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 311 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580] gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 352 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RH+ A+ L GGDLR +Q+I+GH L YT+++ Sbjct: 279 PHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLS 319 >gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 407 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 345 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 387 >gi|256838893|ref|ZP_05544403.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|319642542|ref|ZP_07997191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|256739812|gb|EEU53136.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|317385833|gb|EFV66763.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 403 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4] gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4] Length = 386 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 31/48 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ A+ +S G D+ +++ +LGH +++T++Y V ++ +E Sbjct: 329 TYHCSRHTTASLAISAGADISAVKDVLGHGSITSTEVYAKVALEKKIE 376 >gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii] Length = 336 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+ A HLL +G ++ I+ LGH L TT Y + + E P Sbjct: 258 TPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCEPVAVAP 317 Query: 64 DKKN 67 +K+ Sbjct: 318 TRKS 321 >gi|154423273|gb|ABS81541.1| putative phage integrase [Alcaligenes sp. NyZ215] Length = 443 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ ATH L+ G +L S++ L H+ ++TT IY Sbjct: 387 SPHWMRHTHATHALARGAELTSVRDNLRHASVATTSIY 424 >gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi NT] gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative [Clostridium novyi NT] Length = 387 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH++AT L G + +++Q++LGHS +S T YT+V Sbjct: 326 HDLRHTYATRLFELGEEAKTVQTLLGHSNISITLDTYTHV 365 >gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12] gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12] Length = 396 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 328 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 374 >gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 311 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|300710820|ref|YP_003736634.1| integrase/recombinase [Halalkalicoccus jeotgali B3] gi|299124503|gb|ADJ14842.1| integrase/recombinase [Halalkalicoccus jeotgali B3] Length = 310 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 M H+ RH A H L +G ++R++Q LGH+ L T Y + + E Y Sbjct: 254 MRIRPHSFRHGHAVHALKSGVNVRAVQEQLGHASLERTMQYMRLVEDDVAEAY 306 >gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 382 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 320 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 362 >gi|295085005|emb|CBK66528.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 403 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|237723043|ref|ZP_04553524.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229447565|gb|EEO53356.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 403 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|240147315|ref|ZP_04745916.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200489|gb|EEU98773.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|291535743|emb|CBL08855.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 76 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H RH+F ++LLSNG + +Q +LGH+ +STT IY +SKR Sbjct: 18 HMPRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIY--AHSKR 59 >gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] Length = 311 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] Length = 483 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 415 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 461 >gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002] gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 584 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEI 52 + H LRH+ A+H L+ G DL +++ L H+ +STT Y + N++R ++ Sbjct: 524 SPHWLRHTHASHALAGGVDLVAVRDNLRHASISTTSTYLHDDNARRAQQV 573 >gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 411 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|189348345|ref|YP_001941541.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|189338483|dbj|BAG47551.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 380 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S +AH +RH+ +H+ DLR ++ LGH+ L+TT +Y Sbjct: 320 SASAHWVRHTAGSHMTDRQVDLRFVRDNLGHASLATTSVY 359 >gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174] gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174] Length = 388 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F T N +++ IQ+++GH+ + TT IY V + E Sbjct: 328 SCHHLRHTFCTRFCENETNIKVIQAVMGHANIETTMDIYAEVTDMKKTE 376 >gi|53714293|ref|YP_100285.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|160890419|ref|ZP_02071422.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492] gi|167762413|ref|ZP_02434540.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC 43183] gi|237714129|ref|ZP_04544610.1| transposase [Bacteroides sp. D1] gi|253565736|ref|ZP_04843191.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|262407179|ref|ZP_06083728.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22] gi|293372588|ref|ZP_06618970.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294646951|ref|ZP_06724570.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809674|ref|ZP_06768363.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|299148363|ref|ZP_07041425.1| integrase [Bacteroides sp. 3_1_23] gi|317479063|ref|ZP_07938205.1| phage integrase [Bacteroides sp. 4_1_36] gi|52217158|dbj|BAD49751.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|156860151|gb|EDO53582.1| hypothetical protein BACUNI_02861 [Bacteroides uniformis ATCC 8492] gi|167699519|gb|EDS16098.1| hypothetical protein BACSTE_00767 [Bacteroides stercoris ATCC 43183] gi|229445953|gb|EEO51744.1| transposase [Bacteroides sp. D1] gi|251946015|gb|EES86422.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|262355882|gb|EEZ04973.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_22] gi|291515085|emb|CBK64295.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] gi|292632397|gb|EFF50993.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292637721|gb|EFF56120.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443098|gb|EFG11876.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298513124|gb|EFI37011.1| integrase [Bacteroides sp. 3_1_23] gi|316904777|gb|EFV26589.1| phage integrase [Bacteroides sp. 4_1_36] Length = 403 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|227355496|ref|ZP_03839891.1| integrase/recombinase [Proteus mirabilis ATCC 29906] gi|227164292|gb|EEI49181.1| integrase/recombinase [Proteus mirabilis ATCC 29906] Length = 330 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LR +FA+ +L NG D+ +++ +GH+ + TTQ Y R+ Sbjct: 278 HDLRRTFASAMLDNGEDIVTVKDAMGHASIMTTQRYDRRGDDRL 321 >gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815] gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815] Length = 343 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 27/55 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRH+ A LL G D +I LGH+ L+TT Y + + Q P I Sbjct: 266 HSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320 >gi|329908591|ref|ZP_08274896.1| Phage integrase [Oxalobacteraceae bacterium IMCC9480] gi|327546676|gb|EGF31631.1| Phage integrase [Oxalobacteraceae bacterium IMCC9480] Length = 71 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L +G D+ +Q LGH+ ++TT+IY Sbjct: 19 HALRATAATNALDHGADIAKVQEWLGHANIATTRIY 54 >gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6] gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6] Length = 411 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|218666422|ref|YP_002425617.1| tyrosine recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518635|gb|ACK79221.1| tyrosine recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 301 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G DLR +Q +GHS + TT Y ++ Sbjct: 261 HLLRHTAASRWLAKGMDLRQVQENMGHSNIGTTSKYLHL 299 >gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275] gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275] Length = 377 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 ++ + HT RH+ AT LL G +++ +Q+ LGH+ +STT IY Sbjct: 311 INFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYV 353 >gi|29347339|ref|NP_810842.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|253570442|ref|ZP_04847850.1| transposase [Bacteroides sp. 1_1_6] gi|29339239|gb|AAO77036.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|251839391|gb|EES67474.1| transposase [Bacteroides sp. 1_1_6] Length = 403 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1] gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1] Length = 379 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 32/46 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H LRHS+A+ L+ G ++ ++ +LGHS+++TT Y +++++ Sbjct: 320 SVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQ 365 >gi|300854665|ref|YP_003779649.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] gi|300434780|gb|ADK14547.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] Length = 199 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H L+H+ A HL + D++ +Q LGH ++ T+IY +K+ ++Y Sbjct: 142 HALKHTTAVHLAESDMDIKELQWWLGHRSVTNTEIYFQFTTKQQEKMY 189 >gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 387 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 319 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 365 >gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676] gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676] Length = 330 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + G ++ +Q+ILGH+ + + Y N+ + E + + P Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNLFGNDVRERHKEFSP 321 >gi|189459447|ref|ZP_03008232.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM 17136] gi|189463074|ref|ZP_03011859.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM 17136] gi|189430226|gb|EDU99210.1| hypothetical protein BACCOP_03776 [Bacteroides coprocola DSM 17136] gi|189433843|gb|EDV02828.1| hypothetical protein BACCOP_00070 [Bacteroides coprocola DSM 17136] Length = 113 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T + RHSFA+ L +G ++ I LGHS L+TTQIY + Sbjct: 57 NVTTYVARHSFASVLKKSGVNIALISEALGHSDLATTQIYLD 98 >gi|326204540|ref|ZP_08194397.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985333|gb|EGD46172.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 279 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T H LRH + ++ L N + I SI GHS + T +YTN + +++ E Sbjct: 225 SLTPHQLRHHWCSNALENDFTVAEIASIAGHSNIHTILLYTNPSKQKLKE 274 >gi|289645149|ref|ZP_06477170.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505044|gb|EFD26122.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 366 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRH +AT L+S G + +Q LGH STT N + R + +D+ ++T Sbjct: 298 SLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT---LNRYTHRPKDYHDRLRAALT 354 >gi|227497442|ref|ZP_03927674.1| phage integrase [Actinomyces urogenitalis DSM 15434] gi|226833118|gb|EEH65501.1| phage integrase [Actinomyces urogenitalis DSM 15434] Length = 294 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH FAT DL S+Q +LGH+ +TTQ Y ++ ++ + Sbjct: 218 TLHALRHRFATTAYDATRDLFSVQRLLGHASPTTTQRYVATDADQLRAV 266 >gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 336 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H+LRH+ HLL +G L I+ LGH + TT+IY N Sbjct: 259 SPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARAN 300 >gi|265764112|ref|ZP_06092680.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256720|gb|EEZ28066.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|301162792|emb|CBW22339.1| putative phage integrase [Bacteroides fragilis 638R] Length = 403 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+ G + SI ++GH+ + +TQ+Y V +++ Sbjct: 339 HMARHSFGTLTLTAGIPIESIARMMGHTNIDSTQVYAQVTDRKI 382 >gi|264678068|ref|YP_003277975.1| phage integrase [Comamonas testosteroni CNB-2] gi|262208581|gb|ACY32679.1| phage integrase [Comamonas testosteroni CNB-2] Length = 207 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 M H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 150 MEYGTHSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205 >gi|82546659|ref|YP_410606.1| tyrosine recombinase [Shigella boydii Sb227] gi|81248070|gb|ABB68778.1| FimB [Shigella boydii Sb227] gi|320186175|gb|EFW60916.1| type 1 fimbriae regulatory protein FimB [Shigella flexneri CDC 796-83] Length = 200 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608] gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608] Length = 411 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein [Rhodococcus erythropolis SK121] gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein [Rhodococcus erythropolis SK121] Length = 611 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ AT ++ G L +I ++LGH + T +Y + + + + Y Sbjct: 458 HQLRHTLATQAINRGMSLEAIAALLGHKTMEMTMVYARIADRTVADQY 505 >gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 354 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+ + GGDL + ILGHS L T Y ++ + + E Sbjct: 280 HDLRHTFASWYVQRGGDLYRLSRILGHSGLQMTARYGHLRVEDLHE 325 >gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 314 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 27/53 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + LRH+FA L NGG S+Q LGH+ L T+ Y + + EI P Sbjct: 241 YDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVHFTQNDLREINTSASP 293 >gi|295698208|ref|YP_003602864.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060320|gb|ADF65056.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 258 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T RHSFA H+L N + +QS++GH +T++YT + Sbjct: 189 TFRHSFAMHILFNRIHPKVLQSLMGHKSFKSTEVYTRL 226 >gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302] gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302] Length = 411 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|257064282|ref|YP_003143954.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791935|gb|ACV22605.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 398 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+ ATHLL G + + LGHS+++ T Sbjct: 334 THFHTLRHTHATHLLREGVPMNEVSRRLGHSKVALT 369 >gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 411 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612] gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612] Length = 338 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IY---TNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +G D++ I ILGHS + T IY T+++ K+ M + D+ + +I Sbjct: 275 HDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITDLHKKQEMVLLDKLNSTIY 334 Query: 62 QK 63 K Sbjct: 335 GK 336 >gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 411 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|295402694|ref|ZP_06812637.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975266|gb|EFG50901.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 284 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH F +H +S G + + + GHS + TT +YTN +++ +Q Sbjct: 232 TPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMNQ 283 >gi|290474154|ref|YP_003467031.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] gi|289173464|emb|CBJ80243.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] Length = 234 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 26/54 (48%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+ L NG D R IQ LGH + T YT N+ R ++D Sbjct: 137 ICANPHMLRHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFETVWD 190 >gi|268609808|ref|ZP_06143535.1| hypothetical protein RflaF_09962 [Ruminococcus flavefaciens FD-1] Length = 454 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS A+ LL+NG ++ IQ LGHS TT N N+ Sbjct: 347 HDLRHSCASLLLANGVPMKEIQEWLGHSNYRTTIPVPNSNT 387 >gi|319942072|ref|ZP_08016391.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis 3_1_45B] gi|319804456|gb|EFW01334.1| hypothetical protein HMPREF9464_01610 [Sutterella wadsworthensis 3_1_45B] Length = 331 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LR +FAT LL+ D+ ++++++GH+ +STT Y Sbjct: 277 TTHDLRRTFATRLLAKNVDIVAVKNLMGHANVSTTAKY 314 >gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 311 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|302037468|ref|YP_003797790.1| hypothetical protein NIDE2145 [Candidatus Nitrospira defluvii] gi|300605532|emb|CBK41865.1| protein of unknown function [Candidatus Nitrospira defluvii] Length = 168 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58 H +RH+FAT L+ G + +Q +LG+ +S TQ Y + +SK E + D+ P Sbjct: 19 HDMRHTFATRLVQRGVERYKVQRLLGYKTISMTQRYAHHSSKSFREGVKVLDECPP 74 >gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum marinum IMCC1322] Length = 470 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA+ +S G L I +LGH+++ TT Y ++ + M E Sbjct: 329 HDLRHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAHLMAAPMTE 374 >gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 398 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + G +R +Q LGH ++TT Y +++ E+ + P Sbjct: 314 HVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRLAP 366 >gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855] gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855] Length = 311 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+ A+H L G DL ++ LGH + TT+ Y + + Y P Sbjct: 253 SPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHAQPGKSSSYYVDEAP 307 >gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 411 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|319951007|ref|ZP_08024875.1| integrase family protein [Dietzia cinnamea P4] gi|319435328|gb|EFV90580.1| integrase family protein [Dietzia cinnamea P4] Length = 196 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LR S+ T L+ +G D R IQ +GH STT +YT V+ Sbjct: 131 HSLRRSYVTLLVESGYDTRFIQEQVGHEYASTTSLYTFVS 170 >gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23] gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3] gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron] gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23] gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3] Length = 411 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|256840829|ref|ZP_05546337.1| integrase [Parabacteroides sp. D13] gi|256738101|gb|EEU51427.1| integrase [Parabacteroides sp. D13] Length = 184 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 116 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 156 >gi|225390518|ref|ZP_03760242.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme DSM 15981] gi|225043423|gb|EEG53669.1| hypothetical protein CLOSTASPAR_04273 [Clostridium asparagiforme DSM 15981] Length = 269 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+ RH FA L GD+ + ++LGH L TT+IY +S +I Sbjct: 216 HSFRHYFAKTFLEACGDITLLSNLLGHENLETTRIYLRRSSNEQYQI 262 >gi|254168548|ref|ZP_04875392.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622603|gb|EDY35174.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 305 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMME 51 AH RH A L G +L +I+ LGHS L TTQIY + + S + +E Sbjct: 225 AHLARHWRAIKFLEEGVNLETIRRYLGHSSLKTTQIYLSKMESSKAVE 272 >gi|323965421|gb|EGB60876.1| phage integrase [Escherichia coli M863] gi|327250220|gb|EGE61939.1| phage integrase family protein [Escherichia coli STEC_7v] Length = 200 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|317501620|ref|ZP_07959813.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896997|gb|EFV19075.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 368 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 313 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 347 >gi|317504298|ref|ZP_07962286.1| integrase [Prevotella salivae DSM 15606] gi|315664592|gb|EFV04271.1| integrase [Prevotella salivae DSM 15606] Length = 382 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RH+FAT +S G + S+ +LGH+ + TQIY Sbjct: 342 TFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIY 379 >gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 392 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 24/35 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H +RHSFAT L+ G D++++ +LGH+ + T Sbjct: 332 TFHGIRHSFATRLIEQGVDVKTVSQLLGHTDVKIT 366 >gi|290474148|ref|YP_003467025.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] gi|289173458|emb|CBJ80237.1| fimbriae regulatory protein [Xenorhabdus bovienii SS-2004] Length = 234 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 26/54 (48%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+ L NG D R IQ LGH + T YT N+ R ++D Sbjct: 137 ICANPHMLRHACGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFETVWD 190 >gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13] gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13] Length = 419 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 351 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 397 >gi|206562878|ref|YP_002233641.1| putative phage integrase [Burkholderia cenocepacia J2315] gi|198038918|emb|CAR54880.1| putative phage integrase [Burkholderia cenocepacia J2315] Length = 329 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 M H LRHS A+ +++ G DL ++ +LGH ++T+ Y ++ + R+ E Sbjct: 271 MGVRFHDLRHSAASEMINAGIDLYTVAGVLGHKTTTSTKRYAHLVTDRLAE 321 >gi|110644753|ref|YP_672483.1| tyrosine recombinase [Escherichia coli 536] gi|1816485|emb|CAA71839.1| FimB recombinase [Escherichia coli] gi|110346345|gb|ABG72582.1| type 1 fimbriae regulatory protein FimB [Escherichia coli 536] Length = 200 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|313157859|gb|EFR57266.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 422 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RH+FAT + LS G + +I +LGH + TTQIY + Sbjct: 345 TFHSARHTFATTITLSQGVAIETISKLLGHRNIRTTQIYATI 386 >gi|331660931|ref|ZP_08361863.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA206] gi|331051973|gb|EGI24012.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA206] Length = 200 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA] gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA] Length = 411 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|41459|emb|CAA27560.1| fimB [Escherichia coli] Length = 200 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|328885775|emb|CCA59014.1| site-specific recombinase, phage integrase family [Streptomyces venezuelae ATCC 10712] Length = 283 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H++RH+ A+ L+ NG L +Q +LGH TTQ Y ++ Sbjct: 219 HSMRHTCASWLVQNGVSLYEVQHLLGHESYQTTQRYAHL 257 >gi|256840762|ref|ZP_05546270.1| integrase [Parabacteroides sp. D13] gi|256738034|gb|EEU51360.1| integrase [Parabacteroides sp. D13] Length = 189 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 121 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 161 >gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7] Length = 311 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 283 >gi|218263387|ref|ZP_03477507.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii DSM 18315] gi|218222767|gb|EEC95417.1| hypothetical protein PRABACTJOHN_03193 [Parabacteroides johnsonii DSM 18315] Length = 226 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+F T L+S G + S ++GH+ +++TQIY + Sbjct: 162 HAARHTFGTFLVSEGISIESAAKMMGHADINSTQIYAQI 200 >gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+F T L G R+IQ++ GH + TT Y +V+++ +E Sbjct: 314 HKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVSARAPVE 359 >gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1] gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1] Length = 410 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + H+LRH+F T + G +++ IQ LGH +STT IYT+V + Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDALGHKDVSTTLNIYTDVTKE 395 >gi|319938621|ref|ZP_08012999.1| integrase [Coprobacillus sp. 29_1] gi|319806186|gb|EFW02901.1| integrase [Coprobacillus sp. 29_1] Length = 379 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 324 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 358 >gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 324 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 23/34 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT L+ G D++ + +LGHS ++ T Sbjct: 268 VHALRHTFATLLIRRGVDIKMVSELLGHSDVTIT 301 >gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 411 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 389 >gi|258406644|ref|YP_003199385.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257798871|gb|ACV69807.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 218 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRH+ A LLS G + ++Q +LGHS L TT Y ++ + Sbjct: 165 PHTLRHTRAMELLSAGVPVTAVQDLLGHSSLLTTAQYLRLSGQ 207 >gi|218703010|ref|YP_002410639.1| tyrosine recombinase [Escherichia coli IAI39] gi|218372996|emb|CAR20881.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli IAI39] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|26251199|ref|NP_757239.1| tyrosine recombinase [Escherichia coli CFT073] gi|91213957|ref|YP_543943.1| tyrosine recombinase [Escherichia coli UTI89] gi|117626620|ref|YP_859943.1| tyrosine recombinase [Escherichia coli APEC O1] gi|170681303|ref|YP_001746749.1| tyrosine recombinase [Escherichia coli SMS-3-5] gi|191170695|ref|ZP_03032247.1| type 1 fimbriae regulatory protein FimB [Escherichia coli F11] gi|215489636|ref|YP_002332067.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218692717|ref|YP_002400929.1| tyrosine recombinase [Escherichia coli ED1a] gi|300977980|ref|ZP_07174111.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|300992557|ref|ZP_07179924.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1] gi|306815504|ref|ZP_07449653.1| tyrosine recombinase [Escherichia coli NC101] gi|331650433|ref|ZP_08351505.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605] gi|26111631|gb|AAN83813.1|AE016771_324 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073] gi|732681|emb|CAA85725.1| FimB protein [Escherichia coli] gi|91075531|gb|ABE10412.1| type 1 fimbriae regulatory protein FimB [Escherichia coli UTI89] gi|115515744|gb|ABJ03819.1| type 1 fimbriae regulatory protein FimB [Escherichia coli APEC O1] gi|170519021|gb|ACB17199.1| type 1 fimbriae regulatory protein FimB [Escherichia coli SMS-3-5] gi|190908919|gb|EDV68506.1| type 1 fimbriae regulatory protein FimB [Escherichia coli F11] gi|215267708|emb|CAS12167.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O127:H6 str. E2348/69] gi|218430281|emb|CAR11150.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli ED1a] gi|222036048|emb|CAP78793.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli LF82] gi|294490775|gb|ADE89531.1| type 1 fimbriae regulatory protein FimB [Escherichia coli IHE3034] gi|300305298|gb|EFJ59818.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1] gi|300409774|gb|EFJ93312.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|305851166|gb|EFM51621.1| tyrosine recombinase [Escherichia coli NC101] gi|307629470|gb|ADN73774.1| tyrosine recombinase [Escherichia coli UM146] gi|312948931|gb|ADR29758.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C] gi|315293235|gb|EFU52587.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1] gi|315298919|gb|EFU58173.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3] gi|320193596|gb|EFW68231.1| type 1 fimbriae regulatory protein FimB [Escherichia coli WV_060327] gi|323189839|gb|EFZ75117.1| phage integrase family protein [Escherichia coli RN587/1] gi|324005153|gb|EGB74372.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2] gi|324012902|gb|EGB82121.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1] gi|330909748|gb|EGH38258.1| type 1 fimbriae regulatory protein FimB [Escherichia coli AA86] gi|331040827|gb|EGI12985.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|15804887|ref|NP_290928.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933] gi|15834525|ref|NP_313298.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai] gi|16132133|ref|NP_418732.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. MG1655] gi|89111024|ref|AP_004804.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. W3110] gi|157163756|ref|YP_001461074.1| tyrosine recombinase [Escherichia coli HS] gi|168754878|ref|ZP_02779885.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4401] gi|168760553|ref|ZP_02785560.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4501] gi|168766587|ref|ZP_02791594.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4486] gi|168784949|ref|ZP_02809956.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC869] gi|168797878|ref|ZP_02822885.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC508] gi|191167175|ref|ZP_03028995.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B7A] gi|193063684|ref|ZP_03044772.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E22] gi|193070121|ref|ZP_03051067.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E110019] gi|194426695|ref|ZP_03059249.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B171] gi|195937320|ref|ZP_03082702.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024] gi|209400483|ref|YP_002273837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4115] gi|209921776|ref|YP_002295860.1| tyrosine recombinase [Escherichia coli SE11] gi|217325065|ref|ZP_03441149.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. TW14588] gi|218556843|ref|YP_002389757.1| tyrosine recombinase [Escherichia coli IAI1] gi|218561488|ref|YP_002394401.1| tyrosine recombinase [Escherichia coli S88] gi|218707979|ref|YP_002415498.1| tyrosine recombinase [Escherichia coli UMN026] gi|237704053|ref|ZP_04534534.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|256019940|ref|ZP_05433805.1| tyrosine recombinase [Shigella sp. D9] gi|256025241|ref|ZP_05439106.1| tyrosine recombinase [Escherichia sp. 4_1_40B] gi|260847128|ref|YP_003224906.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O103:H2 str. 12009] gi|260858480|ref|YP_003232371.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O26:H11 str. 11368] gi|261226670|ref|ZP_05940951.1| tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261256943|ref|ZP_05949476.1| tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966] gi|291285693|ref|YP_003502511.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli O55:H7 str. CB9615] gi|293402969|ref|ZP_06647066.1| tyrosine recombinase [Escherichia coli FVEC1412] gi|293407996|ref|ZP_06651836.1| tyrosine recombinase [Escherichia coli B354] gi|293417776|ref|ZP_06660398.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185] gi|293476575|ref|ZP_06664983.1| tyrosine recombinase [Escherichia coli B088] gi|298378497|ref|ZP_06988381.1| tyrosine recombinase [Escherichia coli FVEC1302] gi|300818492|ref|ZP_07098701.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1] gi|300823754|ref|ZP_07103879.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7] gi|300895833|ref|ZP_07114415.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 198-1] gi|300905282|ref|ZP_07123054.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 84-1] gi|300926462|ref|ZP_07142258.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 182-1] gi|301019653|ref|ZP_07183810.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 196-1] gi|301021320|ref|ZP_07185349.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] gi|301305106|ref|ZP_07211206.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 124-1] gi|301328031|ref|ZP_07221192.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 78-1] gi|307312917|ref|ZP_07592545.1| integrase family protein [Escherichia coli W] gi|309795578|ref|ZP_07689994.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 145-7] gi|331666125|ref|ZP_08367006.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA271] gi|331680415|ref|ZP_08381074.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H591] gi|332281082|ref|ZP_08393495.1| tyrosine recombinase/inversion of on/off regulator of fimA [Shigella sp. D9] gi|83286950|sp|P0ADH6|FIMB_ECO57 RecName: Full=Type 1 fimbriae regulatory protein fimB gi|83286951|sp|P0ADH5|FIMB_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimB gi|12519319|gb|AAG59494.1|AE005662_6 recombinase involved in phase variation; regulator for fimA [Escherichia coli O157:H7 str. EDL933] gi|537153|gb|AAA97208.1| recombinase involved in phase variation [Escherichia coli str. K-12 substr. MG1655] gi|1790767|gb|AAC77268.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. MG1655] gi|13364749|dbj|BAB38694.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia coli O157:H7 str. Sakai] gi|85677055|dbj|BAE78305.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K12 substr. W3110] gi|157069436|gb|ABV08691.1| type 1 fimbriae regulatory protein FimB [Escherichia coli HS] gi|189357818|gb|EDU76237.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4401] gi|189364035|gb|EDU82454.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4486] gi|189368888|gb|EDU87304.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4501] gi|189374799|gb|EDU93215.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC869] gi|189379419|gb|EDU97835.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC508] gi|190902832|gb|EDV62561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B7A] gi|192930671|gb|EDV83277.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E22] gi|192956574|gb|EDV87031.1| type 1 fimbriae regulatory protein FimB [Escherichia coli E110019] gi|194415434|gb|EDX31702.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B171] gi|209161883|gb|ACI39316.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4115] gi|209749378|gb|ACI72996.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia coli] gi|209749380|gb|ACI72997.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia coli] gi|209749382|gb|ACI72998.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia coli] gi|209749384|gb|ACI72999.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia coli] gi|209915035|dbj|BAG80109.1| type-1 fimbriae regulator FimB [Escherichia coli SE11] gi|217321286|gb|EEC29710.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. TW14588] gi|218363612|emb|CAR01269.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli IAI1] gi|218368257|emb|CAR06074.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli S88] gi|218435076|emb|CAR16030.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli UMN026] gi|226901965|gb|EEH88224.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|257757129|dbj|BAI28631.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O26:H11 str. 11368] gi|257762275|dbj|BAI33772.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O103:H2 str. 12009] gi|281181463|dbj|BAI57793.1| recombinase FimB [Escherichia coli SE15] gi|290765566|gb|ADD59527.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli O55:H7 str. CB9615] gi|291321028|gb|EFE60470.1| tyrosine recombinase [Escherichia coli B088] gi|291429884|gb|EFF02898.1| tyrosine recombinase [Escherichia coli FVEC1412] gi|291430494|gb|EFF03492.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185] gi|291472247|gb|EFF14729.1| tyrosine recombinase [Escherichia coli B354] gi|298280831|gb|EFI22332.1| tyrosine recombinase [Escherichia coli FVEC1302] gi|299882114|gb|EFI90325.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 196-1] gi|300360249|gb|EFJ76119.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 198-1] gi|300398171|gb|EFJ81709.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] gi|300402866|gb|EFJ86404.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 84-1] gi|300417569|gb|EFK00880.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 182-1] gi|300523666|gb|EFK44735.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7] gi|300528896|gb|EFK49958.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1] gi|300839611|gb|EFK67371.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 124-1] gi|300845478|gb|EFK73238.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 78-1] gi|306907085|gb|EFN37592.1| integrase family protein [Escherichia coli W] gi|308120702|gb|EFO57964.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 145-7] gi|309704782|emb|CBJ04133.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli ETEC H10407] gi|315063614|gb|ADT77941.1| tyrosine recombinase/inversion of on/off regulator of FimA [Escherichia coli W] gi|315255841|gb|EFU35809.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 85-1] gi|320190574|gb|EFW65224.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC1212] gi|320200579|gb|EFW75165.1| type 1 fimbriae regulatory protein FimB [Escherichia coli EC4100B] gi|320639039|gb|EFX08685.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101] gi|320644408|gb|EFX13473.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89] gi|320649726|gb|EFX18250.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687] gi|320654774|gb|EFX22743.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665555|gb|EFX32601.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61] gi|323182027|gb|EFZ67438.1| phage integrase family protein [Escherichia coli 1357] gi|323380305|gb|ADX52573.1| integrase family protein [Escherichia coli KO11] gi|323935244|gb|EGB31597.1| phage integrase [Escherichia coli E1520] gi|323945828|gb|EGB41873.1| phage integrase [Escherichia coli H120] gi|323950598|gb|EGB46476.1| phage integrase [Escherichia coli H252] gi|323960178|gb|EGB55821.1| phage integrase [Escherichia coli H489] gi|323975622|gb|EGB70719.1| phage integrase [Escherichia coli TW10509] gi|324016930|gb|EGB86149.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3] gi|324118515|gb|EGC12408.1| phage integrase [Escherichia coli E1167] gi|326345376|gb|EGD69119.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. 1125] gi|326346769|gb|EGD70503.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. 1044] gi|331066336|gb|EGI38213.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA271] gi|331071878|gb|EGI43214.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H591] gi|332083283|gb|EGI88514.1| phage integrase family protein [Shigella boydii 5216-82] gi|332103434|gb|EGJ06780.1| tyrosine recombinase/inversion of on/off regulator of fimA [Shigella sp. D9] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|260450874|gb|ACX41296.1| integrase family protein [Escherichia coli DH1] gi|315138868|dbj|BAJ46027.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli DH1] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|239628066|ref|ZP_04671097.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518212|gb|EEQ58078.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 293 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH FA S +L + ILGHS + TT+IY + K+ +I D+ + ++ Sbjct: 221 HNFRHLFAKCFYSIEKNLSHLADILGHSSIETTRIYVAASIKQYEKIMDKMRIEVDKQKP 280 Query: 66 KN 67 +N Sbjct: 281 QN 282 >gi|153930721|ref|YP_001393390.1| putative integrase family protein [Yersinia pseudotuberculosis IP 31758] gi|152958262|gb|ABS45724.1| putative integrase family protein [Yersinia pseudotuberculosis IP 31758] Length = 376 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-------NVNSKRMMEIYD 54 T H LRH+ ATH G L + Q LGH+ TT+IY ++++R+ +++D Sbjct: 316 TTHWLRHTNATHRFMAGASLETTQDELGHADPRTTRIYAKTSNEKRKLDAERLADLFD 373 >gi|331082739|ref|ZP_08331862.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400358|gb|EGG80000.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium 6_1_63FAA] Length = 368 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+LL G D +++Q + GH TT IY V + +++D + + Q Sbjct: 305 TPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSAFHQ 364 >gi|331650786|ref|ZP_08351814.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M718] gi|331051240|gb|EGI23289.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M718] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|300928760|ref|ZP_07144275.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 187-1] gi|300463240|gb|EFK26733.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 187-1] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|301048269|ref|ZP_07195303.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|300299891|gb|EFJ56276.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896] Length = 411 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F + N +++ IQ I+GH+ + TT IY NS + E Sbjct: 351 SCHHLRHTFCSRFCENETNIKVIQEIMGHASIETTMDIYAEANSDKKKE 399 >gi|260871032|ref|YP_003237434.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O111:H- str. 11128] gi|257767388|dbj|BAI38883.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O111:H- str. 11128] gi|323176200|gb|EFZ61792.1| phage integrase family protein [Escherichia coli 1180] Length = 200 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 406 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S Sbjct: 330 TYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372 >gi|237719819|ref|ZP_04550300.1| integrase [Bacteroides sp. 2_2_4] gi|229451088|gb|EEO56879.1| integrase [Bacteroides sp. 2_2_4] gi|295086377|emb|CBK67900.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 389 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H RH+FAT + L + L ++ +LGH++++TTQ+Y V ++M Sbjct: 316 VTYHVARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVM 364 >gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 387 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 T H RH+FA ++ D+ ++ +LGH ++ T+IYT V NSK+ Sbjct: 330 TFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEVLDNSKK 376 >gi|161523680|ref|YP_001578692.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189351551|ref|YP_001947179.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160341109|gb|ABX14195.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189335573|dbj|BAG44643.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 188 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 ++H+ R SF T+L S G +R + S+ GH +STTQ Y +VN Sbjct: 134 GASSHSGRRSFITNLASKGVGVRVLMSLAGHRDISTTQRYIDVN 177 >gi|269137402|ref|YP_003294102.1| putative integrase [Edwardsiella tarda EIB202] gi|267983062|gb|ACY82891.1| putative integrase [Edwardsiella tarda EIB202] Length = 306 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LR +F T LL G DL ++ + GHS +STT +Y Sbjct: 252 TPHDLRRTFITRLLEQGTDLNIVRQLAGHSDISTTALY 289 >gi|291434863|ref|YP_003518244.1| tyrosine-based site-specific recombinase activity site-specific DNA integration [Cupriavidus metallidurans CH34] gi|93359093|gb|ABF13179.1| tyrosine-based site-specific recombinase activity site-specific DNA integration [Cupriavidus metallidurans CH34] Length = 398 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H LRHS ATHLL G + +Q L H ++TT+ YT+ Sbjct: 340 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 381 >gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2] gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2] Length = 359 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AH LRHS AT D+ S++ LGH + TT IYT+V Sbjct: 302 SAHKLRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHV 342 >gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR--MMEIYDQTHPS 59 + H RH+ A H+ +G +L ++ LGH+ +STT +Y T++N KR + ++ D P Sbjct: 259 SPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMKRQALEKVSDSPVPD 318 Query: 60 I 60 + Sbjct: 319 L 319 >gi|299137463|ref|ZP_07030645.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600868|gb|EFI57024.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 430 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 25/47 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRH+ AT LL G L I LGH L + IY + + + ++ Sbjct: 375 HSLRHACATRLLHKGSSLHQIADFLGHRDLKSVSIYARCDVRSLRKV 421 >gi|257880416|ref|ZP_05660069.1| phage integrase/recombinase [Enterococcus faecium 1,230,933] gi|257814644|gb|EEV43402.1| phage integrase/recombinase [Enterococcus faecium 1,230,933] Length = 395 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH++AT G ++ I S L HS +STT+IY N Sbjct: 335 SPHKLRHTYATIARQGGANMNQISSALTHSDISTTRIYVN 374 >gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4] gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 406 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S Sbjct: 330 TYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 372 >gi|237733524|ref|ZP_04564005.1| integrase [Mollicutes bacterium D7] gi|229383357|gb|EEO33448.1| integrase [Coprobacillus sp. D7] Length = 397 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 360 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F T + G DL +Q++LGH+ + TT Y ++ + YD Sbjct: 302 HALRHTFGTAMAEAGVDLAVMQALLGHAHIDTTARYIHLAPTHVKAEYD 350 >gi|331088577|ref|ZP_08337488.1| transposase [Lachnospiraceae bacterium 3_1_46FAA] gi|330407534|gb|EGG87034.1| transposase [Lachnospiraceae bacterium 3_1_46FAA] Length = 397 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2] Length = 160 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+F T L G DL +Q++LGH+ + TT Y ++ + +D I Sbjct: 101 HALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLAPVHVKGEFDAARERI 155 >gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 391 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH++AT L G +++QS LGHS +S T YT+V Sbjct: 330 HDLRHTYATRLFELGESAKTVQSFLGHSDISVTLDTYTHV 369 >gi|160914347|ref|ZP_02076566.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991] gi|160915333|ref|ZP_02077545.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991] gi|158432724|gb|EDP11013.1| hypothetical protein EUBDOL_01341 [Eubacterium dolichum DSM 3991] gi|158433820|gb|EDP12109.1| hypothetical protein EUBDOL_00355 [Eubacterium dolichum DSM 3991] Length = 266 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH FA + L+ D+ + ++GH + TT+IY S E+ D Sbjct: 213 HSFRHRFAKNFLAKCNDIAFLADLMGHESIETTRIYLRKTSTEQQELVD 261 >gi|56550669|ref|YP_161735.1| integrase/recombinase E2 protein [Cupriavidus metallidurans CH34] gi|56410375|emb|CAI30257.1| hypothetical integrase/recombinase E2 protein [Cupriavidus metallidurans CH34] Length = 364 Score = 38.9 bits (89), Expect = 0.27, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H LRHS ATHLL G + +Q L H ++TT+ YT+ Sbjct: 306 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 347 >gi|257891744|ref|ZP_05671397.1| phage integrase/recombinase [Enterococcus faecium 1,231,410] gi|260559379|ref|ZP_05831560.1| predicted protein [Enterococcus faecium C68] gi|293564021|ref|ZP_06678427.1| integrase/recombinase, phage integrase family [Enterococcus faecium E1162] gi|314937451|ref|ZP_07844786.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314942622|ref|ZP_07849453.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314952460|ref|ZP_07855464.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|314993647|ref|ZP_07858998.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314998215|ref|ZP_07863088.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|257828104|gb|EEV54730.1| phage integrase/recombinase [Enterococcus faecium 1,231,410] gi|260074478|gb|EEW62799.1| predicted protein [Enterococcus faecium C68] gi|291603939|gb|EFF33467.1| integrase/recombinase, phage integrase family [Enterococcus faecium E1162] gi|313587779|gb|EFR66624.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313591910|gb|EFR70755.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313595442|gb|EFR74287.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313598632|gb|EFR77477.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313643185|gb|EFS07765.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] Length = 408 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH++AT G ++ I S L HS +STT+IY N Sbjct: 348 SPHKLRHTYATIARQGGANMNQISSALTHSDISTTRIYVN 387 >gi|325916645|ref|ZP_08178907.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937] gi|325917934|ref|ZP_08180104.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937] gi|325535836|gb|EGD07662.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937] gi|325537142|gb|EGD08876.1| site-specific recombinase XerD [Xanthomonas vesicatoria ATCC 35937] Length = 118 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+F HL+ G LR +Q + GH+ +TT+ Y Sbjct: 65 HRLRHTFCAHLVMAGVPLRRVQVLAGHADYATTEKY 100 >gi|319936510|ref|ZP_08010925.1| integrase [Coprobacillus sp. 29_1] gi|319808402|gb|EFW04957.1| integrase [Coprobacillus sp. 29_1] Length = 391 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 336 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 370 >gi|298491503|ref|YP_003721680.1| integrase family protein ['Nostoc azollae' 0708] gi|298233421|gb|ADI64557.1| integrase family protein ['Nostoc azollae' 0708] Length = 193 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S H LRH+ +L S G D R+IQ LGH + T YT ++ +R + Sbjct: 140 SVHPHQLRHACGYYLASQGHDTRAIQDYLGHKNIHHTVRYTQMSPQRFESFW 191 >gi|166033606|ref|ZP_02236435.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC 27755] gi|319936262|ref|ZP_08010680.1| integrase [Coprobacillus sp. 29_1] gi|325262570|ref|ZP_08129307.1| transposase [Clostridium sp. D5] gi|166026791|gb|EDR45548.1| hypothetical protein DORFOR_03332 [Dorea formicigenerans ATCC 27755] gi|319808638|gb|EFW05182.1| integrase [Coprobacillus sp. 29_1] gi|324032402|gb|EGB93680.1| transposase [Clostridium sp. D5] Length = 397 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|153815592|ref|ZP_01968260.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756] gi|145847023|gb|EDK23941.1| hypothetical protein RUMTOR_01828 [Ruminococcus torques ATCC 27756] Length = 397 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|16519919|ref|NP_444039.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497418|sp|P55634|Y4RA_RHISN RecName: Full=Putative integrase/recombinase y4rA gi|2182598|gb|AAB92467.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 409 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 21/40 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RH A+ +L G L I +LGH + TT IY V+ Sbjct: 354 HQFRHGLASEMLRGGASLGEIGEVLGHRHVQTTAIYAKVD 393 >gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 441 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 29/39 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHS+A+ L++ G DL + ++GHS L+ T+ Y+++ Sbjct: 371 HSLRHSYASRLVARGVDLYVVGQLMGHSDLTMTKRYSHL 409 >gi|295109952|emb|CBL23905.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 382 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T H R +FAT + GG++++++ ILGHS L+ T +Y +V Sbjct: 319 THHAFRDTFATRYIEEGGNMQTLKKILGHSSLAMTADLYAHV 360 >gi|295100102|emb|CBK89191.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 397 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|170761279|ref|YP_001786805.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str. Loch Maree] gi|169408268|gb|ACA56679.1| XerC/D integrase-recombinase protein [Clostridium botulinum A3 str. Loch Maree] Length = 320 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +T R++FAT L NG + IQ LGHS + T+ Y N+ Sbjct: 248 VNTFRNTFATMALKNGAGIYLIQKCLGHSDIKMTERYINL 287 >gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 387 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 H LRH++AT L L+++Q +LGH +S T YT+V K + D+ Sbjct: 331 HALRHTYATKLFEKDVQLKTVQKLLGHKNISITADTYTHVMPKEKISAADK 381 >gi|120402127|ref|YP_951956.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954945|gb|ABM11950.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 364 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSF T L G DL IQ+++GH + Y ++ + E +D Sbjct: 306 HALRHSFGTALAEAGVDLSVIQALMGHDHADSAAAYIHLAPTFLREEFD 354 >gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 393 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHSFA+ L G DL I +LGH+++ TT Y ++ + Sbjct: 321 HDLRHSFASDALQLGQDLTMIGRLLGHTQVQTTARYAHLKT 361 >gi|331092498|ref|ZP_08341320.1| transposase [Lachnospiraceae bacterium 2_1_46FAA] gi|330400719|gb|EGG80322.1| transposase [Lachnospiraceae bacterium 2_1_46FAA] Length = 397 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1] gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1] Length = 390 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 335 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 369 >gi|317500069|ref|ZP_07958304.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898554|gb|EFV20590.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 397 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|302870559|ref|YP_003839196.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302573418|gb|ADL49620.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 491 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH AT+L G D++ +Q LGHS + T+ YT+V Sbjct: 429 HDLRHCAATYLRHGGADMKEVQETLGHSTIGLTSDTYTSV 468 >gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] Length = 319 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + ATH + G + +Q +LGH+R+ TT Y VN Sbjct: 267 HKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYVMVN 306 >gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM 16841] gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM 16841] Length = 404 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH AT +L N L I LGH+ +S+T++Y ++ K++ Sbjct: 349 TGMHAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLRISIKQL 395 >gi|200386479|ref|ZP_03213091.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603577|gb|EDZ02122.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 235 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q IL H + T Y ++ Sbjct: 177 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHL 215 >gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] Length = 476 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L NG D++++ +++GH TT IY+++ Sbjct: 325 HDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHI 364 >gi|270307672|ref|YP_003329730.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270153564|gb|ACZ61402.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 231 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHL--LSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LR +FA H L + GD LR +Q LGH + TT Y V+ + E YD+ Sbjct: 168 SPHKLRDAFAVHAVKLDDSGDGLRLLQEHLGHQSIVTTMKYRKVSGEEQKEWYDK 222 >gi|319948239|ref|ZP_08022394.1| integrase family protein [Dietzia cinnamea P4] gi|319438096|gb|EFV93061.1| integrase family protein [Dietzia cinnamea P4] Length = 196 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LR S+ T L+ +G D R IQ +GH STT +YT V+ Sbjct: 131 HSLRRSYVTLLVESGYDTRFIQEQVGHEYASTTSLYTFVS 170 >gi|317501527|ref|ZP_07959724.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316897082|gb|EFV19156.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 397 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 397 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] Length = 350 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RH++AT LL+NG D++++ S+LG + + +Y Sbjct: 293 TIHAFRHTYATTLLANGVDIKTVASLLGDNINTVMNVYV 331 >gi|237733013|ref|ZP_04563494.1| integrase [Mollicutes bacterium D7] gi|229383917|gb|EEO34008.1| integrase [Coprobacillus sp. D7] Length = 113 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 58 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 92 >gi|168749532|ref|ZP_02774554.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4113] gi|168773983|ref|ZP_02798990.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4196] gi|168782823|ref|ZP_02807830.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4076] gi|208808987|ref|ZP_03251324.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4206] gi|208812985|ref|ZP_03254314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4045] gi|208818623|ref|ZP_03258943.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4042] gi|254796314|ref|YP_003081151.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|187770205|gb|EDU34049.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4196] gi|188016199|gb|EDU54321.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4113] gi|188999762|gb|EDU68748.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4076] gi|208728788|gb|EDZ78389.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4206] gi|208734262|gb|EDZ82949.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4045] gi|208738746|gb|EDZ86428.1| type 1 fimbriae regulatory protein FimB [Escherichia coli O157:H7 str. EC4042] gi|209749386|gb|ACI73000.1| type 1 fimbriae regulatory recombinase protein FimB [Escherichia coli] gi|254595714|gb|ACT75075.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O157:H7 str. TW14359] Length = 200 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215] Length = 382 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54 T HTLRH+FA+ L+ G L + +LGHS TQ Y N S++ +++ D Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375 >gi|317479189|ref|ZP_07938325.1| integrase [Bacteroides sp. 4_1_36] gi|316904633|gb|EFV26451.1| integrase [Bacteroides sp. 4_1_36] Length = 394 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T ++S G + SI ++GH+ + TTQ Y V ++ E D+ Sbjct: 339 HQSRHTFGTMMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 388 >gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 328 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AHT RH+FA L+ GGD+ + +GH+ + TQ Y Sbjct: 255 SAHTFRHTFAKMYLAQGGDIFKLSREMGHTNVRITQKY 292 >gi|291335756|gb|ADD95359.1| phage related integrase [uncultured phage MedDCM-OCT-S05-C243] Length = 322 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T H LRH++ T ++ +G ++ ++ +GHS TQ Y + N +++ E Sbjct: 258 SYTFHGLRHTYGTLMVQSGQNIANVAHHMGHSSTQVTQRYVHANDEKLAE 307 >gi|257869751|ref|ZP_05649404.1| integrase [Enterococcus gallinarum EG2] gi|331087644|ref|ZP_08336572.1| transposase [Lachnospiraceae bacterium 3_1_46FAA] gi|257803915|gb|EEV32737.1| integrase [Enterococcus gallinarum EG2] gi|330399823|gb|EGG79483.1| transposase [Lachnospiraceae bacterium 3_1_46FAA] Length = 397 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|228918725|ref|ZP_04082145.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840942|gb|EEM86164.1| Phage integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 347 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|169349643|ref|ZP_02866581.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552] gi|169293718|gb|EDS75851.1| hypothetical protein CLOSPI_00381 [Clostridium spiroforme DSM 1552] Length = 316 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 261 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 295 >gi|188585737|ref|YP_001917282.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350424|gb|ACB84694.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 189 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH FA GDL +Q +LGH STT+ Y + R+ Sbjct: 134 TPHILRHVFAVDSYKKTGDLDKVQELLGHRFRSTTEEYLKIVDTRV 179 >gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668] gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668] Length = 381 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54 T HTLRH+FA+ L+ G L + +LGHS TQ Y N S++ +++ D Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375 >gi|89885937|ref|YP_516135.1| phage integrase [Rhodoferax ferrireducens T118] gi|89347935|gb|ABD72137.1| phage integrase [Rhodoferax ferrireducens T118] Length = 229 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 32/50 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++H+ R FA +L++ GD+ +++ +LGH L +Q Y +V+ + E++ Sbjct: 172 SSHSGRRGFAGKVLASTGDMETVRVLLGHQSLDCSQRYVDVSPAILQEMF 221 >gi|333030412|ref|ZP_08458473.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|332741009|gb|EGJ71491.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 406 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+ G + ++ +LGH+ + TTQIY + ++++ Sbjct: 341 TFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKI 387 >gi|313897273|ref|ZP_07830817.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312957994|gb|EFR39618.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 397 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|307308992|ref|ZP_07588672.1| hypothetical protein SinmeBDRAFT_4555 [Sinorhizobium meliloti BL225C] gi|306900465|gb|EFN31079.1| hypothetical protein SinmeBDRAFT_4555 [Sinorhizobium meliloti BL225C] Length = 143 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + A H+ G+LR++Q +LGH +L +T Y + + I +Q Sbjct: 91 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTVQYLGIEVDDALAISEQVE 142 >gi|319760129|ref|YP_004124068.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317119735|gb|ADV02223.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 637 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ +H + L +Q +LGH+ LSTT IYTN + + E ++ Sbjct: 583 STHWLRHTRGSHS-AEAMPLHMLQRLLGHASLSTTTIYTNADEDDLYEAMEK 633 >gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 316 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+ AT L+ G+L + Q L H R++TT Y +V + ++ P T Sbjct: 232 HDLRHTAATRLVRATGNLAAAQKALRHRRITTTMRYAHVTEDDLRAALNKAAPVAT 287 >gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 389 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H+ R + AT+ + GG+ +++ +LGHS + TT IY ++ R Sbjct: 334 TFHSSRDTMATNFIDAGGNAETLKELLGHSDIKTTMIYVKISEAR 378 >gi|313897734|ref|ZP_07831275.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312957269|gb|EFR38896.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 397 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|300938278|ref|ZP_07153043.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|312969990|ref|ZP_07784172.1| phage integrase family protein [Escherichia coli 1827-70] gi|331671425|ref|ZP_08372223.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA280] gi|300456733|gb|EFK20226.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|310337488|gb|EFQ02599.1| phage integrase family protein [Escherichia coli 1827-70] gi|323157663|gb|EFZ43769.1| phage integrase family protein [Escherichia coli EPECa14] gi|323163312|gb|EFZ49140.1| phage integrase family protein [Escherichia coli E128010] gi|323171323|gb|EFZ56970.1| phage integrase family protein [Escherichia coli LT-68] gi|323939683|gb|EGB35887.1| phage integrase [Escherichia coli E482] gi|331071270|gb|EGI42627.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA280] gi|332087051|gb|EGI92185.1| phage integrase family protein [Shigella boydii 3594-74] Length = 119 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 60 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 110 >gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ AT L G L+ +Q LGHS ++TTQ Y Sbjct: 256 TPHWLRHTNATLALLQGASLQQVQETLGHSHINTTQRY 293 >gi|159027625|emb|CAO86997.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 189 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H R S T L NG DLR+IQ++ GH+ ++ Q Y ++ R Sbjct: 137 HCGRRSCITELARNGTDLRTIQAVSGHASIANLQRYIEIDPDR 179 >gi|126665398|ref|ZP_01736380.1| putative integrase [Marinobacter sp. ELB17] gi|126630026|gb|EBA00642.1| putative integrase [Marinobacter sp. ELB17] Length = 321 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRH+ A HLL+ L+ I LGH S+T++Y V+ Sbjct: 265 AHCLRHACARHLLAASFSLKQIGDQLGHRSASSTRVYAKVD 305 >gi|320660627|gb|EFX28088.1| tyrosine recombinase [Escherichia coli O55:H7 str. USDA 5905] Length = 162 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 103 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 153 >gi|309778436|ref|ZP_07673351.1| transposase [Erysipelotrichaceae bacterium 3_1_53] gi|308913799|gb|EFP59624.1| transposase [Erysipelotrichaceae bacterium 3_1_53] Length = 397 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|301163618|emb|CBW23171.1| putative putative phage integrase [Bacteroides fragilis 638R] Length = 407 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ + GH+ + T Q+Y + +++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVWGHTNIVTIQLYAKITIQKI 386 >gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM 10507] gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM 10507] Length = 397 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|218263745|ref|ZP_03477746.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii DSM 18315] gi|218222535|gb|EEC95185.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii DSM 18315] Length = 206 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + +++ Sbjct: 138 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKL 184 >gi|314950374|ref|ZP_07853650.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|313643325|gb|EFS07905.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 397 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] Length = 319 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + ATH + G + +Q +LGH+R+ TT Y VN Sbjct: 267 HKFRRTLATHAIDKGMPIEQVQKLLGHARIDTTMHYAMVN 306 >gi|290476509|ref|YP_003469414.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289175847|emb|CBJ82650.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 207 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 26/55 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHS L NG D R IQ LGH + T YT N+ R I+ + Sbjct: 135 VCANPHMLRHSCGYALADNGVDTRLIQDYLGHRNIRHTVRYTASNAGRFGAIWQE 189 >gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 258 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 300 >gi|56414705|ref|YP_151780.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363632|ref|YP_002143269.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128962|gb|AAV78468.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095109|emb|CAR60655.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 252 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q IL H + T Y ++ Sbjct: 194 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHL 232 >gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 355 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S Sbjct: 300 HILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 340 >gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 423 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+FAT + L NG L ++ +LGH +TTQIY V ++ Sbjct: 353 HMARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQ 395 >gi|307728055|ref|YP_003911268.1| integrase family protein [Burkholderia sp. CCGE1003] gi|307588580|gb|ADN61977.1| integrase family protein [Burkholderia sp. CCGE1003] Length = 389 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS A+H G DLR IQ + H+ + TT IY + DQ H Q+ Sbjct: 328 STHWLRHSAASHQADAGTDLRFIQRNMRHASIQTTGIYLHAED-------DQRHAETVQE 380 >gi|288800250|ref|ZP_06405708.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332463|gb|EFC70943.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 409 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 345 TTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVIPQKLFEEFNR 397 >gi|256833545|ref|YP_003162272.1| integrase family protein [Jonesia denitrificans DSM 20603] gi|256687076|gb|ACV09969.1| integrase family protein [Jonesia denitrificans DSM 20603] Length = 444 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H +RH+ A+ LL D ++I+ I+GHS + TTQ Y +V+ ME+ + ++ Q+ Sbjct: 341 HEIRHTTASLLLHMRIDPKTIKEIMGHSEIVTTQQYQHVS----MELAREAMEAVGQR 394 >gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99] gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99] Length = 330 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 26/44 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RH+FA + G ++ +Q+ILGH+ + + Y N+ Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYVNL 307 >gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147] Length = 382 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54 T HTLRH+FA+ L+ G L + +LGHS TQ Y N S++ +++ D Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375 >gi|319936530|ref|ZP_08010944.1| integrase [Coprobacillus sp. 29_1] gi|319808328|gb|EFW04888.1| integrase [Coprobacillus sp. 29_1] Length = 359 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 304 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 338 >gi|313158681|gb|EFR58070.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 389 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT + L+ G L ++ +LGH +++TTQIY + Sbjct: 341 FNPTIHLARHTFATTVTLTQGVPLETVSKMLGHKQITTTQIYAKI 385 >gi|328947984|ref|YP_004365321.1| integrase family protein [Treponema succinifaciens DSM 2489] gi|328448308|gb|AEB14024.1| integrase family protein [Treponema succinifaciens DSM 2489] Length = 273 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH +A + L D+ + ++GH + TT+IY + EI DQ Sbjct: 220 HSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQEIVDQ 269 >gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 393 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ AT LL+ G + + ILGH + T+IY + K+ +E Sbjct: 330 TYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLE 377 >gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 258 TLTTHVGRHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 300 >gi|167767651|ref|ZP_02439704.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1] gi|167710668|gb|EDS21247.1| hypothetical protein CLOSS21_02184 [Clostridium sp. SS2/1] gi|291560785|emb|CBL39585.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 397 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13] gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13] gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] Length = 290 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 +T RHSFA HLL NG + + +Q +LG+ ++ +Y + +N++++ IY + HP Sbjct: 235 NTFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHP 288 >gi|317501727|ref|ZP_07959915.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896875|gb|EFV18958.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 300 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 245 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 279 >gi|300855859|ref|YP_003780843.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] gi|300435974|gb|ADK15741.1| putative integrase/recombinase [Clostridium ljungdahlii DSM 13528] Length = 199 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+++H+ A HL + D++ +Q LGH ++ T+IY +K+ ++Y + Sbjct: 142 HSIKHTTAVHLAESDMDIKELQWWLGHKSVTNTEIYFQFTTKQQEKMYSK 191 >gi|284031277|ref|YP_003381208.1| integrase family protein [Kribbella flavida DSM 17836] gi|283810570|gb|ADB32409.1| integrase family protein [Kribbella flavida DSM 17836] Length = 403 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRHS+A+ L+++G + +Q ++GH R +TT IYT+V Sbjct: 343 HDLRHSYASWLITSGVPVPDVQRVMGHERPTTTLAIYTHV 382 >gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] Length = 370 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H RH+FAT +L G + +Q +LGH ++TT+ IY++V + ++ Y Q Sbjct: 315 HLFRHTFATRMLQAGYLDQYVQQLLGHKSIATTKDIYSHVLDEMSLDAYLQ 365 >gi|325526292|gb|EGD03903.1| phage integrase family protein [Burkholderia sp. TJI49] Length = 381 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54 T HTLRH+FA+ L+ G L + +LGHS TQ Y N S++ +++ D Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 375 >gi|317121205|ref|YP_004101208.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591185|gb|ADU50481.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 318 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH----SRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+F T L G DL I+ +LGH + +TTQIY +V +R+ E ++ Sbjct: 261 SAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEK 316 >gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 420 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 12/66 (18%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-----------IY 53 H RH+F T + L G + ++ +LGH +++TTQIY + + +M E +Y Sbjct: 347 HIGRHTFGTTVTLEKGVPIETVSEMLGHKQITTTQIYAKLTANKMKEDVRLLTQRIGNLY 406 Query: 54 DQTHPS 59 + T P+ Sbjct: 407 ELTQPT 412 >gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 362 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + H LRHSFAT D+ ++ LGHS + TT IYT++ Sbjct: 301 SLSVHKLRHSFATRYHREINDVPKLRRQLGHSSIQTTMIYTHI 343 >gi|228912351|ref|ZP_04076045.1| Phage integrase [Bacillus thuringiensis IBL 200] gi|228847299|gb|EEM92259.1| Phage integrase [Bacillus thuringiensis IBL 200] Length = 319 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 262 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 306 >gi|332876677|ref|ZP_08444436.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685382|gb|EGJ58220.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 219 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+AT + L+NG + ++ +LGHS + TQ Y V Sbjct: 158 TTHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 199 >gi|331665962|ref|ZP_08366856.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] gi|331057013|gb|EGI29007.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] Length = 119 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 60 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 110 >gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 379 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S H R ++AT L D++ +QS+LGHS ++TT IYT+V Sbjct: 315 SLNLHDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTHV 358 >gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 404 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKL 386 >gi|260912331|ref|ZP_05918880.1| tyrosine recombinase xerC [Prevotella sp. oral taxon 472 str. F0295] gi|260633512|gb|EEX51653.1| tyrosine recombinase xerC [Prevotella sp. oral taxon 472 str. F0295] Length = 58 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT ++ G D+ + +LGH+ + TT+IY +V Sbjct: 3 HCTRHTFATLTITAGADIFTTSKLLGHTNVHTTEIYADV 41 >gi|156744303|ref|YP_001434432.1| integron integrase [Roseiflexus castenholzii DSM 13941] gi|156235631|gb|ABU60414.1| integron integrase [Roseiflexus castenholzii DSM 13941] Length = 318 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 20/29 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T HT RH FATH+ G D+R++Q + GH Sbjct: 269 TCHTFRHRFATHVREAGDDMRTVQDLPGH 297 >gi|89098276|ref|ZP_01171161.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89087133|gb|EAR66249.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 389 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 S + H LRH++ T+L GD+ + LGHS ST +Y+N + ++ Sbjct: 329 SMSPHKLRHTYGTNLWEETGDIHLLMRQLGHSSTSTAALYSNPDQEK 375 >gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 405 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+FAT+ L+NG + + ++ HS + TQIY + S+ + + +Q Sbjct: 353 HLSRHTFATNALNNGMRIEYVSKLMDHSDIGITQIYAKIISEELDKAVEQ 402 >gi|229070616|ref|ZP_04203854.1| Phage integrase [Bacillus cereus F65185] gi|228712521|gb|EEL64458.1| Phage integrase [Bacillus cereus F65185] Length = 351 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 294 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 338 >gi|210612842|ref|ZP_03289495.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787] gi|210151395|gb|EEA82403.1| hypothetical protein CLONEX_01697 [Clostridium nexile DSM 1787] Length = 409 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 354 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 388 >gi|53716946|ref|YP_105717.1| phage integrase family protein [Burkholderia mallei ATCC 23344] gi|121596450|ref|YP_989655.1| phage integrase family protein [Burkholderia mallei SAVP1] gi|124381592|ref|YP_001024200.1| phage integrase family protein [Burkholderia mallei NCTC 10229] gi|126446520|ref|YP_001078394.1| phage integrase family protein [Burkholderia mallei NCTC 10247] gi|167002300|ref|ZP_02268090.1| site-specific recombinase, phage integrase family [Burkholderia mallei PRL-20] gi|238562796|ref|ZP_00439829.2| site-specific recombinase, phage integrase family [Burkholderia mallei GB8 horse 4] gi|254174529|ref|ZP_04881191.1| phage integrase family protein [Burkholderia mallei ATCC 10399] gi|254356822|ref|ZP_04973097.1| site-specific recombinase, phage integrase family [Burkholderia mallei 2002721280] gi|52422916|gb|AAU46486.1| phage integrase family protein [Burkholderia mallei ATCC 23344] gi|121224248|gb|ABM47779.1| phage integrase family protein [Burkholderia mallei SAVP1] gi|124289612|gb|ABM98881.1| phage integrase family protein [Burkholderia mallei NCTC 10229] gi|126239374|gb|ABO02486.1| phage integrase family protein [Burkholderia mallei NCTC 10247] gi|148025849|gb|EDK83972.1| site-specific recombinase, phage integrase family [Burkholderia mallei 2002721280] gi|160695575|gb|EDP85545.1| phage integrase family protein [Burkholderia mallei ATCC 10399] gi|238521889|gb|EEP85337.1| site-specific recombinase, phage integrase family [Burkholderia mallei GB8 horse 4] gi|243062035|gb|EES44221.1| site-specific recombinase, phage integrase family [Burkholderia mallei PRL-20] Length = 565 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ ATH L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 507 SPHWMRHTHATHALARGAELIMVRDNLRHASISTTSTYLHGDEIQRARQFDQ 558 >gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6] gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6] Length = 279 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 RH+ AT +++NG D+R ++ +L H + TT Y +V K + E Y+Q Sbjct: 229 RHTPATLMIANGCDIRIVKELLRHRDIRTTLRYAHVADKTLRERYNQC 276 >gi|291484295|dbj|BAI85370.1| hypothetical protein BSNT_02803 [Bacillus subtilis subsp. natto BEST195] Length = 389 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSK 47 H LRH+ A LL +G D++ IQ LGH S + T +Y++++ K Sbjct: 326 HALRHTHAVLLLESGADMKYIQERLGHKSMMVTADVYSHISKK 368 >gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] Length = 297 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S Sbjct: 221 TYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 263 >gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136] gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136] Length = 379 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++AT L+ G D+ +I+++LGH + STT YT V Sbjct: 312 HCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKV 350 >gi|319763375|ref|YP_004127312.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317117936|gb|ADV00425.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 207 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205 >gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 379 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH AT LLS + +Q ILGHS +STT IY++V + Q H + Q D Sbjct: 315 HDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVLPSMQADAMKQLHSAFKQDD 374 >gi|229187942|ref|ZP_04315047.1| Integrase [Bacillus cereus BGSC 6E1] gi|228595539|gb|EEK53254.1| Integrase [Bacillus cereus BGSC 6E1] Length = 116 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+ Sbjct: 74 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINN 116 >gi|227818844|ref|YP_002822815.1| phage integrase family protein [Sinorhizobium fredii NGR234] gi|36959102|gb|AAQ87527.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|227337843|gb|ACP22062.1| phage integrase family protein [Sinorhizobium fredii NGR234] Length = 183 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + A H+ G+LR++Q +LGH +L +T Y + + I +Q Sbjct: 131 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTVQYLGIEVDDALAISEQVE 182 >gi|228925131|ref|ZP_04088241.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834470|gb|EEM79999.1| Phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 360 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 303 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTRR 347 >gi|189036180|gb|ACD75440.1| AMDV4_11 [uncultured virus] Length = 210 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 AH RH+FA + + L +Q LGHS + TT IYT + Sbjct: 158 AHKFRHTFAVKAIMDNVPLNVLQQWLGHSSIFTTSIYTQI 197 >gi|227819857|ref|YP_002823828.1| phage integrase family protein [Sinorhizobium fredii NGR234] gi|36958778|gb|AAQ87246.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|227338856|gb|ACP23075.1| phage integrase family protein [Sinorhizobium fredii NGR234] Length = 198 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + A H+ G+LR++Q +LGH +L +T Y + + I +Q Sbjct: 146 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTVQYLGIEVDDALAISEQVE 197 >gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 311 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRHS AT L++ G + ++ LGH+ TTQIY Sbjct: 253 HQLRHSHATELINAGVSIEVVRKRLGHASTETTQIY 288 >gi|107027627|ref|YP_625138.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|105897001|gb|ABF80165.1| phage integrase [Burkholderia cenocepacia AU 1054] Length = 565 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+ ATH L+ G +L ++ L H+ +STT Y + + + +D+ S + K Sbjct: 506 SPHWIRHTHATHALARGAELIMVRDNLRHASISTTSTYLHSDEAQRARQFDRAFCSRSSK 565 >gi|89894317|ref|YP_517804.1| hypothetical protein DSY1571 [Desulfitobacterium hafniense Y51] gi|219668726|ref|YP_002459161.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|89333765|dbj|BAE83360.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538986|gb|ACL20725.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 327 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH LR +FAT LL +L +Q LGHS TT+IY V +++ D Sbjct: 272 SAHKLRSTFATLLLRETENLAIVQDALGHSDPRTTRIYAKVLDEQLRRAAD 322 >gi|331270979|ref|YP_004385690.1| putative integrase/recombinase [Clostridium botulinum BKT015925] gi|329127371|gb|AEB77315.1| putative integrase/recombinase, putative [Clostridium botulinum BKT015925] Length = 272 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH F +L+ G + ++ + GH+ + TT IYT + K+++++ +Q Sbjct: 222 HAFRHLFCMNLVDKGIPIDVVKDLAGHASILTTNIYTRRSKKQLLDVINQ 271 >gi|291514097|emb|CBK63307.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 414 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ RH+FAT + LS G + +I +LGH + TTQIY + Sbjct: 341 TFHSARHTFATTITLSQGMAIETISKLLGHKNIRTTQIYATI 382 >gi|116693660|ref|YP_839193.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116651660|gb|ABK12300.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 565 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+ ATH L+ G +L ++ L H+ +STT Y + + + +D+ S + K Sbjct: 506 SPHWIRHTHATHALARGAELIMVRDNLRHASISTTSTYLHSDEAQRARQFDRAFCSRSSK 565 >gi|124266920|ref|YP_001020924.1| phage integrase family protein [Methylibium petroleiphilum PM1] gi|124259695|gb|ABM94689.1| phage integrase family protein [Methylibium petroleiphilum PM1] Length = 207 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205 >gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 397 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 376 >gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001] gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001] Length = 570 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 29/45 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H +RH+ ATH L +G +L +++ L H+ +STT +Y + + + Sbjct: 510 SPHWMRHTHATHALEHGAELTTVRDNLRHASISTTSLYLHADDAK 554 >gi|237715509|ref|ZP_04545990.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|229444218|gb|EEO50009.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] Length = 301 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ T H RH+FA + G L ++Q +LGH + +TQ+Y + + ++ E D+ Sbjct: 234 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 288 >gi|299822665|ref|ZP_07054551.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816194|gb|EFI83432.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 209 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H RH +A LSNG DL +Q +LGH +STT Sbjct: 148 HKFRHFYAVQSLSNGLDLFFVQRVLGHKSVSTT 180 >gi|228918167|ref|ZP_04081671.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841447|gb|EEM86586.1| Integrase-recombinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 390 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048] Length = 330 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 26/44 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RH+FA + G ++ +Q+ILGH+ + + Y N+ Sbjct: 264 VRCSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYVNL 307 >gi|227500239|ref|ZP_03930308.1| possible phage integrase [Anaerococcus tetradius ATCC 35098] gi|227217629|gb|EEI82938.1| possible phage integrase [Anaerococcus tetradius ATCC 35098] Length = 353 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H LRH+ A+ L ++G ++ +Q+ LGHSR TT IY +V K Sbjct: 292 TLHDLRHTHASLLFASGRSVKYVQARLGHSRAETTMNIYVHVTQKE 337 >gi|333031241|ref|ZP_08459302.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|332741838|gb|EGJ72320.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 406 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+ G + ++ +LGH+ + TTQIY + ++++ Sbjct: 341 TFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKI 387 >gi|302384655|ref|YP_003820477.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195283|gb|ADL02854.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 386 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H +RH+FAT L G D++++ ILGHS +S T Sbjct: 313 HAIRHTFATRALELGIDIKTLSEILGHSNVSIT 345 >gi|299145293|ref|ZP_07038361.1| integrase [Bacteroides sp. 3_1_23] gi|298515784|gb|EFI39665.1| integrase [Bacteroides sp. 3_1_23] Length = 409 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FA + G L ++Q +LGH+ + +TQIY + + ++ E D+ Sbjct: 342 VEVTPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQIYAELINPKVGEDTDK 396 >gi|330011068|ref|ZP_08306980.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3] gi|158267620|gb|ABW24951.1| FimB [Klebsiella pneumoniae] gi|257479867|gb|ACV60170.1| FimB [Klebsiella pneumoniae] gi|328534299|gb|EGF60912.1| type 1 fimbriae regulatory protein FimB [Klebsiella sp. MS 92-3] Length = 209 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS L + G D R IQ LGH + T YT N+ R I+D Sbjct: 149 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 197 >gi|332826344|gb|EGJ99187.1| hypothetical protein HMPREF9455_00511 [Dysgonomonas gadei ATCC BAA-286] Length = 410 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+F T L +S G + ++ ++GH+ + TTQIY + +++ MEI Sbjct: 342 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDMEI 394 >gi|328542290|ref|YP_004302399.1| integrase family protein [polymorphum gilvum SL003B-26A1] gi|326412039|gb|ADZ69102.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 194 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM-EIYD 54 TA LRH F L G + +Q LGH++L+TT IY +RM +++D Sbjct: 139 ATAKGLRHGFGVAALERGIPITLLQKWLGHAKLATTAIYGDAVGAEERRMARKLWD 194 >gi|153808327|ref|ZP_01960995.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185] gi|149129230|gb|EDM20446.1| hypothetical protein BACCAC_02620 [Bacteroides caccae ATCC 43185] Length = 409 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T + RHSFAT L +G ++ I LGH+ LSTTQ Y + Sbjct: 352 IPITTYVARHSFATVLKRSGVNISIISEALGHTNLSTTQYYLD 394 >gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] Length = 403 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+LL G D +++Q + GH TT IY V + +++D + + Q Sbjct: 340 TPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSAFHQ 399 >gi|126729757|ref|ZP_01745570.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37] gi|126709876|gb|EBA08929.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37] Length = 364 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT +L +L+ + +LGHS ++TT Y +V Sbjct: 292 HDLRHTFATRMLRQTQNLKLVSRLLGHSEITTTSRYAHV 330 >gi|325002341|ref|ZP_08123453.1| integrase family protein [Pseudonocardia sp. P1] Length = 79 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKRMMEIYDQ 55 H LRHS+AT L+ +G +Q +LGH R STT +YT +S R+++ D Sbjct: 15 HDLRHSYATWLVDDGVPPNMVQRVLGHERSSTTLDLYTRRTDSSDRILQALDD 67 >gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 350 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ A+ +L G D+R++ +ILGHS L YT++ ++ ++ D+ Sbjct: 294 HDLRHTAASQMLMAGTDIRTLAAILGHSTLQMVLRYTHLLNEHKLKAVDR 343 >gi|268609765|ref|ZP_06143492.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 372 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 25/33 (75%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+FA+ + + G D++++ +LGHS +S T Sbjct: 319 HSLRHTFASRMFAEGVDVKTVSEVLGHSDVSIT 351 >gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM 15897] gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM 15897] Length = 417 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+LRH+ A+ LL G +L I SILGHS T IY + ++ E Sbjct: 357 HSLRHTSASMLLDAGVELPVITSILGHSSTDITSIYLKTDLDKLKE 402 >gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like protein [Cupriavidus metallidurans CH34] Length = 336 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+ A HLL +G ++ I+ LGH L TT Y + + E P + Sbjct: 258 TPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVAGV 317 Query: 64 DKK 66 +K Sbjct: 318 PRK 320 >gi|300779338|ref|ZP_07089196.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300504848|gb|EFK35988.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 407 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LSNG + S+ +LGH + TTQ Y + ++ E Sbjct: 345 TYHIARHTFATTVTLSNGVSIESVSKMLGHKSIKTTQHYAKILDSKVSE 393 >gi|85859016|ref|YP_461218.1| phage integrase family protein [Syntrophus aciditrophicus SB] gi|85722107|gb|ABC77050.1| phage integrase family protein [Syntrophus aciditrophicus SB] Length = 316 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH +A+ L L I ++LGHS + TTQIY Sbjct: 273 TWHNLRHKYASELSKRNVPLFEIMNLLGHSNMKTTQIY 310 >gi|296447605|ref|ZP_06889525.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296254870|gb|EFH01977.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 471 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRH+ + S+G L +ILGH+ L +T IY +V +E Sbjct: 358 TPHTLRHTLGSTATSSGEALALTGAILGHANLRSTAIYAHVQRDPSLE 405 >gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 409 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+ L G D+ + + GH +ST Q Y ++ Sbjct: 341 HTLRHTFASWLAQAGADIHHLMELTGHKSISTMQRYAHL 379 >gi|153809550|ref|ZP_01962218.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185] gi|149127795|gb|EDM19019.1| hypothetical protein BACCAC_03868 [Bacteroides caccae ATCC 43185] Length = 447 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T + RHSFAT + LSNG + +I ++GH + TTQIY + Sbjct: 353 TFYQARHSFATLICLSNGVPIETISKMMGHYSIRTTQIYAEI 394 >gi|221064674|ref|ZP_03540779.1| integrase family protein [Comamonas testosteroni KF-1] gi|220709697|gb|EED65065.1| integrase family protein [Comamonas testosteroni KF-1] Length = 226 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 33/50 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++H+ R +FA+ +LS GD+ ++ +LGHS + +Q Y +V+ + +++ Sbjct: 173 SSHSGRRTFASKVLSTTGDMDTVAQLLGHSSIDCSQRYVDVDPVTLEDMF 222 >gi|328542226|ref|YP_004302335.1| integrase family protein [polymorphum gilvum SL003B-26A1] gi|326411976|gb|ADZ69039.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 194 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM-EIYD 54 TA LRH F L G + +Q LGH++L+TT IY +RM +++D Sbjct: 139 ATAKGLRHGFGVAALERGIPITLLQKWLGHAKLATTAIYGDAVGAEERRMARKLWD 194 >gi|317054724|ref|YP_004103192.1| hypothetical protein pAMI7_p13 [Paracoccus aminophilus] gi|294869156|gb|ADF47148.1| hypothetical protein [Paracoccus aminophilus] Length = 209 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + TH+ G+LR+ Q +LGH+ + +T+ Y ++I + H Sbjct: 157 HSLRRTLPTHIHQQTGNLRAAQLLLGHASIESTKDYIGTEQAEALDIARRFH 208 >gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973] gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973] Length = 392 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L G + SI ++GH+ +++TQIY + ++ Sbjct: 336 HVGRHSFGTLTLEAGVPIESIAKMMGHASIASTQIYAQITDSKI 379 >gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 343 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S Sbjct: 288 HILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 328 >gi|296163748|ref|ZP_06846456.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886009|gb|EFG65919.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 331 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 24/44 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S T HTLRH A LL +G DL I LGH TT IY + + Sbjct: 254 SVTPHTLRHGAAMSLLHHGVDLSVIALWLGHESSETTHIYLHAD 297 >gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122] gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122] Length = 353 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T LRH+FAT ++ G D+R++ S+LGH+ ++ T IY + Sbjct: 261 TFRDLRHTFATFMVGAGVDVRTVASLLGHANVAMTLNIYAEAD 303 >gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + + HT RH+ A + NGGD +++ ILGHS L Y + S Sbjct: 258 VRVSPHTFRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFS 303 >gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T] gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T] Length = 411 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 22/41 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 AH LRH+ AT +L G L I +L H TT IY V+ Sbjct: 355 AHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVD 395 >gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803] Length = 412 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT + L+NG + S+ +LGH+ L TTQ Y + Sbjct: 354 TFHLARHTFATTVTLTNGVPIESVSKMLGHTNLKTTQHYAKI 395 >gi|322836431|ref|YP_004215808.1| integrase [Rahnella sp. Y9602] gi|321170984|gb|ADW76681.1| integrase family protein [Rahnella sp. Y9602] Length = 257 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + RHSFA H+L N + +Q+++GH +T++YT + Sbjct: 182 SFRHSFAMHILFNRIHPKVLQTLMGHKSFKSTEVYTKL 219 >gi|57506012|ref|ZP_00371936.1| site-specific recombinase, phage integrase family [Campylobacter upsaliensis RM3195] gi|57015812|gb|EAL52602.1| site-specific recombinase, phage integrase family [Campylobacter upsaliensis RM3195] Length = 314 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS A L S +L IQ IL H+ + TT IY NS+ Sbjct: 263 HLLRHSLAMKLTSQNINLVVIQKILRHTSMQTTTIYAKANSE 304 >gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 335 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHS A +L D+R + LGH+ + TT+IY ++ +E + P Sbjct: 252 TLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMDPSEKLEAVEAVLPPAL 311 Query: 62 QKDK 65 ++ + Sbjct: 312 RRGR 315 >gi|322836404|ref|YP_004215781.1| integrase [Rahnella sp. Y9602] gi|321170957|gb|ADW76654.1| integrase family protein [Rahnella sp. Y9602] Length = 263 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+A H L+ +Q++LGH + +T++YT V Sbjct: 186 TPHVFRHSYAMHHCYQHTPLKVLQALLGHEKAESTEVYTRV 226 >gi|317500130|ref|ZP_07958363.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316898419|gb|EFV20457.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 207 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 152 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 186 >gi|325106214|ref|YP_004275868.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324975062|gb|ADY54046.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 405 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+FAT+ L+NG + + +L HS + TQ+Y + S+ + Sbjct: 353 HLSRHTFATNALNNGMRIEYVSKLLDHSSIRQTQVYAKIVSEEL 396 >gi|257879448|ref|ZP_05659101.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|323142571|ref|ZP_08077387.1| site-specific recombinase, phage integrase family [Phascolarctobacterium sp. YIT 12067] gi|257813676|gb|EEV42434.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|322413004|gb|EFY03907.1| site-specific recombinase, phage integrase family [Phascolarctobacterium sp. YIT 12067] Length = 378 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 25/37 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 S H+LRH+FAT + G D++S+ ILGH+ ++ T Sbjct: 316 SANYHSLRHTFATRCIELGFDVKSLSEILGHASVNIT 352 >gi|297565034|ref|YP_003684006.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296849483|gb|ADH62498.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 251 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 24/48 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHS A LL G L +Q LGH TTQIY + + E Y Sbjct: 197 HLLRHSVAQILLDRGMPLEQLQKFLGHQDPKTTQIYAESSLASVGESY 244 >gi|88800923|ref|ZP_01116476.1| resolvase [Reinekea sp. MED297] gi|88776368|gb|EAR07590.1| resolvase [Reinekea sp. MED297] Length = 262 Score = 38.5 bits (88), Expect = 0.35, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHSFA + L +G D++ I LGH+ + T+ Y V S Sbjct: 203 LRVTPHTFRHSFAVNALLHGRDIQVISGWLGHASVRETERYLKVLS 248 >gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 360 Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+ A+H L G DL ++ LGH + TT+ Y + + Y P Sbjct: 302 SPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLHAQPGKSSSYYVDEAP 356 >gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp. oral taxon 078 str. F0262] Length = 348 Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H+LRH+F T + G +++ IQ LGH+ +STT IY +V Sbjct: 270 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTTLNIYADV 311 >gi|237725666|ref|ZP_04556147.1| predicted protein [Bacteroides sp. D4] gi|229435474|gb|EEO45551.1| predicted protein [Bacteroides dorei 5_1_36/D4] Length = 71 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 M ++H RHSF T L+S + SI ++GHS + TTQ Y + ++ + D+ Sbjct: 1 MLMSSHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 55 >gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] Length = 401 Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T HTLRH+ A+ L+NG DL+++ LGH+ +TT +IY +V Sbjct: 333 TFHTLRHTHASWCLANGVDLKTLSERLGHADEATTLRIYAHV 374 >gi|149913599|ref|ZP_01902132.1| Integrase [Roseobacter sp. AzwK-3b] gi|149812719|gb|EDM72548.1| Integrase [Roseobacter sp. AzwK-3b] Length = 196 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 ++H+ R ++ T L + G +R + + GHS +STTQ Y +VNS+++ E Sbjct: 143 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSEQLSE 191 >gi|119714859|ref|YP_921824.1| phage integrase family protein [Nocardioides sp. JS614] gi|119535520|gb|ABL80137.1| phage integrase family protein [Nocardioides sp. JS614] Length = 412 Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRH+ A +L+ GG L + +LGH TT Y V+ + E+ Sbjct: 356 AHRLRHTAAMDVLAAGGTLSEAKELLGHVYTVTTMTYAKVDLASLREL 403 >gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 416 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRHS A+ ++ NG ++ +Q LGHS STT IY +++ K Sbjct: 354 HDLRHSCASLMVMNGVSMKQVQEWLGHSTFSTTADIYAHLDYK 396 >gi|294620376|ref|ZP_06699685.1| phage integrase/recombinase [Enterococcus faecium E1679] gi|291593289|gb|EFF24854.1| phage integrase/recombinase [Enterococcus faecium E1679] Length = 406 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH++AT G ++ I + L HS +STT+IY N ++ D+T QK Sbjct: 348 SPHKLRHTYATIARQGGANMNQISNALTHSDISTTKIYVNTP-----DVVDKTVFEAFQK 402 Query: 64 DKKN 67 KN Sbjct: 403 GLKN 406 >gi|256829123|ref|YP_003157851.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256578299|gb|ACU89435.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 392 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH FA+HL S+G L + ++L H LS T+ Y +++ + + Sbjct: 323 HGLRHHFASHLASSGASLYEVGTLLTHGDLSVTKRYAHLSDQAL 366 >gi|222080269|ref|YP_002540133.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738914|gb|ACM39693.1| integrase/recombinase [Agrobacterium vitis S4] Length = 325 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+LRH+ AT L+ G + I ILGH + TT +Y Sbjct: 267 HSLRHTLATRLMEGGTPIEEIADILGHQSVGTTGVY 302 >gi|152971804|ref|YP_001336913.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956653|gb|ABR78683.1| recombinase involved in phase variation; regulator for fimA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 201 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS L + G D R IQ LGH + T YT N+ R I+D Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 189 >gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117] gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117] Length = 360 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F + L ++G DL ++ +LGH+ ++TT Y ++ + YD Sbjct: 302 HALRHTFGSALAASGVDLSIMRELLGHAHVNTTARYIHLVPAHVKSEYD 350 >gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii] gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii] Length = 373 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FAT L+ G DL +Q +LGH TQ Y + Sbjct: 282 HDLRHTFATRLVQAGVDLYKVQRLLGHKSPLMTQRYAH 319 >gi|281413584|ref|ZP_06245326.1| hypothetical protein MlutN2_00010 [Micrococcus luteus NCTC 2665] Length = 37 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 22/33 (66%) Query: 26 IQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 2 VQELLGHASVTTTQVYTLVTVDSLREVYSAAHP 34 >gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 411 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + LRH FAT +L+NG DL ++ ++GHS + T Sbjct: 354 YDLRHLFATTMLANGADLAAVSKLMGHSTVKMT 386 >gi|229170806|ref|ZP_04298420.1| Integrase-recombinase [Bacillus cereus AH621] gi|228612644|gb|EEK69853.1| Integrase-recombinase [Bacillus cereus AH621] Length = 314 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 256 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 301 >gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 377 Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + G +R +Q LGHS + T Y ++ Sbjct: 314 HVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHL 352 >gi|312899239|ref|ZP_07758576.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] gi|311293594|gb|EFQ72150.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] Length = 406 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH++AT G ++ I + L HS +STT+IY N ++ D+T QK Sbjct: 348 SPHKLRHTYATIARQGGANMNQISNALTHSDISTTKIYVNTP-----DVVDKTVFEAFQK 402 Query: 64 DKKN 67 KN Sbjct: 403 GLKN 406 >gi|311233617|gb|ADP86471.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 395 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 29/40 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+FA+ L+ +G L ++ ++GH+ L T+ Y++++ Sbjct: 339 HTLRHTFASWLVQDGTPLYTVAELMGHTTLEMTKRYSHLS 378 >gi|295090449|emb|CBK76556.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 413 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH+F +++ +G + +++Q I+GHS +S T +YT++N Sbjct: 342 VTPHVCRHTFCSNMAKSGMNPKTLQYIMGHSDISVTLNVYTHLN 385 >gi|262039897|ref|ZP_06013169.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042728|gb|EEW43727.1| type 1 fimbriae regulatory protein FimB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 133 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS L + G D R IQ LGH + T YT N+ R I+D Sbjct: 73 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 121 >gi|238896396|ref|YP_002921134.1| tyrosine recombinase [Klebsiella pneumoniae NTUH-K2044] gi|238548716|dbj|BAH65067.1| site-specific recombinase involved in flagellar phase switching/type 1 fimbriae regulatory protein with FimE [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 201 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS L + G D R IQ LGH + T YT N+ R I+D Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWD 189 >gi|221213692|ref|ZP_03586666.1| phage integrase [Burkholderia multivorans CGD1] gi|221166481|gb|EED98953.1| phage integrase [Burkholderia multivorans CGD1] Length = 173 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT----NVNSKRMMEIYD 54 T HTLRH+FA+ L+ G L + +LGHS TQ Y N S++ +++ D Sbjct: 111 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPNDASRKAVKVID 166 >gi|209901196|ref|YP_002286977.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209574147|gb|ACI63035.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] Length = 547 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H +RHS A+H L+ G L +++ L H+ ++TT +Y Sbjct: 484 TPHWMRHSHASHALARGAQLTAVRDNLRHASIATTSMY 521 >gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99] gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99] Length = 389 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEI---YDQTHPS 59 T H LRH++A+ +G DLR +Q +GHS + T IY+++ + + ++ DQ H + Sbjct: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYADELDQVATNLDQLHAT 369 Query: 60 ITQ 62 Q Sbjct: 370 EIQ 372 >gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] Length = 391 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H+LRH+ A+ L++ G D+R++ +LGHS+ STT IY + K E ++ Sbjct: 332 SVHSLRHTNASLLIAQGVDVRTVAGLLGHSQPSTTLDIYAHAFDKTKREAQEK 384 >gi|225407933|ref|ZP_03761122.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme DSM 15981] gi|225042527|gb|EEG52773.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme DSM 15981] Length = 432 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++ ++LLS G + +Q +LGH+ +STT Sbjct: 374 HQLRHTYTSNLLSGGAAPKDVQELLGHADVSTT 406 >gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 331 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 AH RHS A L+ +G + ++Q +LGH L TT IY + Sbjct: 263 AHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVKATA 304 >gi|319891831|ref|YP_004148706.1| Integrase [Staphylococcus pseudintermedius HKU10-03] gi|317161527|gb|ADV05070.1| Integrase [Staphylococcus pseudintermedius HKU10-03] Length = 349 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|322436150|ref|YP_004218362.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163877|gb|ADW69582.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 411 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H RH+ A +L G+L+ Q ILGH+ +STT IYT V+ Sbjct: 312 HLFRHTLAQGVLDLTGNLKIAQEILGHAHISTTADIYTRVD 352 >gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 345 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT + ++G + +LGH L+ +Q Y V + + + Sbjct: 263 HALRHTFATRVGASGASAMEVMELLGHRSLNASQGYLGVTGRELRD 308 >gi|149916579|ref|ZP_01905094.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809553|gb|EDM69412.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R SF T+L + +R + + GHS + TTQ Y +VN K+M Sbjct: 135 ASSHSGRRSFITNLAAKSVSVRVLAELAGHSSIQTTQRYIDVNPKQM 181 >gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 402 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+LL G + +++Q + GH TT IY V + E+++ + ++ Q Sbjct: 340 TPHQLRHTYITNLLYAGVNPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFEVVNDALHQ 399 Query: 63 K 63 + Sbjct: 400 R 400 >gi|255034688|ref|YP_003085309.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947444|gb|ACT92144.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 436 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 24/46 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH FA +L+NG L + +LGH + TT Y V R+ E Sbjct: 371 HDARHFFADMMLNNGVPLEDVSKMLGHRNIRTTMRYCRVRKSRISE 416 >gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 377 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRHS A+ LL+ G + +Q LGHS + T IY++V + E D+ +I Sbjct: 320 HTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVAPAQQREAADKLGQAI 375 >gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136] gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136] Length = 411 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 342 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 387 >gi|95930935|ref|ZP_01313665.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95133061|gb|EAT14730.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 207 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 HTLRH+ THL+ G DL +++ I GH L + Y + N + + D Sbjct: 149 HTLRHTAITHLVQAGVDLPTVKRISGHKTLIMVERYAHQNGEPIQAAMD 197 >gi|298388014|ref|ZP_06997561.1| integrase [Bacteroides sp. 1_1_14] gi|298259194|gb|EFI02071.1| integrase [Bacteroides sp. 1_1_14] Length = 342 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+F T L +S G + ++ ++GH+ + TTQIY + +++ MEI Sbjct: 274 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDMEI 326 >gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4] Length = 316 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFA + G D+ ++Q +L HS L T+ Y ++ + E D+ +P Sbjct: 256 SCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNDKYNP 310 >gi|196048003|ref|ZP_03115181.1| integrase-recombinase [Bacillus cereus 03BB108] gi|196021259|gb|EDX59988.1| integrase-recombinase [Bacillus cereus 03BB108] Length = 380 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 23/45 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH FA N +L IQ LGH TT+IY + KR Sbjct: 323 TPHTFRHGFAIIAAENNVELLRIQQTLGHESPMTTKIYLEKSMKR 367 >gi|160931503|ref|ZP_02078899.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753] gi|160934558|ref|ZP_02081944.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753] gi|311063707|ref|YP_003970432.1| DNA integration/recombination/inversion protein [Bifidobacterium bifidum PRL2010] gi|156866011|gb|EDO59383.1| hypothetical protein CLOLEP_03431 [Clostridium leptum DSM 753] gi|156869568|gb|EDO62940.1| hypothetical protein CLOLEP_00336 [Clostridium leptum DSM 753] gi|310866026|gb|ADP35395.1| DNA integration/recombination/inversion protein [Bifidobacterium bifidum PRL2010] Length = 397 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 27/38 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T++ + G + +++Q I+GHS ++ T Y Sbjct: 342 TPHTLRHTFCTNMANAGMNPKALQYIMGHSNITMTLNY 379 >gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 367 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH++AT LL G +Q +LGH+ ++TT Sbjct: 304 TVHMLRHTYATDLLRRGVPAEVVQKLLGHASVTTT 338 >gi|329965392|ref|ZP_08302316.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328522184|gb|EGF49298.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 410 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FA+ ++N L SI +LGH+ + TT+IY + Sbjct: 350 HIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388 >gi|313906110|ref|ZP_07839460.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469050|gb|EFR64402.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 316 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH+FAT+ ++ G D + + +LGHS ++ T Sbjct: 256 HTLRHTFATNCVAGGMDPKVLSELLGHSSVTIT 288 >gi|299142941|ref|ZP_07036067.1| site-specific recombinase, phage integrase family [Prevotella oris C735] gi|298575557|gb|EFI47437.1| site-specific recombinase, phage integrase family [Prevotella oris C735] Length = 308 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + D +++ +LGH+ ++TT + +Y HP++ QK + Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTT-----------LNLY--VHPNMEQKKR 297 >gi|269929227|ref|YP_003321548.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269788584|gb|ACZ40726.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 335 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH AT L+ ++Q+ILGH+ +TT+IY + + + E Y + Sbjct: 273 TPHSFRHGLATELVRRRVRESTVQTILGHASPTTTRIYVHKVAAEVAEEYQE 324 >gi|227551861|ref|ZP_03981910.1| phage integrase family site specific recombinase [Enterococcus faecium TX1330] gi|227179033|gb|EEI60005.1| phage integrase family site specific recombinase [Enterococcus faecium TX1330] Length = 409 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+FA G L I+ LGH +STTQ+Y +++ + +Q I ++ Sbjct: 344 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 403 Query: 64 DKK 66 KK Sbjct: 404 IKK 406 >gi|160874839|ref|YP_001554155.1| integrase family protein [Shewanella baltica OS195] gi|160860361|gb|ABX48895.1| integrase family protein [Shewanella baltica OS195] Length = 210 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H+LRH++ATH L G L +Q+ LGH + +T+ Y Sbjct: 145 SPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERY 182 >gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 404 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + ++++ ME+ Sbjct: 343 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNEKIRKDMEV 395 >gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 373 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+ + NGGDL + ++GH+ + T+ Y + + + + T DK Sbjct: 299 HDLRHTFASWYMMNGGDLYELAKLMGHANIKMTERYAKLGRAHISKTGNTAKVIWTMMDK 358 >gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 381 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH++A+ ++NG L I +LGHS+ TT Y ++ + +E+ D+ Sbjct: 321 HDLRHTYASTAVANGESLPMIGKLLGHSQPQTTARYAHLADIQAVEVADK 370 >gi|240169752|ref|ZP_04748411.1| integrase [Mycobacterium kansasii ATCC 12478] Length = 55 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHTLRH A+ ++R++Q++LGH + TT+ Y + Sbjct: 2 TAHTLRHRMASRAFHGSRNIRAVQALLGHESILTTERYVAI 42 >gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] Length = 336 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 284 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 323 >gi|190015183|ref|YP_001966733.1| putative integrase/recombinase [Bacillus cereus] gi|190015448|ref|YP_001967057.1| putative integrase/recombinase [Bacillus cereus] gi|218848491|ref|YP_002455116.1| phage integrase family protein [Bacillus cereus AH820] gi|116584859|gb|ABK00974.1| putative integrase/recombinase [Bacillus cereus] gi|116585129|gb|ABK01238.1| putative integrase/recombinase [Bacillus cereus] gi|218540542|gb|ACK92938.1| phage integrase family protein [Bacillus cereus AH820] Length = 347 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|307824713|ref|ZP_07654937.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307734367|gb|EFO05220.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 207 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + AT + +LR++Q +LGH++L +T Y + +EI +QT Sbjct: 155 HTMRRTKATLVYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEISEQTE 206 >gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] Length = 336 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H LRH+ AT + G D ++ ILGH L+TT+IYT++ S+ + Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNL 310 >gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 468 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RHS AT+LL G DL + +GHS ++TTQ Y Sbjct: 415 VSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRY 453 >gi|291295938|ref|YP_003507336.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290470897|gb|ADD28316.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 339 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH LRH+ T + DL + +LGH+ ++T+ IY ++ + E+ D+ Sbjct: 286 AHMLRHTAGTRIYKKSRDLHATARLLGHANVNTSAIYAKMDLAGLFEVVDR 336 >gi|212695061|ref|ZP_03303189.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855] gi|212662377|gb|EEB22951.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855] Length = 410 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH++AT + LSN + ++ +LGH + TTQIY + +++M Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKM 388 >gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 305] gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 305] Length = 561 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRHS A+H L+ G +L +++ L H+ +STT Y Sbjct: 505 SPHWLRHSHASHALARGAELITVRDNLRHASISTTSTY 542 >gi|148654999|ref|YP_001275204.1| integron integrase [Roseiflexus sp. RS-1] gi|148567109|gb|ABQ89254.1| integron integrase [Roseiflexus sp. RS-1] Length = 319 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TAHTLR +FA L G L IQ ++GH+ + TTQ Y Sbjct: 263 TAHTLRAAFAHRLKEAGYQLDDIQQLMGHADIRTTQHY 300 >gi|10956870|ref|NP_049090.1| putative phage type integrase/recombinase [Novosphingobium aromaticivorans] gi|146275536|ref|YP_001165697.1| phage integrase domain/SAM domain-containing protein [Novosphingobium aromaticivorans DSM 12444] gi|3378303|gb|AAD03886.1| putative phage type integrase/recombinase [Novosphingobium aromaticivorans] gi|145322227|gb|ABP64171.1| phage integrase domain protein SAM domain protein [Novosphingobium aromaticivorans DSM 12444] Length = 463 Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 23/63 (36%) Query: 4 TAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLSTTQI 40 + H LRHSFA H+L+ G L+ +Q +LGHS L+TT I Sbjct: 375 SPHQLRHSFAVHMLAMLIQRRLAEAAAPVGAMEGYRQLVGDPLQQVQRLLGHSSLATTSI 434 Query: 41 YTN 43 Y + Sbjct: 435 YLD 437 >gi|332829744|gb|EGK02390.1| hypothetical protein HMPREF9455_01660 [Dysgonomonas gadei ATCC BAA-286] Length = 453 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+H RH+ AT + LS G + ++ +LGHS ++TTQIY + + ++ Sbjct: 343 TSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKI 389 >gi|332799019|ref|YP_004460518.1| integrase family protein [Tepidanaerobacter sp. Re1] gi|332696754|gb|AEE91211.1| integrase family protein [Tepidanaerobacter sp. Re1] Length = 297 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T + LRHSFA L N G +Q +LGH+ + T+ Y ++ + E++ P Sbjct: 233 TPYQLRHSFALLFLRNKGSAFHLQQMLGHTTMEMTEKYVYLSKSDVDEVHYTASP 287 >gi|319938579|ref|ZP_08012969.1| integrase [Coprobacillus sp. 29_1] gi|319806251|gb|EFW02934.1| integrase [Coprobacillus sp. 29_1] Length = 88 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 33 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 67 >gi|319643438|ref|ZP_07998061.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A] gi|317384843|gb|EFV65799.1| hypothetical protein HMPREF9011_03662 [Bacteroides sp. 3_1_40A] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDKISEKI 401 >gi|312888228|ref|ZP_07747805.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299259|gb|EFQ76351.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 406 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+NG + S+ +LGH + TTQ Y + ++ E Sbjct: 347 TFHIARHTFATSVTLANGVSIESVSKMLGHKNIRTTQHYAKILDSKVSE 395 >gi|317055794|ref|YP_004104261.1| integrase family protein [Ruminococcus albus 7] gi|315448063|gb|ADU21627.1| integrase family protein [Ruminococcus albus 7] Length = 415 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 6/66 (9%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN----VNSKRMMEIYDQTHPSI 60 H+LRH+F T + G +++++Q ILGH+ + TT IY + + SK M+ +++ S+ Sbjct: 351 HSLRHTFTTRMCEAGVNIKAMQDILGHADVETTLGIYADATKELKSKEMIG-FEEYFKSL 409 Query: 61 TQKDKK 66 T +D + Sbjct: 410 TDEDAE 415 >gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|257887017|ref|ZP_05666670.1| site-specific recombinase [Enterococcus faecium 1,141,733] gi|257823071|gb|EEV50003.1| site-specific recombinase [Enterococcus faecium 1,141,733] Length = 391 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+FA G L I+ LGH +STTQ+Y +++ + +Q I ++ Sbjct: 326 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 385 Query: 64 DKK 66 KK Sbjct: 386 IKK 388 >gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B] gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B] Length = 335 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H R + AT LL+ G + +Q ILGH+ +TTQIY ++ + + Y Sbjct: 283 HKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEY 330 >gi|196048146|ref|ZP_03115323.1| phage integrase family protein [Bacillus cereus 03BB108] gi|196020883|gb|EDX59613.1| phage integrase family protein [Bacillus cereus 03BB108] Length = 348 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|167772512|ref|ZP_02444565.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM 17241] gi|167665615|gb|EDS09745.1| hypothetical protein ANACOL_03890 [Anaerotruncus colihominis DSM 17241] Length = 305 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMME 51 H LRH FA S DL + ILGH+ ++TT+IYT +R ME Sbjct: 250 HNLRHLFARTFYSLEKDLSRLADILGHTNVATTRIYTVESGAAHRRQME 298 >gi|217388371|ref|YP_002333400.1| intergrase [Enterococcus faecalis] gi|260559874|ref|ZP_05832053.1| integrase [Enterococcus faecium C68] gi|8100684|gb|AAF72368.1|AF192329_29 integrase [Enterococcus faecalis] gi|3243185|gb|AAC34799.1| integrase [Enterococcus faecium] gi|80973251|gb|ABB53357.1| Int [Eggerthella lenta] gi|80973262|gb|ABB53367.1| Int [Clostridium sp. MLG245] gi|80973273|gb|ABB53377.1| Int [Enterococcus faecium] gi|216409913|dbj|BAH02348.1| int [Enterococcus faecalis] gi|260074098|gb|EEW62421.1| integrase [Enterococcus faecium C68] Length = 397 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +TT H +RH+F T L + G + +++Q I+GHS ++ T Y Sbjct: 340 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379 >gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021] gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021] Length = 310 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S Sbjct: 255 HILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 295 >gi|293377828|ref|ZP_06624013.1| site-specific recombinase, phage integrase family [Enterococcus faecium PC4.1] gi|292643538|gb|EFF61663.1| site-specific recombinase, phage integrase family [Enterococcus faecium PC4.1] Length = 407 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+FA G L I+ LGH +STTQ+Y +++ + +Q I ++ Sbjct: 342 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 401 Query: 64 DKK 66 KK Sbjct: 402 IKK 404 >gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|325680591|ref|ZP_08160134.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324107728|gb|EGC02001.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 168 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRHS A+ LL+NG +++IQ LGHS + T Y++++ K Sbjct: 96 HDLRHSCASLLLANGVSMKAIQDWLGHSTFNVTANFYSHLDYK 138 >gi|257895547|ref|ZP_05675200.1| site-specific recombinase [Enterococcus faecium Com12] gi|257832112|gb|EEV58533.1| site-specific recombinase [Enterococcus faecium Com12] Length = 407 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+FA G L I+ LGH +STTQ+Y +++ + +Q I ++ Sbjct: 342 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 401 Query: 64 DKK 66 KK Sbjct: 402 IKK 404 >gi|253570838|ref|ZP_04848246.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384171|ref|ZP_06993732.1| integrase [Bacteroides sp. 1_1_14] gi|251839787|gb|EES67870.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298263775|gb|EFI06638.1| integrase [Bacteroides sp. 1_1_14] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA + G L ++Q +LGH + +TQIY + + ++ E D+ Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKVGEDTDK 396 >gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T] gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T] Length = 332 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 23/42 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ A LL G D I LGH + TTQIY + N Sbjct: 257 TPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIYLDAN 298 >gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC 43184] gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC 43184] Length = 415 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|332185091|ref|ZP_08386840.1| phage integrase family protein [Sphingomonas sp. S17] gi|332014815|gb|EGI56871.1| phage integrase family protein [Sphingomonas sp. S17] Length = 205 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 34/51 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A+ + G+LR++Q +LGH+++ +T Y V+ + +E+ ++T Sbjct: 153 HSLRRTKASIIYKATGNLRAVQILLGHAKIDSTVRYLGVDVEDALELAERT 203 >gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23] gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 336 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 284 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 323 >gi|289644059|ref|ZP_06476157.1| hypothetical protein FsymDgDRAFT_3417 [Frankia symbiont of Datisca glomerata] gi|289506140|gb|EFD27141.1| hypothetical protein FsymDgDRAFT_3417 [Frankia symbiont of Datisca glomerata] Length = 89 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+ AT + G D + IQ++LGH+ LSTT IY ++ Sbjct: 16 HALRHTAATMAYALGVDWKQIQAMLGHTMLSTTMDIYVDM 55 >gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565] gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216] gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216] Length = 409 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|55709836|gb|AAV58821.1| integrase [Clostridium sp. CCRI-9842] Length = 397 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +TT H +RH+F T L + G + +++Q I+GHS ++ T Y Sbjct: 340 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 379 >gi|17228174|ref|NP_484722.1| hypothetical protein asl0678 [Nostoc sp. PCC 7120] gi|25532108|pir||AE1891 hypothetical protein asl0678 [imported] - Nostoc sp. (strain PCC 7120) gi|17130024|dbj|BAB72636.1| asl0678 [Nostoc sp. PCC 7120] Length = 48 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 16/32 (50%), Positives = 22/32 (68%) Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ATHLL N D+R+ Q +LGH + T IYT++ Sbjct: 3 ATHLLQNSYDIRTFQELLGHKDVKITMIYTHI 34 >gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 404 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ +++ Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFER 392 >gi|253569479|ref|ZP_04846889.1| transposase [Bacteroides sp. 1_1_6] gi|251841498|gb|EES69579.1| transposase [Bacteroides sp. 1_1_6] Length = 415 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM 43017] gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM 43017] Length = 354 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H+LRH+ T L G D+ ++ I GH+ LSTT +Y + Sbjct: 297 TPHSLRHTALTVLARAGVDIATVAQIAGHASLSTTSVYMD 336 >gi|167763534|ref|ZP_02435661.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC 43183] gi|167698828|gb|EDS15407.1| hypothetical protein BACSTE_01909 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA + G L ++Q +LGH + +TQ+Y + + ++ E D+ I Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDKISEKI 401 >gi|157147898|ref|YP_001455217.1| tyrosine recombinase [Citrobacter koseri ATCC BAA-895] gi|157085103|gb|ABV14781.1| hypothetical protein CKO_03705 [Citrobacter koseri ATCC BAA-895] Length = 200 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R IQ LGH + T YT N+ R I+++T Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWNKT 191 >gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 411 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 395 >gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 1/2a F6854] gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria monocytogenes J0161] gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 1/2a F6854] Length = 387 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS A+ LL G +++ IQ+ILGHS + T Sbjct: 328 HDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 360 >gi|299148365|ref|ZP_07041427.1| integrase [Bacteroides sp. 3_1_23] gi|298513126|gb|EFI37013.1| integrase [Bacteroides sp. 3_1_23] Length = 118 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 9 RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 RH+FAT + LS+G + ++ +LGH+ + TTQIY + ++M+ Sbjct: 50 RHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMD 93 >gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 409 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 T H RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 340 TFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 385 >gi|293570573|ref|ZP_06681625.1| site-specific recombinase, phage integrase family [Enterococcus faecium E980] gi|291609361|gb|EFF38631.1| site-specific recombinase, phage integrase family [Enterococcus faecium E980] Length = 150 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+FA G L I+ LGH +STTQ+Y +++ + +Q I ++ Sbjct: 85 TVHDGRHTFAARTRQAGIPLEDIKDFLGHKDVSTTQVYAHISPEVKKRSMNQLENYIEEQ 144 Query: 64 DKK 66 KK Sbjct: 145 IKK 147 >gi|255034348|ref|YP_003084969.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947104|gb|ACT91804.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 436 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 24/46 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH FA +L+NG L + +LGH + TT Y V R+ E Sbjct: 371 HDARHFFADMMLNNGVPLEDVSKMLGHKNIRTTMRYCRVRKSRISE 416 >gi|209901048|ref|YP_002286830.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209901058|ref|YP_002286840.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209901077|ref|YP_002286859.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|294496696|ref|YP_003560389.1| resolvase [Klebsiella pneumoniae] gi|167077384|gb|ABZ10915.1| resolvase [Klebsiella pneumoniae] gi|167077391|gb|ABZ10921.1| resolvase [Klebsiella pneumoniae] gi|167077398|gb|ABZ10927.1| resolvase [Pseudomonas aeruginosa] gi|167077405|gb|ABZ10933.1| resolvase [Klebsiella pneumoniae] gi|209574205|gb|ACI63092.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209574215|gb|ACI63101.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|209574234|gb|ACI63120.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae] gi|289065758|gb|ADC80914.1| TnpR [Klebsiella pneumoniae] gi|293339405|gb|ADE43959.1| resolvase [Klebsiella pneumoniae] Length = 571 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H +RHS A+H L+ G L +++ L H+ ++TT +Y Sbjct: 508 TPHWMRHSHASHALARGAQLTAVRDNLRHASIATTSMY 545 >gi|317477400|ref|ZP_07936631.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906494|gb|EFV28217.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 411 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 395 >gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 375 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ Sbjct: 311 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKL 357 >gi|258653763|ref|YP_003202919.1| integrase [Nakamurella multipartita DSM 44233] gi|258556988|gb|ACV79930.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 638 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH RH+ T L G +++I +ILGH + +Y+ ++ + Y+ Sbjct: 530 SAHRFRHTLGTQLAEGGARIQTIMAILGHRSAEMSLVYSRISDPEIRRQYE 580 >gi|227517510|ref|ZP_03947559.1| integrase [Enterococcus faecalis TX0104] gi|227075030|gb|EEI12993.1| integrase [Enterococcus faecalis TX0104] Length = 424 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +TT H +RH+F T L + G + +++Q I+GHS ++ T Y Sbjct: 367 TTTPHAMRHTFCTRLANAGMNPKALQYIMGHSNITMTLNY 406 >gi|91224611|ref|ZP_01259872.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus 12G01] gi|91190499|gb|EAS76767.1| Site-specific recombinase XerD-like protein [Vibrio alginolyticus 12G01] Length = 396 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 HT RHS+A+ L+S G D+ ++ +LGH +S+T Y ++ + + Sbjct: 339 HTARHSYASSLISAGVDVGVLKQLLGHKSISSTMRYARAGNESLRQ 384 >gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 398 Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H N L I +LGH+ + TT Y + + ++E Q Sbjct: 339 HDLRHTFASHAAMNKETLPMIGRLLGHANVQTTARYAHFDDGHLLEAAQQ 388 >gi|256839862|ref|ZP_05545371.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738792|gb|EEU52117.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 409 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA + G L ++Q +LGH + +TQIY + + ++ E D+ Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQIYAELINPKVGEDTDK 396 >gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 286 Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH FA + D+ + +LGHS + TT+IYT + + +DQ Sbjct: 226 HNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRYFDQ 275 >gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10] gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10] Length = 423 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HT+RH+FA+ L D++ I +LGH +STT Sbjct: 341 HTMRHTFASRLFKKKVDIKVISELLGHKDVSTT 373 >gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC 43184] gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC 43184] Length = 415 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] Length = 312 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H RH + L G D+ +I +LGH+ LSTTQIY Sbjct: 249 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 289 >gi|309776037|ref|ZP_07671028.1| transposase [Erysipelotrichaceae bacterium 3_1_53] gi|308915988|gb|EFP61737.1| transposase [Erysipelotrichaceae bacterium 3_1_53] Length = 104 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 49 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 83 >gi|262384905|ref|ZP_06078034.1| integrase [Bacteroides sp. 2_1_33B] gi|262293457|gb|EEY81396.1| integrase [Bacteroides sp. 2_1_33B] Length = 235 Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHSFA+ L + I +LGH + TTQIY Sbjct: 167 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIY 207 >gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria monocytogenes F6900] gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria monocytogenes J2818] gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria monocytogenes F6900] gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria monocytogenes J2818] Length = 393 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS A+ LL G +++ IQ+ILGHS + T Sbjct: 334 HDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 366 >gi|229113526|ref|ZP_04242975.1| Phage integrase [Bacillus cereus Rock1-15] gi|229162106|ref|ZP_04290078.1| Phage integrase [Bacillus cereus R309803] gi|228621357|gb|EEK78211.1| Phage integrase [Bacillus cereus R309803] gi|228669944|gb|EEL25338.1| Phage integrase [Bacillus cereus Rock1-15] Length = 351 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 294 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 338 >gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 371 Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ A LL G D I LGH + TTQIY + + E +T+P Sbjct: 257 SPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311 >gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 332 Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ A LL G D I LGH + TTQIY + + E +T+P Sbjct: 257 SPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311 >gi|326943493|gb|AEA19386.1| Phage integrase [Bacillus thuringiensis serovar chinensis CT-43] Length = 347 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 290 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 334 >gi|309775756|ref|ZP_07670752.1| transposase [Erysipelotrichaceae bacterium 3_1_53] gi|308916519|gb|EFP62263.1| transposase [Erysipelotrichaceae bacterium 3_1_53] Length = 105 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 50 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 84 >gi|307320693|ref|ZP_07600105.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306893620|gb|EFN24394.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 128 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S Sbjct: 71 VPHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLAS 113 >gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] Length = 331 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 279 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 318 >gi|78777136|ref|YP_393451.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497676|gb|ABB44216.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 393 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 + LRH+FA+ ++S G D+ + +LGH +S T +IYT Sbjct: 322 YNLRHTFASQMISKGADITWVSKMLGHKDVSITLKIYT 359 >gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269] gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 341 TFHMARHTSGTMSLSAGIPIESIAKMIGHASIASTQIYAQVTDNKISEDMDR 392 >gi|309778009|ref|ZP_07672951.1| transposase [Erysipelotrichaceae bacterium 3_1_53] gi|308914298|gb|EFP60096.1| transposase [Erysipelotrichaceae bacterium 3_1_53] Length = 75 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 20 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 54 >gi|299141363|ref|ZP_07034500.1| transposase [Prevotella oris C735] gi|298577323|gb|EFI49192.1| transposase [Prevotella oris C735] Length = 389 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT L++ + ++ +LGH + TTQIY V Sbjct: 332 TFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372 >gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 407 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RH++AT + LS G + S+ +LGH L +TQIY + ++ E + I K Sbjct: 344 HAGRHTYATEICLSQGVPIESVSRMLGHRDLRSTQIYAKITEHKIAEDMQRAESRIEDK 402 >gi|212694523|ref|ZP_03302651.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855] gi|212663024|gb|EEB23598.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855] Length = 400 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 332 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 384 >gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503] gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503] Length = 415 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|294623922|ref|ZP_06702749.1| phage integrase/recombinase [Enterococcus faecium U0317] gi|291596684|gb|EFF27908.1| phage integrase/recombinase [Enterococcus faecium U0317] Length = 408 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH++AT G ++ I + L HS +STT+IY N Sbjct: 348 SPHKLRHTYATIAREGGANMNQISNALTHSDISTTKIYVN 387 >gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Jonquetella anthropi E3_33 E1] gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Jonquetella anthropi E3_33 E1] Length = 391 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH FA+ L+ G DL +++ +LGHS L T Y ++ ++ Sbjct: 340 HDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKL 383 >gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] Length = 393 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-NSKR 48 T H RH+ A+ L G DL+ IQ LGH + TT IYT+V N+K+ Sbjct: 313 TPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKK 359 >gi|257882412|ref|ZP_05662065.1| phage integrase/recombinase [Enterococcus faecium 1,231,502] gi|257818070|gb|EEV45398.1| phage integrase/recombinase [Enterococcus faecium 1,231,502] Length = 395 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH++AT G ++ I + L HS +STT+IY N Sbjct: 335 SPHKLRHTYATIAREGGANMNQISNALTHSDISTTKIYVN 374 >gi|254495557|ref|ZP_05108480.1| Phage integrase [Legionella drancourtii LLAP12] gi|254355240|gb|EET13852.1| Phage integrase [Legionella drancourtii LLAP12] Length = 229 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 +S H LRHS L ++G D RSIQ LGH + T YT +++ R + Sbjct: 175 LSVHPHMLRHSTGYKLANDGRDTRSIQHYLGHKNIQNTVRYTEMSATRFKGFW 227 >gi|213579719|ref|ZP_03361545.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 167 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 15/23 (65%), Positives = 18/23 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQS 28 H LRHSFATH+L + GDLR +Q Sbjct: 145 HKLRHSFATHMLESSGDLRGVQE 167 >gi|160937812|ref|ZP_02085171.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC BAA-613] gi|158439251|gb|EDP17004.1| hypothetical protein CLOBOL_02704 [Clostridium bolteae ATCC BAA-613] Length = 278 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH FA + + GD+ + +LGH + TT+IY +S I ++ Sbjct: 224 PHSFRHRFAKNFIEKCGDISLLSDLLGHESIETTRIYLRRSSSEQYRIVNKV 275 >gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503] gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503] Length = 415 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|77734445|emb|CAJ26229.1| integerase-recombinase [Thermotoga sp. KOL6] Length = 190 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H RHSFA L+ G L IQ++LGH Sbjct: 161 VTPHVFRHSFAVALIERGVPLNKIQALLGH 190 >gi|121583301|ref|YP_973737.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120596559|gb|ABM39995.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 618 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 24/46 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT + L +Q +LGH+ TT IY R ++ Sbjct: 565 HALRHTFATRAAAGTMPLDVLQRLLGHASSQTTSIYVRAERTRSLD 610 >gi|288926026|ref|ZP_06419955.1| transposase [Prevotella buccae D17] gi|288337246|gb|EFC75603.1| transposase [Prevotella buccae D17] Length = 389 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT L++ + ++ +LGH + TTQIY V Sbjct: 332 TFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372 >gi|265756478|ref|ZP_06090684.1| predicted protein [Bacteroides sp. 3_1_33FAA] gi|263233666|gb|EEZ19281.1| predicted protein [Bacteroides sp. 3_1_33FAA] Length = 76 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S Sbjct: 2 HCSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILS 42 >gi|261881178|ref|ZP_06007605.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332047|gb|EFA42833.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 389 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT L++ + ++ +LGH + TTQIY V Sbjct: 332 TFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372 >gi|255014213|ref|ZP_05286339.1| transposase [Bacteroides sp. 2_1_7] Length = 415 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|149908940|ref|ZP_01897599.1| DNA integration/recombination/invertion protein [Moritella sp. PE36] gi|149807951|gb|EDM67894.1| DNA integration/recombination/invertion protein [Moritella sp. PE36] Length = 84 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 +H LRH+FA++ + NGG++ +Q IL H+ + T Y+ Sbjct: 26 SHVLRHTFASYFMMNGGNILVLQRILEHASIVDTMKYS 63 >gi|301310582|ref|ZP_07216521.1| integrase [Bacteroides sp. 20_3] gi|300832156|gb|EFK62787.1| integrase [Bacteroides sp. 20_3] Length = 415 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|254884584|ref|ZP_05257294.1| transposase [Bacteroides sp. 4_3_47FAA] gi|254837377|gb|EET17686.1| transposase [Bacteroides sp. 4_3_47FAA] Length = 415 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ MEI Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEI 399 >gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] Length = 416 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRHS AT L N ++ IQ+ LGHS + TT +IY ++ ++ I D Sbjct: 359 HDLRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDKSIVD 408 >gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 351 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LRH+ HL G DL +I+ +LG L+ Q+Y+ Sbjct: 283 TIHGLRHTLGGHLADAGCDLDTIRRVLGQKTLTMAQLYS 321 >gi|260061988|ref|YP_003195068.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783550|gb|EAR14721.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 423 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + LSNG + ++ +LGH L TQ Y + +K++ + Sbjct: 345 TTHLARHTFATTVTLSNGVPIETVGKLLGHRNLRATQHYAKIVNKKVAD 393 >gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11] gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11] Length = 311 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H RH + L G D+ +I +LGH+ LSTTQIY Sbjct: 248 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288 >gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49] Length = 311 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H +RH+ A+H L+ G +L ++ L HS +STT Y + + + +DQ S Sbjct: 251 SPHWMRHTHASHALARGAELIMVRDNLRHSSISTTSTYLHSDEVQRARQFDQAFRS 306 >gi|309778011|ref|ZP_07672952.1| transposase [Erysipelotrichaceae bacterium 3_1_53] gi|308914201|gb|EFP60000.1| transposase [Erysipelotrichaceae bacterium 3_1_53] Length = 84 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 29 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 63 >gi|307152800|ref|YP_003888184.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306983028|gb|ADN14909.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 187 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+ R S ++L+SNG DLR++Q+I GHS + Y + N R Sbjct: 135 HSGRRSLISNLISNGVDLRTVQAITGHSSIQNVIRYADSNPHRC 178 >gi|268610071|ref|ZP_06143798.1| Phage integrase [Ruminococcus flavefaciens FD-1] Length = 386 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T H LRH AT LL++G DL+ I LGH + T IY +V K+ + + D Sbjct: 324 TLHKLRHCNATLLLNSGVDLKVISEHLGHCDIGVTANIYADVLRKQKIRLAD 375 >gi|111026971|ref|YP_708949.1| XerC/XerD family integrase/recombinase [Rhodococcus jostii RHA1] gi|110825510|gb|ABH00791.1| probable integrase/recombinase, XerC and XerD family [Rhodococcus jostii RHA1] Length = 376 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H RH FA++L +G L IQ +LGH+ S+ Y + + R+ + ++ PS Sbjct: 311 SISPHQCRHGFASNLADSGALLDEIQGLLGHASASSATPYLHPSPDRLRDAVERV-PS 367 >gi|299783067|gb|ADJ41065.1| Integrase [Lactobacillus fermentum CECT 5716] Length = 361 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS LL+NG DL +I LGHS ++TT Sbjct: 300 HSLRHSHVAFLLANGIDLYAISKRLGHSDITTT 332 >gi|296163014|ref|ZP_06845790.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886758|gb|EFG66600.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 419 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ S K Sbjct: 359 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQAFRSRDHK 418 >gi|254261414|ref|ZP_04952468.1| phage integrase family protein [Burkholderia pseudomallei 1710a] gi|254220103|gb|EET09487.1| phage integrase family protein [Burkholderia pseudomallei 1710a] Length = 565 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 556 >gi|167738592|ref|ZP_02411366.1| phage integrase family protein [Burkholderia pseudomallei 14] gi|167894302|ref|ZP_02481704.1| phage integrase family protein [Burkholderia pseudomallei 7894] Length = 511 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 451 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 502 >gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110] gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110] Length = 401 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H+LRH+ AT L G L +Q +LGH+ TT +Y ++ + + Sbjct: 303 SPHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 348 >gi|50955666|ref|YP_062954.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952148|gb|AAT89849.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 312 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 21/35 (60%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 LRH+FAT +L G + +LGHS L T IYT Sbjct: 245 LRHTFATMMLDAGVSANDTKDVLGHSSLQVTDIYT 279 >gi|76811922|ref|YP_333498.1| phage integrase family protein [Burkholderia pseudomallei 1710b] gi|76581375|gb|ABA50850.1| phage integrase family protein [Burkholderia pseudomallei 1710b] Length = 559 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 499 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 550 >gi|296506648|ref|YP_003667882.1| Integrase-recombinase [Bacillus thuringiensis BMB171] gi|296327235|gb|ADH10162.1| Integrase-recombinase [Bacillus thuringiensis BMB171] Length = 390 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|282877050|ref|ZP_06285893.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300821|gb|EFA93147.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 389 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT L++ + ++ +LGH + TTQIY V Sbjct: 332 TFHVARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372 >gi|237718481|ref|ZP_04548962.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452188|gb|EEO57979.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 406 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FA L+N + +I +LGHS + TT+IY V Sbjct: 348 TTHVGRHTFACIALANKVSMETIARMLGHSDIRTTKIYAKV 388 >gi|229021527|ref|ZP_04178126.1| Phage integrase [Bacillus cereus AH1273] gi|229027280|ref|ZP_04183546.1| Phage integrase [Bacillus cereus AH1272] gi|229035259|ref|ZP_04189194.1| Phage integrase [Bacillus cereus AH1271] gi|228728071|gb|EEL79112.1| Phage integrase [Bacillus cereus AH1271] gi|228734016|gb|EEL84744.1| Phage integrase [Bacillus cereus AH1272] gi|228739760|gb|EEL90158.1| Phage integrase [Bacillus cereus AH1273] Length = 360 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y ++R Sbjct: 303 TPHTCRHFMANYLMEKGIELKKIRDYLGHESIMTTERYLRERTRR 347 >gi|225027746|ref|ZP_03716938.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353] gi|224954950|gb|EEG36159.1| hypothetical protein EUBHAL_02005 [Eubacterium hallii DSM 3353] Length = 415 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LRH+ AT L G + IQ LGH + TT+ YT+ +K+M+ + D+ Sbjct: 354 HSLRHTHATILYEAGVPMPLIQKRLGHINIQTTKRYTDHVTKKMLSMLDEV 404 >gi|224025612|ref|ZP_03643978.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM 18228] gi|224018848|gb|EEF76846.1| hypothetical protein BACCOPRO_02352 [Bacteroides coprophilus DSM 18228] Length = 219 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+FA+ ++N L SI +LGH+ + TT+IY + Sbjct: 161 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 201 >gi|254169467|ref|ZP_04876286.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469] gi|197621584|gb|EDY34180.1| hypothetical protein ABOONEI_2736 [Aciduliprofundum boonei T469] Length = 222 Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 AH RH A L +G +L +I+ LGHS L TTQ Y + +M +D+ I +KD Sbjct: 148 AHAARHWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY--IRRLQMEWSFDE----IREKD 201 Query: 65 KK 66 K+ Sbjct: 202 KR 203 >gi|66396123|ref|YP_240491.1| ORF010 [Staphylococcus phage 55] gi|62636541|gb|AAX91652.1| ORF010 [Staphylococcus phage 55] Length = 349 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|315037971|ref|YP_004031539.1| phage integrase family site specific recombinase [Lactobacillus amylovorus GRL 1112] gi|312276104|gb|ADQ58744.1| phage integrase family site specific recombinase [Lactobacillus amylovorus GRL 1112] Length = 143 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 11/61 (18%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T LL G + + +LGHS +STT M++Y HP Sbjct: 83 VTPHGLRHTYGTLLLEAGTPITDVSKLLGHSSISTT-----------MQVYIDLHPVTNH 131 Query: 63 K 63 K Sbjct: 132 K 132 >gi|289523119|ref|ZP_06439973.1| tyrosine recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503662|gb|EFD24826.1| tyrosine recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 81 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + LRH A + L NG + ++Q+I+GHS L TT+ Y + + E ++ P Sbjct: 15 SPYDLRHDAALYFLRNGMNPFALQAIMGHSNLETTKHYIALVEADIREAQEKASP 69 >gi|170293838|gb|ACB12974.1| putative integrase [Aquabacterium sp. PL1F5] Length = 207 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQT 205 >gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424] gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 289 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRH+ A+H L G L +Q+ LGHS ++TT+ Y Sbjct: 236 VSPHWLRHAHASHSLDRGAPLHLVQATLGHSSVATTERY 274 >gi|122891785|ref|YP_001004330.1| integrase [Staphylococcus phage phiETA3] gi|121309264|dbj|BAF43885.1| integrase [Staphylococcus phage phiETA3] Length = 349 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 430 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TT H LRH+FA+ + +G L I ILGHS + TT+ Y ++ Sbjct: 357 TTLHDLRHTFASLAIEDGKTLPIIGKILGHSDIKTTERYAHL 398 >gi|269202472|ref|YP_003281741.1| integrase [Staphylococcus aureus subsp. aureus ED98] gi|262074762|gb|ACY10735.1| integrase [Staphylococcus aureus subsp. aureus ED98] Length = 349 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 388 Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H +RH+FAT L G + +++Q +LGHS +S T YT+V Sbjct: 329 HDMRHTFATRLFELGEEPKTVQELLGHSTVSITLNTYTHV 368 >gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 402 Score = 38.1 bits (87), Expect = 0.46, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++ +HL G L++IQ ++GH + T+ Y +++ Sbjct: 333 HDLRHTYGSHLAMRGVPLKAIQELMGHVTIEMTERYAHLS 372 >gi|303242126|ref|ZP_07328616.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302590313|gb|EFL60071.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 423 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTHPS 59 T H LRH+ A++L+S G D+ S+ LGHS +TT IY + KR E D+ +P Sbjct: 353 TFHGLRHTSASYLISCGQDVVSVAKRLGHSSSNTTLSIYAHAFKKRDEEAAVHMDKLYPQ 412 Query: 60 ITQKDKKN 67 K + N Sbjct: 413 SEDKQQGN 420 >gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7] Length = 373 Score = 37.7 bits (86), Expect = 0.46, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L+ G DL ++ +LGH + +TQ+Y + Sbjct: 315 TFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKI 355 >gi|253316877|ref|ZP_04840090.1| integrase [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 349 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|89054027|ref|YP_509478.1| phage integrase [Jannaschia sp. CCS1] gi|88863576|gb|ABD54453.1| phage integrase [Jannaschia sp. CCS1] Length = 201 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T LRH + + + NG L +Q LGH++LSTT IY + K Sbjct: 147 TPKGLRHGYGINAIVNGIPLHMLQKWLGHAQLSTTTIYADAIGK 190 >gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 396 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + +G L + +LGHS++S T Y +V Sbjct: 335 HDLRHTFASHAVMSGVPLPVVARLLGHSKISMTMRYAHV 373 >gi|255505350|ref|ZP_05345621.3| putative phage integrase/recombinase [Bryantella formatexigens DSM 14469] gi|255268514|gb|EET61719.1| putative phage integrase/recombinase [Bryantella formatexigens DSM 14469] Length = 306 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH FA D+ + ILGH+ + TT+IYT VN + + D Sbjct: 252 HNLRHLFAITYYDVEKDISHLADILGHASIDTTRIYTMVNGEEQAKQID 300 >gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402] gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402] Length = 286 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH FA + D+ + +LGHS + TT+IYT + + +DQ Sbjct: 226 HNLRHLFAVTYYNLKKDIARLADLLGHSSMDTTRIYTMSSGREFKRYFDQ 275 >gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 382 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH+FAT L+ G DL ++ +LGH + +TQ+Y + Sbjct: 324 TFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKI 364 >gi|150007391|ref|YP_001302134.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149935815|gb|ABR42512.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 403 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF T L+S + SI ++GHS + TTQ Y + ++ + D+ Sbjct: 337 TYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388 >gi|29349429|ref|NP_812932.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341338|gb|AAO79126.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 403 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF T L+S + SI ++GHS + TTQ Y + ++ + D+ Sbjct: 337 TYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388 >gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 410 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV------NSKRMME 51 H LRH+ A+ L+ G DL +Q LGHS TQ Y++V N+ R ME Sbjct: 341 HCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRAME 392 >gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 354 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H+LRH+ T LL G LR IQ +GH+ +TT+ Y Sbjct: 295 SPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERY 332 >gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 406 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+NG + S+ +LGH + TTQ Y + +++ + Sbjct: 347 TFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISD 395 >gi|157168021|gb|ABV25530.1| IntI1 [Klebsiella pneumoniae] Length = 300 Score = 37.7 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 16/26 (61%), Positives = 21/26 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSI 29 T HTLRHSFAT LL +G D+R++Q + Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQDL 300 >gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 311 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H RH + L G D+ +I +LGH+ LSTTQIY Sbjct: 248 VRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIY 288 >gi|170717950|ref|YP_001784999.1| phage integrase family protein [Haemophilus somnus 2336] gi|168826079|gb|ACA31450.1| phage integrase family protein [Haemophilus somnus 2336] Length = 299 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + T+H RH+ AT +L GD+ +++ +LGH L+ T Y + N M+ Sbjct: 244 FTVTSHRFRHTTATEVLKQSGDIYAVKQLLGHKDLTVTLTYIH-NDPEML 292 >gi|319788796|ref|YP_004090111.1| integrase family protein [Ruminococcus albus 7] gi|315450663|gb|ADU24225.1| integrase family protein [Ruminococcus albus 7] Length = 410 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H+LRHS AT+LL +G + I ILGH+ ++T+ Y Sbjct: 357 HSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYV 393 >gi|229825085|ref|ZP_04451154.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC 49176] gi|306826701|ref|ZP_07460004.1| transposase [Streptococcus pyogenes ATCC 10782] gi|229790457|gb|EEP26571.1| hypothetical protein GCWU000182_00435 [Abiotrophia defectiva ATCC 49176] gi|304431149|gb|EFM34155.1| transposase [Streptococcus pyogenes ATCC 10782] Length = 396 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TT HTLRH+F T++ + G + +++Q ++GH+ ++ T Y Sbjct: 340 TTPHTLRHTFCTNMANAGMNPKALQYLMGHANITMTLNY 378 >gi|228911955|ref|ZP_04075682.1| Integrase-recombinase [Bacillus thuringiensis IBL 200] gi|228847676|gb|EEM92603.1| Integrase-recombinase [Bacillus thuringiensis IBL 200] Length = 390 Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70] gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70] Length = 329 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RH+FA + G + +Q++LGHS + + Y N+ S ++E + P Sbjct: 263 ATCHKFRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYVNLFSDDVVEKHKSFSP 318 >gi|332829912|gb|EGK02540.1| hypothetical protein HMPREF9455_00790 [Dysgonomonas gadei ATCC BAA-286] Length = 334 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + +RHS+AT +L G + I +GH+ + TTQIY Sbjct: 256 TTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIY 293 >gi|295704637|ref|YP_003597712.1| phage integrase family protein [Bacillus megaterium DSM 319] gi|294802296|gb|ADF39362.1| phage integrase family protein [Bacillus megaterium DSM 319] Length = 360 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S + H RH+F T+ L+N L ++ ++GHS ++TT +Y Sbjct: 302 SISPHWFRHTFITNSLANDVPLAVVKQVVGHSSIATTNVY 341 >gi|271961793|ref|YP_003335989.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM 43021] gi|270504968|gb|ACZ83246.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM 43021] Length = 108 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 35/54 (64%) Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + AT L+ G ++R +Q +LGH+R++TT+ YT+V++ M + ++ ++ K Sbjct: 54 QAAATLLIEQGVNIRVVQEVLGHTRVTTTERYTHVSTPLMRDAGERLASALWGK 107 >gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 321 Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + LRH+FA L NGG+ ++Q LGH+ L+ T+ Y ++ Sbjct: 255 YQLRHTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSL 293 >gi|253731456|ref|ZP_04865621.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724699|gb|EES93428.1| integrase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 349 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|184155133|ref|YP_001843473.1| integrase [Lactobacillus fermentum IFO 3956] gi|183226477|dbj|BAG26993.1| integrase [Lactobacillus fermentum IFO 3956] Length = 364 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS LL+NG DL +I LGHS ++TT Sbjct: 303 HSLRHSHVAFLLANGIDLYAISKRLGHSDITTT 335 >gi|148267282|ref|YP_001246225.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|150393332|ref|YP_001316007.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|257794856|ref|ZP_05643835.1| phage integrase [Staphylococcus aureus A9781] gi|258418172|ref|ZP_05682437.1| phage integrase [Staphylococcus aureus A9763] gi|258421469|ref|ZP_05684394.1| phage integrase [Staphylococcus aureus A9719] gi|258448948|ref|ZP_05697057.1| phage integrase [Staphylococcus aureus A6224] gi|258453926|ref|ZP_05701898.1| phage integrase [Staphylococcus aureus A5937] gi|282929257|ref|ZP_06336830.1| integrase [Staphylococcus aureus A10102] gi|295406551|ref|ZP_06816357.1| integrase [Staphylococcus aureus A8819] gi|297245277|ref|ZP_06929151.1| integrase [Staphylococcus aureus A8796] gi|147740351|gb|ABQ48649.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|149945784|gb|ABR51720.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|257788828|gb|EEV27168.1| phage integrase [Staphylococcus aureus A9781] gi|257838965|gb|EEV63444.1| phage integrase [Staphylococcus aureus A9763] gi|257842395|gb|EEV66819.1| phage integrase [Staphylococcus aureus A9719] gi|257857844|gb|EEV80736.1| phage integrase [Staphylococcus aureus A6224] gi|257863791|gb|EEV86547.1| phage integrase [Staphylococcus aureus A5937] gi|282589133|gb|EFB94231.1| integrase [Staphylococcus aureus A10102] gi|285816526|gb|ADC37013.1| Integrase [Staphylococcus aureus 04-02981] gi|294968696|gb|EFG44719.1| integrase [Staphylococcus aureus A8819] gi|297177948|gb|EFH37197.1| integrase [Staphylococcus aureus A8796] gi|315128960|gb|EFT84957.1| phage integrase family protein [Staphylococcus aureus subsp. aureus CGS03] Length = 349 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|89896044|ref|YP_519531.1| hypothetical protein DSY3298 [Desulfitobacterium hafniense Y51] gi|89335492|dbj|BAE85087.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 108 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 AH RHS A HL +G L I+ LGH ++TT IY + ++ Sbjct: 30 AHLFRHSRAMHLYQSGIPLSYIKDFLGHVSVTTTSIYASADT 71 >gi|17426229|ref|NP_510895.1| similar to phage phi 11 integrase [Staphylococcus phage phiETA] gi|8918416|dbj|BAA97587.1| unnamed protein product [Staphylococcus phage phiETA] Length = 349 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|15923837|ref|NP_371371.1| integrase [Staphylococcus aureus subsp. aureus Mu50] gi|122891715|ref|YP_001004261.1| integrase [Staphylococcus phage phiETA2] gi|156979174|ref|YP_001441433.1| integrase [Staphylococcus aureus subsp. aureus Mu3] gi|255005635|ref|ZP_05144236.2| integrase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258440883|ref|ZP_05690718.1| integrase [Staphylococcus aureus A8115] gi|282894657|ref|ZP_06302884.1| integrase [Staphylococcus aureus A8117] gi|304443267|ref|YP_003857097.1| integrase [Staphylococcus phage SAP-26] gi|14246616|dbj|BAB57009.1| integrase [Staphylococcus aureus subsp. aureus Mu50] gi|121309194|dbj|BAF43816.1| integrase [Staphylococcus phage phiETA2] gi|156721309|dbj|BAF77726.1| integrase [Staphylococcus aureus subsp. aureus Mu3] gi|257852397|gb|EEV76318.1| integrase [Staphylococcus aureus A8115] gi|282762934|gb|EFC03067.1| integrase [Staphylococcus aureus A8117] gi|302749875|gb|ADL66960.1| integrase [Staphylococcus phage SAP-26] Length = 349 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|83749581|ref|ZP_00946566.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551] gi|83723736|gb|EAP70929.1| Hypothetical Protein RRSL_00421 [Ralstonia solanacearum UW551] Length = 197 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYD 54 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + + +KR ++ D Sbjct: 139 ASPHWMRHTHATHALARGAELTTVRDNLRHASVSTTSIYLHSDEAKRARQLGD 191 >gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820] gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820] Length = 361 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336 >gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC 43184] gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC 43184] Length = 409 Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH RH+FAT + L G + ++ +LGHS + TT+ Y +V K++ + Sbjct: 345 SAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFD 393 >gi|66396051|ref|YP_240411.1| ORF011 [Staphylococcus phage 71] gi|258423471|ref|ZP_05686362.1| integrase [Staphylococcus aureus A9635] gi|62636470|gb|AAX91581.1| ORF011 [Staphylococcus phage 71] gi|257846532|gb|EEV70555.1| integrase [Staphylococcus aureus A9635] Length = 349 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 296 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 328 >gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 336 Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKR 48 T H +RHS A LL G D+ I+ LGH+ ++TT Y TN+ KR Sbjct: 257 TPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKR 303 >gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 411 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + ++ Sbjct: 343 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKVKL 389 >gi|255008617|ref|ZP_05280743.1| integrase [Bacteroides fragilis 3_1_12] gi|313146348|ref|ZP_07808541.1| integrase [Bacteroides fragilis 3_1_12] gi|313135115|gb|EFR52475.1| integrase [Bacteroides fragilis 3_1_12] Length = 414 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF T L+S + SI ++GHS + TTQ Y + ++ + D+ Sbjct: 337 TYHQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388 >gi|227889705|ref|ZP_04007510.1| possible integrase [Lactobacillus johnsonii ATCC 33200] gi|227849569|gb|EEJ59655.1| possible integrase [Lactobacillus johnsonii ATCC 33200] Length = 120 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 9/63 (14%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPSITQ 62 TAH+ RH+ AT L NG L+ Q +L H + TT+IY N+++ + +P+ +Q Sbjct: 62 TAHSTRHTAATLSLLNGATLQQTQELLRHKNMQTTEIYAHNIDASK--------NPASSQ 113 Query: 63 KDK 65 DK Sbjct: 114 VDK 116 >gi|239623223|ref|ZP_04666254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522189|gb|EEQ62055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+ RH FA + + GD+ + +LGH + TT+IY +S I Sbjct: 224 PHSFRHRFAKNFIEKCGDITLLSDLLGHESIETTRIYLRRSSSEQYRI 271 >gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRHS AT L+ G ++++Q LGHS+ TT IY +V K Sbjct: 344 HDLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVTKK 386 >gi|303328556|ref|ZP_07358991.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302861322|gb|EFL84261.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 287 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+ L+ G L+ + ++LGHS + T+ Y ++ Sbjct: 233 HTLRHTFASWLVQRGVSLQVVSNLLGHSSVRVTERYAHL 271 >gi|294499284|ref|YP_003562984.1| phage integrase family protein [Bacillus megaterium QM B1551] gi|294349221|gb|ADE69550.1| phage integrase family protein [Bacillus megaterium QM B1551] Length = 360 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S + H RH+F T+ L+N L ++ ++GHS ++TT +Y Sbjct: 302 SISPHWFRHTFITNSLANDVPLAVVKQVVGHSSIATTNVY 341 >gi|291546134|emb|CBL19242.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 64 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 M H RH+F T + +G D +++ I GHS T YT++ + + + Y+ Sbjct: 1 MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 54 >gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 387 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ Sbjct: 340 TTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLF 387 >gi|260891567|ref|ZP_05902830.1| hypothetical protein GCWU000323_02782 [Leptotrichia hofstadii F0254] gi|260858675|gb|EEX73175.1| integrase [Leptotrichia hofstadii F0254] Length = 144 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 24/35 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH+FAT + G D +++ ILGH+ ++ T Sbjct: 84 TFHSLRHTFATQAIELGIDCKTVSEILGHASMNAT 118 >gi|92112118|gb|ABE73721.1| putative integrase/recombinase [Acidovorax sp. MUL2G8] Length = 207 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQTE 206 >gi|32471153|ref|NP_864146.1| integrase [Rhodopirellula baltica SH 1] gi|32396855|emb|CAD71823.1| integrase [Rhodopirellula baltica SH 1] Length = 227 Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 17/32 (53%), Positives = 22/32 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL 35 T HTLRHS+AT +L G +L+ +Q LGH L Sbjct: 196 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNL 227 >gi|331003766|ref|ZP_08327260.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412149|gb|EGG91544.1| hypothetical protein HMPREF0491_02122 [Lachnospiraceae oral taxon 107 str. F0167] Length = 396 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TT HTLRH+F T++ + G + +++Q ++GH+ ++ T Y Sbjct: 340 TTPHTLRHTFCTNMANAGMNPKALQYLIGHANITMTLNY 378 >gi|167750085|ref|ZP_02422212.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702] gi|167656958|gb|EDS01088.1| hypothetical protein EUBSIR_01053 [Eubacterium siraeum DSM 15702] Length = 398 Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH+FA+ L++ L ++ + LGHS LSTT IY +++ + E D Sbjct: 338 HDLRHTFASILINQDVPLLNVSTFLGHSDLSTTANIYAHLDKSKKQESAD 387 >gi|317055533|ref|YP_004104000.1| integrase family protein [Ruminococcus albus 7] gi|319788838|ref|YP_004090153.1| integrase family protein [Ruminococcus albus 7] gi|315447802|gb|ADU21366.1| integrase family protein [Ruminococcus albus 7] gi|315450705|gb|ADU24267.1| integrase family protein [Ruminococcus albus 7] Length = 410 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H+LRHS AT+LL +G + I ILGH+ ++T+ Y Sbjct: 357 HSLRHSLATNLLVSGTPINEIAVILGHTSAASTKTYV 393 >gi|290511259|ref|ZP_06550628.1| tyrosine recombinase [Klebsiella sp. 1_1_55] gi|289776252|gb|EFD84251.1| tyrosine recombinase [Klebsiella sp. 1_1_55] Length = 188 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R I+++ Sbjct: 119 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWER 171 >gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 373 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++AT + G +++ +Q+ LGH+ +S T IY++V + Sbjct: 317 HKLRHTWATLAIDQGANIKQVQTYLGHADVSMTLNIYSDVTKR 359 >gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus methanolicus] gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus MGA3] Length = 284 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH F +H +S G + + + GHS + TT +YTN +++ +Q Sbjct: 232 TPHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYTNPTKDELIQKMNQ 283 >gi|329922311|ref|ZP_08277988.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp. HGF5] gi|328942174|gb|EGG38445.1| putative site-specific tyrosine recombinase XerS [Paenibacillus sp. HGF5] Length = 360 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 2 STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T H LRHSFAT + L N D+ + LGH+ TT++Y ++ K M E Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSE 352 >gi|222147517|ref|YP_002548474.1| phage integrase protein [Agrobacterium vitis S4] gi|221734506|gb|ACM35469.1| phage integrase protein [Agrobacterium vitis S4] Length = 210 Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A + G+LR+IQ +LGH+++ T Y V+ + +E+ ++T Sbjct: 158 HSLRRTKAAMIYKATGNLRAIQILLGHTKIENTVRYLGVDIEDTLELAERT 208 >gi|82701258|ref|YP_410824.1| hypothetical protein Nmul_A0123 [Nitrosospira multiformis ATCC 25196] gi|82409323|gb|ABB73432.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 71 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S T+H+ R SF T+L S G +R S+ GH ++ Q+Y +VN Sbjct: 17 SATSHSGRCSFITNLASKGVGVRVSMSLAGHQSIAAAQLYIDVN 60 >gi|134291577|ref|YP_001115346.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134134766|gb|ABO59091.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 563 Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 505 SPHWMRHTHASHALARGAELVMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 556 >gi|261406276|ref|YP_003242517.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. Y412MC10] gi|261282739|gb|ACX64710.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 360 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Query: 2 STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S T H LRHSFAT + L N D+ + LGH+ TT++Y ++ K M E Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSE 352 >gi|255021717|ref|ZP_05293757.1| phage integrase family protein [Acidithiobacillus caldus ATCC 51756] gi|254968857|gb|EET26379.1| phage integrase family protein [Acidithiobacillus caldus ATCC 51756] Length = 70 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLR + AT + +LR++Q +LGH++L +T Y + +EI +Q Sbjct: 18 HTLRRTKATLIYKRTKNLRAVQLLLGHTKLESTVRYLGIEVDDTLEIAEQ 67 >gi|126698677|ref|YP_001087574.1| integrase [Clostridium difficile 630] gi|115250114|emb|CAJ67935.1| Integrase Tn1549-like, CTn4-Orf34 [Clostridium difficile] Length = 397 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T L + G + +++Q I+GHS ++ T Y Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379 >gi|257439570|ref|ZP_05615325.1| transposase [Faecalibacterium prausnitzii A2-165] gi|257198017|gb|EEU96301.1| transposase [Faecalibacterium prausnitzii A2-165] Length = 417 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T L + G + +++Q I+GHS ++ T Y Sbjct: 362 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 399 >gi|283798863|ref|ZP_06348016.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291073401|gb|EFE10765.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 307 Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + GD+ + +LGH + TT+IY +S +I ++ Sbjct: 254 HSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINK 303 >gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC BAA-613] gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC BAA-613] Length = 290 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA S DL + ILGHS ++TT+IYT Sbjct: 226 HNLRHLFARVYYSQEKDLVRLADILGHSSVNTTRIYT 262 >gi|149774742|gb|ABR28414.1| putative integrase/recombinase [Delftia tsuruhatensis] gi|151500317|gb|ABS12096.1| putative integrase/recombinase [Delftia acidovorans] Length = 207 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + AT + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 155 HSMRRTKATLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQTE 206 >gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 369 Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+FA+H + G +R +Q LGH+ ++ T Y +++ Sbjct: 315 TPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLS 356 >gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 369 Score = 37.7 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+FA+H + G +R +Q LGH+ ++ T Y +++ Sbjct: 315 TPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLS 356 >gi|145590019|ref|YP_001156616.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048425|gb|ABP35052.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 193 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 ++H+ R +F T+L + G +R + S+ GH +STTQ Y +VN Sbjct: 141 SSHSGRRTFITNLATKGVGVRVLMSLAGHKNISTTQAYIDVN 182 >gi|78357906|ref|YP_389355.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220311|gb|ABB39660.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 417 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 12/60 (20%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+ AT LLSNG D ++Q+I+G S L +M+E Y P+ +K Sbjct: 357 TFHCLRHTAATLLLSNGVDPVTVQNIMGWSTL------------KMLERYSHAIPATKRK 404 >gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 329 Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H+LRH + T L G DL +Q ++ H +TT+ YT + KR Sbjct: 264 TPHSLRHWYGTELSDRGADLAVVQDLMRHKSPNTTRGYTLIADKR 308 >gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 354 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQSI+ H ++TT Y V Sbjct: 296 TFHSYRRTFATLQGAAGTDIRTIQSIMAHKSITTTMRYMKV 336 >gi|320195256|gb|EFW69884.1| type 1 fimbriae regulatory protein FimE [Escherichia coli WV_060327] Length = 116 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 51 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 103 >gi|319902961|ref|YP_004162689.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417992|gb|ADV45103.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 410 Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HT RHS+AT + L+NG + ++ +LGHS + TQ Y V +++ Sbjct: 349 STHTARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYAKVMDSSILK 397 >gi|319774882|ref|YP_004134151.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317115230|gb|ADU97719.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 279 Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+F T L G I++++GHS L+TT Y + + + E Sbjct: 224 HRLRHTFGTELARRGVRPEVIRTLMGHSNLNTTAGYIGIADEELFE 269 >gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453] gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453] Length = 303 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T + LRH+FA L NG S+Q LGH +S T+ Y Sbjct: 244 TPYALRHAFALEFLRNGASAFSLQKTLGHVDISMTKRYV 282 >gi|295090532|emb|CBK76639.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 307 Score = 37.7 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + GD+ + +LGH + TT+IY +S +I ++ Sbjct: 254 HSFRHRFAKSFIEKCGDISLLSDLLGHRNIETTRIYLRRSSSEQYDIINK 303 >gi|237710854|ref|ZP_04541335.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237725668|ref|ZP_04556149.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|298385293|ref|ZP_06994852.1| integrase [Bacteroides sp. 1_1_14] gi|229435476|gb|EEO45553.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229454698|gb|EEO60419.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|298262437|gb|EFI05302.1| integrase [Bacteroides sp. 1_1_14] Length = 403 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T L+S G + S ++GH+ +++TQIY + ++ + D+ Sbjct: 339 HAARHTFGTLLVSEGISIESAAKMMGHADINSTQIYAQITDCKISKDMDR 388 >gi|255655014|ref|ZP_05400423.1| integrase [Clostridium difficile QCD-23m63] Length = 397 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T L + G + +++Q I+GHS ++ T Y Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNINMTLNY 379 >gi|330899100|gb|EGH30519.1| phage integrase family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 789 Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 24/41 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + +A LR SF + LL G R IQ ILGH++L TT Y Sbjct: 573 LRLSASRLRPSFISELLEKGVSPREIQVILGHAKLRTTIAY 613 >gi|261377411|ref|YP_003208350.1| putative integrase [uncultured bacterium] gi|257735399|emb|CAZ72214.1| putative integrase [uncultured bacterium] Length = 312 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H++RH+ AT L NGG + + +LGH+ ++TT IY+ Sbjct: 254 TGHSMRHTAATLNLLNGGTVEETRQLLGHTNINTTLIYS 292 >gi|167567539|ref|ZP_02360455.1| site-specific recombinase, phage integrase family protein [Burkholderia oklahomensis EO147] Length = 134 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+ G L ++ +LGHS +S T+ Y +++ Sbjct: 81 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLS 120 >gi|190404489|ref|YP_001961120.1| rcorf145 [Agrobacterium rhizogenes] gi|158322285|gb|ABW33702.1| rcorf145 [Agrobacterium rhizogenes] Length = 413 Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH RHS AT LL +G I +L H + +T+IY ++ ++ Sbjct: 357 AHLFRHSLATDLLRSGASFAEIGQLLRHRSIDSTRIYAKLDVDKL 401 >gi|332885104|gb|EGK05356.1| hypothetical protein HMPREF9456_02855 [Dysgonomonas mossii DSM 22836] Length = 334 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + +RHS+AT +L G + I +GH+ + TTQIY Sbjct: 256 TTYVMRHSWATLMLEAGKSVEIISQCMGHTSIRTTQIY 293 >gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 397 Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 36/58 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH++A++ +S+G ++ + +LGH+++ TT Y ++ +++ ++ S+ Sbjct: 322 TRIHDLRHTYASNAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADDPVLKAAEENASSL 379 >gi|167900078|ref|ZP_02487479.1| phage integrase family protein [Burkholderia pseudomallei 7894] Length = 524 Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 467 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 518 >gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 340 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H +RH+ A L+ +G DL I+ +LGH + TT++Y ++ Sbjct: 260 SPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADA 302 >gi|268611299|ref|ZP_06145026.1| phage integrase family site specific recombinase [Ruminococcus flavefaciens FD-1] Length = 360 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH FA++ + G D++S+ ILGHS + T Sbjct: 304 HALRHLFASNCIKLGADVKSLSEILGHSSVEIT 336 >gi|228931327|ref|ZP_04094256.1| Integrase-recombinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828330|gb|EEM74036.1| Integrase-recombinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 390 Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM 16841] gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T H LRH+FAT+ ++ G +++Q +LGH+ L T +Y +V Sbjct: 323 TPHCLRHTFATNCIAKGMRPKTLQKLLGHNSLQMTMDLYCHV 364 >gi|225017866|ref|ZP_03707058.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum DSM 5476] gi|224949378|gb|EEG30587.1| hypothetical protein CLOSTMETH_01800 [Clostridium methylpentosum DSM 5476] Length = 333 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TAH+LRH+ AT L GG L Q +L HS ++TT +Y Sbjct: 272 TAHSLRHTAATLNLLGGGSLEETQQLLRHSDINTTMVY 309 >gi|119488709|ref|ZP_01621718.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106] gi|119455132|gb|EAW36273.1| Type 1 fimbriae Regulatory protein fimB [Lyngbya sp. PCC 8106] Length = 193 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S H LRH+ +L S G D R+IQ LGH + T YT ++ +R + Sbjct: 140 SVYPHQLRHACGYYLASLGHDTRAIQDYLGHKNIHHTVRYTQMSPQRFESFW 191 >gi|325300191|ref|YP_004260108.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319744|gb|ADY37635.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 406 Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+FA+ ++N L SI +LGH+ + TT+IY + Sbjct: 348 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388 >gi|303242645|ref|ZP_07329119.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589784|gb|EFL59558.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 418 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H +RHS AT+LL + I +++GH R TT Y +V+ R+ Sbjct: 350 PHAMRHSLATNLLKKNISMPIISTVMGHQRTETTSTYISVDYGRL 394 >gi|301057500|ref|ZP_07198595.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300448398|gb|EFK12068.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 62 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 10 HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HS+ATH+L G DL +Q ILGH + TT YT++ S Sbjct: 1 HSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSN 38 >gi|237721768|ref|ZP_04552249.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229448637|gb|EEO54428.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 386 Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ T H RH+FA + G L ++Q +LGH + +TQ+Y + + ++ E D+ Sbjct: 319 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 373 >gi|160937813|ref|ZP_02085172.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC BAA-613] gi|158439252|gb|EDP17005.1| hypothetical protein CLOBOL_02705 [Clostridium bolteae ATCC BAA-613] Length = 316 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY +S E+ D+ Sbjct: 262 PHSFRHRFAKNFLTKFNDISLLADLMGHESIETTRIYLTRSSDEQRELIDR 312 >gi|159046240|ref|YP_001541912.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046542|ref|YP_001542212.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913999|gb|ABV95431.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157914301|gb|ABV95731.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 508 Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T +H RHS A+ L G DL I + L H+ TT IY V+ + E+ Sbjct: 448 LPTGSHVFRHSLASAWLRGGADLDLIGAALRHTSRDTTAIYAKVDVGMLEEV 499 >gi|300938277|ref|ZP_07153042.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1] gi|300456732|gb|EFK20225.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 21-1] Length = 184 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ + I + Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 177 Query: 63 KDKK 66 K K+ Sbjct: 178 KLKR 181 >gi|262381071|ref|ZP_06074209.1| integrase [Bacteroides sp. 2_1_33B] gi|262296248|gb|EEY84178.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFA L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|111020190|ref|YP_703162.1| transposase A [Rhodococcus jostii RHA1] gi|110819720|gb|ABG95004.1| possible transposase A [Rhodococcus jostii RHA1] Length = 374 Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+ AT + G ++Q LGH+ +T+IYT V+ ++ + Y Sbjct: 317 TPHALRHTHATAMWEAGMRELALQRRLGHASPESTRIYTRVSDTQVRDEY 366 >gi|82750529|ref|YP_416270.1| phage-related integrase [Staphylococcus aureus RF122] gi|82656060|emb|CAI80467.1| phage-related integrase [Staphylococcus aureus RF122] Length = 186 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+A++L +NG D+ +QS++ H++++ T Sbjct: 133 HALRHSYASYLANNGVDIFVLQSLMRHAQITET 165 >gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] Length = 301 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51 + HTLRH++A+ L NG D+ ++ +GHS + TQ Y +NS+ +E Sbjct: 241 SGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLNSEDFIE 289 >gi|291335907|gb|ADD95502.1| phage related integrase [uncultured phage MedDCM-OCT-S08-C41] Length = 282 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRH+F T L G L + I+GH+ + TT Y V+++ Sbjct: 229 HTLRHTFCTILAGKGTPLHQVAEIMGHNDIKTTLRYAKVSAE 270 >gi|265753987|ref|ZP_06089342.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|333029237|ref|ZP_08457298.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|263235701|gb|EEZ21225.1| site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|332739834|gb|EGJ70316.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 420 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH+F T + + GD+ + + ++GH L +T +Y +V Sbjct: 331 HTSRHTFGTLIQAATGDIETTKKLMGHKSLKSTAVYADV 369 >gi|260591104|ref|ZP_05856562.1| putative transposase [Prevotella veroralis F0319] gi|260536969|gb|EEX19586.1| putative transposase [Prevotella veroralis F0319] Length = 389 Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT L++ + ++ +LGH + TTQIY V Sbjct: 332 TFHIARHSFATLALAHDIPIENVSRMLGHKNIRTTQIYAKV 372 >gi|206578497|ref|YP_002236690.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342] gi|288933662|ref|YP_003437721.1| integrase [Klebsiella variicola At-22] gi|206567555|gb|ACI09331.1| type 1 fimbriae regulatory protein FimE [Klebsiella pneumoniae 342] gi|288888391|gb|ADC56709.1| integrase family protein [Klebsiella variicola At-22] Length = 202 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R I+++ Sbjct: 133 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGIWER 185 >gi|187926512|ref|YP_001892857.1| integrase family protein [Ralstonia pickettii 12J] gi|187928816|ref|YP_001899303.1| integrase family protein [Ralstonia pickettii 12J] gi|241589911|ref|YP_002979936.1| integrase family protein [Ralstonia pickettii 12D] gi|241666000|ref|YP_002984359.1| integrase family protein [Ralstonia pickettii 12D] gi|187725706|gb|ACD26871.1| integrase family protein [Ralstonia pickettii 12J] gi|187728266|gb|ACD29430.1| integrase family protein [Ralstonia pickettii 12J] gi|240868027|gb|ACS65687.1| integrase family protein [Ralstonia pickettii 12D] gi|240868623|gb|ACS66282.1| integrase family protein [Ralstonia pickettii 12D] Length = 397 Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S ++H LRH+ +H+ DLR ++ GH+ L+TT +Y + + +H Sbjct: 337 SASSHWLRHTAGSHMSDQQVDLRFVRDNFGHASLATTSVYLHAEDDARHQATQASH 392 >gi|77406673|ref|ZP_00783715.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] gi|77174714|gb|EAO77541.1| prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] Length = 263 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH++ ++L+S G DL +I I+GH L+ T Sbjct: 206 HSLRHTYVSYLISEGIDLFAISKIVGHKDLNIT 238 >gi|329955493|ref|ZP_08296401.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525896|gb|EGF52920.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 114 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FA+ ++N L SI +LGH+ + TT+IY + Sbjct: 58 HIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 96 >gi|313903435|ref|ZP_07836826.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313466256|gb|EFR61779.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 226 Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH----SRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+F T L G DL I+ +LGH + +TTQIY +V +R+ E ++ Sbjct: 169 SAHKLRHTFGTRLAEAGVDLLVIKDLLGHATVATTQATTQIYAHVAQRRLREAVEK 224 >gi|238903406|ref|YP_002929202.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli BW2952] gi|238863731|gb|ACR65729.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli BW2952] Length = 201 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 136 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 188 >gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] Length = 387 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T HTLRH+FAT + G + +++Q +LGH L T +Y +V Sbjct: 329 TLHTLRHTFATRAIECGMNPKTLQKLLGHGTLQMTMDLYCHV 370 >gi|167620936|ref|ZP_02389567.1| site-specific recombinase, phage integrase family protein [Burkholderia thailandensis Bt4] Length = 141 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+ G L ++ +LGHS +S T+ Y +++ Sbjct: 88 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLS 127 >gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri] Length = 361 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336 >gi|119945594|ref|YP_943274.1| phage integrase family protein [Psychromonas ingrahamii 37] gi|119864198|gb|ABM03675.1| phage integrase family protein [Psychromonas ingrahamii 37] Length = 331 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H R ++ T L+++G + IQ ++GHS TT++Y ++N KR ++ Sbjct: 279 HDFRRTYITELINDGNAIEDIQGLVGHSSPETTRVY-DLNKKRNLK 323 >gi|29826910|ref|NP_821544.1| integrase [Streptomyces avermitilis MA-4680] gi|29604007|dbj|BAC68079.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 205 Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 H LRH+ A+ L G D R I +LGHS + TT IYT V +D+ Sbjct: 130 HDLRHTCASLLHEQGADARMIMEVLGHSSIRVTTDIYTFVRLDSQRSAFDR 180 >gi|46204736|ref|ZP_00209538.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 58 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 23 LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +R +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 1 MRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHP 36 >gi|294637852|ref|ZP_06716122.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC 23685] gi|291088970|gb|EFE21531.1| type 1 fimbriae regulatory protein FimE [Edwardsiella tarda ATCC 23685] Length = 185 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 24/51 (47%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L G D R IQ LGH + T YT N KR ++ Q Sbjct: 134 PHVLRHACGYALADQGIDTRLIQDYLGHRNIRHTVHYTASNCKRFSRVWKQ 184 >gi|254437074|ref|ZP_05050568.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307] gi|198252520|gb|EDY76834.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307] Length = 80 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+ A LL +G D I LGH + TTQ+Y + + Sbjct: 4 VTPHVLRHTAAMQLLQSGVDRTIIALWLGHESIETTQVYIHAD 46 >gi|150007077|ref|YP_001301820.1| integrase [Parabacteroides distasonis ATCC 8503] gi|256840234|ref|ZP_05545742.1| integrase [Parabacteroides sp. D13] gi|298377497|ref|ZP_06987449.1| integrase [Bacteroides sp. 3_1_19] gi|301311260|ref|ZP_07217188.1| integrase [Bacteroides sp. 20_3] gi|149935501|gb|ABR42198.1| integrase [Parabacteroides distasonis ATCC 8503] gi|256737506|gb|EEU50832.1| integrase [Parabacteroides sp. D13] gi|298265516|gb|EFI07177.1| integrase [Bacteroides sp. 3_1_19] gi|300830834|gb|EFK61476.1| integrase [Bacteroides sp. 20_3] Length = 310 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFA L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|49176878|ref|YP_025381.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134] gi|72384260|ref|YP_293613.1| phage integrase [Ralstonia eutropha JMP134] gi|134287694|ref|YP_001109860.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134287822|ref|YP_001109987.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134288066|ref|YP_001110230.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134291498|ref|YP_001115267.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|296163802|ref|ZP_06846493.1| integrase family protein [Burkholderia sp. Ch1-1] gi|39777458|gb|AAR31033.1| putative Tn5504 resolvase [Ralstonia eutropha JMP134] gi|72123613|gb|AAZ65756.1| phage integrase [Ralstonia eutropha JMP134] gi|134132344|gb|ABO60079.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132472|gb|ABO60455.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132716|gb|ABO60342.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134134687|gb|ABO59012.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|295885953|gb|EFG65880.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 563 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ ATH ++ G +L +++ L H+ +STT IY + + + + Q Sbjct: 508 SPHWMRHTHATHAIARGVELSAVRDNLRHASISTTSIYLHTDDVKRARQFGQ 559 >gi|331698164|ref|YP_004334403.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326952853|gb|AEA26550.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 591 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + T+ H LRH AT L++ G D+R++ LGHS TT + T Sbjct: 351 IHTSIHKLRHFSATELIAAGVDIRTVAGRLGHSGGGTTTLRT 392 >gi|317487235|ref|ZP_07946033.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316921525|gb|EFV42813.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 352 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RHS T+L S G L SIQ++ GH+ + TT +Y Sbjct: 288 SPHWFRHSCFTYLASKGVRLESIQALAGHASIDTTMLY 325 >gi|291514108|emb|CBK63318.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 409 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RHS+AT + L NG L ++ +LGHS + TQ Y V ++ Q +I + Sbjct: 348 TTHCARHSYATSVCLVNGVSLENVAKMLGHSNIKMTQHYARVLDSSILRDMMQVERAIAK 407 >gi|255015298|ref|ZP_05287424.1| integrase [Bacteroides sp. 2_1_7] Length = 310 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 T++T+RHSFA L + I +LGH + TTQIY S ++M E+ Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTEV 294 >gi|228943482|ref|ZP_04105925.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976122|ref|ZP_04136621.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783597|gb|EEM31677.1| Integrase-recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816192|gb|EEM62374.1| Integrase-recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 390 Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY + KR Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKHMKR 377 >gi|153952355|ref|YP_001397994.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp. doylei 269.97] gi|152939801|gb|ABS44542.1| hypothetical protein JJD26997_0872 [Campylobacter jejuni subsp. doylei 269.97] Length = 286 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 236 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIY 271 >gi|294806822|ref|ZP_06765648.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|294445992|gb|EFG14633.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FA + G L ++Q +LGH + +TQ+Y + + ++ E D+ Sbjct: 342 VEVTPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 396 >gi|291514240|emb|CBK63450.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 67 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H RH+FAT + L NG L ++ +LGH ++TTQIY V + DQ +I K Sbjct: 6 HVSRHTFATTISLMNGVPLIALSKMLGHKSITTTQIYAKVTESMI----DQAITTINDK 60 >gi|300992559|ref|ZP_07179926.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1] gi|732682|emb|CAA85726.1| FimE protein [Escherichia coli] gi|1816486|emb|CAA71840.1| FimE recombinase [Escherichia coli] gi|300305300|gb|EFJ59820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 200-1] gi|324012903|gb|EGB82122.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 60-1] Length = 184 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 171 >gi|329768225|ref|ZP_08259726.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341] gi|328837424|gb|EGF87053.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341] Length = 365 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ AT L +G D++ I + LGHS + TT IYT++ + ++ D+ Sbjct: 306 TLHGFRHTHATLLYESGIDVKDISNRLGHSNIKTTLDIYTHLTEDKKKDVTDK 358 >gi|297516648|ref|ZP_06935034.1| tyrosine recombinase [Escherichia coli OP50] Length = 185 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ + I + Sbjct: 120 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 178 Query: 63 KDKK 66 K K+ Sbjct: 179 KLKR 182 >gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4] gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4] Length = 315 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T + LRH+ AT LL G ++ LGH LSTT+ Y + + + +D+ P Sbjct: 242 VKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLVEEDLRREHDRASP 299 >gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299] gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299] Length = 361 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336 >gi|254513015|ref|ZP_05125081.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221533014|gb|EEE36009.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 210 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + A + G+LR++Q +LGH+++ +T Y V + + I +Q Sbjct: 158 HSLRRTKAAEIYRKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALSIAEQ 207 >gi|210610681|ref|ZP_03288562.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787] gi|210152314|gb|EEA83320.1| hypothetical protein CLONEX_00752 [Clostridium nexile DSM 1787] Length = 413 Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F + N +L+ IQS++GH+ + TT IY V + E Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSVMGHADIETTMDIYAEVTETKKYE 401 >gi|110807982|ref|YP_691502.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] gi|300818491|ref|ZP_07098700.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1] gi|300823755|ref|ZP_07103880.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7] gi|300895832|ref|ZP_07114414.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1] gi|300905283|ref|ZP_07123055.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1] gi|300926461|ref|ZP_07142257.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1] gi|300977981|ref|ZP_07174112.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1] gi|301021321|ref|ZP_07185350.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1] gi|301048270|ref|ZP_07195304.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1] gi|301305107|ref|ZP_07211207.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1] gi|301328032|ref|ZP_07221193.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1] gi|301646818|ref|ZP_07246667.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1] gi|309795580|ref|ZP_07689996.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7] gi|110617530|gb|ABF06197.1| Type 1 fimbriae Regulatory protein fimE [Shigella flexneri 5 str. 8401] gi|300299892|gb|EFJ56277.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 185-1] gi|300360248|gb|EFJ76118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 198-1] gi|300398172|gb|EFJ81710.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 69-1] gi|300402867|gb|EFJ86405.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 84-1] gi|300409775|gb|EFJ93313.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 45-1] gi|300417568|gb|EFK00879.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 182-1] gi|300523667|gb|EFK44736.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 119-7] gi|300528895|gb|EFK49957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 107-1] gi|300839612|gb|EFK67372.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 124-1] gi|300845479|gb|EFK73239.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 78-1] gi|301074988|gb|EFK89794.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 146-1] gi|308120704|gb|EFO57966.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 145-7] gi|315255840|gb|EFU35808.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 85-1] gi|315286852|gb|EFU46269.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 110-3] gi|315293234|gb|EFU52586.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 153-1] gi|315298920|gb|EFU58174.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 16-3] gi|324005154|gb|EGB74373.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 57-2] gi|324016931|gb|EGB86150.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 117-3] Length = 184 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ + I + Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 177 Query: 63 KDKK 66 K K+ Sbjct: 178 KLKR 181 >gi|320193595|gb|EFW68230.1| type 1 fimbriae regulatory protein FimE [Escherichia coli WV_060327] Length = 198 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185 >gi|300928761|ref|ZP_07144276.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1] gi|300463241|gb|EFK26734.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 187-1] Length = 184 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ + I + Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 177 Query: 63 KDKK 66 K K+ Sbjct: 178 KLKR 181 >gi|260450873|gb|ACX41295.1| integrase family protein [Escherichia coli DH1] gi|323176201|gb|EFZ61793.1| phage integrase family protein [Escherichia coli 1180] Length = 183 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 118 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 170 >gi|201067901|ref|ZP_03217787.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni BH-01-0142] gi|200004519|gb|EDZ04997.1| hypothetical protein CJBH_2432 [Campylobacter jejuni subsp. jejuni BH-01-0142] Length = 312 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 262 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 298 >gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2] Length = 265 Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+F T L G DL +Q++LGH+ + TT Y ++ Sbjct: 206 HALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHL 244 >gi|327539537|gb|EGF26147.1| integrase/recombinase XerD [Rhodopirellula baltica WH47] Length = 71 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 22/29 (75%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 LL G D+R IQ +LGH+ + TT+IYT+V Sbjct: 14 LLWQGNDIRQIQQLLGHNDVKTTEIYTHV 42 >gi|315221308|ref|ZP_07863231.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] gi|315189667|gb|EFU23359.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] Length = 407 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 23/40 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT G L SI L HS LSTT+IY N Sbjct: 348 TPHMLRHTGATLAKKAGMSLESISEALTHSDLSTTKIYVN 387 >gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3] gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3] Length = 391 Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S T H LRHS A+ L+++G L +Q +LGHS T Y++++ + + Sbjct: 327 SFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESL 374 >gi|207743147|ref|YP_002259539.1| tyrosine recombinase protein [Ralstonia solanacearum IPO1609] gi|206594544|emb|CAQ61471.1| probable tyrosine recombinase protein [Ralstonia solanacearum IPO1609] Length = 173 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYD 54 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + + +KR ++ D Sbjct: 115 ASPHWMRHTHATHALARGAELTTVRDNLRHASVSTTSIYLHSDEAKRARQLGD 167 >gi|198275454|ref|ZP_03207985.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135] gi|255008845|ref|ZP_05280971.1| site-specific recombinase [Bacteroides fragilis 3_1_12] gi|198271083|gb|EDY95353.1| hypothetical protein BACPLE_01619 [Bacteroides plebeius DSM 17135] Length = 406 Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+FA+ ++N L SI +LGH+ + TT+IY + Sbjct: 348 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 388 >gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10] gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10] Length = 307 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T ++LRH FA + L NGG+ +Q I+GH+ T+ Y ++ + E Sbjct: 236 TPYSLRHCFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSDTDVKE 283 >gi|77734437|emb|CAJ26220.1| integerase-recombinase [Thermotoga neapolitana] gi|77734439|emb|CAJ26226.1| integerase-recombinase [Thermotoga neapolitana] gi|77734447|emb|CAJ26230.1| integerase-recombinase [Thermotoga sp. SG1] Length = 190 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H RHSFA L+ G L IQ++LGH Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190 >gi|291515320|emb|CBK64530.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T + RHSFAT L +G ++ I LGH L TTQIY + Sbjct: 351 TVTTYVARHSFATVLKKSGVNIGIISEALGHHSLKTTQIYLD 392 >gi|291513831|emb|CBK63041.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 411 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ ME+ Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEV 395 >gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262] gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262] Length = 361 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTT 336 >gi|229113593|ref|ZP_04243041.1| Integrase-recombinase [Bacillus cereus Rock1-15] gi|228669892|gb|EEL25287.1| Integrase-recombinase [Bacillus cereus Rock1-15] Length = 390 Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FA + G DL + LGH + TT+IY KR Sbjct: 332 TAHTFRHAFAIMAVEQGNADLYHLMQTLGHENIQTTKIYLEKYMKR 377 >gi|77734449|emb|CAJ26231.1| integerase-recombinase [Thermotoga petrophila RKU-1] Length = 190 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H RHSFA L+ G L IQ++LGH Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190 >gi|57505077|ref|ZP_00371025.1| site-specific recombinase XerC, putative [Campylobacter coli RM2228] gi|57019162|gb|EAL55874.1| site-specific recombinase XerC, putative [Campylobacter coli RM2228] Length = 312 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 262 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 298 >gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] Length = 320 Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LR +FAT L+S D+ +Q ++GH+ ++TT Y + + + Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENL 311 >gi|311063475|ref|YP_003970200.1| DNA integration/recombination/inversion protein [Bifidobacterium bifidum PRL2010] gi|310865794|gb|ADP35163.1| DNA integration/recombination/inversion protein [Bifidobacterium bifidum PRL2010] Length = 313 Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S +H+LR FAT G D+ + +LGHS +STT Y +N+ M + + T Sbjct: 228 SFPSHSLRRRFATFAYYRTGCDILLVSQLLGHSSVSTTMRYIGINTDLMRDAMEAT 283 >gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 383 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RHS A+ L S G ++ +Q LGHS + TT IYT+V Sbjct: 324 TIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHV 365 >gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 26/37 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH+LR + AT+ L + D+ +Q LGH+ ++TT+IY Sbjct: 263 AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIY 299 >gi|237716537|ref|ZP_04547018.1| transposase [Bacteroides sp. D1] gi|262405316|ref|ZP_06081866.1| transposase [Bacteroides sp. 2_1_22] gi|229442520|gb|EEO48311.1| transposase [Bacteroides sp. D1] gi|262356191|gb|EEZ05281.1| transposase [Bacteroides sp. 2_1_22] Length = 117 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H RH+FAT + L + L ++ +LGH++++TTQ+Y V ++M Sbjct: 47 HMARHTFATTITLQHEIPLETVSKMLGHTKITTTQVYARVVDTKVM 92 >gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149] gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149] Length = 405 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H+LRH+ A+ LL+ G D++ +Q LGH + TT +Y++V Sbjct: 350 HSLRHTHASILLAAGADIKYVQDRLGHKNIETTLNVYSHV 389 >gi|153855553|ref|ZP_01996669.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814] gi|166030341|ref|ZP_02233170.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC 27755] gi|240145460|ref|ZP_04744061.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|149751974|gb|EDM61905.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814] gi|166029861|gb|EDR48618.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC 27755] gi|257202433|gb|EEV00718.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|291563120|emb|CBL41936.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 412 Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM-MEIYDQTHPSITQK 63 H +RH+F + G D + +Q ++GH STT IYT+V + EI S QK Sbjct: 342 HAIRHTFCSRCFEKGMDAKVVQMLMGHQHYSTTIDIYTHVTETKFEEEIAKFGSVSEKQK 401 Query: 64 DKKN 67 +KN Sbjct: 402 VQKN 405 >gi|77734441|emb|CAJ26227.1| integerase-recombinase [Thermotoga naphthophila RKU-10] Length = 190 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H RHSFA L+ G L IQ++LGH Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190 >gi|91213958|ref|YP_543944.1| tyrosine recombinase [Escherichia coli UTI89] gi|110644754|ref|YP_672484.1| tyrosine recombinase [Escherichia coli 536] gi|117626621|ref|YP_859944.1| tyrosine recombinase [Escherichia coli APEC O1] gi|191170750|ref|ZP_03032302.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11] gi|215489637|ref|YP_002332068.1| tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218692718|ref|YP_002400930.1| tyrosine recombinase [Escherichia coli ED1a] gi|91075532|gb|ABE10413.1| type 1 fimbriae regulatory protein FimE [Escherichia coli UTI89] gi|110346346|gb|ABG72583.1| type 1 fimbriae regulatory protein FimE [Escherichia coli 536] gi|115515745|gb|ABJ03820.1| type 1 fimbriae regulatory protein FimE [Escherichia coli APEC O1] gi|190908974|gb|EDV68561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli F11] gi|215267709|emb|CAS12168.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O127:H6 str. E2348/69] gi|218430282|emb|CAV18156.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli ED1a] gi|222036049|emb|CAP78794.1| Type 1 fimbriae regulatory protein fimE [Escherichia coli LF82] gi|294490349|gb|ADE89105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli IHE3034] gi|307629471|gb|ADN73775.1| tyrosine recombinase [Escherichia coli UM146] gi|312948932|gb|ADR29759.1| tyrosine recombinase [Escherichia coli O83:H1 str. NRG 857C] Length = 198 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185 >gi|323965422|gb|EGB60877.1| phage integrase [Escherichia coli M863] gi|327250221|gb|EGE61940.1| phage integrase family protein [Escherichia coli STEC_7v] Length = 198 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185 >gi|302345418|ref|YP_003813771.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149232|gb|ADK95494.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 375 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFAT L++ + ++ +LGH + TTQIY V Sbjct: 318 TFHIARHSFATLALAHDVPIENVARMLGHQNIRTTQIYAKV 358 >gi|213585997|ref|ZP_03367823.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 34 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 31 GHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 GH+ LSTTQIYT+++ + + +YD HP Sbjct: 1 GHANLSTTQIYTHLDFQHLASVYDAAHP 28 >gi|212715996|ref|ZP_03324124.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM 16992] gi|212661363|gb|EEB21938.1| hypothetical protein BIFCAT_00908 [Bifidobacterium catenulatum DSM 16992] Length = 406 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ RH AT L + G +I+GH+ + TT +YT+ +R+ + D P + Sbjct: 348 YSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWRERRLAKTLDAALPDL 402 >gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 338 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T L G LR +Q +LGH TT +Y + + Sbjct: 280 SAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGDR 323 >gi|170690854|ref|ZP_02882020.1| integrase family protein [Burkholderia graminis C4D1M] gi|170144103|gb|EDT12265.1| integrase family protein [Burkholderia graminis C4D1M] Length = 408 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+ A L+ G L+ I LGH S T Y V+ + + E+ D Sbjct: 351 HALRHACAARLVDQGLSLKEIGDHLGHHSASATMTYAKVDMRALREVGD 399 >gi|227818733|ref|YP_002822704.1| phage integrase family protein [Sinorhizobium fredii NGR234] gi|36958986|gb|AAQ87411.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|227337732|gb|ACP21951.1| phage integrase family protein [Sinorhizobium fredii NGR234] Length = 88 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 29/51 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + A H+ G+LR++Q +LGH +L +T Y + + I +Q Sbjct: 36 HSMRRTKAAHIYKKTGNLRAVQLLLGHKKLESTIQYLGIEVDDALAISEQV 86 >gi|57237839|ref|YP_179087.1| phage integrase family site specific recombinase [Campylobacter jejuni RM1221] gi|57166643|gb|AAW35422.1| site-specific recombinase, phage integrase family [Campylobacter jejuni RM1221] Length = 223 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 173 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 209 >gi|77734443|emb|CAJ26228.1| integerase-recombinase [Thermotoga sp. RQ2] Length = 190 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H RHSFA L+ G L IQ++LGH Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190 >gi|330942081|gb|EGH44746.1| Phage integrase [Pseudomonas syringae pv. pisi str. 1704B] Length = 70 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 18 HGLRATAATNALEHEADIAKVQAWLGHADISTTKIY 53 >gi|313139933|ref|ZP_07802126.1| phage integrase [Bifidobacterium bifidum NCIMB 41171] gi|313132443|gb|EFR50060.1| phage integrase [Bifidobacterium bifidum NCIMB 41171] Length = 425 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 H+ RH+ AT L G D + +I+GHSR+STT +IYT+V R++ D +I Sbjct: 368 HSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVERAI 423 >gi|283957132|ref|ZP_06374596.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] gi|283791308|gb|EFC30113.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] Length = 223 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 173 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIYA 209 >gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1] gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1] Length = 375 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RH+FAT L+S +++Q +LGHS + T IYT++N+K E Sbjct: 316 TVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKE 365 >gi|153971556|ref|YP_001393096.1| putative site-specific recombinase [Vibrio vulnificus] gi|153971601|ref|YP_001393119.1| putative site-specific recombinase [Vibrio vulnificus] gi|152955078|emb|CAL25430.1| putative site-specific recombinase [Vibrio vulnificus] gi|152955102|emb|CAL25453.1| putative site-specific recombinase [Vibrio vulnificus] Length = 198 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 ++HT R S+ T + + G +LR+IQ LGHS S T Y +V+ ++M+ Sbjct: 144 CSSHTGRRSYGTSMNALGVELRAIQCALGHSDPSMTLEYIDVSDSQLMK 192 >gi|77734435|emb|CAJ26219.1| integerase-recombinase [Thermotoga sp. RQ7] Length = 190 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 18/30 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H RHSFA L+ G L IQ++LGH Sbjct: 161 VTPHIFRHSFAVALIERGVPLNKIQALLGH 190 >gi|15804888|ref|NP_290929.1| tyrosine recombinase [Escherichia coli O157:H7 EDL933] gi|15834526|ref|NP_313299.1| tyrosine recombinase [Escherichia coli O157:H7 str. Sakai] gi|82546660|ref|YP_410607.1| tyrosine recombinase [Shigella boydii Sb227] gi|168749531|ref|ZP_02774553.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4113] gi|168754879|ref|ZP_02779886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4401] gi|168760554|ref|ZP_02785561.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4501] gi|168766588|ref|ZP_02791595.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4486] gi|168773982|ref|ZP_02798989.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4196] gi|168782824|ref|ZP_02807831.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4076] gi|168784950|ref|ZP_02809957.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC869] gi|168797879|ref|ZP_02822886.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC508] gi|195937321|ref|ZP_03082703.1| tyrosine recombinase [Escherichia coli O157:H7 str. EC4024] gi|208805717|ref|ZP_03248054.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4206] gi|208813764|ref|ZP_03255093.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4045] gi|208821532|ref|ZP_03261852.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4042] gi|209398596|ref|YP_002273838.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4115] gi|217326621|ref|ZP_03442705.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. TW14588] gi|254796315|ref|YP_003081152.1| tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|261226671|ref|ZP_05940952.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O157:H7 str. FRIK2000] gi|261256942|ref|ZP_05949475.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O157:H7 str. FRIK966] gi|291285694|ref|YP_003502512.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7 str. CB9615] gi|12519320|gb|AAG59495.1|AE005662_7 recombinase involved in phase variation; regulator for fimA [Escherichia coli O157:H7 str. EDL933] gi|13364750|dbj|BAB38695.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia coli O157:H7 str. Sakai] gi|81248071|gb|ABB68779.1| FimE [Shigella boydii Sb227] gi|187770271|gb|EDU34115.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4196] gi|188016166|gb|EDU54288.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4113] gi|188999765|gb|EDU68751.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4076] gi|189357927|gb|EDU76346.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4401] gi|189364101|gb|EDU82520.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4486] gi|189368977|gb|EDU87393.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4501] gi|189375139|gb|EDU93555.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC869] gi|189379521|gb|EDU97937.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC508] gi|208725518|gb|EDZ75119.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4206] gi|208735041|gb|EDZ83728.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4045] gi|208741655|gb|EDZ89337.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4042] gi|209159996|gb|ACI37429.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC4115] gi|209749368|gb|ACI72991.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia coli] gi|209749370|gb|ACI72992.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia coli] gi|209749372|gb|ACI72993.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia coli] gi|209749374|gb|ACI72994.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia coli] gi|209749376|gb|ACI72995.1| type 1 fimbriae regulatory recombinase protein FimE [Escherichia coli] gi|217322842|gb|EEC31266.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. TW14588] gi|254595715|gb|ACT75076.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O157:H7 str. TW14359] gi|290765567|gb|ADD59528.1| Type 1 fimbriae regulatory protein FimE [Escherichia coli O55:H7 str. CB9615] gi|309704783|emb|CBJ04134.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli ETEC H10407] gi|320186174|gb|EFW60915.1| type 1 fimbriae regulatory protein FimE [Shigella flexneri CDC 796-83] gi|320190573|gb|EFW65223.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. EC1212] gi|320639040|gb|EFX08686.1| tyrosine recombinase [Escherichia coli O157:H7 str. G5101] gi|320644409|gb|EFX13474.1| tyrosine recombinase [Escherichia coli O157:H- str. 493-89] gi|320649727|gb|EFX18251.1| tyrosine recombinase [Escherichia coli O157:H- str. H 2687] gi|320654775|gb|EFX22744.1| tyrosine recombinase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660628|gb|EFX28089.1| tyrosine recombinase [Escherichia coli O55:H7 str. USDA 5905] gi|320665556|gb|EFX32602.1| tyrosine recombinase [Escherichia coli O157:H7 str. LSU-61] gi|326345375|gb|EGD69118.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. 1125] gi|326346770|gb|EGD70504.1| type 1 fimbriae regulatory protein FimE [Escherichia coli O157:H7 str. 1044] gi|332083284|gb|EGI88515.1| phage integrase family protein [Shigella boydii 5216-82] gi|332087140|gb|EGI92274.1| phage integrase family protein [Shigella boydii 3594-74] Length = 198 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ + I + Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNL-INE 191 Query: 63 KDKKN 67 K K+ Sbjct: 192 KLKRE 196 >gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD] gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD] Length = 358 Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 TAH LR +FAT L G ++SIQ L H L+TT Y V+ Sbjct: 280 TAHRLRGTFATLLSEAGVPVQSIQRALRHKNLTTTAAYLEVD 321 >gi|331699798|ref|YP_004336037.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326954487|gb|AEA28184.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 316 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ A +L++ L +Q+IL H+ ++TTQIYT + ++E Sbjct: 235 TLHDLRHTAAQRMLADPAFTLVDVQTILRHASVTTTQIYTQPRLEDLIE 283 >gi|323171324|gb|EFZ56971.1| phage integrase family protein [Escherichia coli LT-68] Length = 192 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185 >gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47] gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47] Length = 320 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LR +FAT L+S D+ +Q ++GH+ ++TT Y + + + Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENL 311 >gi|255691027|ref|ZP_05414702.1| integrase [Bacteroides finegoldii DSM 17565] gi|262408519|ref|ZP_06085065.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|293373336|ref|ZP_06619694.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294646521|ref|ZP_06724158.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807550|ref|ZP_06766347.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|260623366|gb|EEX46237.1| integrase [Bacteroides finegoldii DSM 17565] gi|262353384|gb|EEZ02478.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292631732|gb|EFF50352.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292638140|gb|EFF56521.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445251|gb|EFG13921.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ T H RH+FA + G L ++Q +LGH + +TQ+Y + + ++ E D+ Sbjct: 342 VNITPHIGRHTFAVLAILKGMPLETLQKVLGHKSILSTQVYAELINPKVGEDTDR 396 >gi|29566457|ref|NP_818023.1| gp50 [Mycobacterium phage Che9d] gi|29425182|gb|AAN07968.1| gp50 [Mycobacterium phage Che9d] Length = 424 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 S T H+ RH+ AT L SNG D ++ ILGH+ ++Y + + R Sbjct: 359 SLTLHSARHTAATVLRSNGVDEQTRMEILGHNSPEVARVYAHADQAR 405 >gi|325298304|ref|YP_004258221.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317857|gb|ADY35748.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 435 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F T + LS G L ++ ++GH +STTQIY + +++ E Sbjct: 349 TYHMARHNFGTLITLSQGVPLETVCQMMGHKNMSTTQIYARLTHQKVDE 397 >gi|319938557|ref|ZP_08012950.1| integrase [Coprobacillus sp. 29_1] gi|319806321|gb|EFW02997.1| integrase [Coprobacillus sp. 29_1] Length = 60 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS +S T Sbjct: 5 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISIT 39 >gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999] Length = 383 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 S H LRH+F ++L+SN L S+Q + H+ STT Y V+ + E Sbjct: 325 SVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQDTLRE 374 >gi|167752976|ref|ZP_02425103.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216] gi|167659290|gb|EDS03420.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216] Length = 415 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ ME+ Sbjct: 347 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEV 399 >gi|154491554|ref|ZP_02031180.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC 43184] gi|154088355|gb|EDN87400.1| hypothetical protein PARMER_01165 [Parabacteroides merdae ATCC 43184] Length = 411 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RHS+AT + L+NG + ++ +LGHS + TQ Y V Sbjct: 347 TLTTHVARHSYATSVCLANGVSIENVAKMLGHSNIKMTQHYARV 390 >gi|225374562|ref|ZP_03751783.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM 16841] gi|225213622|gb|EEG95976.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM 16841] gi|291524369|emb|CBK89956.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 403 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ + + Q Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFGVVNGAFQQ 399 >gi|189463338|ref|ZP_03012123.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136] gi|189429957|gb|EDU98941.1| hypothetical protein BACCOP_04055 [Bacteroides coprocola DSM 17136] Length = 285 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 376 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H +R +F T L+ +G + + + +LGH+ +STT IYT+ +R +E Sbjct: 304 HDIRRTFTTILIDSGANAKVVAKLLGHTNVSTTLNIYTDTYEERQIE 350 >gi|153951667|ref|YP_001398132.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. doylei 269.97] gi|152939113|gb|ABS43854.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. doylei 269.97] Length = 116 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 66 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIY 101 >gi|313158622|gb|EFR58015.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 411 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 4/53 (7%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEI 52 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ ME+ Sbjct: 343 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEV 395 >gi|302384969|ref|YP_003820791.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195597|gb|ADL03168.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 281 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+ RH FA + L+ D+ + ++GH + TT+IY +S+ ++ D+ Sbjct: 224 TVYPHSFRHRFAKNFLACFNDISLLADLMGHESIETTRIYLTRSSQEQQQLLDE 277 >gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 384 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTHPSIT 61 H LRHS A+ LL G +++ IQ +LGHS +S T + Y+++ + ++E +++ Sbjct: 318 HDLRHSAASILLCMGVNIKVIQELLGHSDISITLRTYSHLLPSMQQEVIETWNEVFREDD 377 Query: 62 QKDKK 66 Q+D+K Sbjct: 378 QEDEK 382 >gi|154500417|ref|ZP_02038455.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC 29799] gi|150270769|gb|EDM98061.1| hypothetical protein BACCAP_04089 [Bacteroides capillosus ATCC 29799] Length = 231 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 15/27 (55%), Positives = 21/27 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH 32 H LRH+FAT L NG D++++ S+LGH Sbjct: 172 HDLRHTFATTALQNGVDVKTVSSMLGH 198 >gi|37520018|ref|NP_923395.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35211010|dbj|BAC88390.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] Length = 282 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQTHP 58 TA LR+S+A HLL G D +Q++LG L +TQ ++ + +YD HP Sbjct: 221 TAQQLRNSYAAHLLEGGTDPVDVQALLG---LRSTQAAAGRQPTVAQGLRRVYDLAHP 275 >gi|26554273|ref|NP_758207.1| integrase [Mycoplasma penetrans HF-2] gi|26454282|dbj|BAC44611.1| integrase [Mycoplasma penetrans HF-2] Length = 272 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY + EI D+ Sbjct: 219 HSFRHRFAKNFLEKYNDISLLADLMGHESIETTRIYLRKTASEQQEIVDK 268 >gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 28/42 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+ T+ + +G D+ +Q I GH ++TT+ YT+++ K Sbjct: 309 HDLRHTCVTNFVESGLDISVVQKIAGHKHVTTTENYTHLSKK 350 >gi|16132134|ref|NP_418733.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. MG1655] gi|24115412|ref|NP_709922.1| tyrosine recombinase [Shigella flexneri 2a str. 301] gi|26251200|ref|NP_757240.1| tyrosine recombinase [Escherichia coli CFT073] gi|30065432|ref|NP_839603.1| tyrosine recombinase [Shigella flexneri 2a str. 2457T] gi|89111025|ref|AP_004805.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. W3110] gi|157163757|ref|YP_001461075.1| tyrosine recombinase [Escherichia coli HS] gi|170682577|ref|YP_001746750.1| tyrosine recombinase [Escherichia coli SMS-3-5] gi|191167181|ref|ZP_03029001.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A] gi|193063696|ref|ZP_03044784.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22] gi|193070101|ref|ZP_03051047.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019] gi|194426551|ref|ZP_03059105.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171] gi|209921777|ref|YP_002295861.1| tyrosine recombinase [Escherichia coli SE11] gi|218556844|ref|YP_002389758.1| tyrosine recombinase [Escherichia coli IAI1] gi|218561489|ref|YP_002394402.1| tyrosine recombinase [Escherichia coli S88] gi|218703011|ref|YP_002410640.1| tyrosine recombinase [Escherichia coli IAI39] gi|218707980|ref|YP_002415499.1| tyrosine recombinase [Escherichia coli UMN026] gi|237704054|ref|ZP_04534535.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|253775069|ref|YP_003037900.1| tyrosine recombinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164234|ref|YP_003047344.1| tyrosine recombinase [Escherichia coli B str. REL606] gi|256019941|ref|ZP_05433806.1| tyrosine recombinase [Shigella sp. D9] gi|256025242|ref|ZP_05439107.1| tyrosine recombinase [Escherichia sp. 4_1_40B] gi|260847129|ref|YP_003224907.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O103:H2 str. 12009] gi|260858481|ref|YP_003232372.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O26:H11 str. 11368] gi|260871033|ref|YP_003237435.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O111:H- str. 11128] gi|293402970|ref|ZP_06647067.1| tyrosine recombinase [Escherichia coli FVEC1412] gi|293407997|ref|ZP_06651837.1| conserved hypothetical protein [Escherichia coli B354] gi|293417777|ref|ZP_06660399.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185] gi|293476576|ref|ZP_06664984.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088] gi|298378498|ref|ZP_06988382.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302] gi|301019652|ref|ZP_07183809.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1] gi|306815503|ref|ZP_07449652.1| tyrosine recombinase [Escherichia coli NC101] gi|307312916|ref|ZP_07592544.1| integrase family protein [Escherichia coli W] gi|312966032|ref|ZP_07780258.1| phage integrase family protein [Escherichia coli 2362-75] gi|312969991|ref|ZP_07784173.1| phage integrase family protein [Escherichia coli 1827-70] gi|331650434|ref|ZP_08351506.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605] gi|331650787|ref|ZP_08351815.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718] gi|331660932|ref|ZP_08361864.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206] gi|331665963|ref|ZP_08366857.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143] gi|331666126|ref|ZP_08367007.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271] gi|331671426|ref|ZP_08372224.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280] gi|331680416|ref|ZP_08381075.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591] gi|332281083|ref|ZP_08393496.1| tyrosine recombinase/inversion of on/off regulator of fimA [Shigella sp. D9] gi|83286952|sp|P0ADH8|FIME_ECOL6 RecName: Full=Type 1 fimbriae regulatory protein fimE gi|83286953|sp|P0ADH7|FIME_ECOLI RecName: Full=Type 1 fimbriae regulatory protein fimE gi|83286954|sp|P0ADH9|FIME_SHIFL RecName: Full=Type 1 fimbriae regulatory protein fimE gi|26111632|gb|AAN83814.1|AE016771_325 Type 1 fimbriae Regulatory protein fimE [Escherichia coli CFT073] gi|537154|gb|AAA97209.1| recombinase involved in phase variation [Escherichia coli str. K-12 substr. MG1655] gi|581086|emb|CAA27561.1| fimE [Escherichia coli] gi|1790768|gb|AAC77269.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K-12 substr. MG1655] gi|24054724|gb|AAN45629.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 301] gi|30043696|gb|AAP19415.1| recombinase; regulator for fimA [Shigella flexneri 2a str. 2457T] gi|85677056|dbj|BAE78306.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli str. K12 substr. W3110] gi|157069437|gb|ABV08692.1| type 1 fimbriae regulatory protein FimE [Escherichia coli HS] gi|170520295|gb|ACB18473.1| type 1 fimbriae regulatory protein FimE [Escherichia coli SMS-3-5] gi|190902838|gb|EDV62567.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B7A] gi|192930683|gb|EDV83289.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E22] gi|192956554|gb|EDV87011.1| type 1 fimbriae regulatory protein FimE [Escherichia coli E110019] gi|194415290|gb|EDX31558.1| type 1 fimbriae regulatory protein FimE [Escherichia coli B171] gi|209915036|dbj|BAG80110.1| type-1 fimbriae regulator FimE [Escherichia coli SE11] gi|218363613|emb|CAR01270.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli IAI1] gi|218368258|emb|CAR06075.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli S88] gi|218372997|emb|CAR20882.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli IAI39] gi|218435077|emb|CAR16031.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli UMN026] gi|226901966|gb|EEH88225.1| tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|242379830|emb|CAQ34661.1| regulator for fimA [Escherichia coli BL21(DE3)] gi|253326113|gb|ACT30715.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976137|gb|ACT41808.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli B str. REL606] gi|253980293|gb|ACT45963.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli BL21(DE3)] gi|257757130|dbj|BAI28632.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O26:H11 str. 11368] gi|257762276|dbj|BAI33773.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O103:H2 str. 12009] gi|257767389|dbj|BAI38884.1| tyrosine recombinase/inversion of on/off regulator of fimA [Escherichia coli O111:H- str. 11128] gi|281181464|dbj|BAI57794.1| type 1 fimbriae regulator [Escherichia coli SE15] gi|281603521|gb|ADA76505.1| Type 1 fimbriae regulatory protein fimE [Shigella flexneri 2002017] gi|291321029|gb|EFE60471.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B088] gi|291429885|gb|EFF02899.1| tyrosine recombinase [Escherichia coli FVEC1412] gi|291430495|gb|EFF03493.1| type 1 fimbriae regulatory protein fimE [Escherichia coli B185] gi|291472248|gb|EFF14730.1| conserved hypothetical protein [Escherichia coli B354] gi|298280832|gb|EFI22333.1| type 1 fimbriae regulatory protein fimE [Escherichia coli FVEC1302] gi|299882113|gb|EFI90324.1| type 1 fimbriae regulatory protein FimE [Escherichia coli MS 196-1] gi|305851165|gb|EFM51620.1| tyrosine recombinase [Escherichia coli NC101] gi|306907084|gb|EFN37591.1| integrase family protein [Escherichia coli W] gi|310337489|gb|EFQ02600.1| phage integrase family protein [Escherichia coli 1827-70] gi|312289275|gb|EFR17169.1| phage integrase family protein [Escherichia coli 2362-75] gi|313649987|gb|EFS14405.1| phage integrase family protein [Shigella flexneri 2a str. 2457T] gi|315063615|gb|ADT77942.1| tyrosine recombinase/inversion of on/off regulator of FimA [Escherichia coli W] gi|320200578|gb|EFW75164.1| type 1 fimbriae regulatory protein FimE [Escherichia coli EC4100B] gi|323157662|gb|EFZ43768.1| phage integrase family protein [Escherichia coli EPECa14] gi|323163313|gb|EFZ49141.1| phage integrase family protein [Escherichia coli E128010] gi|323182028|gb|EFZ67439.1| phage integrase family protein [Escherichia coli 1357] gi|323189837|gb|EFZ75115.1| phage integrase family protein [Escherichia coli RN587/1] gi|323380304|gb|ADX52572.1| integrase family protein [Escherichia coli KO11] gi|323935245|gb|EGB31598.1| phage integrase [Escherichia coli E1520] gi|323939682|gb|EGB35886.1| phage integrase [Escherichia coli E482] gi|323945829|gb|EGB41874.1| phage integrase [Escherichia coli H120] gi|323950597|gb|EGB46475.1| phage integrase [Escherichia coli H252] gi|323955384|gb|EGB51154.1| phage integrase [Escherichia coli H263] gi|323960179|gb|EGB55822.1| phage integrase [Escherichia coli H489] gi|323975621|gb|EGB70718.1| phage integrase [Escherichia coli TW10509] gi|324118516|gb|EGC12409.1| phage integrase [Escherichia coli E1167] gi|331040828|gb|EGI12986.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M605] gi|331051241|gb|EGI23290.1| type 1 fimbriae regulatory protein FimE [Escherichia coli M718] gi|331051974|gb|EGI24013.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA206] gi|331057014|gb|EGI29008.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA143] gi|331066337|gb|EGI38214.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA271] gi|331071271|gb|EGI42628.1| type 1 fimbriae regulatory protein FimE [Escherichia coli TA280] gi|331071879|gb|EGI43215.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H591] gi|332103435|gb|EGJ06781.1| tyrosine recombinase/inversion of on/off regulator of fimA [Shigella sp. D9] gi|332750457|gb|EGJ80867.1| phage integrase family protein [Shigella flexneri 2747-71] gi|332752103|gb|EGJ82495.1| phage integrase family protein [Shigella flexneri K-671] gi|332764696|gb|EGJ94925.1| phage integrase family protein [Shigella flexneri 2930-71] gi|333010405|gb|EGK29838.1| phage integrase family protein [Shigella flexneri VA-6] gi|333011280|gb|EGK30694.1| phage integrase family protein [Shigella flexneri K-272] gi|333012078|gb|EGK31461.1| phage integrase family protein [Shigella flexneri K-304] gi|333012176|gb|EGK31558.1| phage integrase family protein [Shigella flexneri K-227] Length = 198 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185 >gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 340 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54 H LRH A+ LLS L ++Q LGH R++TT Y + + R +EI D Sbjct: 284 HALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAHTLPSSVARAVEILD 335 >gi|262384781|ref|ZP_06077913.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262293497|gb|EEY81433.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 113 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++T+RHSFA L + I +LGH + TTQIY S M + +++ Sbjct: 47 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 100 >gi|239736500|gb|ACS12989.1| class 1 integrase IntI1 [Pseudomonas aeruginosa] Length = 298 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 16/24 (66%), Positives = 20/24 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQ 27 T HTLRHSFAT LL +G D+R++Q Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQ 298 >gi|238023353|ref|YP_002907586.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880406|gb|ACR32736.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 563 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 505 SPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 556 >gi|222430247|gb|ACM50312.1| integrase [Escherichia coli] Length = 298 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 16/24 (66%), Positives = 20/24 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQ 27 T HTLRHSFAT LL +G D+R++Q Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQ 298 >gi|111025266|ref|YP_707686.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110824245|gb|ABG99528.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 410 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LR + T L+ G +L ILGH+R+ +++ Y +++ + E Y Sbjct: 347 TFHALRRTLGTRLIETGTELPMTAQILGHARIDSSKRYIALDTDSLRECY 396 >gi|46487329|gb|AAS99053.1| Tgh108 [Campylobacter jejuni] Length = 107 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A L + G +L IQ IL H+ L+TT IY Sbjct: 57 HLLRHTLAMRLTAKGTNLVVIQKILRHANLNTTTIY 92 >gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp. JA-3-3Ab] gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 22/39 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RHSFAT LL G IQ +LGH+ + T YT Sbjct: 250 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYT 288 >gi|58616515|ref|YP_195644.1| putative integrase (fragment) [Azoarcus sp. EbN1] gi|56315977|emb|CAI10620.1| putative integrase (fragment) [Aromatoleum aromaticum EbN1] Length = 163 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +H LRH+ A L+ +G L+ + +L H L+TT IY +++ ++ + Sbjct: 107 SHALRHTLACRLVEHGSSLKEVADLLRHRSLNTTLIYAKLDTPKLSTV 154 >gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 360 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H RH+FAT L N D ++ ++GHS TT ++Y + N K++ E D+ Sbjct: 309 HDTRHTFATLLSDNVADKDAVIKMIGHSSYKTTSEVYVHKNIKKLKEAVDE 359 >gi|332975722|gb|EGK12605.1| phage integrase family site-specific recombinase [Psychrobacter sp. 1501(2011)] Length = 772 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYDQ 55 T R +F + +L NG +R IQ +LGHS L TT Y + NS M+I D+ Sbjct: 612 TISRFRPTFVSEMLRNGVTVREIQLMLGHSSLQTTLGYIDSLDFNSMSRMKINDE 666 >gi|331681295|ref|ZP_08381932.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299] gi|331081516|gb|EGI52677.1| type 1 fimbriae regulatory protein FimE [Escherichia coli H299] Length = 198 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWER 185 >gi|283786567|ref|YP_003366432.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168] gi|282950021|emb|CBG89650.1| fimbrial regulatory protein FimE [Citrobacter rodentium ICC168] Length = 198 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH--PSI 60 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ I Sbjct: 133 THPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNAARFAGLWEKNSLLDEI 192 Query: 61 TQKDKK 66 Q+ KK Sbjct: 193 FQEKKK 198 >gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319] gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319] Length = 391 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIYD 54 S + H RHSF L G + SI ++GH+ +++TQIY + + R++E Y+ Sbjct: 332 SLSFHVGRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDRLIEKYE 391 >gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 377 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 HT+RH+FAT L G ++I +LGH+ +S T YT+V Sbjct: 318 VHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHV 358 >gi|291561889|emb|CBL40692.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 286 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + +LGH + TT+IY +SK + D+ Sbjct: 232 PHSFRHRFAKNFLALSSDISLLADLLGHESIETTRIYLTRSSKEQKLLLDK 282 >gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479] gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479] Length = 406 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTHPSIT 61 H LRH++AT + G + +Q +LGH+ + TT Y +V + ++ + Q P ++ Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVS 395 Query: 62 QKDKK 66 +K +K Sbjct: 396 KKGRK 400 >gi|260590814|ref|ZP_05856272.1| integrase [Prevotella veroralis F0319] gi|260537300|gb|EEX19917.1| integrase [Prevotella veroralis F0319] Length = 276 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42 + TAH RH+FAT + L NG + ++ +LGHS++ TT+ Y Sbjct: 226 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYA 268 >gi|228969912|ref|ZP_04130637.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789803|gb|EEM37660.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str. T04001] Length = 64 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 5 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 56 >gi|229192893|ref|ZP_04319850.1| Integrase [Bacillus cereus ATCC 10876] gi|228590503|gb|EEK48365.1| Integrase [Bacillus cereus ATCC 10876] Length = 111 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H +RH++A + DL + LGH+ + T IYTN+N+++ E Sbjct: 53 SPHQMRHTYAINHYKENKDLVLLHDQLGHTSVEVTSIYTNINNEKKRE 100 >gi|254523064|ref|ZP_05135119.1| site-specific recombinase, phage integrase family [Stenotrophomonas sp. SKA14] gi|219720655|gb|EED39180.1| site-specific recombinase, phage integrase family [Stenotrophomonas sp. SKA14] Length = 329 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+F H++ G LR +Q + GH+ +TT+ Y Sbjct: 276 HRLRHTFCAHMVMAGVPLRRVQILAGHADYATTEKY 311 >gi|325299287|ref|YP_004259204.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318840|gb|ADY36731.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 396 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+F T ++S G + SI ++GH+ + TTQ Y V ++ E Sbjct: 339 HQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISE 384 >gi|317123482|ref|YP_004097594.1| integrase [Intrasporangium calvum DSM 43043] gi|315587570|gb|ADU46867.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 399 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H RH+ AT LL G DLR++ SI+G + ++T Q Y + S Sbjct: 354 HDARHTAATLLLVQGVDLRTVMSIMGWTEMATAQRYVHAVS 394 >gi|290473457|ref|YP_003466324.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] gi|289172757|emb|CBJ79528.1| tyrosine recombinase, regulator of fimA [Xenorhabdus bovienii SS-2004] Length = 197 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 25/51 (49%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS L + G D R IQ LGH + T YT N +R + + Q Sbjct: 133 PHKLRHSCGFELANQGLDTRLIQDYLGHRNIRHTMHYTASNPERFQKAWQQ 183 >gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA] gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A] gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA] gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A] Length = 410 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|182413035|ref|YP_001818101.1| integrase family protein [Opitutus terrae PB90-1] gi|182414799|ref|YP_001819865.1| integrase family protein [Opitutus terrae PB90-1] gi|182416162|ref|YP_001821228.1| integrase family protein [Opitutus terrae PB90-1] gi|182416192|ref|YP_001821258.1| integrase family protein [Opitutus terrae PB90-1] gi|177840249|gb|ACB74501.1| integrase family protein [Opitutus terrae PB90-1] gi|177842013|gb|ACB76265.1| integrase family protein [Opitutus terrae PB90-1] gi|177843376|gb|ACB77628.1| integrase family protein [Opitutus terrae PB90-1] gi|177843406|gb|ACB77658.1| integrase family protein [Opitutus terrae PB90-1] Length = 432 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH+LRHS+A L + +++I LGH + TT IY + K + ++ Sbjct: 378 AHSLRHSWAIRALEHDQPIKAIADALGHRYIDTTYIYAKADLKTLRQV 425 >gi|149913568|ref|ZP_01902101.1| Integrase [Roseobacter sp. AzwK-3b] gi|149812688|gb|EDM72517.1| Integrase [Roseobacter sp. AzwK-3b] Length = 196 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 32/49 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 ++H+ R ++ T L + G +R + + GHS +STTQ Y +VN++++ E Sbjct: 143 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAEQLSE 191 >gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 275 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 27/42 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH+FA+HL+ G L +++ +LGH + Y++++ Sbjct: 205 TTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLS 246 >gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia thailandensis E264] gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia thailandensis E264] Length = 159 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+ G L ++ +LGHS +S T+ Y +++ Sbjct: 106 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLS 145 >gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 410 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RHS+AT + LSN + ++ +LGH + TTQIY + ++++ Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 388 >gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 332 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ A LL G D I LGH + TTQIY + + E +T+P Sbjct: 257 SPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311 >gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 410 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|313680019|ref|YP_004057758.1| integrase family protein [Oceanithermus profundus DSM 14977] gi|313152734|gb|ADR36585.1| integrase family protein [Oceanithermus profundus DSM 14977] Length = 345 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH LRH+ T GDL +LGH+ ++T+ IY ++ + + + D+ Sbjct: 290 AHMLRHTAGTRFYRATGDLHVTARLLGHANVNTSAIYAKMDLEGLRDAVDR 340 >gi|300781921|ref|YP_003739156.1| phage integrase [Erwinia billingiae Eb661] gi|308186479|ref|YP_003930610.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|299060187|emb|CAX53378.1| phage integrase [Erwinia billingiae Eb661] gi|308056989|gb|ADO09161.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 327 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + HT RH THL G L + + GH L+TTQIY +++ + + Sbjct: 258 STHTFRHLRLTHLARAGWKLHELATYAGHRDLTTTQIYIHLSGRDL 303 >gi|298244308|ref|ZP_06968114.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297551789|gb|EFH85654.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 378 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRHS AT +LS G + +Q ILGHSR++ T +Y++V Sbjct: 321 HDLRHSAATLMLSMGVHPKIVQEILGHSRINMTLDVYSHV 360 >gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 410 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1] gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++A+HL G L+ IQ ++GH + T+ Y +++ Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLS 352 >gi|159184660|ref|NP_526319.1| phage-related integrase [Agrobacterium tumefaciens str. C58] gi|17739597|gb|AAL42205.1| phage-related integrase [Agrobacterium tumefaciens str. C58] Length = 388 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH F + L SNG + +IQ + GH+ L TQ Y ++ Sbjct: 289 HILRHEFCSRLASNGENAAAIQKLAGHATLLVTQRYVHL 327 >gi|290890755|ref|ZP_06553822.1| hypothetical protein AWRIB429_1212 [Oenococcus oeni AWRIB429] gi|290479527|gb|EFD88184.1| hypothetical protein AWRIB429_1212 [Oenococcus oeni AWRIB429] Length = 175 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H RH++AT + +G D++ +Q LGH+ + TT QIY V +K+ E Sbjct: 108 HGFRHTYATLAVQSGMDIKQLQYQLGHNDVHTTLQIYAEVTNKQKTE 154 >gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6] gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6] Length = 410 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233] gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233] gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233] gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 334 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+ T L +G L +IQ+ GH + TT+IY ++ +++ Y Sbjct: 270 TCHELRHTCFTRLRESGMALEAIQAQAGHVSIETTKIYLHLAPDWLVDEY 319 >gi|83649365|ref|YP_437800.1| integrase [Hahella chejuensis KCTC 2396] gi|83637408|gb|ABC33375.1| Integrase [Hahella chejuensis KCTC 2396] Length = 337 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+H + N G++ ++ ILGH+ L T Y + Sbjct: 282 HILRHTFASHYMINDGNILKLKYILGHASLDMTIRYAKL 320 >gi|88810969|ref|ZP_01126225.1| phage integrase family protein [Nitrococcus mobilis Nb-231] gi|88791508|gb|EAR22619.1| phage integrase family protein [Nitrococcus mobilis Nb-231] Length = 207 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + AT + +LR++Q +LGH++L +T Y + +EI +QT Sbjct: 155 HSLRRTKATLIYRRTRNLRAVQLLLGHTKLESTVRYLGIEVDDALEIAEQT 205 >gi|322433743|ref|YP_004215955.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321161470|gb|ADW67175.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 304 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRH++ T L++ G D+ ++ ++GHS ++TT Y + Sbjct: 245 TNVHRLRHTYGTRLVNAGMDILQLKELMGHSSVATTLNYAKI 286 >gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2] gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2] gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2] gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 410 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|187779931|ref|ZP_02996404.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC 15579] gi|187773556|gb|EDU37358.1| hypothetical protein CLOSPO_03527 [Clostridium sporogenes ATCC 15579] Length = 308 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +T R++FAT L NG + IQ LGH+ + T+ Y N+ Sbjct: 255 VNTFRNTFATMALKNGAGIYLIQKCLGHADIKMTERYINL 294 >gi|149184593|ref|ZP_01862911.1| phage integrase [Erythrobacter sp. SD-21] gi|148831913|gb|EDL50346.1| phage integrase [Erythrobacter sp. SD-21] Length = 154 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 26/41 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+ AT LL DL + + +LGHS +S T+ Y +V S Sbjct: 99 HDLRHTAATELLRASKDLTATRDLLGHSDVSQTERYAHVIS 139 >gi|60683282|ref|YP_213426.1| putative phage integrase [Bacteroides fragilis NCTC 9343] gi|60494716|emb|CAH09518.1| putative phage integrase [Bacteroides fragilis NCTC 9343] Length = 409 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA + G L ++Q +LGH+ + +TQ+Y + + ++ E D+ Sbjct: 345 TPHIGRHTFAVLAILKGMPLETLQKVLGHNSILSTQVYAELINPKVGEDTDK 396 >gi|119025957|ref|YP_909802.1| phage integrase [Bifidobacterium adolescentis ATCC 15703] gi|118765541|dbj|BAF39720.1| phage integrase [Bifidobacterium adolescentis ATCC 15703] Length = 435 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 H+ RH+ AT L G D + +I+GHSR+STT +IYT+V R++ D +I Sbjct: 378 HSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVERAI 433 >gi|56130716|ref|YP_145619.1| putative integrase/recombinase [Ralstonia metallidurans CH34] gi|56068706|emb|CAI11268.1| putative integrase/recombinase [Cupriavidus metallidurans CH34] Length = 137 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 24/43 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H LRHS A+H G D+R IQ L H+ + TT IY + R Sbjct: 74 HWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR 116 >gi|325663344|ref|ZP_08151794.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470798|gb|EGC74028.1| hypothetical protein HMPREF0490_02535 [Lachnospiraceae bacterium 4_1_37FAA] Length = 463 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+LRHS T+ L NGGD++++Q GHS++ T IY+++ + +R E++++ Sbjct: 356 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVDMVTDIYSHIIDEDRRRNAELFEE 410 >gi|325271510|ref|ZP_08138027.1| tyrosine recombinase, phage integrase family protein [Pseudomonas sp. TJI-51] gi|324103357|gb|EGC00687.1| tyrosine recombinase, phage integrase family protein [Pseudomonas sp. TJI-51] Length = 313 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 26/40 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 AH LRH+ A+ + + G + I+ LGH L+TTQIY ++ Sbjct: 266 AHVLRHTAASVMFARGVPILQIKENLGHEDLATTQIYAHL 305 >gi|323693003|ref|ZP_08107224.1| hypothetical protein HMPREF9475_02087 [Clostridium symbiosum WAL-14673] gi|323503004|gb|EGB18845.1| hypothetical protein HMPREF9475_02087 [Clostridium symbiosum WAL-14673] Length = 299 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52 H LRH FA D+ + I+GHS + TT+IYT + K R ME+ Sbjct: 245 HNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKEYRRQMEL 294 >gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 378 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HT RH+ THL+ G DL ++Q + GH L+ Y + N + + D I Sbjct: 320 HTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAHANGEHIDAAMDNLEQRI 374 >gi|295101383|emb|CBK98928.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 403 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390 >gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 398 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH++ T+LL G D +++Q + GH TT IY V R E+ + ++T Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNRPEELIGVVNRALT 398 >gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53 T++T+RHSFA L + I +LGH + TTQIY T VNS +Y Sbjct: 244 VTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQIYLRSFSLGKMTEVNSACFGGVY 303 Query: 54 D 54 + Sbjct: 304 N 304 >gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 32/46 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSF++ L+++G + + +LGH+++ TT Y ++ ++ +++ Sbjct: 330 HDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQTLLD 375 >gi|204600310|gb|ACI01670.1| integrase [Escherichia coli] Length = 298 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 16/24 (66%), Positives = 20/24 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQ 27 T HTLRHSFAT LL +G D+R++Q Sbjct: 275 TPHTLRHSFATALLRSGYDIRTVQ 298 >gi|58616226|ref|YP_195355.1| integrase/recombinase protein [Azoarcus sp. EbN1] gi|56315687|emb|CAI10331.1| probable integrase/recombinase protein [Aromatoleum aromaticum EbN1] Length = 373 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH+ A+ + G +L S++ LGHS ++TT+IY + Sbjct: 312 HLYRHAAASRWIRQGANLLSVRDQLGHSSVTTTEIYAH 349 >gi|309776171|ref|ZP_07671162.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53] gi|308916122|gb|EFP61871.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53] Length = 388 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 325 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 375 >gi|302336436|ref|YP_003801643.1| integrase family protein [Olsenella uli DSM 7084] gi|301320276|gb|ADK68763.1| integrase family protein [Olsenella uli DSM 7084] Length = 268 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY + EI D+ Sbjct: 215 HSFRHLFAKNFLERYNDIALLADLMGHESIETTRIYLRRTASEQREIVDR 264 >gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19] gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19] Length = 410 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 410 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTN-VNS--KRMMEIYDQT 56 +S H LRH++A++L S+G D+ +++ +LGHS + TQ Y + VN KR + + D+ Sbjct: 305 ISIRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVNGVLKRAVCVADEV 364 >gi|116625064|ref|YP_827220.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228226|gb|ABJ86935.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 406 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 20/38 (52%), Positives = 24/38 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RHS T L G D IQ +LGHS+LSTT+ YT+ Sbjct: 326 HDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTH 363 >gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1] gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++A+HL G L+ IQ ++GH + T+ Y +++ Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLS 352 >gi|305681466|ref|ZP_07404273.1| site-specific recombinase, phage integrase family [Corynebacterium matruchotii ATCC 14266] gi|305659671|gb|EFM49171.1| site-specific recombinase, phage integrase family [Corynebacterium matruchotii ATCC 14266] Length = 411 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 ++TT H LRH +A+ L+ +G + +Q +LGHS +TT +Y ++ E+ D Sbjct: 335 VTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAHLWPGAEDEVRD 389 >gi|281424440|ref|ZP_06255353.1| site-specific recombinase, phage integrase family [Prevotella oris F0302] gi|281401439|gb|EFB32270.1| site-specific recombinase, phage integrase family [Prevotella oris F0302] Length = 285 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|227533999|ref|ZP_03964048.1| site-specific recombinase, phage integrase family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188376|gb|EEI68443.1| site-specific recombinase, phage integrase family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 422 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+++T L G + +I + L HS ++TT+IY N Sbjct: 351 HKLRHTYSTLALEGGATMEAISAALTHSDVATTRIYVN 388 >gi|261366421|ref|ZP_05979304.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] gi|282571682|gb|EFB77217.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] Length = 403 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390 >gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 285 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 ++ T H LRHS AT L++ G L +I+ LGH + TT Y V+ + Sbjct: 226 VTCTLHQLRHSHATELVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQ 272 >gi|331083472|ref|ZP_08332584.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404165|gb|EGG83713.1| hypothetical protein HMPREF0992_01508 [Lachnospiraceae bacterium 6_1_63FAA] Length = 477 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+LRHS T+ L NGGD++++Q GHS++ T +Y+++ + +R E++++ Sbjct: 370 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVDMVTDVYSHIIDEDRRRNAELFEE 424 >gi|312602397|ref|YP_004022242.1| hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454] gi|312169711|emb|CBW76723.1| Hypothetical protein RBRH_01890 [Burkholderia rhizoxinica HKI 454] Length = 182 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + +AH LRH+ +H G DLR+++ LGH L+TT +Y Sbjct: 107 VRASAHWLRHTAGSHQADAGLDLRTVRDNLGHMSLTTTSLY 147 >gi|304383194|ref|ZP_07365667.1| phage integrase family site-specific recombinase [Prevotella marshii DSM 16973] gi|304335665|gb|EFM01922.1| phage integrase family site-specific recombinase [Prevotella marshii DSM 16973] Length = 285 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|294010404|ref|YP_003543864.1| putative integrase [Sphingobium japonicum UT26S] gi|294012980|ref|YP_003546440.1| putative integrase [Sphingobium japonicum UT26S] gi|294023874|ref|YP_003547193.1| putative integrase [Sphingobium japonicum UT26S] gi|292673734|dbj|BAI95252.1| putative integrase [Sphingobium japonicum UT26S] gi|292676310|dbj|BAI97828.1| putative integrase [Sphingobium japonicum UT26S] gi|292677654|dbj|BAI99170.1| putative integrase [Sphingobium japonicum UT26S] Length = 463 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 23/63 (36%) Query: 4 TAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLSTTQI 40 + H LRHSFA H+L+ G L+ +Q +LGHS L+TT I Sbjct: 375 SPHQLRHSFAVHMLAMLIQRRLADAAAPVGAMEGYRQLVGDPLQQVQRLLGHSSLATTSI 434 Query: 41 YTN 43 Y + Sbjct: 435 YLD 437 >gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697] gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697] Length = 350 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRH+ A+H L G ++ +IQ ++GH+ + TT Y V+ Sbjct: 270 CHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFVS 310 >gi|237727393|ref|ZP_04557874.1| site-specific recombinase [Bacteroides sp. D4] gi|313146590|ref|ZP_07808783.1| site-specific recombinase [Bacteroides fragilis 3_1_12] gi|229434249|gb|EEO44326.1| site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|313135357|gb|EFR52717.1| site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 378 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+FA+ ++N L SI +LGH+ + TT+IY + Sbjct: 320 STHIARHTFASLAIANKVSLESIAKMLGHTDIRTTRIYAKI 360 >gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704] gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704] Length = 346 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 ++ H RH+ A HL +G DL I LGH +L TT IY + +++ Sbjct: 263 LNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTE 309 >gi|332828048|gb|EGK00770.1| hypothetical protein HMPREF9455_03044 [Dysgonomonas gadei ATCC BAA-286] Length = 453 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+H RH+ AT + LS G + ++ +LGHS ++TTQIY + + ++ Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKI 389 >gi|291530998|emb|CBK96583.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] gi|295104190|emb|CBL01734.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] gi|295115223|emb|CBL36070.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 403 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390 >gi|293386428|ref|YP_003540590.1| probable integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291201071|emb|CBJ48209.1| probable integrase/recombinase [Erwinia amylovora ATCC 49946] Length = 280 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T R SFA HL+ +G + IQ+++GH +T+ YT V Sbjct: 211 TTKTFRDSFAMHLVQHGVPKKVIQAMMGHKDEKSTEWYTQV 251 >gi|289644915|ref|ZP_06476959.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505281|gb|EFD26336.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 138 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 S T H LRH +AT L+S G + +Q LGH STT Sbjct: 70 SLTFHALRHCYATWLISEGVPVNVVQVALGHEHASTT 106 >gi|256842310|ref|ZP_05547814.1| integrase/site-specific recombinase [Parabacteroides sp. D13] gi|256736194|gb|EEU49524.1| integrase/site-specific recombinase [Parabacteroides sp. D13] Length = 205 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++T+RHSFA L + I +LGH + TTQIY S M + +++ Sbjct: 139 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 192 >gi|257064113|ref|YP_003143785.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791766|gb|ACV22436.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 451 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS AT LL+NG DL+++Q +GH+ + T Sbjct: 357 HELRHSQATLLLANGTDLKTVQDRMGHANGAIT 389 >gi|224282772|ref|ZP_03646094.1| phage integrase [Bifidobacterium bifidum NCIMB 41171] Length = 436 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 H+ RH+ AT L G D + +I+GHSR+STT +IYT+V R++ D +I Sbjct: 379 HSARHTTATILNRLGLDDVTRTAIMGHSRVSTTNEIYTHVELDRLVAATDGVERAI 434 >gi|188587530|ref|YP_001922726.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352489|gb|ACB86500.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 187 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTLR +F H NG D+ IQ+I HS S T Y + + + ++Y Sbjct: 135 HTLRKTFGYHAYINGVDISLIQNIFNHSAPSVTLRYIGIEQEDIDDVY 182 >gi|166033434|ref|ZP_02236263.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC 27755] gi|166026619|gb|EDR45376.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC 27755] Length = 403 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390 >gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 397 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH FA+ L+S G +L ++Q++L H + TQ Y +++ + + + Sbjct: 330 HDLRHHFASALVSAGTNLYTVQALLTHKSAAMTQRYAHLSDQALRD 375 >gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis] Length = 410 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 388 >gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] Length = 408 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T H RH+ A+ L G ++ +Q+ LGHS + TT +YT+V + E D Sbjct: 333 TPHGFRHTHASLLFEAGASMKQVQARLGHSNIKTTMNVYTHVTKEGKEETAD 384 >gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7] gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7] Length = 335 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRH+ AT + G D ++ ILGH L+TT+IYT+++++ + + + +P Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQA-AEANPL 319 Query: 60 ITQKDKKN 67 QK K+ Sbjct: 320 SGQKANKS 327 >gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 373 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 23/37 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T + LRH FAT LLS G DL ++ ++GHS + T Sbjct: 313 PTRMYDLRHLFATTLLSRGADLAAVSKMMGHSTVKLT 349 >gi|301162746|emb|CBW22293.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 410 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RHS+AT + LSN + ++ +LGH + TTQIY + ++++ Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 388 >gi|301309060|ref|ZP_07215005.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833086|gb|EFK63711.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFA L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|262384922|ref|ZP_06078045.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262293444|gb|EEY81389.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 113 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++T+RHSFA L + I +LGH + TTQIY S M + +++ Sbjct: 47 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 100 >gi|227534407|ref|ZP_03964456.1| possible DNA integration/recombination/invertion protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187961|gb|EEI68028.1| possible DNA integration/recombination/invertion protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 204 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RHS A+ L S G ++ +Q LGHS + TT IYT+V Sbjct: 145 TIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHV 186 >gi|188591802|ref|YP_001796401.1| integrase/recombinase [Cupriavidus taiwanensis] gi|170939197|emb|CAP64240.1| integrase/recombinase [Cupriavidus taiwanensis LMG 19424] Length = 416 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S +AH LRH+ +H+ DLR ++ GH+ +STT Y Sbjct: 353 SASAHWLRHTAGSHMTDRQVDLRYVRDNFGHASISTTSGY 392 >gi|134045674|ref|YP_001097160.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663299|gb|ABO34945.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 333 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN--SKRMM 50 H+LRH A LL G + ++ ILGHS + TT IY + +K+M+ Sbjct: 277 HSLRHGRAVALLDEGTSVEIVKEILGHSDVKTTMIYAHAKERTKKML 323 >gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1] gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1] gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 406 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++A+HL G L+ IQ ++GH + T+ Y +++ Sbjct: 334 HDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLS 373 >gi|218129010|ref|ZP_03457814.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697] gi|217988786|gb|EEC55104.1| hypothetical protein BACEGG_00583 [Bacteroides eggerthii DSM 20697] Length = 386 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT RH+ AT LL + L +I+ ILGH+ + TT+ Y ++N Sbjct: 316 HTGRHTAATLLLYHNTPLTTIKEILGHTNIRTTETYADINE 356 >gi|194466460|ref|ZP_03072447.1| integrase family protein [Lactobacillus reuteri 100-23] gi|194453496|gb|EDX42393.1| integrase family protein [Lactobacillus reuteri 100-23] Length = 365 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS LL++G D+ +I LGHS +STT Sbjct: 305 HSLRHSHVALLLADGVDIYAISKRLGHSEISTT 337 >gi|313678860|ref|YP_004056600.1| site-specific recombinase, phage integrase family [Mycoplasma bovis PG45] gi|20269997|gb|AAM18140.1|AF501255_1 site-specific tyrosine recombinase [Mycoplasma bovis] gi|312950298|gb|ADR24893.1| site-specific recombinase, phage integrase family [Mycoplasma bovis PG45] Length = 249 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LR SFA+ +L G + +Q +GHS ++TT Y ++ IY + Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFTYQQLDENENYRIYKK 243 >gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 364 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH LS T Y ++ Sbjct: 255 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHL 296 >gi|153811377|ref|ZP_01964045.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174] gi|149832504|gb|EDM87588.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174] Length = 425 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 M H RH+F T + +G D +++ I GHS T YT++ + + + Y+ Sbjct: 362 MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 415 >gi|147668845|ref|YP_001213663.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269793|gb|ABQ16785.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 231 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 2 STTAHTLRHSFATHL--LSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H LR +FA H L + GD LR +Q LGH ++TT Y V+ + E Y++ Sbjct: 166 NVSPHKLRDAFAVHAVKLDDSGDGLRLLQEHLGHQSITTTMKYRKVSGEEQKEWYEK 222 >gi|116622058|ref|YP_824214.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225220|gb|ABJ83929.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 406 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH R S A+ + +G +++ + ILGH S+T +Y V +R+ + Sbjct: 353 AHAFRRSHASRQIDSGANVKVVSDILGHRSSSSTSVYVRVALERLRAV 400 >gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093] gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093] Length = 292 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS A +L NG D ++Q +LGH+ L+ T Y +N+ Sbjct: 231 HRLRHSAAITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNT 271 >gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] Length = 375 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RH+FAT L+S +++Q +LGHS + T IYT++N+K E Sbjct: 316 TVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKE 365 >gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] Length = 321 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ AT L G L+ +Q LGHS ++TTQ Y Sbjct: 261 TPHWLRHTNATLALLQGASLQQVQESLGHSHINTTQRY 298 >gi|298375971|ref|ZP_06985927.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] gi|298267008|gb|EFI08665.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] Length = 371 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R ++AT + G D+R+IQS + H ++TTQ Y V Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 353 >gi|295110020|emb|CBL23973.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 397 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L + + + +Q I+GHS +S T Sbjct: 342 TPHTLRHTFCTRLANKNMNPKDLQYIMGHSNISIT 376 >gi|290770154|gb|ADD61913.1| putative protein [uncultured organism] Length = 403 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 T H LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 340 TPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 390 >gi|187928829|ref|YP_001899316.1| integrase family protein [Ralstonia pickettii 12J] gi|187725719|gb|ACD26884.1| integrase family protein [Ralstonia pickettii 12J] Length = 442 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEI 52 + H RH+ ATH L+ G +L +++ L H+ ++TT IY + KR +I Sbjct: 386 SPHWTRHTHATHALARGAELTTVRDNLRHASVATTSIYLQSDEVKRAHQI 435 >gi|20269995|gb|AAM18139.1|AF501254_1 site-specific tyrosine recombinase [Mycoplasma agalactiae] Length = 250 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LR SFA+ +L G + +Q +GHS ++TT Y ++ IY Sbjct: 193 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 242 >gi|310827527|ref|YP_003959884.1| Site-specific recombinase XerD [Eubacterium limosum KIST612] gi|308739261|gb|ADO36921.1| Site-specific recombinase XerD [Eubacterium limosum KIST612] Length = 399 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRHS A+ LL G ++ IQ LGHS ++TT IY+++ M+ + Sbjct: 329 HDLRHSCASILLRKGVQMKYIQEWLGHSNIATTADIYSHLEVSDMIPL 376 >gi|157368467|ref|YP_001476456.1| integrase family protein [Serratia proteamaculans 568] gi|157320231|gb|ABV39328.1| integrase family protein [Serratia proteamaculans 568] Length = 191 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 26/55 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ H LRH+ L G D R IQ LGH + T +YT N R ++ + Sbjct: 133 IAVHPHMLRHACGYALADKGADTRLIQDYLGHRNIQHTVLYTASNVGRFRALWGE 187 >gi|313667356|ref|YP_004049757.1| integrase family protein [Oceanithermus profundus DSM 14977] gi|313153987|gb|ADR37837.1| integrase family protein [Oceanithermus profundus DSM 14977] Length = 345 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AHTLRH T D+ + ++LGH + T+ +Y ++ R+ + + Sbjct: 291 AHTLRHLAGTRFYQASRDIHVVAALLGHENVGTSTVYAKMDRSRLRAVVE 340 >gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 297 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 26/45 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + + H RH+ A+H L NG + +Q LGH L+TT Y +V + Sbjct: 243 NVSPHWFRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKA 287 >gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 393 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ AT L+ G + + ILGH + T+IY + K+ +E Sbjct: 330 TYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLE 377 >gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis] gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis] Length = 373 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F T + G DL +Q++LGH+ + TT Y ++ + +D Sbjct: 315 HALRHTFGTAMAEAGVDLAVMQALLGHAHVDTTARYIHLTPTHVKAEFD 363 >gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] Length = 343 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH RH++A ++ NG DL ++Q + G + T + Y ++++ + +DQ P Sbjct: 277 TAHVYRHTWARSMVLNGADLFTLQKMGGWQDVRTMRRYVQMDTRDVRLSHDQNTP 331 >gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 32/49 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +A+ LRH++A +LL + I+ +LGH + T++ Y +V+++ M E+ Sbjct: 340 SAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREV 388 >gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] Length = 405 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRHS AT L N ++ IQ+ LGHS + TT +IY ++ ++ + D Sbjct: 348 HDLRHSCATILYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNRNDKSVVD 397 >gi|254820529|ref|ZP_05225530.1| prophage integrase [Mycobacterium intracellulare ATCC 13950] Length = 340 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 T H LRH++A+ +G DLR +Q +GHS + T IY+++ S + Sbjct: 265 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDEL 311 >gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4] Length = 335 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS A +L D+R + LGH+ + TT++Y ++ +E + P ++ Sbjct: 254 SPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMDPSEKLEAIEAVLPPALRR 313 Query: 64 DK 65 + Sbjct: 314 GR 315 >gi|189462830|ref|ZP_03011615.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136] gi|189430446|gb|EDU99430.1| hypothetical protein BACCOP_03529 [Bacteroides coprocola DSM 17136] Length = 406 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFAT L +G ++ I LGH + TTQIY Sbjct: 350 EVTTYVARHSFATILKKSGVNIGIISEALGHQDIKTTQIY 389 >gi|154500802|ref|ZP_02038840.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC 29799] gi|150270302|gb|EDM97628.1| hypothetical protein BACCAP_04487 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNS 46 H LRH+FAT LS+G D++++ S+LGH S T YT++ + Sbjct: 325 HDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITN 366 >gi|148377973|ref|YP_001256849.1| integrase-recombinase [Mycoplasma agalactiae PG2] gi|32189697|gb|AAO39842.1| Mar [Mycoplasma agalactiae] gi|148292019|emb|CAL59411.1| Integrase recombinase [Mycoplasma agalactiae PG2] Length = 249 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LR SFA+ +L G + +Q +GHS ++TT Y ++ IY Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241 >gi|2497412|sp|Q47036|INTL_ECOLX RecName: Full=Probable site-specific recombinase in afa region gi|639967|emb|CAA54111.1| int [Escherichia coli] Length = 246 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +S T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 ISVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|325168629|ref|YP_004280419.1| Phage integrase [Agrobacterium sp. H13-3] gi|325064352|gb|ADY68041.1| Phage integrase [Agrobacterium sp. H13-3] Length = 152 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H++R + A + G+LR++Q +LGH++L +T Y V + I +Q Sbjct: 100 HSMRRTKAAQIYKKTGNLRAVQILLGHTKLESTVRYLGVEVDDALRIAEQ 149 >gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 32/49 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +A+ LRH++A +LL + I+ +LGH + T++ Y +V+++ M E+ Sbjct: 340 SAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREV 388 >gi|298378096|ref|ZP_06988038.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19] gi|298265001|gb|EFI06672.1| site-specific recombinase IntIA [Bacteroides sp. 3_1_19] Length = 310 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFA L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFAMSLKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|291515341|emb|CBK64551.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 374 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFAT L +G ++ I LGH L TTQIY Sbjct: 328 EVTTYCARHSFATVLKKSGVNIGIISEALGHHSLKTTQIY 367 >gi|265763143|ref|ZP_06091711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255751|gb|EEZ27097.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 410 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RHS+AT + LSN + ++ +LGH + TTQIY + ++++ Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 388 >gi|255016624|ref|ZP_05288750.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7] Length = 198 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++T+RHSFA L + I +LGH + TTQIY S M + +++ Sbjct: 132 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 185 >gi|228911927|ref|ZP_04075666.1| Phage integrase [Bacillus thuringiensis IBL 200] gi|228847722|gb|EEM92637.1| Phage integrase [Bacillus thuringiensis IBL 200] Length = 319 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH A +L+ G +L+ I+ LGH + TT+ Y + R Sbjct: 262 TPHTCRHFMANYLMEKGVELKKIRDYLGHESIMTTERYLRERTSR 306 >gi|23683070|gb|AAN39385.1| integrase-recombinase [Mycoplasma agalactiae PG2] Length = 249 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LR SFA+ +L G + +Q +GHS ++TT Y ++ IY Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241 >gi|332652986|ref|ZP_08418731.1| putative prophage LambdaCh01, site-specific recombinase, phage integrase family [Ruminococcaceae bacterium D16] gi|332518132|gb|EGJ47735.1| putative prophage LambdaCh01, site-specific recombinase, phage integrase family [Ruminococcaceae bacterium D16] Length = 409 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNS 46 H LRH+FAT LS+G D++++ S+LGH S T YT++ + Sbjct: 325 HDLRHTFATMALSSGVDVKTLSSMLGHYSAGFTLDTYTHITN 366 >gi|301311134|ref|ZP_07217062.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300830708|gb|EFK61350.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFA L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM 17393] gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM 17393] Length = 408 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 386 >gi|160946220|ref|ZP_02093431.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270] gi|158447743|gb|EDP24738.1| hypothetical protein PEPMIC_00182 [Parvimonas micra ATCC 33270] Length = 173 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TT HTLRH+F T++ + G + +++Q ++GH+ ++ T Y Sbjct: 117 TTPHTLRHTFCTNMANAGMNSKALQYLMGHANITMTLNY 155 >gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 407 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ + Q + Sbjct: 343 TFHFARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNDKIRKDMQQLAGKLDD 402 Query: 63 KDKKN 67 D+ N Sbjct: 403 LDQWN 407 >gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 373 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT +L +G DL++I L H R+STT Y++V+ Sbjct: 317 HDLRHTHATLMLRSGVDLKTISKRLRHGRISTTADFYSHVD 357 >gi|254555199|ref|YP_003061616.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1] gi|254044126|gb|ACT60919.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum JDM1] Length = 384 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S T H RHS A+ L + G ++ +Q+ LGH ++TT +YT+V Sbjct: 323 SITVHGFRHSHASALFAAGATIKEVQTRLGHEDVATTLNVYTHV 366 >gi|224026709|ref|ZP_03645075.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM 18228] gi|224019945|gb|EEF77943.1| hypothetical protein BACCOPRO_03466 [Bacteroides coprophilus DSM 18228] Length = 319 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 260 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKI 306 >gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243] gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243] Length = 284 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLS 270 >gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 37.4 bits (85), Expect = 0.78, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 32/49 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +A+ LRH++A +LL + I+ +LGH + T++ Y +V+++ M E+ Sbjct: 340 SAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLHVHTRLMREV 388 >gi|291561890|emb|CBL40693.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 284 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH FA + + D+ + ILGH + TT+IY + +S +++Q Sbjct: 230 PHAFRHLFAKNFIEKCDDIALLSDILGHESIETTRIYLHKSSTEQQNLFNQ 280 >gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 322 Score = 37.4 bits (85), Expect = 0.78, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 28/43 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 AH LR + AT+ L + D+ +Q LGH+ ++TT+IY + ++ Sbjct: 269 AHALRATAATNALDHQADIAKVQEWLGHANIATTRIYDHRKTR 311 >gi|256840577|ref|ZP_05546085.1| integrase/site-specific recombinase [Parabacteroides sp. D13] gi|256737849|gb|EEU51175.1| integrase/site-specific recombinase [Parabacteroides sp. D13] Length = 205 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++T+RHSFA L + I +LGH + TTQIY S M + +++ Sbjct: 139 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 192 >gi|225021491|ref|ZP_03710683.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii ATCC 33806] gi|224945873|gb|EEG27082.1| hypothetical protein CORMATOL_01511 [Corynebacterium matruchotii ATCC 33806] Length = 382 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 ++TT H LRH +A+ L+ +G + +Q +LGHS +TT +Y ++ E+ D Sbjct: 306 VTTTFHALRHYYASKLIESGVSVSVVQRVLGHSSPATTLGVYAHLWPGAEDEVRD 360 >gi|150006793|ref|YP_001301536.1| integrase / site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|150007201|ref|YP_001301944.1| integrase / site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149935217|gb|ABR41914.1| integrase / site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149935625|gb|ABR42322.1| integrase / site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 310 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHSFA L + I +LGH + TTQIY Sbjct: 244 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIY 282 >gi|323479615|gb|ADX79054.1| phage integrase family protein [Enterococcus faecalis 62] Length = 389 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 330 HDLRHSNASIMLDSGENMKSIQEWLGHASYSTTANLYTHLTA 371 >gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 322 Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309 >gi|330998378|ref|ZP_08322202.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568484|gb|EGG50289.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 394 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R ++AT + G D+R+IQS + H ++TTQ Y V Sbjct: 336 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 376 >gi|326389185|ref|ZP_08210762.1| integrase domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206338|gb|EGD57178.1| integrase domain-containing protein [Novosphingobium nitrogenifigens DSM 19370] Length = 449 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 23/66 (34%) Query: 1 MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37 +S + H LRH+FA H+L+ G L+ +Q +LGH+ L+T Sbjct: 358 LSISPHQLRHTFAVHMLALLIQQRLREAALPAGPVESYRLILGDPLQQVQRLLGHASLTT 417 Query: 38 TQIYTN 43 T IY + Sbjct: 418 TYIYLD 423 >gi|319651080|ref|ZP_08005214.1| hypothetical protein HMPREF1013_01825 [Bacillus sp. 2_A_57_CT2] gi|317397250|gb|EFV77954.1| hypothetical protein HMPREF1013_01825 [Bacillus sp. 2_A_57_CT2] Length = 473 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 25/50 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H RH T LL+NG + LGH + +T++Y V R+ + Y Sbjct: 308 TYHNFRHQIGTDLLNNGMSAFEVMQYLGHESMHSTRLYAKVRKDRLTKEY 357 >gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 429 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H +RH FA+ L+ G DL +++ +LGHS ++ T Y ++ Sbjct: 366 HDMRHHFASRLVMAGVDLNTVRELLGHSDMTMTLRYAHL 404 >gi|224807|prf||1202257C gene tnpA Length = 361 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|332885111|gb|EGK05363.1| hypothetical protein HMPREF9456_02862 [Dysgonomonas mossii DSM 22836] Length = 445 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+F T + LS G + ++ ++GH + TTQIY + +++ E + I Sbjct: 355 TITYHQSRHNFGTLITLSQGVPMETVSQMMGHKCIKTTQIYAKLTRQKLNEDMKKLSSRI 414 Query: 61 TQKDK 65 QK K Sbjct: 415 GQKYK 419 >gi|330995738|ref|ZP_08319636.1| hypothetical protein HMPREF9442_00703 [Paraprevotella xylaniphila YIT 11841] gi|329574797|gb|EGG56358.1| hypothetical protein HMPREF9442_00703 [Paraprevotella xylaniphila YIT 11841] Length = 59 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 20/26 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILG 31 H LRHSFATHLL G D++ ++ ++G Sbjct: 21 HLLRHSFATHLLEQGTDIKIVKGLMG 46 >gi|301308315|ref|ZP_07214269.1| integrase [Bacteroides sp. 20_3] gi|300833785|gb|EFK64401.1| integrase [Bacteroides sp. 20_3] Length = 406 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSF T L+S+ + SI ++GHS + TTQ Y + ++ Sbjct: 339 HQSRHSFGTFLISSDIPIESIAKMMGHSNIRTTQGYARITDDKI 382 >gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679] gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679] Length = 361 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4] gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4] Length = 412 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|225420366|ref|ZP_03762669.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme DSM 15981] gi|225040985|gb|EEG51231.1| hypothetical protein CLOSTASPAR_06711 [Clostridium asparagiforme DSM 15981] Length = 285 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + LS D+ + ++GH + TT+IY +S I D+ Sbjct: 232 HSFRHRFAKNFLSRFNDIALLADLMGHDSIETTRIYLTRSSNEQRAIIDE 281 >gi|113971550|ref|YP_735343.1| phage integrase family protein [Shewanella sp. MR-4] gi|113886234|gb|ABI40286.1| phage integrase family protein [Shewanella sp. MR-4] Length = 310 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 M + H LR +F T LL D+ +++ + GH+ +STT IY M E Sbjct: 240 MGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMRE 290 >gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A] gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397] gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781] gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763] gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719] gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300] gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224] gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948] gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937] gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102] gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424] gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819] gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796] gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus] gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus] gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus] gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus] gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus] gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A] gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus] gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus] gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus] gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus] gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322] gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397] gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781] gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763] gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719] gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300] gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224] gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948] gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937] gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20] gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20] gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus] gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102] gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus 04-02981] gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus 04-02981] gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus] gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424] gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819] gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796] gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus] gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03] gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00] gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp. aureus T0131] gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus aureus subsp. aureus 21172] Length = 361 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|307329126|ref|ZP_07608292.1| integrase family protein [Streptomyces violaceusniger Tu 4113] gi|306885156|gb|EFN16176.1| integrase family protein [Streptomyces violaceusniger Tu 4113] Length = 101 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H+LRH FA+ +NGG + + LGH + TT ++ + E +D+ Sbjct: 30 TPHSLRHFFASTAWANGGPIHEVSRWLGHKSIKTT---VDIYGHLVPEAWDRC 79 >gi|306825473|ref|ZP_07458813.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432411|gb|EFM35387.1| phage integrase family prophage LambdaSa2 [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 281 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYT 42 AH+LRH++A+ L+S +L SI ILGH ++ T ++Y Sbjct: 217 AHSLRHTYASFLISQRVELLSISKILGHENMNITIEVYA 255 >gi|295701389|ref|YP_003610390.1| integrase [Burkholderia sp. CCGE1002] gi|295441712|gb|ADG20879.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 208 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGHS+L +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEMAEQTE 207 >gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 329 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H R +FAT G + I+++LGH +L TTQIY + Sbjct: 278 HRFRRTFATTAWKKGMSIIDIKNLLGHKKLDTTQIYLD 315 >gi|255016623|ref|ZP_05288749.1| integrase / site-specific recombinase [Bacteroides sp. 2_1_7] Length = 198 Score = 37.0 bits (84), Expect = 0.80, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++T+RHSFA L + I +LGH + TTQIY S M + +++ Sbjct: 132 VTSYTIRHSFAMALKEQNVPIEMISELLGHKSIKTTQIYLRSFSLEKMTVVNKS 185 >gi|189353108|ref|YP_001948735.1| integrase [Burkholderia multivorans ATCC 17616] gi|189337130|dbj|BAG46199.1| integrase [Burkholderia multivorans ATCC 17616] Length = 397 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 340 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 381 >gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45] gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45] Length = 327 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+FAT+ L +GGD ++Q IL H + T Y Sbjct: 268 HLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRY 303 >gi|295084599|emb|CBK66122.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 409 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T + RHSFAT L +G ++ I LGH+ LSTTQ Y + Sbjct: 352 IPLTTYVARHSFATVLKRSGVNIALISESLGHTSLSTTQYYLD 394 >gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 348 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + +RH FAT LL GGDL ++ +++GHS + T Sbjct: 289 YDVRHLFATTLLREGGDLSAVSNLMGHSSIQMT 321 >gi|145595929|ref|YP_001160226.1| hypothetical protein Strop_3417 [Salinispora tropica CNB-440] gi|145305266|gb|ABP55848.1| hypothetical protein Strop_3417 [Salinispora tropica CNB-440] Length = 87 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 24/35 (68%) Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 AT LL+ G D+R IQ +LGHS + + YT+V SK Sbjct: 33 ATLLLAQGVDIRVIQELLGHSSIKIAEGYTHVASK 67 >gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343] gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343] Length = 412 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|28379038|ref|NP_785930.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1] gi|28271876|emb|CAD64781.1| prophage Lp3 protein 1, integrase [Lactobacillus plantarum WCFS1] Length = 385 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RH++AT ++S+Q LGHS TT IYT V +K+ E Sbjct: 325 VTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQKNE 374 >gi|295092359|emb|CBK78466.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 269 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH FA L D+ + ++GH + TT+IY + EI D Sbjct: 216 HSFRHRFAKSFLERCNDIAFLADLMGHESIETTRIYLRKTATEQREIVD 264 >gi|256839902|ref|ZP_05545411.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256738832|gb|EEU52157.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 414 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-----IYDQ 55 T + LRH++AT +L + + I +GHS + TTQIY + S R ++ +YD+ Sbjct: 253 TTYVLRHTWATLMLEDCQPVELISQCMGHSSIRTTQIYLSRISSRKVDTAVNGMYDR 309 >gi|256617395|ref|ZP_05474241.1| phage integrase [Enterococcus faecalis ATCC 4200] gi|256596922|gb|EEU16098.1| phage integrase [Enterococcus faecalis ATCC 4200] Length = 328 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 269 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 310 >gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 412 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 331 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LR + AT+ L + D+ +Q LGH+ +STT++Y S+ Sbjct: 279 HALRATAATNALEHQADIAKVQEWLGHASISTTRVYDRRGSR 320 >gi|152996970|ref|YP_001341805.1| phage integrase family protein [Marinomonas sp. MWYL1] gi|150837894|gb|ABR71870.1| phage integrase family protein [Marinomonas sp. MWYL1] Length = 283 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+LRH+FA H L G L +Q++LGH ++ TT Y Sbjct: 223 HSLRHAFACHQLLAGMPLLRLQALLGHKQIQTTFRY 258 >gi|186474605|ref|YP_001863576.1| integrase family protein [Burkholderia phymatum STM815] gi|184198564|gb|ACC76526.1| integrase family protein [Burkholderia phymatum STM815] Length = 413 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+ A L++ G L+ + LGH T+IYT V+ + E+ Sbjct: 358 HALRHACAARLVAQGLSLKEVGDHLGHRSTRATRIYTKVDLAGLREV 404 >gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis] gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis] Length = 314 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306 >gi|315154996|gb|EFT99012.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0043] Length = 159 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 100 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 141 >gi|315035524|gb|EFT47456.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] Length = 389 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371 >gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H R + AT LL+ G + + +LGH +L TT IY V + + E Sbjct: 288 HRFRRTIATDLLNRGMPVEQVSKLLGHEKLDTTMIYCTVQEENVKE 333 >gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 322 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309 >gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens FD-1] Length = 327 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 34/47 (72%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH+ AT + G D+ +++ +LGH+ ++TT+IYT+++++ + Sbjct: 263 TTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEIYTHLSNENV 309 >gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM 17393] gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM 17393] Length = 412 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|189463335|ref|ZP_03012120.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136] gi|189429954|gb|EDU98938.1| hypothetical protein BACCOP_04052 [Bacteroides coprocola DSM 17136] Length = 267 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 365 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+HL NG + +IQ ++ H ++ T Y + Sbjct: 313 HTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKL 351 >gi|83583647|gb|ABC24681.1| integrase-recombinase [Mycoplasma agalactiae] Length = 249 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LR SFA+ +L G + +Q +GHS ++TT Y ++ IY Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241 >gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus] Length = 361 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 334 >gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 314 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306 >gi|325268702|ref|ZP_08135331.1| integrase [Prevotella multiformis DSM 16608] gi|324988946|gb|EGC20900.1| integrase [Prevotella multiformis DSM 16608] Length = 395 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S + H RHSF L G + SI ++GH+ +++TQIY + ++ + D+ Sbjct: 332 SLSFHVDRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDR 385 >gi|298384311|ref|ZP_06993871.1| site-specific recombinase, phage integrase family [Bacteroides sp. 1_1_14] gi|298262590|gb|EFI05454.1| site-specific recombinase, phage integrase family [Bacteroides sp. 1_1_14] Length = 285 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|291320484|ref|YP_003515748.1| integrase recombinase [Mycoplasma agalactiae] gi|291320711|ref|YP_003515976.1| integrase recombinase [Mycoplasma agalactiae] gi|240247720|emb|CAX65724.1| Integrase-recombinase [Mycoplasma agalactiae] gi|240247744|emb|CAX65747.1| Integrase-recombinase [Mycoplasma agalactiae] gi|290752819|emb|CBH40794.1| Integrase recombinase [Mycoplasma agalactiae] gi|290753047|emb|CBH41023.1| Integrase recombinase [Mycoplasma agalactiae] Length = 249 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LR SFA+ +L G + +Q +GHS ++TT Y ++ IY Sbjct: 192 SPHSLRRSFASFMLKKGALPKMVQRQMGHSSIATTFAYQQLDENENYRIY 241 >gi|239833252|ref|ZP_04681580.1| Tyrosine recombinase xerD [Ochrobactrum intermedium LMG 3301] gi|239821315|gb|EEQ92884.1| Tyrosine recombinase xerD [Ochrobactrum intermedium LMG 3301] Length = 224 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A + G+LR+IQ +LGH+++ T Y V+ + +E+ + T Sbjct: 172 HSLRRTKAAIIYKATGNLRAIQILLGHTKIENTVRYLGVDIEDALELAEHT 222 >gi|209518828|ref|ZP_03267641.1| integrase family protein [Burkholderia sp. H160] gi|209500713|gb|EEA00756.1| integrase family protein [Burkholderia sp. H160] Length = 204 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + AT + +LR++Q +LGHS++ +T Y + +EI +QT Sbjct: 152 HSMRRTKATLIYKRTKNLRAVQLLLGHSKIESTIRYLGIEVDDALEISEQTE 203 >gi|152995812|ref|YP_001340647.1| phage integrase family protein [Marinomonas sp. MWYL1] gi|150836736|gb|ABR70712.1| phage integrase family protein [Marinomonas sp. MWYL1] Length = 283 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+LRH+FA H L G L +Q++LGH ++ TT Y Sbjct: 223 HSLRHAFACHQLLAGMPLPRLQALLGHKQIQTTFRY 258 >gi|319936245|ref|ZP_08010665.1| integrase [Coprobacillus sp. 29_1] gi|319808819|gb|EFW05352.1| integrase [Coprobacillus sp. 29_1] Length = 385 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L + + +Q I+GHS +S T Sbjct: 330 TPHTLRHTFCTRLAGRNMNPKDLQYIMGHSNISIT 364 >gi|331681294|ref|ZP_08381931.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H299] gi|331081515|gb|EGI52676.1| type 1 fimbriae regulatory protein FimB [Escherichia coli H299] Length = 200 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS L + G D R I+ LGH + T YT N+ R I+D+ Sbjct: 141 HMLRHSCGFALANMGIDTRLIRDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|240173412|ref|ZP_04752070.1| Integrase [Mycobacterium kansasii ATCC 12478] Length = 399 Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 30/44 (68%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 LRH+ A+ LL+ L +I ++LGH+ +T +Y +V+ +R+++ Sbjct: 345 LRHNAASRLLAAAVPLPTIAAVLGHASEESTNLYMSVDRRRLLD 388 >gi|229548402|ref|ZP_04437127.1| phage integrase family site specific recombinase [Enterococcus faecalis ATCC 29200] gi|255971030|ref|ZP_05421616.1| predicted protein [Enterococcus faecalis T1] gi|257088973|ref|ZP_05583334.1| predicted protein [Enterococcus faecalis CH188] gi|257420756|ref|ZP_05597746.1| recombinase [Enterococcus faecalis X98] gi|307275549|ref|ZP_07556690.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|307290609|ref|ZP_07570517.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|312904825|ref|ZP_07763965.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|229306618|gb|EEN72614.1| phage integrase family site specific recombinase [Enterococcus faecalis ATCC 29200] gi|255962048|gb|EET94524.1| predicted protein [Enterococcus faecalis T1] gi|256997785|gb|EEU84305.1| predicted protein [Enterococcus faecalis CH188] gi|257162580|gb|EEU92540.1| recombinase [Enterococcus faecalis X98] gi|306498323|gb|EFM67832.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306507654|gb|EFM76783.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|310631831|gb|EFQ15114.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|315143975|gb|EFT87991.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] gi|315158786|gb|EFU02803.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] gi|315161044|gb|EFU05061.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315576493|gb|EFU88684.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 389 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371 >gi|212691154|ref|ZP_03299282.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855] gi|212666386|gb|EEB26958.1| hypothetical protein BACDOR_00644 [Bacteroides dorei DSM 17855] Length = 285 Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|29827038|ref|NP_821672.1| integrase/recombinase [Streptomyces avermitilis MA-4680] gi|29604136|dbj|BAC68207.1| putative recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 74 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+ A +L G L +I +L H L+TT +Y V+ Sbjct: 18 HRLRHALAGEMLRQGAGLAAIGQVLRHQDLATTTLYAKVD 57 >gi|29375109|ref|NP_814262.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227553843|ref|ZP_03983892.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|229547634|ref|ZP_04436359.1| phage integrase family site specific recombinase [Enterococcus faecalis TX1322] gi|255973543|ref|ZP_05424129.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256852450|ref|ZP_05557826.1| site-specific recombinase [Enterococcus faecalis T8] gi|256957621|ref|ZP_05561792.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256959670|ref|ZP_05563841.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256963244|ref|ZP_05567415.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257080140|ref|ZP_05574501.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257085830|ref|ZP_05580191.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|293384862|ref|ZP_06630705.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|293389152|ref|ZP_06633619.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|300862196|ref|ZP_07108276.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|307268561|ref|ZP_07549933.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|307272288|ref|ZP_07553548.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|307282786|ref|ZP_07562986.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|312908160|ref|ZP_07767138.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312952113|ref|ZP_07770994.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|312979096|ref|ZP_07790811.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|21693260|gb|AAM75207.1|AF454824_1 putative integrase [Enterococcus faecalis] gi|29342568|gb|AAO80333.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227177096|gb|EEI58068.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|229307126|gb|EEN73113.1| phage integrase family site specific recombinase [Enterococcus faecalis TX1322] gi|255966415|gb|EET97037.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256712304|gb|EEU27336.1| site-specific recombinase [Enterococcus faecalis T8] gi|256948117|gb|EEU64749.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256950166|gb|EEU66798.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256953740|gb|EEU70372.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256988170|gb|EEU75472.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256993860|gb|EEU81162.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|291077866|gb|EFE15230.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|291081523|gb|EFE18486.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|300848721|gb|EFK76478.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|306503642|gb|EFM72873.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|306511177|gb|EFM80187.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|306515050|gb|EFM83593.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|310625868|gb|EFQ09151.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|310629895|gb|EFQ13178.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|311288130|gb|EFQ66686.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|315026260|gb|EFT38192.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2137] gi|315028513|gb|EFT40445.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] gi|315167736|gb|EFU11753.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] gi|315574914|gb|EFU87105.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315582361|gb|EFU94552.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] gi|329575038|gb|EGG56590.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1467] Length = 389 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371 >gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099] gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099] Length = 359 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH LS T Y ++ Sbjct: 258 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHL 299 >gi|310828360|ref|YP_003960717.1| phage integrase [Eubacterium limosum KIST612] gi|308740094|gb|ADO37754.1| phage integrase [Eubacterium limosum KIST612] Length = 407 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+L++ D +++Q + GH S T IY V R E+Y + + Q Sbjct: 339 TPHELRHTYITNLIAASVDPKTVQYLAGHESSKITMDIYAKVKYNRPKELYAVVNGAFEQ 398 Query: 63 K 63 + Sbjct: 399 R 399 >gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 367 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH LS T Y ++ + + Sbjct: 257 HILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 300 >gi|221209968|ref|ZP_03582949.1| phage integrase [Burkholderia multivorans CGD1] gi|221170656|gb|EEE03122.1| phage integrase [Burkholderia multivorans CGD1] Length = 416 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 359 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 400 >gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482] gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482] gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 412 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 342 TFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|74316383|ref|YP_314123.1| hypothetical protein Tbd_0365 [Thiobacillus denitrificans ATCC 25259] gi|74055878|gb|AAZ96318.1| hypothetical protein Tbd_0365 [Thiobacillus denitrificans ATCC 25259] Length = 103 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + AT + +LR+I +LGH++L +T Y + +EI +QT Sbjct: 51 HTMRRTKATLICKRTKNLRAIPLLLGHTKLESTVRYLGIEVDDALEISEQTE 102 >gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 404 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSK--RMMEIYD 54 H RH++AT L G + + ++GHS + TQIY VNS+ + M+I++ Sbjct: 352 HISRHTWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVNSELDKAMDIFN 403 >gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2] gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2] Length = 379 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RHS A+ L G ++ +Q+ LGH + TT IYT+V Sbjct: 320 TIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHV 361 >gi|282878983|ref|ZP_06287747.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281298982|gb|EFA91387.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 404 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T + RH+FAT L +G D+ I LGH + TTQIY + Sbjct: 349 VTTYVARHTFATVLRKSGVDIGIISQSLGHQDIQTTQIYLD 389 >gi|240173391|ref|ZP_04752049.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 647 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H LRH++AT L + G ++++ ++LGH T Y + S + YD Sbjct: 480 LVVTPHQLRHTWATELANAGMSMQALMALLGHVTPQMTIRYATLASPTLRAAYD 533 >gi|239637254|ref|ZP_04678242.1| integrase [Staphylococcus warneri L37603] gi|239597210|gb|EEQ79719.1| integrase [Staphylococcus warneri L37603] Length = 407 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 S T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 345 SVTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMM 397 >gi|227519140|ref|ZP_03949189.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227073417|gb|EEI11380.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] Length = 389 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 330 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 371 >gi|325168633|ref|YP_004280423.1| Phage integrase [Agrobacterium sp. H13-3] gi|325064356|gb|ADY68045.1| Phage integrase [Agrobacterium sp. H13-3] Length = 205 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H++R + A + G+LR++Q +LGH++L +T +Y V + I Q Sbjct: 153 HSMRRTKAAQIYKKTGNLRAVQILLGHTKLESTVLYLGVEVDDALRIAGQ 202 >gi|315032239|gb|EFT44171.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] Length = 127 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ +L +G +++SIQ LGH+ STT +YT++ + Sbjct: 68 HDLRHSNASIMLDSGQNMKSIQEWLGHASYSTTANLYTHLTA 109 >gi|303246077|ref|ZP_07332358.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492473|gb|EFL52344.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 339 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 22/28 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHS 33 + +RH FA+ +L+NG DL+++ +LGHS Sbjct: 284 YDVRHLFASTMLANGADLKAVSKLLGHS 311 >gi|255015532|ref|ZP_05287658.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 371 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R ++AT + G D+R+IQS + H ++TTQ Y V Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 353 >gi|253569702|ref|ZP_04847111.1| integrase [Bacteroides sp. 1_1_6] gi|251840083|gb|EES68165.1| integrase [Bacteroides sp. 1_1_6] Length = 285 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|228918658|ref|ZP_04082085.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841003|gb|EEM86218.1| Integrase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 368 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKR 48 + H LRH++AT+ + DL + + +GH+ + TT +YTN+ +SKR Sbjct: 306 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKR 351 >gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 308 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 249 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 300 >gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M] gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M] Length = 385 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 T H LRH++A+ +G DLR +Q +GHS + T IY+++ S + Sbjct: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDEL 356 >gi|167762501|ref|ZP_02434628.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC 43183] gi|167699607|gb|EDS16186.1| hypothetical protein BACSTE_00856 [Bacteroides stercoris ATCC 43183] Length = 408 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH F L+S + SI ++GHS +STTQ Y + +++ Sbjct: 342 HQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYARITEEKI 385 >gi|154498677|ref|ZP_02037055.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC 29799] gi|150272416|gb|EDM99610.1| hypothetical protein BACCAP_02667 [Bacteroides capillosus ATCC 29799] Length = 397 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T L G + + +Q I+GHS ++ T Y Sbjct: 342 TPHTMRHTFCTRLAQAGMNPKDLQYIMGHSNITMTLNY 379 >gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 330 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 22/39 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H RHSFAT LL G IQ +LGH+ + T YT Sbjct: 271 TPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYT 309 >gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis] gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis] Length = 282 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LRH+F +L++ G L + + GH L TT+IY Sbjct: 234 SPHMLRHTFCKNLVNAGVSLEKVAVLAGHETLETTKIYC 272 >gi|257871185|ref|ZP_05650838.1| site-specific recombinase [Enterococcus gallinarum EG2] gi|257805349|gb|EEV34171.1| site-specific recombinase [Enterococcus gallinarum EG2] Length = 379 Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS--TTQIYTNVNSKRMME 51 T H LRH+F + LL+NG D ++S++GH+ S T +Y +VN + E Sbjct: 317 TPHGLRHTFVSDLLNNGVDDLIVKSLVGHAETSEITRNVYGHVNPEVQKE 366 >gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 390 Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H RH+ A+ L+S G + ++LGH + TQ Y + +R+ E +IT K Sbjct: 245 TPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQGYDDAITAK 304 >gi|168184262|ref|ZP_02618926.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf] gi|182672603|gb|EDT84564.1| XerC/D integrase-recombinase protein [Clostridium botulinum Bf] Length = 320 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +T R++FAT L NG + +Q LGH+ + T+ Y N+ Sbjct: 248 VNTFRNTFATMALKNGAGIYLVQKCLGHADIKMTERYINL 287 >gi|332878533|ref|ZP_08446254.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683628|gb|EGJ56504.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 389 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIY 41 T H RH+FAT + L+ G + ++ +LGH+ + TTQIY Sbjct: 343 TFHLARHTFATTMTLAKGVPIETVSKMLGHTNIQTTQIY 381 >gi|62768242|gb|AAY00030.1| putative integrase/recombinase [uncultured bacterial symbiont of Discodermia dissoluta] Length = 339 Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H +RH+ A+H L G D+ +I +LGH+ + T Y VN Sbjct: 263 HVMRHTMASHHLQAGVDIVTISHLLGHASVETANRYAVVN 302 >gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus licheniformis ATCC 14580] gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580] gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus licheniformis ATCC 14580] gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 379 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RHS A+ L G ++ +Q+ LGH + TT IYT+V Sbjct: 320 TIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTHV 361 >gi|325851799|ref|ZP_08171001.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484710|gb|EGC87621.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 377 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H RH+FAT LS G + S+ +LGH+ + TTQ Sbjct: 342 TFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQ 377 >gi|323486154|ref|ZP_08091484.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323400537|gb|EGA92905.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 299 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52 H LRH FA D+ + I+GHS + TT+IYT + K R ME+ Sbjct: 245 HNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKEYRRQMEL 294 >gi|309802554|ref|ZP_07696658.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] gi|308220618|gb|EFO76926.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] Length = 273 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH +AT DL + +LGH+ + TTQ Y + +R+ Sbjct: 217 TTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMPDERL 262 >gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4] gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4] Length = 285 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 23/42 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + T H LRH+F L+ G L + + GHS L+TT YT Sbjct: 227 VEVTPHRLRHTFCKWLIDAGESLDKVALLAGHSNLNTTARYT 268 >gi|326204963|ref|ZP_08194815.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325984892|gb|EGD45736.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 375 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 3/43 (6%) Query: 4 TAHTLRHSFATHLLSNGGDL--RSIQSILGHSRLSTTQIYTNV 44 + H LRHS+ +HL S D+ R IQ +GH L+TTQ+YT++ Sbjct: 311 SPHCLRHSYISHL-SEKDDVSPRFIQDQVGHVFLATTQLYTHL 352 >gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112] Length = 247 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++S E + P Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 246 >gi|167619354|ref|ZP_02387985.1| putative bacteriophage integrase [Burkholderia thailandensis Bt4] Length = 58 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 MS H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y ++ Sbjct: 1 MSLRLHDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHL 44 >gi|85859869|ref|YP_462071.1| integrase [Syntrophus aciditrophicus SB] gi|85722960|gb|ABC77903.1| integrase [Syntrophus aciditrophicus SB] Length = 334 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH A+ L ++G + IQ++LGH R +TT IY K ++ Sbjct: 265 HALRHYGASRLANSGVPITDIQALLGHQRPTTTDIYLQSIRKSLI 309 >gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 322 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309 >gi|237716535|ref|ZP_04547016.1| integrase [Bacteroides sp. D1] gi|262405314|ref|ZP_06081864.1| integrase [Bacteroides sp. 2_1_22] gi|294644635|ref|ZP_06722388.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810164|ref|ZP_06768832.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229442518|gb|EEO48309.1| integrase [Bacteroides sp. D1] gi|262356189|gb|EEZ05279.1| integrase [Bacteroides sp. 2_1_22] gi|292640072|gb|EFF58337.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442628|gb|EFG11427.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 406 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T L+S + SI ++GHS + TTQ Y + ++ + D+ Sbjct: 339 HQSRHSFGTFLISADIPIESIAKMMGHSNIRTTQGYARITDDKISKDMDK 388 >gi|210612818|ref|ZP_03289491.1| hypothetical protein CLONEX_01693 [Clostridium nexile DSM 1787] gi|210151399|gb|EEA82407.1| hypothetical protein CLONEX_01693 [Clostridium nexile DSM 1787] Length = 410 Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH FAT L+ G L I I+GH ++TT +IY + Sbjct: 339 HDLRHIFATILIEQGMQLEEISKIMGHKSIATTFEIYCGI 378 >gi|167904784|ref|ZP_02491989.1| putative bacteriophage integrase [Burkholderia pseudomallei NCTC 13177] Length = 235 Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++S E + P Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 234 >gi|320160972|ref|YP_004174196.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319994825|dbj|BAJ63596.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 337 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H+ RH F T +L + G+L+ Q + H ++ TQ Y +++++ + + Y Q Sbjct: 277 LEITPHSFRHYFVTRVLVSSGNLKLAQELARHRNIAVTQRYAHLSNEELDQGYWQA 332 >gi|313652036|ref|YP_004046714.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940787|gb|ADR19978.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 318 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH+ HL G + IQ IL HS ++TT+IY Sbjct: 266 HLFRHTLGFHLAQKGVRIEDIQEILRHSNINTTRIYV 302 >gi|298481739|ref|ZP_06999929.1| tyrosine site-specific recombinase [Bacteroides sp. D22] gi|298271961|gb|EFI13532.1| tyrosine site-specific recombinase [Bacteroides sp. D22] Length = 314 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T++TLRHS+AT G + I LGH + TTQIY Sbjct: 249 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|281178375|dbj|BAI54705.1| phage integrase [Escherichia coli SE15] Length = 314 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H +R +F T LL G D+ +++ + GHS +STT Y Sbjct: 259 TPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 296 >gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2] gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2] gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2] Length = 410 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 TFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386 >gi|224025935|ref|ZP_03644301.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM 18228] gi|224019171|gb|EEF77169.1| hypothetical protein BACCOPRO_02681 [Bacteroides coprophilus DSM 18228] Length = 393 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+ RH+ A+ L+ G + ++Q +LGH + TTQ Y+N+ S Sbjct: 335 HSARHTNASLLIYQGAQITTVQKLLGHRSIKTTQGYSNIFS 375 >gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110] gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110] Length = 368 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + T H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + + + Y + Sbjct: 303 IEVTPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTTVNTYIHLSDEDLSKTYQK 358 >gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 389 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48 H LRH+FAT L N L+++ +LGHS + T YT+V K+ Sbjct: 332 HALRHTFATKLFENEVALKTVSELLGHSSIDMTANTYTHVIPKQ 375 >gi|329964321|ref|ZP_08301402.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328525370|gb|EGF52418.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 403 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T LS G + SI ++G + + TTQ Y V ++ E D+ Sbjct: 338 HASRHSFGTLTLSAGVPIESISKMMGRTNIRTTQGYAKVTDDKISEDMDR 387 >gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269] gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269] Length = 409 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH RH+FAT + L G + ++ +LGH + TT+ Y +V K++ + +++ Sbjct: 345 SAHVGRHTFATLITLERGVPIETVSRMLGHRNIQTTERYAHVTPKKLFDEFER 397 >gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 359 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FA+ L+ G L ++ ++GHS + T+ Y + E +Q Sbjct: 305 HTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 354 >gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] Length = 331 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H +RH+ AT L G + +Q ILGH ++TT IY V+ Sbjct: 279 HLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIYAEVS 318 >gi|148983887|ref|ZP_01817206.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|147924034|gb|EDK75146.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|301799575|emb|CBW32127.1| putative phage integrase/recombinase [Streptococcus pneumoniae OXC141] Length = 265 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261 >gi|78062255|ref|YP_372163.1| Phage integrase [Burkholderia sp. 383] gi|77970140|gb|ABB11519.1| Phage integrase [Burkholderia sp. 383] Length = 420 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 363 SAHWLRHSAGSHMADGHVDLRLVRDNLGHVSLTTTSQYLHAD 404 >gi|191638064|ref|YP_001987230.1| Integrase [Lactobacillus casei BL23] gi|4586564|dbj|BAA76437.1| integrase [Lactobacillus phage phiFSW] gi|190712366|emb|CAQ66372.1| Integrase [Lactobacillus casei BL23] gi|327385292|gb|AEA56766.1| Integrase family protein [Lactobacillus casei BD-II] Length = 394 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+ A + G L I+ LGH +STTQIY ++ + E + Q + Q Sbjct: 338 HDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ 394 >gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155] gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA++ + +G + + S+LGH +++ T YT+V Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVG 357 >gi|265752104|ref|ZP_06087897.1| integrase [Bacteroides sp. 3_1_33FAA] gi|263236896|gb|EEZ22366.1| integrase [Bacteroides sp. 3_1_33FAA] Length = 267 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|253570203|ref|ZP_04847612.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840584|gb|EES68666.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 408 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH F L+S + SI ++GHS +STTQ Y + +++ Sbjct: 342 HQARHGFGVLLISESVSIESIAKMMGHSNISTTQGYARITEEKI 385 >gi|255100980|ref|ZP_05329957.1| integrase [Clostridium difficile QCD-63q42] Length = 400 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T + G + +++Q I+GH+ ++ T Y Sbjct: 345 TPHTLRHTFCTRFANAGMNPKALQYIMGHANITMTLNY 382 >gi|154501018|ref|ZP_02039056.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC 29799] gi|150270042|gb|EDM97561.1| hypothetical protein BACCAP_04705 [Bacteroides capillosus ATCC 29799] Length = 381 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 27/42 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH++ THL +N L I ++GHS +STT Y +++S+ Sbjct: 311 HCCRHTYVTHLEANQVPLAEIARLVGHSTVSTTNRYLHISSE 352 >gi|306822058|ref|ZP_07455442.1| phage integrase [Bifidobacterium dentium ATCC 27679] gi|304554658|gb|EFM42561.1| phage integrase [Bifidobacterium dentium ATCC 27679] Length = 273 Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH +AT DL + +LGH+ + TTQ Y + +R+ Sbjct: 217 TTHSLRHRYATRAYEATHDLLLVSKLLGHASVETTQRYVAMPDERL 262 >gi|288561589|ref|YP_003428995.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548221|gb|ADC52103.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 368 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH++AT+L GD+ + + LGHS T+ +Y N Sbjct: 309 SPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYIN 348 >gi|254883530|ref|ZP_05256240.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254836323|gb|EET16632.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 371 Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R ++AT + G D+R+IQS + H ++TTQ Y V Sbjct: 313 TFHSYRRTYATLQAAAGTDIRTIQSNMAHKSITTTQRYMKV 353 >gi|228924908|ref|ZP_04088061.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834752|gb|EEM80238.1| Integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 371 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKR 48 + H LRH++AT+ + DL + + +GH+ + TT +YTN+ +SKR Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNIDDSKR 355 >gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM 18228] gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM 18228] Length = 319 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 260 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYAKITAQKI 306 >gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223] gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223] Length = 451 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA++ + +G + + S+LGH +++ T YT+V Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVG 357 >gi|161522728|ref|YP_001585657.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348418|ref|YP_001941614.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160346281|gb|ABX19365.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189338556|dbj|BAG47624.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 226 Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + ++H+ R +FAT LL G + +Q +LGH + T+ Y +V+ + + I ++ Sbjct: 170 IKASSHSGRRTFATRLLGRGATIEQVQLLLGHESIDDTRRYIDVDREVLSRILEE 224 >gi|311064260|ref|YP_003970985.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866579|gb|ADP35948.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010] Length = 406 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ RH AT L + G +I+GH+ + TT +YT+ +R+ + D P + Sbjct: 348 YSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWREQRLAKTLDAALPDL 402 >gi|317131465|ref|YP_004090779.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315469444|gb|ADU26048.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 470 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYT 42 T H LRH+FAT ++ G D+R++Q+ GH++ ST IY+ Sbjct: 401 TPHGLRHTFATLQIAAGVDIRTLQARTGHAQASTLVNIYS 440 >gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42 M+ T H RH+FAT L GG+ +I+ ++GH + T+ +YT Sbjct: 287 MNHTPHDCRHTFATRLNDAGGNATAIKKMIGHESFTLTEKVYT 329 >gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] Length = 322 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309 >gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411] gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411] Length = 370 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+ L G + +I+ ++GH L+ T+ Y+++ Sbjct: 316 HTLRHTFASWLAIQGTPIYTIKELMGHKTLAMTERYSHL 354 >gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] Length = 434 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA++ + G + + +LGH+R+S+T Y +V+ ++ + Sbjct: 321 HDLRHTFASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDDAQVSQ 366 >gi|19848931|gb|AAL93615.1| integrase [Streptococcus thermophilus] gi|312278498|gb|ADQ63155.1| Integrase [Streptococcus thermophilus ND03] Length = 359 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 H+LRH++A++L+++ DL S+ +LGH L+ T ++Y Sbjct: 291 VHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329 >gi|15900420|ref|NP_345024.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TIGR4] gi|111656906|ref|ZP_01407732.1| hypothetical protein SpneT_02001846 [Streptococcus pneumoniae TIGR4] gi|148988249|ref|ZP_01819712.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|148993501|ref|ZP_01822992.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|148996902|ref|ZP_01824620.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|149005620|ref|ZP_01829359.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|149026392|ref|ZP_01836530.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP23-BS72] gi|168482749|ref|ZP_02707701.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|168485036|ref|ZP_02709974.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|168488195|ref|ZP_02712394.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|169834025|ref|YP_001694006.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae Hungary19A-6] gi|221231343|ref|YP_002510495.1| phage integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225854059|ref|YP_002735571.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225856225|ref|YP_002737736.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|298229903|ref|ZP_06963584.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298256069|ref|ZP_06979655.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502303|ref|YP_003724243.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|303260805|ref|ZP_07346758.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|303263137|ref|ZP_07349063.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|303265412|ref|ZP_07351316.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|303267711|ref|ZP_07353531.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|303270083|ref|ZP_07355795.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|307067137|ref|YP_003876103.1| integrase [Streptococcus pneumoniae AP200] gi|307126721|ref|YP_003878752.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|14971979|gb|AAK74664.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae TIGR4] gi|147757477|gb|EDK64516.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|147762560|gb|EDK69520.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|147926713|gb|EDK77786.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147927870|gb|EDK78891.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|147929275|gb|EDK80275.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP23-BS72] gi|168996527|gb|ACA37139.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] gi|172041857|gb|EDT49903.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|172043607|gb|EDT51653.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|183573161|gb|EDT93689.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|220673803|emb|CAR68305.1| putative phage integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225723018|gb|ACO18871.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225725635|gb|ACO21487.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|298237898|gb|ADI69029.1| integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|301801395|emb|CBW34081.1| putative phage integrase/recombinase [Streptococcus pneumoniae INV200] gi|302635724|gb|EFL66233.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|302638054|gb|EFL68536.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|302640385|gb|EFL70820.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|302642755|gb|EFL73082.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|302645053|gb|EFL75296.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|306408674|gb|ADM84101.1| Integrase [Streptococcus pneumoniae AP200] gi|306483783|gb|ADM90652.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|327390253|gb|EGE88594.1| phage integrase family protein [Streptococcus pneumoniae GA04375] gi|332074783|gb|EGI85256.1| phage integrase family protein [Streptococcus pneumoniae GA17570] gi|332204531|gb|EGJ18596.1| phage integrase family protein [Streptococcus pneumoniae GA47901] Length = 265 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261 >gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 410 Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 TFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386 >gi|331699805|ref|YP_004336044.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326954494|gb|AEA28191.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 599 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + TT H LRH AT L+ G D+R++ LGH+ TT + T Sbjct: 356 LRTTLHKLRHYSATELILAGVDVRTVAGRLGHAGGGTTTLRT 397 >gi|313900411|ref|ZP_07833904.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] gi|312954473|gb|EFR36148.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] Length = 282 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA S D+ + ILGHS + TT++YT Sbjct: 226 HNLRHLFAFTFYSMEKDVVRLADILGHSSIETTRVYT 262 >gi|326778612|ref|ZP_08237877.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] gi|326658945|gb|EGE43791.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] Length = 374 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS+ THL R IQ GH STT +YT V+ + Sbjct: 311 HCLRHSYITHLTEFDYPERFIQDQAGHGYASTTALYTGVSDE 352 >gi|293115748|ref|ZP_06604584.1| transposase [Butyrivibrio crossotus DSM 2876] gi|292808521|gb|EFF67726.1| transposase [Butyrivibrio crossotus DSM 2876] Length = 360 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK------RMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 281 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEKLKRMEEFRKA 340 Query: 57 HPSITQKDKK 66 + QK++K Sbjct: 341 QAEVEQKNEK 350 >gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 398 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 25/35 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH+ AT L++ G ++R++ + LGHS STT Sbjct: 332 TFHQLRHTSATLLINAGENVRTVSARLGHSNTSTT 366 >gi|253576683|ref|ZP_04854010.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843893|gb|EES71914.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 360 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRHSFAT + L N D+ + LGH+ TT++Y ++ K M E Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSE 352 >gi|256393762|ref|YP_003115326.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256359988|gb|ACU73485.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 353 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 2 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTN 43 + T H LRH+ AT LL G D+ ++ ILGH+ + TT +Y + Sbjct: 294 AVTPHGLRHTAATVLLRQAGADVGTVADILGHADVGTTSVYLD 336 >gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] Length = 322 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAMVN 309 >gi|167621620|ref|YP_001672128.1| integrase family protein [Caulobacter sp. K31] gi|167645969|ref|YP_001683632.1| integrase family protein [Caulobacter sp. K31] gi|167646192|ref|YP_001683855.1| integrase family protein [Caulobacter sp. K31] gi|167348399|gb|ABZ71134.1| integrase family protein [Caulobacter sp. K31] gi|167348622|gb|ABZ71357.1| integrase family protein [Caulobacter sp. K31] gi|167351743|gb|ABZ74469.1| integrase family protein [Caulobacter sp. K31] Length = 403 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +H LRHS AT L++ G L + +L H S+T IY ++ Sbjct: 345 SHLLRHSLATQLVNTGASLDEVGDMLRHRSRSSTMIYARLD 385 >gi|312139793|ref|YP_004007129.1| phague integrase [Rhodococcus equi 103S] gi|311889132|emb|CBH48445.1| putative phague integrase [Rhodococcus equi 103S] Length = 341 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH+FAT++ + ++ +LGH ++TTQ+YT Sbjct: 282 HQFRHTFATNMADENVSIFTLMRMLGHESMNTTQVYT 318 >gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42] gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42] Length = 387 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 S H+LRH+ A LL +G +L+ IQ LGH + T+ +Y++++ K Sbjct: 323 SLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 369 >gi|329963190|ref|ZP_08300927.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528886|gb|EGF55826.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 412 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHS+AT + L+NG + ++ +LGHS + TQ Y V Sbjct: 349 TTHRARHSYATSVCLANGVSIENVTKMLGHSNIKMTQHYARV 390 >gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7] gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64 H+ RH FA+ L++ G D+ ++ LGHS +STT IY ++ + ++ D ++ Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLEESRAKVSDAVSSALDFSG 388 Query: 65 KK 66 KK Sbjct: 389 KK 390 >gi|255316601|ref|ZP_05358184.1| integrase/recombinase, putative [Clostridium difficile QCD-76w55] Length = 269 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S H RH F +L G +I+ +LGH+ LSTT IY ++ + ++E + H Sbjct: 214 SVYPHAFRHLFTKNLDKKGVSYSAIKQLLGHA-LSTTDIYMQLSKRELLEEINSIH 268 >gi|254167363|ref|ZP_04874215.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623626|gb|EDY36189.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 310 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 6/62 (9%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 AH RH A L +G +L +I+ LGHS L TTQ Y + +M +D+ I +KD Sbjct: 236 AHAARHWRAIAWLKDGVNLETIRRFLGHSSLKTTQRY--IRRLQMEWSFDE----IREKD 289 Query: 65 KK 66 K+ Sbjct: 290 KR 291 >gi|167574529|ref|ZP_02367403.1| Phage integrase [Burkholderia oklahomensis C6786] Length = 193 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 AHT+R + A+ + LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 140 AHTMRRTKASLIYRRTKSLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 192 >gi|16519921|ref|NP_444041.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497420|sp|P55636|Y4RC_RHISN RecName: Full=Putative integrase/recombinase y4rC gi|2182600|gb|AAB92469.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 332 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 21/39 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ A LL G D I LGH + TTQIY Sbjct: 256 VTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVETTQIY 294 >gi|288557179|ref|YP_003429246.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548473|gb|ADC52354.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 368 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH++AT+L GD+ + + LGHS T+ +Y N Sbjct: 309 SPHKLRHTYATNLAEQTGDIPLVMTQLGHSSPETSLLYIN 348 >gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] Length = 402 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+++G L +Q +LGH T+ Y ++ S R+ E+ Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHLASSRLREV 388 >gi|258508081|ref|YP_003170832.1| phage-related integrase [Lactobacillus rhamnosus GG] gi|257148008|emb|CAR86981.1| Phage-related integrase [Lactobacillus rhamnosus GG] gi|259649403|dbj|BAI41565.1| phage integrase [Lactobacillus rhamnosus GG] Length = 394 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+ A + G L I+ LGH +STTQIY ++ + E + Q + Q Sbjct: 338 HDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ 394 >gi|227528951|ref|ZP_03959000.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540] gi|227351124|gb|EEJ41415.1| bacteriophage integrase [Lactobacillus vaginalis ATCC 49540] Length = 364 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS LL+NG DL +I LGHS +S T Sbjct: 306 HSLRHSHVALLLANGIDLYAISKRLGHSNISIT 338 >gi|227515184|ref|ZP_03945233.1| integrase XerD [Lactobacillus fermentum ATCC 14931] gi|227086516|gb|EEI21828.1| integrase XerD [Lactobacillus fermentum ATCC 14931] Length = 292 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424] gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 294 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRHS ATH + G +L +Q LGHS LS T Y Sbjct: 240 VSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRY 278 >gi|161520708|ref|YP_001584135.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160344758|gb|ABX17843.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 428 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 371 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 412 >gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|15902491|ref|NP_358041.1| integrase/recombinase [Streptococcus pneumoniae R6] gi|116515761|ref|YP_815960.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae D39] gi|15458015|gb|AAK99251.1| Integrase/recombinase [Streptococcus pneumoniae R6] gi|116076337|gb|ABJ54057.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae D39] Length = 265 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261 >gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp. aureus T0131] Length = 302 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Sbjct: 238 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTT 275 >gi|325676755|ref|ZP_08156428.1| phage integrase family site-specific recombinase [Rhodococcus equi ATCC 33707] gi|325552303|gb|EGD21992.1| phage integrase family site-specific recombinase [Rhodococcus equi ATCC 33707] Length = 346 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH+FAT++ + ++ +LGH ++TTQ+YT Sbjct: 287 HQFRHTFATNMADENVSIFTLMRMLGHESMNTTQVYT 323 >gi|294505887|ref|YP_003569945.1| phage integrase [Salinibacter ruber M8] gi|294342215|emb|CBH22993.1| phage integrase [Salinibacter ruber M8] Length = 209 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 16/22 (72%), Positives = 19/22 (86%) Query: 4 TAHTLRHSFATHLLSNGGDLRS 25 T HTLRHSFATHLL +G D+R+ Sbjct: 161 TCHTLRHSFATHLLQDGTDVRT 182 >gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68] gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68] Length = 382 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48 T H LRH+ A+ LL G +++ +Q LGHS + T +Y ++ KR Sbjct: 323 TIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKR 368 >gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] Length = 386 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+ AT LLS G + ++IQ LGH+ ++TT IY++V Sbjct: 325 HDLRHTNATLLLSQGVNFKTIQIRLGHADINTTLNIYSHV 364 >gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26] gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26] Length = 327 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+FAT+ L +GGD ++Q IL H + T Y Sbjct: 268 HLLRHTFATNYLKSGGDPFTLQRILRHKSPAMTSRY 303 >gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 414 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+NG + ++ +LGH L TTQ Y + +++ Sbjct: 345 TTHLARHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHYAKIVDRKI 391 >gi|254441923|ref|ZP_05055415.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] gi|198250700|gb|EDY75016.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] Length = 201 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 LRH F + + G L +Q +GH++LSTT IY + K +I Sbjct: 151 LRHGFGVNAVVKGIPLHMLQKWMGHAQLSTTTIYADAIGKEEQDI 195 >gi|153808173|ref|ZP_01960841.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185] gi|149129076|gb|EDM20292.1| hypothetical protein BACCAC_02459 [Bacteroides caccae ATCC 43185] Length = 267 Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 H LRH+ AT LL G +++ I LGHS++S T +Y++VN Sbjct: 318 HDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVN 358 >gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 400 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S H LRH++AT LL + +Q +LGH +STT IY++V Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHV 374 >gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 398 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RHS A ++S GG L +Q+ LGH ++Q Y +++ +R+ Sbjct: 333 HTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRL 376 >gi|150006639|ref|YP_001301383.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881458|ref|ZP_05254168.1| integrase [Bacteroides sp. 4_3_47FAA] gi|319642845|ref|ZP_07997482.1| integrase [Bacteroides sp. 3_1_40A] gi|149935063|gb|ABR41761.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834251|gb|EET14560.1| integrase [Bacteroides sp. 4_3_47FAA] gi|317385520|gb|EFV66462.1| integrase [Bacteroides sp. 3_1_40A] Length = 267 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|9632962|ref|NP_049990.1| integrase [Streptococcus phage Sfi21] gi|5524043|gb|AAD44095.1|AF115103_25 orf359 gp [Streptococcus phage Sfi21] gi|2292758|emb|CAA64931.1| integrase [Streptococcus phage Sfi21] gi|2897103|gb|AAC03454.1| integrase homolog [Streptococcus phage TP-J34] Length = 359 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 H+LRH++A++L+++ DL S+ +LGH L+ T ++Y Sbjct: 291 VHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329 >gi|331086908|ref|ZP_08335985.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410074|gb|EGG89509.1| hypothetical protein HMPREF0987_02288 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 463 Score = 37.0 bits (84), Expect = 1.00, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+LRHS T+ L NGGD++++Q GHS++ T +Y+++ + +R E++++ Sbjct: 356 HSLRHSSVTYKLKLNGGDIKAVQGDSGHSQVDMVTDVYSHIIDEDRRRNAELFEE 410 >gi|226198664|ref|ZP_03794229.1| phage integrase family protein [Burkholderia pseudomallei Pakistan 9] gi|225929275|gb|EEH25297.1| phage integrase family protein [Burkholderia pseudomallei Pakistan 9] Length = 250 Score = 37.0 bits (84), Expect = 1.00, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +RH+ A H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 190 SPHWMRHTHAPHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQ 241 >gi|224535543|ref|ZP_03676082.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus DSM 14838] gi|224522833|gb|EEF91938.1| hypothetical protein BACCELL_00407 [Bacteroides cellulosilyticus DSM 14838] Length = 268 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH FA + L D+ + ++GH + TT+IY +S EI ++ Sbjct: 215 HSFRHRFAKNFLDKFNDISLLADLMGHESIETTRIYLRRSSDEQQEIVNKV 265 >gi|182418902|ref|ZP_02950159.1| site-specific recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667033|ref|ZP_04527017.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377185|gb|EDT74753.1| site-specific recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655381|gb|EEP52937.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 364 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH++ T L++N D +++ GH T ++Y++VN M++I Sbjct: 310 HELRHTYITLLVANNVDFKTVAQFAGHDVEQTLKVYSHVNDD-MLKI 355 >gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 379 Score = 37.0 bits (84), Expect = 1.00, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 12/61 (19%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT LL + + + +Q +LGH+ + TT M+ Y P++ QK Sbjct: 321 TMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTT-----------MDTYSHVLPNM-QK 368 Query: 64 D 64 D Sbjct: 369 D 369 >gi|160886645|ref|ZP_02067648.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483] gi|156107056|gb|EDO08801.1| hypothetical protein BACOVA_04657 [Bacteroides ovatus ATCC 8483] Length = 406 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSF T L+S + SI ++GHS + TTQ Y + ++ + D+ Sbjct: 339 HQSRHSFGTFLISADIPIESISKMMGHSNIRTTQGYARITDDKISKDMDK 388 >gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 287 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria seeligeri FSL N1-067] Length = 381 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T+H RH+ A+ L G L+ +Q LGH+ + TT IYT+V ++ Sbjct: 322 TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEK 367 >gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 400 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S H LRH++AT LL + +Q +LGH +STT IY++V Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHV 374 >gi|210608454|ref|ZP_03287830.1| hypothetical protein CLONEX_00009 [Clostridium nexile DSM 1787] gi|210153030|gb|EEA84036.1| hypothetical protein CLONEX_00009 [Clostridium nexile DSM 1787] Length = 101 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L S + + +Q I+GHS ++ T Sbjct: 46 TPHTLRHTFCTRLASKNMNPKDLQYIMGHSNINIT 80 >gi|206889404|ref|YP_002248154.1| molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741342|gb|ACI20399.1| molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family [Thermodesulfovibrio yellowstonii DSM 11347] Length = 204 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM 50 H LRH+ A LL G + +QS+LGH+ L++T +Y +N+ +++++ Sbjct: 151 HILRHTRAMELLKAGIPITMVQSLLGHASLNSTAMYLRFSNLEARQLL 198 >gi|196044897|ref|ZP_03112131.1| phage integrase family protein [Bacillus cereus 03BB108] gi|196024385|gb|EDX63058.1| phage integrase family protein [Bacillus cereus 03BB108] Length = 372 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH+FAT G DL +++ +LGH ++TT Y +S + Sbjct: 291 SPHQLRHAFATRQTETGVDLLTLKELLGHVEVATTFNYVKPSSDHI 336 >gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 337 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 HT RH+FA+ + N G++ +Q ILGH+ + T Y+ Sbjct: 272 HTCRHTFASLYMQNDGNITDLQRILGHATIELTMRYS 308 >gi|158312284|ref|YP_001504792.1| integrase family protein [Frankia sp. EAN1pec] gi|158107689|gb|ABW09886.1| integrase family protein [Frankia sp. EAN1pec] Length = 329 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRHS A LL G D I LGH TTQIY + + M I +Q + Q Sbjct: 254 TPHTLRHSAAMTLLKAGVDTSVIALWLGHEGTETTQIYLHAD----MTIKEQALARVQQ 308 >gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby] gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99 Alcoy] gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby] gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99 Alcoy] Length = 407 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH FA+ L+ G DL +++ +LGHS ++ T Y ++ Sbjct: 351 HDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHL 389 >gi|157502123|ref|YP_001485222.1| TnpI resolvase [Bacillus thuringiensis] gi|228911345|ref|ZP_04075148.1| TnP I resolvase [Bacillus thuringiensis IBL 200] gi|228943117|ref|ZP_04105604.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228956360|ref|ZP_04118192.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228969737|ref|ZP_04130512.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|228975589|ref|ZP_04136137.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982244|ref|ZP_04142527.1| TnP I resolvase [Bacillus thuringiensis Bt407] gi|135957|sp|P10020|TNRI_BACTU RecName: Full=TnP I resolvase gi|40317|emb|CAA31832.1| TnpI resolvase [Bacillus thuringiensis] gi|40348|emb|CAA30491.1| unnamed protein product [Bacillus thuringiensis] gi|87133428|gb|ABD24338.1| TnpI resolvase [Bacillus thuringiensis] gi|117553204|gb|ABK35132.1| putative Tn4430 TnpI resolvase [Bacillus thuringiensis serovar aizawai] gi|145559600|gb|ABP73626.1| TnpI resolvase [Bacillus thuringiensis] gi|228777484|gb|EEM25768.1| TnP I resolvase [Bacillus thuringiensis Bt407] gi|228784127|gb|EEM32158.1| TnP I resolvase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228789977|gb|EEM37784.1| TnP I resolvase [Bacillus thuringiensis serovar sotto str. T04001] gi|228803317|gb|EEM50104.1| TnP I resolvase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816555|gb|EEM62693.1| TnP I resolvase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848282|gb|EEM93133.1| TnP I resolvase [Bacillus thuringiensis IBL 200] gi|326943288|gb|AEA19183.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43] gi|326943302|gb|AEA19197.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43] gi|326944009|gb|AEA19895.1| TnpI resolvase [Bacillus thuringiensis serovar chinensis CT-43] Length = 284 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEI 52 T H LRH F T+ + G + + + GHS + TT +YTN N K ME+ Sbjct: 232 TPHQLRHFFCTNAIEKGFSIHEVANQAGHSNIHTTLLYTNPNQLQLKNKMEL 283 >gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253] Length = 395 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RHS A ++S GG L +Q+ LGH ++Q Y +++ +R+ Sbjct: 333 HTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAHLHPQRL 376 >gi|300820460|ref|ZP_07100612.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7] gi|300527245|gb|EFK48314.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 119-7] Length = 206 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 28/61 (45%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+ L NG D R +Q LGH + T YT N+ R ++ ++ D Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKKSLVKTVPSDS 194 Query: 66 K 66 K Sbjct: 195 K 195 >gi|295087700|emb|CBK69223.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 239 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T++TLRHS+AT G + I LGH + TTQIY Sbjct: 174 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213 >gi|294775384|ref|ZP_06740903.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294450766|gb|EFG19247.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 267 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|239906103|ref|YP_002952842.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795967|dbj|BAH74956.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 183 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 23/48 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T YT N R +++ Sbjct: 135 HMLRHACGFALADQGADTRLIQDYLGHRNIQHTVRYTATNPARFEKLW 182 >gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195] gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195] gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195] gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195] gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|254498096|ref|ZP_05110853.1| Tn554, transposase A [Legionella drancourtii LLAP12] gi|254352662|gb|EET11440.1| Tn554, transposase A [Legionella drancourtii LLAP12] Length = 358 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 H LRH+ A+ L+ G D+ +Q LGH+ + TT YT++++K+M + + Sbjct: 299 PHMLRHTHASSLVRAGWDMALVQKRLGHTSIQTTVNTYTHIDTKQMKDAF 348 >gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 379 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+ L NG + +IQ ++GH ++ T Y + Sbjct: 323 HTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAKL 361 >gi|149920807|ref|ZP_01909270.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818325|gb|EDM77777.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 421 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FATH ++ G L + LGH+ + TT Y + + I+D+ Sbjct: 334 HTLRHTFATHAVAAGVPLSVVSRQLGHADIRTTMRYAHHAPELNPGIFDR 383 >gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 373 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RHSFA L G + +Q LGH ++TT++Y ++ Sbjct: 319 HCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKIS 358 >gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4] gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121] gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4] gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121] Length = 341 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ T L +G L +IQ+ GH+ + +T+IY ++ + ++ Y + Sbjct: 273 TCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLANDWLIGEYSK 324 >gi|332884958|gb|EGK05212.1| hypothetical protein HMPREF9456_02976 [Dysgonomonas mossii DSM 22836] Length = 410 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H++RHS AT ++ G + I S+LGH +TT Y N++ + +++ P Sbjct: 343 HSMRHSLATTMMDCGTPIPVISSVLGHKSSNTTAKYINIDIESLLKCAMPVPP 395 >gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 403 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++ T+LL G D +++Q + GH NSK M+IY Q Sbjct: 340 TPHQLRHTYITNLLYAGIDPKTVQYLAGHE-----------NSKTTMDIYAQ 380 >gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2] gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2] Length = 324 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H+LRH+ AT LL +G + +Q LGHSR++T Y +V K E D Sbjct: 263 HSLRHTHATMLLEDGVKPKIVQERLGHSRIATKMDKYVHVTRKMKTEAVD 312 >gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 411 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGHS ++ T+ Y V Sbjct: 349 STHTARHSYATSVCLANGVSIENVAKMLGHSNINMTKRYARV 390 >gi|237786204|ref|YP_002906909.1| putative phage-related integrase [Corynebacterium kroppenstedtii DSM 44385] gi|237759116|gb|ACR18366.1| putative phage-related integrase [Corynebacterium kroppenstedtii DSM 44385] Length = 385 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH +A+HL+ G ++++Q +LGH+ STT Sbjct: 310 HDLRHLYASHLIRQGLGVKAVQELLGHASASTT 342 >gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 332 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 280 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 319 >gi|322387158|ref|ZP_08060768.1| phage integrase family integrase/recombinase [Streptococcus infantis ATCC 700779] gi|321141687|gb|EFX37182.1| phage integrase family integrase/recombinase [Streptococcus infantis ATCC 700779] Length = 265 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261 >gi|299783186|gb|ADJ41184.1| Integrase XerD [Lactobacillus fermentum CECT 5716] Length = 292 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|298483404|ref|ZP_07001581.1| site-specific recombinase, phage integrase family [Bacteroides sp. D22] gi|299148890|ref|ZP_07041952.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_23] gi|298270352|gb|EFI11936.1| site-specific recombinase, phage integrase family [Bacteroides sp. D22] gi|298513651|gb|EFI37538.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_23] Length = 267 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787] gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787] Length = 420 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 T H RH++ T++ ++G +L+++Q ++GHS +S T IYT Sbjct: 339 VTPHICRHTYCTNMANSGMNLKTLQYLMGHSDVSVTLNIYT 379 >gi|149012614|ref|ZP_01833611.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|168490598|ref|ZP_02714741.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC0288-04] gi|168492610|ref|ZP_02716753.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC0288-04] gi|237650525|ref|ZP_04524777.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974] gi|237822121|ref|ZP_04597966.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974M2] gi|147763419|gb|EDK70356.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|183573243|gb|EDT93771.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC0288-04] gi|183574901|gb|EDT95429.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC0288-04] gi|332076344|gb|EGI86807.1| phage integrase family protein [Streptococcus pneumoniae GA41301] gi|332202399|gb|EGJ16468.1| phage integrase family protein [Streptococcus pneumoniae GA41317] Length = 265 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261 >gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195] gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223] gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195] gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223] gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|46202173|ref|ZP_00208415.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 371 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS+A S G L + +ILGHS +TTQ Y ++ + Sbjct: 298 HDLRHSYAAVGASGGQSLPILGAILGHSDTATTQRYAHLTA 338 >gi|315646660|ref|ZP_07899777.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453] gi|315277986|gb|EFU41307.1| site-specific tyrosine recombinase XerS [Paenibacillus vortex V453] Length = 360 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 2 STTAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S T H LRHSFAT + L N D+ + LGH+ TT++Y ++ K M Sbjct: 304 SLTVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTM 350 >gi|239904730|ref|YP_002951468.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239794593|dbj|BAH73582.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + LRH FAT LLSN DL ++ ++GH+ + T Sbjct: 319 YDLRHLFATTLLSNNADLAAVSKLMGHATVKMT 351 >gi|67077924|ref|YP_245544.1| integrase-recombinase protein [Bacillus cereus E33L] gi|66970230|gb|AAY60206.1| integrase-recombinase protein [Bacillus cereus E33L] Length = 285 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 27/38 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH LRH++ L+++G DL ++ ++GH+ ++TT+ Y Sbjct: 231 AHMLRHTYGRELVASGIDLATVADLMGHNDVNTTKRYA 268 >gi|265766721|ref|ZP_06094550.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253098|gb|EEZ24574.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 415 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H RH+ AT + LSNG + ++ S+LGH + TTQIY ++ RM+ Sbjct: 369 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIY--ASAPRMV 414 >gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175] Length = 381 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T+H RH+ A+ L G L+ +Q LGH+ + TT IYT+V ++ Sbjct: 322 TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEK 367 >gi|167588311|ref|ZP_02380699.1| Phage integrase [Burkholderia ubonensis Bu] Length = 397 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 340 SAHWLRHSAGSHMADGRLDLRIVRDNLGHVSLTTTSQYLHAD 381 >gi|254931135|ref|ZP_05264494.1| integrase [Listeria monocytogenes HPB2262] gi|293582683|gb|EFF94715.1| integrase [Listeria monocytogenes HPB2262] Length = 397 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 9/60 (15%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H+ RHS+A+ L + G + +Q++LGH + T YT+V +++ YD P I +KD Sbjct: 338 HSFRHSYASALFAEGKPAKKVQALLGHKSIKETMDTYTHV----ILDYYD---PEI-EKD 389 >gi|160872703|ref|ZP_02062835.1| site-specific recombinase, phage integrase family [Rickettsiella grylli] gi|159121502|gb|EDP46840.1| site-specific recombinase, phage integrase family [Rickettsiella grylli] Length = 336 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH++A+ + NG L +Q + G S +T Q Y ++NS+++ E Sbjct: 275 HDLRHTWASWHVQNGTSLYELQRLGGWSSYNTVQRYAHLNSQQLQE 320 >gi|325298924|ref|YP_004258841.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318477|gb|ADY36368.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 406 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFAT L +G ++ I LGH + TTQIY Sbjct: 350 EVTTYVARHSFATILKKSGVNIGIISQALGHQDIKTTQIY 389 >gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175] gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175] Length = 451 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA++ + +G + + S+LGH +++ T YT+V Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVG 357 >gi|319762347|ref|YP_004126284.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317116908|gb|ADU99396.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 337 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHS A+ +++ G DL ++ +LGH +T+ Y+++ +K + Sbjct: 274 HDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTRRYSHLATKTL 317 >gi|251779512|ref|ZP_04822432.1| phage integrase family protein, putative [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083827|gb|EES49717.1| phage integrase family protein, putative [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50 M HT RH+F T L++ G + ++ + GHS + TT + Y N + + M Sbjct: 236 MKLKPHTFRHTFCTRLVAKGIPITTVSKLAGHSSIETTAKFYINSSKEEKM 286 >gi|255283266|ref|ZP_05347821.1| transposase [Bryantella formatexigens DSM 14469] gi|255266120|gb|EET59325.1| transposase [Bryantella formatexigens DSM 14469] Length = 399 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H RH+F T++ + G D++++Q ++G+S + T +YT+ + R Sbjct: 330 TPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVTLNVYTHASYDR 375 >gi|210634723|ref|ZP_03298251.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279] gi|210158663|gb|EEA89634.1| hypothetical protein COLSTE_02176 [Collinsella stercoris DSM 13279] Length = 391 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H+LRH+ A+ L++NG D++++ +GH+ +TT +IY ++ R Sbjct: 329 TFHSLRHTHASWLIANGCDIKTLSERMGHADEATTLRIYGHLMPGR 374 >gi|23455849|ref|NP_695079.1| putative integrase [Streptococcus phage O1205] gi|2444081|gb|AAC79517.1| ORF1 [Streptococcus phage O1205] Length = 359 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 H+LRH++A++L+++ DL S+ +LGH L+ T ++Y Sbjct: 291 VHSLRHTYASYLIAHDIDLISVSQVLGHENLNITLEVYA 329 >gi|134299674|ref|YP_001113170.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134052374|gb|ABO50345.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 283 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH F ++ L G + + GH+ + TT IYTN + + M Sbjct: 231 TPHMLRHFFCSYALEKGWSVHEVAGQAGHANIHTTLIYTNPSMEEM 276 >gi|163849327|ref|YP_001637371.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222527321|ref|YP_002571792.1| integrase family protein [Chloroflexus sp. Y-400-fl] gi|163670616|gb|ABY36982.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222451200|gb|ACM55466.1| integrase family protein [Chloroflexus sp. Y-400-fl] Length = 383 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T HT RH HLL+ G L + IL H + T+ Y + ++ E++DQ Sbjct: 321 TPHTFRHFVGYHLLNEGVSLAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQ 373 >gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 390 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYT 42 T H RHSFA +LL D++++ S+LGHS L T+ YT Sbjct: 332 TWHCARHSFAVNLLGECHTDIKTVASLLGHSGLKHTEKYT 371 >gi|289642394|ref|ZP_06474541.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289507826|gb|EFD28778.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 267 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT L++ G +R I +LGHS ++ T Sbjct: 179 HDLRHAFATLLVAEGVPMRVIMELLGHSTINLT 211 >gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] Length = 301 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + HTLRH++A+ L NG D+ ++ +GHS + TQ Y Sbjct: 241 SGHTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYV 279 >gi|168485626|ref|ZP_02710134.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1087-00] gi|183571275|gb|EDT91803.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1087-00] Length = 265 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 261 >gi|331697728|ref|YP_004333967.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|331698613|ref|YP_004334852.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|331699771|ref|YP_004336010.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326952417|gb|AEA26114.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326953302|gb|AEA26999.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326954460|gb|AEA28157.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 362 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAY 335 >gi|229829883|ref|ZP_04455952.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM 14600] gi|229791181|gb|EEP27295.1| hypothetical protein GCWU000342_01989 [Shuttleworthia satelles DSM 14600] Length = 405 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNY 378 >gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17] gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17] Length = 286 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRHS A LL G D I LGH + TTQ+Y Sbjct: 210 TPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVY 247 >gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 351 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H +RH FAT L G D+ I +LGH ++ TQ Y Sbjct: 282 HDVRHCFATRLAQRGVDIYRISKLLGHLNITMTQRYA 318 >gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 355 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y Sbjct: 288 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAY 337 >gi|255690845|ref|ZP_05414520.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260623574|gb|EEX46445.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 267 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY + EI D+ Sbjct: 214 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTALEQQEIVDK 263 >gi|184155346|ref|YP_001843686.1| integrase [Lactobacillus fermentum IFO 3956] gi|183226690|dbj|BAG27206.1| integrase [Lactobacillus fermentum IFO 3956] Length = 292 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus] Length = 361 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Sbjct: 299 ITFTAHILRHTHATELIRSGWDGAYVQKRLGHAHVQTT 336 >gi|219667494|ref|YP_002457929.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219537754|gb|ACL19493.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 317 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+FA + N G L +Q ILGH+ L Y N+ Sbjct: 249 SLHLFRHTFANMWIVNNGSLFILQKILGHASLKQVNHYANL 289 >gi|317481251|ref|ZP_07940322.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902584|gb|EFV24467.1| phage integrase [Bacteroides sp. 4_1_36] Length = 355 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR + ATH L G ++ IQ +LGH ++TT Y V++ + E Sbjct: 273 CHNLRAARATHWLEEGLNIVMIQKLLGHENIATTMNYVAVSNAQKSE 319 >gi|260662141|ref|ZP_05863037.1| integrase [Lactobacillus fermentum 28-3-CHN] gi|260553524|gb|EEX26416.1| integrase [Lactobacillus fermentum 28-3-CHN] Length = 292 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T +R FA LL++G DL +Q ++GH + TTQ+Y Sbjct: 239 AVTPQRVRDGFAYRLLAHGADLSLVQQLMGHQSILTTQVY 278 >gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 344 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 TAH RH++A ++ NG D +IQ + G + + T + Y +++ + + +D+ P+ Sbjct: 281 TAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQMDTDDLRKSHDEFSPT 336 >gi|221196341|ref|ZP_03569388.1| phage integrase [Burkholderia multivorans CGD2M] gi|221203015|ref|ZP_03576034.1| phage integrase [Burkholderia multivorans CGD2] gi|221176949|gb|EEE09377.1| phage integrase [Burkholderia multivorans CGD2] gi|221182895|gb|EEE15295.1| phage integrase [Burkholderia multivorans CGD2M] Length = 421 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 364 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 405 >gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185] gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185] Length = 287 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|320195795|gb|EFW70420.1| Putative integrase/recombinase [Escherichia coli WV_060327] Length = 309 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H +R +F T LL G D+ +++ + GHS +STT Y Sbjct: 254 TPHDMRRTFITRLLEQGVDINTVRQLAGHSDISTTTRY 291 >gi|317968423|ref|ZP_07969813.1| Tyrosine recombinase xerC [Synechococcus sp. CB0205] Length = 218 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFA+ +S+G L +Q LGHS T+ Y ++ Sbjct: 148 HDLRHSFASFWISSGRSLYEVQKNLGHSSAKMTEPYAHL 186 >gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+ R +F T L N + ++Q +GH+++ TTQ+Y +K Sbjct: 247 TPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290 >gi|189467021|ref|ZP_03015806.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM 17393] gi|189435285|gb|EDV04270.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM 17393] Length = 410 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH++AT + LSN + ++ +LGH + TTQIY + ++++ ++ I Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLSKQI 399 Query: 61 TQ 62 Q Sbjct: 400 AQ 401 >gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC 43183] gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC 43183] Length = 373 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RHSFA L G + +Q LGH ++TT++Y ++ Sbjct: 319 HCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKIS 358 >gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 309 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FA+ L+ G L ++ ++GHS + T+ Y + E +Q Sbjct: 255 HTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 304 >gi|256422263|ref|YP_003122916.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256037171|gb|ACU60715.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 437 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H +RH+F T + L+N + S+ ++GHS++S+T Y V ++M+ Sbjct: 353 TFHKMRHTFGTTVTLANNMPIESLMKMMGHSKISSTLEYAQVVDSKLMK 401 >gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans] Length = 368 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H RH++AT LL G + I S+LGH+ ++TT Sbjct: 307 HWFRHTYATRLLRAGTPIEVISSLLGHASVATT 339 >gi|29293005|gb|AAO73845.1|AF335469_2 FotT [Escherichia coli] Length = 191 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 24/48 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T YT N++R I+ Sbjct: 135 HMLRHACGYALADRGVDTRLIQDYLGHRNIRHTVCYTASNAERFKYIW 182 >gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6] gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF] gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6] gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48 T H LRH+ A+ LL G +++ +Q LGHS + T +Y ++ KR Sbjct: 323 TIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKR 368 >gi|206563503|ref|YP_002234266.1| integrase [Burkholderia cenocepacia J2315] gi|198039543|emb|CAR55510.1| integrase [Burkholderia cenocepacia J2315] Length = 420 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 362 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 403 >gi|150003856|ref|YP_001298600.1| putative integrase, tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|149932280|gb|ABR38978.1| putative integrase, tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] Length = 372 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSF T++++NG ++++ S+ GHS T+ Y ++ Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352 >gi|256838891|ref|ZP_05544401.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308114|ref|ZP_07214068.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|256739810|gb|EEU53134.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833584|gb|EFK64200.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 114 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 RH+FAT L+ G DL ++ +LGH + +TQ+Y + SKR Sbjct: 61 RHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKR 102 >gi|227872201|ref|ZP_03990566.1| possible phage integrase/recombinase [Oribacterium sinus F0268] gi|227841952|gb|EEJ52217.1| possible phage integrase/recombinase [Oribacterium sinus F0268] Length = 184 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 132 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 171 >gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17] gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17] Length = 332 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRHS A LL G D I LGH + TTQ+Y Sbjct: 256 TPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVY 293 >gi|298250459|ref|ZP_06974263.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297548463|gb|EFH82330.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 382 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT + G ++Q LGH+ +T++YT V+ M+ Y + Sbjct: 322 VTPHALRHTHATRMWEGGMRELALQKRLGHASPESTRMYTQVSDPMMVVEYQRA 375 >gi|254880918|ref|ZP_05253628.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639927|ref|ZP_07994655.1| integrase [Bacteroides sp. 3_1_40A] gi|254833711|gb|EET14020.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388466|gb|EFV69317.1| integrase [Bacteroides sp. 3_1_40A] Length = 372 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSF T++++NG ++++ S+ GHS T+ Y ++ Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352 >gi|91782176|ref|YP_557382.1| putative bacteriophage integrase [Burkholderia xenovorans LB400] gi|91686130|gb|ABE29330.1| Putative bacteriophage integrase [Burkholderia xenovorans LB400] Length = 444 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 23/42 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 S T H LRHSFAT L +G + I LGHS L T Y + Sbjct: 373 SFTWHDLRHSFATRLAQHGVPIERIGKWLGHSSLQQTMRYAH 414 >gi|29349929|ref|NP_813432.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341840|gb|AAO79626.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 267 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|325001049|ref|ZP_08122161.1| integrase family protein [Pseudonocardia sp. P1] Length = 336 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 22/38 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H+LRH+F T L G LR +Q GHS TT+ Y N Sbjct: 268 HSLRHTFVTAALDAGVALRDVQDGAGHSDPRTTRKYDN 305 >gi|291535007|emb|CBL08119.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 270 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT--NVNSKR 48 H+ RH FA + G+L + +LGH+ + TT+IYT V KR Sbjct: 218 HSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKR 262 >gi|237712395|ref|ZP_04542876.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237726584|ref|ZP_04557065.1| integrase [Bacteroides sp. D4] gi|229435110|gb|EEO45187.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229453716|gb|EEO59437.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 267 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|228916332|ref|ZP_04079902.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843530|gb|EEM88608.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 230 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 S H+LRH+ A LL +G +L+ IQ LGH + T+ +Y++++ K Sbjct: 166 SLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 212 >gi|53712460|ref|YP_098452.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215325|dbj|BAD47918.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 371 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +FAT + G D+R+IQS++ H ++TT Y V Sbjct: 313 TFHSYRRTFATLQGAAGTDIRTIQSLMAHKSITTTMRYMKV 353 >gi|148244011|ref|YP_001220249.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400574|gb|ABQ29107.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 403 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +H LRHS AT L++ G L + +L H S+T IY ++ Sbjct: 345 SHLLRHSLATRLVNTGASLDEVGDVLRHRSRSSTMIYARLD 385 >gi|330909749|gb|EGH38259.1| type 1 fimbriae regulatory protein FimE [Escherichia coli AA86] Length = 202 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRH+ L G D R IQ LGH + T YT N+ R ++++ + Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNN 187 >gi|294775012|ref|ZP_06740541.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294451056|gb|EFG19527.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 372 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSF T++++NG ++++ S+ GHS T+ Y ++ Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352 >gi|240147317|ref|ZP_04745918.1| integrase/recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200491|gb|EEU98775.1| integrase/recombinase, phage integrase family [Roseburia intestinalis L1-82] Length = 147 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q ILGHS++ TT Y VN Sbjct: 95 HKFRRTMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 134 >gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+ R +F T L N + ++Q +GH+++ TTQ+Y +K Sbjct: 247 TPHSARATFITQALENNCPIEAVQKTVGHAQIKTTQMYDKRTAK 290 >gi|218265272|ref|ZP_03478751.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii DSM 18315] gi|218221530|gb|EEC94180.1| hypothetical protein PRABACTJOHN_04461 [Parabacteroides johnsonii DSM 18315] Length = 300 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + +++ Sbjct: 255 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 300 >gi|212692651|ref|ZP_03300779.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855] gi|265754552|ref|ZP_06089604.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212664729|gb|EEB25301.1| hypothetical protein BACDOR_02148 [Bacteroides dorei DSM 17855] gi|263234666|gb|EEZ20234.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 372 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSF T++++NG ++++ S+ GHS T+ Y ++ Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352 >gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200] Length = 287 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRH++ATH L G L +Q+ LGH + +T+ Y + + + Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERYLHWSPE 265 >gi|120536950|ref|YP_957008.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120326784|gb|ABM21093.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 418 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 +++ H LRH+ A+ + G D+R I LGH+ + T Q+Y N + Sbjct: 360 IASETHYLRHTGASQAIEAGADIRHISEELGHASAAFTEQVYVNAD 405 >gi|325859512|ref|ZP_08172654.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482980|gb|EGC85971.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 413 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T +H LRHS A++LL L I ILGH +T+ Y V+ R+ Sbjct: 346 TGSHILRHSLASNLLKANEQLPVISEILGHKSTESTKSYLKVDLDRL 392 >gi|296163972|ref|ZP_06846603.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900676|gb|EFG80051.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 358 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L G +L +IQ +LGH+ TT Y +V++ + + + Sbjct: 293 TPHVLRHFCASQLYLAGMNLFAIQELLGHAWTGTTARYIHVHATHVEDAW 342 >gi|291280612|ref|YP_003497446.1| site-specific recombinase, phage integrase family [Deferribacter desulfuricans SSM1] gi|290755314|dbj|BAI81690.1| site-specific recombinase, phage integrase family [Deferribacter desulfuricans SSM1] Length = 321 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSIT 61 T H LRH+FA L++ G DL I+ +L H +++T +Y +K ++ D++ SI Sbjct: 263 TGIHLLRHTFAMKLVNAGVDLLHIKELLRHKNVNSTLVY----AKSTQQMVDESFKKSIL 318 Query: 62 QKD 64 KD Sbjct: 319 NKD 321 >gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18] gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18] Length = 402 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ + G L +Q +LGH ++ TQ Y +++ Sbjct: 344 HDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLS 383 >gi|308234991|ref|ZP_07665728.1| phage family integrase/recombinase protein [Gardnerella vaginalis ATCC 14018] gi|311113898|ref|YP_003985119.1| phage integrase [Gardnerella vaginalis ATCC 14019] gi|310945392|gb|ADP38096.1| phage integrase [Gardnerella vaginalis ATCC 14019] Length = 277 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRH +AT+ + DL + +LGH+ + TTQIY ++ Sbjct: 225 HSLRHRYATNAYESTHDLLLVSKLLGHASVETTQIYISL 263 >gi|149913594|ref|ZP_01902127.1| Integrase [Roseobacter sp. AzwK-3b] gi|149812714|gb|EDM72543.1| Integrase [Roseobacter sp. AzwK-3b] Length = 70 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R ++ T L + G +R + + GHS +STTQ Y +VNS+++ Sbjct: 17 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNSEQL 63 >gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3] gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3] gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2] Length = 369 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ A L+S G L ++ +LGHS ++ T+ Y ++ R+ + Sbjct: 287 TIHDLRHTCAAWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRD 334 >gi|78212474|ref|YP_381253.1| phage integrase family protein [Synechococcus sp. CC9605] gi|78196933|gb|ABB34698.1| phage integrase family [Synechococcus sp. CC9605] Length = 168 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 23/43 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T+ H R SF T NG LR+IQSI GHS L Y V+ Sbjct: 114 TSTHGFRRSFLTSCSQNGVPLRNIQSISGHSNLQVLANYIEVS 156 >gi|291521434|emb|CBK79727.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 422 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 402 Query: 57 HPSITQKDKK 66 + QK +K Sbjct: 403 QAEVEQKKEK 412 >gi|257065330|ref|YP_003145002.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256792983|gb|ACV23653.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 443 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT LL+ G D++++Q+ +GH+ S T Sbjct: 374 HELRHTQATQLLAAGVDVKTVQNRMGHANASIT 406 >gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 375 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++AT L G ++ +Q+ LGH+ +S T +Y+++ + Sbjct: 319 HKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361 >gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] Length = 391 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRHS A+ L+++G L +Q +LGHS T Y++++ + + Sbjct: 329 TLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESL 374 >gi|170016453|ref|YP_001727372.1| phage integrase family site specific recombinase [Leuconostoc citreum KM20] gi|169803310|gb|ACA81928.1| Site-specific recombinase, phage integrase family [Leuconostoc citreum KM20] Length = 97 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++AT L G ++ +Q+ LGH+ +S T +Y+++ + Sbjct: 41 HKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 83 >gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 342 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+ RH++ + + + G D+++IQSI+GH+ T+ Y +V Sbjct: 284 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 326 >gi|254248336|ref|ZP_04941656.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124874837|gb|EAY64827.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 431 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 373 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 414 >gi|30908744|gb|AAP37604.1| IntI [uncultured bacterium] Length = 160 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/26 (57%), Positives = 20/26 (76%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYT 42 L +G D+R+IQ +LGH +STT IYT Sbjct: 134 LQDGYDIRTIQDLLGHKEISTTMIYT 159 >gi|289704735|ref|ZP_06501158.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] gi|289558545|gb|EFD51813.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] Length = 381 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ A+ +S G +++++Q +LGH+ + T +Y ++ + + + D+ + + Sbjct: 308 TPHDLRHTAASFAVSAGANVKAVQRMLGHASAAMTLDVYADLFDEDLNAVADRLDAVVAE 367 Query: 63 K 63 + Sbjct: 368 R 368 >gi|302347050|ref|YP_003815348.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150592|gb|ADK96853.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 308 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 13/60 (21%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHSFAT + + + +++ +LGH+ ++TT + +Y HP++ QK + Sbjct: 251 HGLRHSFATRCIESNCEYKTVSVLLGHANITTT-----------LNLY--VHPNMEQKKR 297 >gi|237709368|ref|ZP_04539849.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456424|gb|EEO62145.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 372 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSF T++++NG ++++ S+ GHS T+ Y ++ Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352 >gi|255280833|ref|ZP_05345388.1| putative phage integrase/recombinase [Bryantella formatexigens DSM 14469] gi|255268770|gb|EET61975.1| putative phage integrase/recombinase [Bryantella formatexigens DSM 14469] Length = 280 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMME 51 H LRH FA DL + +LGH+ ++TT+IYT +S KR +E Sbjct: 226 HNLRHLFAVTYYKMKKDLSHLADLLGHASINTTRIYTLASSEEQKRQIE 274 >gi|325261264|ref|ZP_08128002.1| integrase/recombinase [Clostridium sp. D5] gi|324032718|gb|EGB93995.1| integrase/recombinase [Clostridium sp. D5] Length = 340 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H +R + AT+L +G +L I ILGHS TT+IY V S MM Sbjct: 265 PHMVRRTRATNLYQDGTELELISRILGHSSTETTRIYA-VPSVEMM 309 >gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 332 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + HT RH+FA +++GGD+ + +GHS + TQ Y Sbjct: 255 SPHTFRHTFAKMYMAHGGDIFKLSREMGHSSVRITQRY 292 >gi|293369055|ref|ZP_06615653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292635861|gb|EFF54355.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 285 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 232 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 281 >gi|260663316|ref|ZP_05864207.1| integrase [Lactobacillus fermentum 28-3-CHN] gi|260552168|gb|EEX25220.1| integrase [Lactobacillus fermentum 28-3-CHN] Length = 373 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS +LL+NG L +I LGHS ++TT Sbjct: 303 HSLRHSHVAYLLANGVPLYAISKRLGHSNMTTT 335 >gi|237725065|ref|ZP_04555546.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436803|gb|EEO46880.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 372 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 27/41 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSF T++++NG ++++ S+ GHS T+ Y ++ Sbjct: 312 TFHCARHSFITNIMANGANIKTAASLAGHSTTRHTEKYVHI 352 >gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820] gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820] Length = 306 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFA + G D+ ++Q +L HS L T+ Y ++ + E ++ +P Sbjct: 246 SCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNP 300 >gi|220903503|ref|YP_002478815.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867802|gb|ACL48137.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 343 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 23/34 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + +RH FAT +L+ G D ++ +LGHS +STT Sbjct: 288 YDIRHLFATTMLNGGADHAAVAKLLGHSAVSTTH 321 >gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 28/42 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+LR + AT+ L + D+ +Q LGH+ +STT+IY + S+ Sbjct: 271 HSLRATAATNALDHQADISKVQEWLGHANISTTRIYDHRRSR 312 >gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris] gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris] Length = 353 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 23/41 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRHS A++L NG L I ILGH L + Y +++ Sbjct: 296 HDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAHLSE 336 >gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154] gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154] Length = 375 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++AT L G ++ +Q+ LGH+ +S T +Y+++ + Sbjct: 319 HKLRHTWATLALDQGASVKQVQTYLGHADVSMTLDVYSDITKR 361 >gi|295090531|emb|CBK76638.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 364 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY +S E+ D+ Sbjct: 311 HSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIYLTRSSVEQKELLDR 360 >gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 342 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+ RH++ + + + G D+++IQSI+GH+ T+ Y +V Sbjct: 284 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 326 >gi|184154936|ref|YP_001843276.1| integrase [Lactobacillus fermentum IFO 3956] gi|183226280|dbj|BAG26796.1| integrase [Lactobacillus fermentum IFO 3956] gi|299782969|gb|ADJ40967.1| Integrase [Lactobacillus fermentum CECT 5716] Length = 373 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS +LL+NG L +I LGHS ++TT Sbjct: 303 HSLRHSHVAYLLANGVPLYAISKRLGHSNMTTT 335 >gi|254362755|ref|ZP_04978838.1| possible integrase/recombinase [Mannheimia haemolytica PHL213] gi|261492677|ref|ZP_05989227.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495898|ref|ZP_05992322.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094383|gb|EDN75234.1| possible integrase/recombinase [Mannheimia haemolytica PHL213] gi|261308442|gb|EEY09721.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311663|gb|EEY12816.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 267 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA L D+ + ++GH + TT+IY S EI ++ Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNK 263 >gi|52785298|ref|YP_091127.1| hypothetical protein BLi01533 [Bacillus licheniformis ATCC 14580] gi|52347800|gb|AAU40434.1| hypothetical protein BLi01533 [Bacillus licheniformis ATCC 14580] Length = 67 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 23/46 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR FA LL G +L I LGHS LS T Y ++ + E Sbjct: 16 HALRRGFAKSLLEKGANLTDISRALGHSDLSVTTKYLYLDKNEVAE 61 >gi|13474966|ref|NP_106529.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|13474967|ref|NP_106605.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025715|dbj|BAB52315.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025792|dbj|BAB52391.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 332 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 23/44 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+ A LL +G D I LGH + TT IY + K Sbjct: 257 TPHVLRHTLAMDLLQHGVDRSVIALWLGHESVETTAIYLQADMK 300 >gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec] gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec] Length = 477 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+FA+ L + G R++ +LGHS + T YT+V Sbjct: 402 HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHV 441 >gi|327184452|gb|AEA32897.1| putative integrase [Lactobacillus amylovorus GRL 1118] Length = 326 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TAH+ RH+ AT L NG L+ Q +L H + TT+IY Sbjct: 265 TAHSTRHTAATLSLLNGATLQQTQELLRHRNIGTTEIY 302 >gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 404 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 12/61 (19%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT LL + + + +Q +LGH+ + TT M+ Y P++ QK Sbjct: 346 TMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTT-----------MDTYSHVLPNM-QK 393 Query: 64 D 64 D Sbjct: 394 D 394 >gi|319936580|ref|ZP_08010994.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1] gi|319808378|gb|EFW04938.1| hypothetical protein HMPREF9488_01827 [Coprobacillus sp. 29_1] Length = 283 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA DL ++ S+LGH+ + TT+IYT Sbjct: 227 HNLRHLFAITYYQLEKDLDTLASLLGHTSIDTTRIYT 263 >gi|312115554|ref|YP_004013150.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220683|gb|ADP72051.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 217 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + AT + G+LR++Q +LGH+++ +T Y V + I +Q Sbjct: 165 HSLRRTKATLIYRKTGNLRAVQLLLGHTKIESTVRYLGVEVDDALAISEQ 214 >gi|331668111|ref|ZP_08368963.1| putative site-specific recombinase [Escherichia coli TA271] gi|331064625|gb|EGI36532.1| putative site-specific recombinase [Escherichia coli TA271] Length = 246 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ+++GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215 >gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 341 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+ RH++ + + + G D+++IQSI+GH+ T+ Y +V Sbjct: 283 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 325 >gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 341 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+ RH++ + + + G D+++IQSI+GH+ T+ Y +V Sbjct: 283 TPHSCRHTYVSQMQALGVDIQTIQSIVGHADTEMTEHYLHVQE 325 >gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] Length = 288 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H+LRH++ATH L G L +Q LGH + +T+ Y Sbjct: 220 PCSPHSLRHAYATHQLQAGMPLNQLQQQLGHQSIQSTERY 259 >gi|148243781|ref|YP_001220021.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325113222|ref|YP_004277168.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325113260|ref|YP_004277206.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|326402545|ref|YP_004282626.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|146400344|gb|ABQ28879.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325049406|dbj|BAJ79744.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052689|dbj|BAJ83026.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052727|dbj|BAJ83064.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 403 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 25/41 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +H LRHS AT L+++G L + +L H ++T IY ++ Sbjct: 345 SHLLRHSLATQLVNSGASLDEVGDVLRHRSRTSTMIYARLD 385 >gi|327197974|ref|YP_004306291.1| putative site specific recombinase [Lactococcus phage 949] gi|306009294|gb|ADM73689.1| putative site specific recombinase [Lactococcus phage 949] Length = 330 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR S AT+ ++ +G D++++Q +LGH+ STT+IY Sbjct: 281 HLLRSSRATNSVVEDGKDIKAVQQLLGHNSSSTTEIY 317 >gi|256850691|ref|ZP_05556116.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US] gi|256712559|gb|EEU27555.1| Lj965 prophage integrase [Lactobacillus crispatus MV-1A-US] Length = 379 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRHSFAT NG ++ ++++LGH L T Sbjct: 322 TVHGLRHSFATIANDNGWNMVDVKNVLGHKSLDLT 356 >gi|228472546|ref|ZP_04057306.1| integrase [Capnocytophaga gingivalis ATCC 33624] gi|228275959|gb|EEK14715.1| integrase [Capnocytophaga gingivalis ATCC 33624] Length = 267 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH FA + L DL + ++GH + TT+IY + I D Sbjct: 214 HSFRHRFAKNFLERFNDLTLLADLMGHESIETTRIYLRRTASEQQAIVD 262 >gi|221198795|ref|ZP_03571840.1| site-specific recombinase, phage integrase family [Burkholderia multivorans CGD2M] gi|221181246|gb|EEE13648.1| site-specific recombinase, phage integrase family [Burkholderia multivorans CGD2M] Length = 462 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RHS A+H L+ G L +++ L H+ ++TT +Y Sbjct: 406 SPHWMRHSHASHALARGAGLTTVRDNLRHASIATTSMY 443 >gi|188583070|ref|YP_001926515.1| integrase family protein [Methylobacterium populi BJ001] gi|179346568|gb|ACB81980.1| integrase family protein [Methylobacterium populi BJ001] Length = 500 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+ + +S G LR I +ILGH +T +Y +V K Sbjct: 394 HLLRHTLGSSAVSAGLSLRLIGAILGHKNPRSTLVYAHVQDK 435 >gi|153808242|ref|ZP_01960910.1| hypothetical protein BACCAC_02530 [Bacteroides caccae ATCC 43185] gi|149129145|gb|EDM20361.1| hypothetical protein BACCAC_02530 [Bacteroides caccae ATCC 43185] Length = 239 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T++TLRHS+AT G + I LGH + TTQIY Sbjct: 174 SVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213 >gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus] Length = 361 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 300 TSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNK 352 >gi|282859069|ref|ZP_06268201.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588149|gb|EFB93322.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 389 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H RH+ AT + LSNG + ++ S+LGH + TTQIY + Sbjct: 343 TWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAS 383 >gi|282878079|ref|ZP_06286884.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299819|gb|EFA92183.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 268 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH +A + L D+ + ++GH + TT+IY +S EI D+ Sbjct: 215 HSFRHRYAKNFLEKFNDIALLADLMGHESIETTRIYLRRSSLEQQEIVDK 264 >gi|225388191|ref|ZP_03757915.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme DSM 15981] gi|225045749|gb|EEG55995.1| hypothetical protein CLOSTASPAR_01926 [Clostridium asparagiforme DSM 15981] Length = 300 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 24/43 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H LRH FA + DL + ILGH ++TT+IYT + R Sbjct: 229 HNLRHLFARTYYAMTKDLSKLADILGHKDINTTRIYTVESGSR 271 >gi|218442440|ref|YP_002380761.1| integrase [Cyanothece sp. PCC 7424] gi|218175211|gb|ACK73942.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 204 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 25/49 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ +L S G D R+IQ LGH + T YT ++ R + Sbjct: 154 PHQLRHACGYYLASQGHDTRAIQDYLGHKNIYHTVRYTQMSPSRFETFW 202 >gi|168212716|ref|ZP_02638341.1| transposase A from transposon [Clostridium perfringens CPE str. F4969] gi|170715669|gb|EDT27851.1| transposase A from transposon [Clostridium perfringens CPE str. F4969] Length = 375 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKRM 49 H LRH FAT L G +L I L H + +TQIY + N K+M Sbjct: 311 HMLRHGFATEKLEIGWNLEDISRYLRHKNIQSTQIYAHYSDNLKKM 356 >gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36] Length = 377 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH++ T L++ G DL + ++GH+ + TQ+Y + ++ E Sbjct: 323 HLSRHTYGTMLITAGVDLYTASKMMGHADVRPTQVYAKIVDRKKEE 368 >gi|325678716|ref|ZP_08158324.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109580|gb|EGC03788.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 369 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT + G D++++ +LGHS + T ++++++ KR Sbjct: 314 HVLRHTFATECIRIGIDVKTVSELLGHSSVKITLERYVHSDMDMKR 359 >gi|163747781|ref|ZP_02155122.1| phage integrase [Oceanibulbus indolifex HEL-45] gi|161378967|gb|EDQ03395.1| phage integrase [Oceanibulbus indolifex HEL-45] Length = 182 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + A + G+LR++Q +LGH+++ +T Y V + + I +Q Sbjct: 130 HSLRRTKAAEIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALSIAEQ 179 >gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 301 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYT 42 T H+ RH F LL NG D+ + + GHS T Q+YT Sbjct: 246 VTIHSFRHYFCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286 >gi|330685083|gb|EGG96750.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU121] Length = 406 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V + ++ D+ Sbjct: 346 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKDMMDK 399 >gi|313905403|ref|ZP_07838768.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469726|gb|EFR65063.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 125 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GH+ + TT +YT+VN Sbjct: 69 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHADIGTTLNVYTHVN 111 >gi|312977304|ref|ZP_07789052.1| phage integrase [Lactobacillus crispatus CTV-05] gi|310895735|gb|EFQ44801.1| phage integrase [Lactobacillus crispatus CTV-05] Length = 385 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Query: 4 TAHTLRHSFATHLLSNGGDL---RSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 TAH RHS AT LL G D + +Q +LGHSR++T IYT+V + I Sbjct: 324 TAHGFRHSLAT-LLYEGSDKITPKDVQYVLGHSRVTTALNIYTHVTQNQKSNI 375 >gi|303246043|ref|ZP_07332324.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492439|gb|EFL52310.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 380 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T + LRH FAT LL+ G DL ++ ++GHS + T Sbjct: 320 TRMYDLRHLFATTLLNKGADLAAVSKMMGHSTVKLT 355 >gi|254283689|ref|ZP_04958657.1| phage integrase family protein [gamma proteobacterium NOR51-B] gi|219679892|gb|EED36241.1| phage integrase family protein [gamma proteobacterium NOR51-B] Length = 208 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + A+ + +LR++Q +LGH++L +T Y V +E+ +QT Sbjct: 156 HSLRRTKASLIYQRTKNLRAVQLLLGHTKLESTVRYLGVEVDDALELAEQTE 207 >gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787] gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787] Length = 415 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN Sbjct: 359 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 401 >gi|167752534|ref|ZP_02424661.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216] gi|167659603|gb|EDS03733.1| hypothetical protein ALIPUT_00785 [Alistipes putredinis DSM 17216] Length = 379 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T ++S G + SI ++GH+ + TTQ Y V ++ Sbjct: 315 HQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKI 358 >gi|167628725|ref|YP_001679224.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1] gi|167630974|ref|YP_001681473.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1] gi|167591465|gb|ABZ83213.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1] gi|167593714|gb|ABZ85462.1| integrase/recombinase, putative [Heliobacterium modesticaldum Ice1] Length = 407 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHS A+ +L+NG L + LGHS +TT Y + +++ Sbjct: 355 HVFRHSLASSMLANGTPLPVVSEALGHSETNTTARYLKIAVEQL 398 >gi|153852811|ref|ZP_01994248.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814] gi|149754453|gb|EDM64384.1| hypothetical protein DORLON_00230 [Dorea longicatena DSM 13814] Length = 226 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 147 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 206 Query: 57 HPSITQKDKK 66 + QK +K Sbjct: 207 QAEVEQKKEK 216 >gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] Length = 371 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH+ AT LL + +++ IQ LGHS +STT +Y++V K E Sbjct: 314 HNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQKTEAE 360 >gi|319642756|ref|ZP_07997398.1| hypothetical protein HMPREF9011_02998 [Bacteroides sp. 3_1_40A] gi|317385623|gb|EFV66560.1| hypothetical protein HMPREF9011_02998 [Bacteroides sp. 3_1_40A] Length = 54 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 L G + +I +LG+S + TTQIY V KR+ E D+ Sbjct: 4 LEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDR 42 >gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 443 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH+ A+ L +G L+ +Q LGH+ + TT IYT+V Sbjct: 369 TTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHV 410 >gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 390 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RH+ AT+ + G DL +Q +LGH+ L +T +Y Sbjct: 333 HMFRHTAATNWVRAGVDLDVVQRLLGHAALGSTAVY 368 >gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573] gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573] Length = 402 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+++G L +Q +LGH T+ Y ++ S R+ E+ Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 388 >gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 290 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T+ H LRH+ A H L NG D+ + LGHS L+ T Y Sbjct: 237 TSTHWLRHAHACHSLENGCDIDVLMRSLGHSSLTITSKY 275 >gi|134281339|ref|ZP_01768047.1| prophage DLP12 integrase [Burkholderia pseudomallei 305] gi|134247006|gb|EBA47092.1| prophage DLP12 integrase [Burkholderia pseudomallei 305] Length = 85 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ E + P Sbjct: 32 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGREAVQKLLP 84 >gi|91791185|ref|YP_552135.1| phage integrase [Polaromonas sp. JS666] gi|91701066|gb|ABE47237.1| phage integrase [Polaromonas sp. JS666] Length = 228 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 31/50 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++H+ R +FA +L+ GD+ ++ +LGHS + +Q Y +V + +++ Sbjct: 172 SSHSGRRTFAGKVLAATGDMDTVAQLLGHSSMDCSQRYIDVKPDVLCDMF 221 >gi|60681039|ref|YP_211183.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC 9343] gi|60492473|emb|CAH07243.1| putative phage integrase/recombinase [Bacteroides fragilis NCTC 9343] Length = 268 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH FA + L D+ + ++GH + TT+IY +S I D+ Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRSSSEQQAIIDKV 265 >gi|323693005|ref|ZP_08107225.1| hypothetical protein HMPREF9475_02088 [Clostridium symbiosum WAL-14673] gi|323502886|gb|EGB18728.1| hypothetical protein HMPREF9475_02088 [Clostridium symbiosum WAL-14673] Length = 61 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMMEI 52 +H LRH FA D+ + I+GHS + TT+IYT + K R ME+ Sbjct: 6 SHNLRHLFARTFYELKKDVVKLADIMGHSSIETTRIYTATSGKEYRRQMEL 56 >gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 387 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT L G D++++ +LGH+ + T +++++N K+ Sbjct: 315 HVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVHSDLNRKQ 360 >gi|270297099|ref|ZP_06203298.1| phage integrase [Bacteroides sp. D20] gi|270273086|gb|EFA18949.1| phage integrase [Bacteroides sp. D20] Length = 368 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 314 AHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIY 350 >gi|257883999|ref|ZP_05663652.1| phage integrase [Enterococcus faecium 1,231,501] gi|257819837|gb|EEV46985.1| phage integrase [Enterococcus faecium 1,231,501] Length = 220 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRH+F T + SI L HS L TT+IY N +YD + S+ Sbjct: 155 SLTPHKLRHTFGTLASLGSASMNSISKALTHSELKTTRIYVNAPDFIDSSVYD-SFASVL 213 Query: 62 QKDK 65 ++ K Sbjct: 214 ERAK 217 >gi|300767318|ref|ZP_07077230.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495137|gb|EFK30293.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 190 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 22/43 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH++ L G D+ IQ ++GH TT++Y + K Sbjct: 134 VHGCRHTYGVRLRETGVDINDIQDLMGHVDSETTKLYAEITPK 176 >gi|323692724|ref|ZP_08106953.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323503278|gb|EGB19111.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 289 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA + DL + +LGHS +STT+IYT Sbjct: 232 HNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268 >gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218] Length = 395 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+++G L +Q +LGH T+ Y ++ S R+ E+ Sbjct: 335 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 382 >gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++ +HL G L+ IQ ++GH+ + T Y +++ Sbjct: 333 HDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLS 372 >gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18] gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18] Length = 340 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ AT L++ G DL ++ LGHS + T+ Y ++ ++ Sbjct: 282 HALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLAPDKL 325 >gi|218265583|ref|ZP_03478830.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii DSM 18315] gi|218221451|gb|EEC94101.1| hypothetical protein PRABACTJOHN_04541 [Parabacteroides johnsonii DSM 18315] Length = 200 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + +++ Sbjct: 155 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQK 200 >gi|26248740|ref|NP_754780.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073] gi|170684288|ref|YP_001744556.1| type 1 fimbriae regulatory protein [Escherichia coli SMS-3-5] gi|218700831|ref|YP_002408460.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39] gi|227887412|ref|ZP_04005217.1| integrase family protein [Escherichia coli 83972] gi|293415644|ref|ZP_06658287.1| type 1 fimbriae regulatory protein [Escherichia coli B185] gi|300983732|ref|ZP_07176713.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|301024204|ref|ZP_07187908.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] gi|301049117|ref|ZP_07196098.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|331648028|ref|ZP_08349118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605] gi|331663927|ref|ZP_08364837.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] gi|26109146|gb|AAN81348.1|AE016764_30 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073] gi|170522006|gb|ACB20184.1| type 1 fimbriae regulatory protein, FimB family [Escherichia coli SMS-3-5] gi|218370817|emb|CAR18630.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli IAI39] gi|227835762|gb|EEJ46228.1| integrase family protein [Escherichia coli 83972] gi|291433292|gb|EFF06271.1| type 1 fimbriae regulatory protein [Escherichia coli B185] gi|300299063|gb|EFJ55448.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|300396659|gb|EFJ80197.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 69-1] gi|300408461|gb|EFJ91999.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|307554411|gb|ADN47186.1| type 1 fimbriae regulatory protein [Escherichia coli ABU 83972] gi|315292310|gb|EFU51662.1| putative type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1] gi|331042888|gb|EGI15028.1| type 1 fimbriae regulatory protein FimB [Escherichia coli M605] gi|331059726|gb|EGI31703.1| type 1 fimbriae regulatory protein FimB [Escherichia coli TA143] Length = 189 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH L + G D R IQ LGH + T +YT N+ R +++ Sbjct: 132 HMLRHGCGYALANQGLDTRLIQDYLGHRNIHHTVLYTASNAARFKRVWE 180 >gi|85706622|ref|ZP_01037715.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] gi|85669034|gb|EAQ23902.1| probable site-specific integrase/recombinase [Roseovarius sp. 217] Length = 398 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 24/44 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S AH LRHS AT +L G L +I ++L H TT Y V+ Sbjct: 340 SQGAHLLRHSAATAMLRAGATLDAIGAVLRHQSPDTTAHYAKVD 383 >gi|325264103|ref|ZP_08130835.1| transposase [Clostridium sp. D5] gi|324030587|gb|EGB91870.1| transposase [Clostridium sp. D5] Length = 425 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GHS + T Y Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 384 >gi|323483758|ref|ZP_08089138.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323402949|gb|EGA95267.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 289 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA + DL + +LGHS +STT+IYT Sbjct: 232 HNLRHLFARTYYALEKDLSRLADLLGHSNVSTTRIYT 268 >gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC 29176] gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC 29176] Length = 426 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 406 Query: 57 HPSITQKDKK 66 + QK +K Sbjct: 407 QAEVEQKKEK 416 >gi|167762651|ref|ZP_02434778.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC 43183] gi|167699757|gb|EDS16336.1| hypothetical protein BACSTE_01008 [Bacteroides stercoris ATCC 43183] Length = 403 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F T ++S G + SI ++GH+ + TTQ Y V ++ Sbjct: 339 HQSRHTFGTLMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKI 382 >gi|38491991|gb|AAR22338.1| integrase/recombinase [Helicobacter pylori] Length = 355 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQEAQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2] gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2] gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 369 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT L + D+ S+ ++LGH S+TQ+ ++ + ++E Sbjct: 313 HQLRHTFATRCLESTSDIVSVSALLGH---SSTQMTLDIYADSLLE 355 >gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51] gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51] Length = 315 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGHS +STT++Y Sbjct: 263 HGLRATAATNALEHEADIAKVQTWLGHSNISTTRLY 298 >gi|300813331|ref|ZP_07093683.1| hypothetical protein HMPREF9131_0332 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512558|gb|EFK39706.1| hypothetical protein HMPREF9131_0332 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 59 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+F T L + +++QSILGHS +STT IY V Sbjct: 19 HIFRHTFTTRLNEKNINTKAMQSILGHSDISTTMDIYVEV 58 >gi|295108411|emb|CBL22364.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 426 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 406 Query: 57 HPSITQKDKK 66 + QK +K Sbjct: 407 QAEVEQKKEK 416 >gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 456 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA++ + +G + + S+LGH +++ T YT+V Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHV 356 >gi|33865880|ref|NP_897439.1| phage integrase family protein [Synechococcus sp. WH 8102] gi|33633050|emb|CAE07861.1| phage integrase family [Synechococcus sp. WH 8102] Length = 186 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HT R SF T NG LR+IQSI GHS L+ Y +V+ Sbjct: 135 HTFRRSFLTAASQNGIPLRNIQSISGHSSLTMLSNYLDVS 174 >gi|332827381|gb|EGK00138.1| hypothetical protein HMPREF9455_03545 [Dysgonomonas gadei ATCC BAA-286] Length = 412 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FA T L+ G + ++ +LGH+ + TTQIY V Sbjct: 346 HLARHTFASTTTLAKGVSIEAVSKMLGHTNIRTTQIYARV 385 >gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 347 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ A+ L G + I+ +GHS + TT YT+++ K + E Sbjct: 293 VPHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRYTHLSPKDLQE 340 >gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIYDQT 56 T H LRH+ T L G L +IQS GH + +T+IY ++ + +R ME D Sbjct: 260 TCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDWLASEYRRAMEAIDAQ 319 Query: 57 HPS 59 + S Sbjct: 320 NLS 322 >gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] Length = 340 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H R + AT + G + +QS+LGHS++ TT Y VN + E Sbjct: 288 HKFRRTVATRAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKE 333 >gi|220926705|ref|YP_002502007.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219951312|gb|ACL61704.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 327 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPS 59 H RH+ T + G+L+ Q +LGHSR+ TT Y +V + + +E + TH + Sbjct: 253 HDTRHTAGTRYVRATGNLKGAQKLLGHSRIETTTRYAHVLLDDIRAGLEAVEATHTA 309 >gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] Length = 388 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH++A+HL S+G DL ++Q +L HS TQ Y ++ + M Sbjct: 323 HGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAHLADEAM 367 >gi|270293714|ref|ZP_06199916.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275181|gb|EFA21041.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 403 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 23/37 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 T H RHS+AT LS G + +I LGH +STTQI Sbjct: 348 TYHMGRHSYATLCLSMGVPIETISQTLGHRSISTTQI 384 >gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 353 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS A++L +NG D+ +I LGH + TT Sbjct: 299 HDLRHSHASYLFNNGVDILTIAKRLGHENIETT 331 >gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] Length = 330 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT+ L+ G ++ + +LGH++L TT +Y +V+ Sbjct: 277 HRFRRTAATNALNRGMPVQEVAQLLGHAKLETTMVYCSVD 316 >gi|170738181|ref|YP_001779441.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169820369|gb|ACA94951.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 398 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 340 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 381 >gi|107026246|ref|YP_623757.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116692567|ref|YP_838100.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105895620|gb|ABF78784.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116650567|gb|ABK11207.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 398 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRHS +H+ DLR ++ LGH L+TT Y + + Sbjct: 340 SAHWLRHSAGSHMADGRVDLRLVRDNLGHVSLTTTSQYLHAD 381 >gi|62860876|gb|AAY16469.1| probable phage family integrase/recombinase protein [Bifidobacterium breve] Length = 274 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +AH+LRH +AT L + +LGH+ + TTQ Y + R+ + T Sbjct: 219 SAHSLRHRYATRTWEATHGLLPVSRLLGHASVETTQRYVAMPCARLRDAVSAT 271 >gi|283797390|ref|ZP_06346543.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075065|gb|EFE12429.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 133 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+ RH FA + L D+ + ++GH + TT+IY +S E+ D+ Sbjct: 76 TVYPHSFRHRFAKNFLKKFNDISLLADLMGHDSIETTRIYLTRSSVEQKELLDR 129 >gi|188590125|ref|YP_001921119.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] gi|188500406|gb|ACD53542.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] Length = 194 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HTLR +F GD+ ++++I GHS +S T Y +N + Sbjct: 132 CHTLRKTFGYFFYQQYGDIVTLKNIFGHSDISVTFKYIGLNQDK 175 >gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 361 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA++L+ +G D ++Q ++ HS T+ Y +++ + + Sbjct: 307 HDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSPEHI 350 >gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 399 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 385 >gi|251778556|ref|ZP_04821476.1| putative site-specific recombinase/integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082871|gb|EES48761.1| putative site-specific recombinase/integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 291 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RH+F T L++ G + ++ + GHS + TT + +NS R Sbjct: 240 HTFRHTFCTRLINRGVPISTVSKLAGHSSVDTTATFY-INSSR 281 >gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 305 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA +++ N D+ ++Q +L H LS + Y N + + E D+ +P Sbjct: 246 SCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTA-LKEQNDKFNP 299 >gi|168699589|ref|ZP_02731866.1| hypothetical protein GobsU_08707 [Gemmata obscuriglobus UQM 2246] Length = 434 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 LRHS+AT + G L + Q +LGHSR TQ+Y N + Sbjct: 386 LRHSYATRVRKEHG-LEAAQVLLGHSRADVTQVYAERNEQ 424 >gi|163855247|ref|YP_001629545.1| putative integrase [Bordetella petrii DSM 12804] gi|163258975|emb|CAP41274.1| putative integrase [Bordetella petrii] Length = 328 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRHS A+ ++ G L ++ +LGH ++T Y ++ ++ + Q P T K Sbjct: 263 TLHDLRHSTASSMVRAGVPLYTVGRVLGHKSTASTARYAHLGTEDLQAALQQISPKKTTK 322 >gi|134045675|ref|YP_001097161.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663300|gb|ABO34946.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 321 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H+LRH A +LL G L ++ LGH+ + TT IY+ Sbjct: 268 HSLRHGRAVNLLDKGVPLDVVKEYLGHTSIETTMIYS 304 >gi|49482599|ref|YP_039823.1| integrase [Staphylococcus aureus subsp. aureus MRSA252] gi|221142677|ref|ZP_03567170.1| putative integrase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|282902955|ref|ZP_06310848.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160] gi|282907352|ref|ZP_06315200.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|295426904|ref|ZP_06819543.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297588884|ref|ZP_06947525.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8] gi|49240728|emb|CAG39389.1| putative integrase [Staphylococcus aureus subsp. aureus MRSA252] gi|282330251|gb|EFB59772.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282597414|gb|EFC02373.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus C160] gi|295129356|gb|EFG58983.1| integrase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577395|gb|EFH96108.1| prophage L54a [Staphylococcus aureus subsp. aureus MN8] gi|302750241|gb|ADL64418.1| pathogenicity island protein, integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315194829|gb|EFU25218.1| putative integrase [Staphylococcus aureus subsp. aureus CGS00] Length = 404 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V K Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDK 390 >gi|304320802|ref|YP_003854445.1| phage integrase family protein [Parvularcula bermudensis HTCC2503] gi|303299704|gb|ADM09303.1| phage integrase family protein [Parvularcula bermudensis HTCC2503] Length = 208 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LR + AT L G+LR+IQ +LGH+++ +T Y V Sbjct: 156 HSLRRTKATLLYRKTGNLRAIQLLLGHAKIDSTVRYLGV 194 >gi|237721640|ref|ZP_04552121.1| integrase [Bacteroides sp. 2_2_4] gi|229449436|gb|EEO55227.1| integrase [Bacteroides sp. 2_2_4] Length = 267 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] Length = 363 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH++A+ L + G DL+ Q LGHS TT Sbjct: 325 TPHNLRHTYASLLFAAGIDLKEAQRRLGHSSSKTT 359 >gi|154250786|ref|YP_001411610.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154154736|gb|ABS61953.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 193 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 20/37 (54%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 LRH+F L +Q LGHSRLSTT IY + Sbjct: 139 ALRHAFGIEATQRNVPLSVVQKWLGHSRLSTTAIYVD 175 >gi|302341552|ref|YP_003806081.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301638165|gb|ADK83487.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 401 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS+A+ ++G L I +ILGHS STT Y+++ + + + D Sbjct: 328 HDLRHSYASVGAASGLSLTLIGAILGHSEPSTTARYSHLANNPLAQAAD 376 >gi|291550344|emb|CBL26606.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 397 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36 T HTLRH+F T L + G + +++Q I+GHS ++ Sbjct: 342 TPHTLRHTFCTTLANAGMNPKALQYIMGHSNIN 374 >gi|291550115|emb|CBL26377.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 374 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H+LRH+ A+ LL G D+ SI LGHS + T +IY ++ K+ Sbjct: 313 TVHSLRHTHASLLLEQGVDVDSISRRLGHSDSAVTREIYLHITKKK 358 >gi|227555169|ref|ZP_03985216.1| phage integrase family integrase/recombinase [Enterococcus faecalis HH22] gi|227175687|gb|EEI56659.1| phage integrase family integrase/recombinase [Enterococcus faecalis HH22] gi|315574590|gb|EFU86781.1| conserved domain protein [Enterococcus faecalis TX0309B] gi|315580842|gb|EFU93033.1| conserved domain protein [Enterococcus faecalis TX0309A] Length = 124 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 ++T++H LRH+F+T G + I L HS TT++Y N Sbjct: 58 INTSSHKLRHTFSTLAYEGGATMEQISRALTHSDTKTTEVYVN 100 >gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] Length = 343 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H R + AT + G + +QS+LGHS++ TT Y VN + E Sbjct: 291 HKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKE 336 >gi|295091004|emb|CBK77111.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 444 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 T H LRH+ AT L+ +G D+R++ LGHS STT IY++ Sbjct: 383 TLHGLRHTAATLLIVSGVDIRTVSGRLGHSCASTTLNIYSH 423 >gi|288561496|ref|YP_003428902.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4] gi|288548128|gb|ADC52010.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4] Length = 696 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH++A +L++G D ++Q +L HS T +Y + +++++ Sbjct: 497 HQFRHTYAVKMLNSGADFFTVQQLLAHSSPEMTLVYARLLDTTKRKVFEE 546 >gi|148547201|ref|YP_001267303.1| phage integrase family protein [Pseudomonas putida F1] gi|148511259|gb|ABQ78119.1| phage integrase family protein [Pseudomonas putida F1] Length = 238 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 186 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 236 >gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 398 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH++AT LL + +Q +LGH+ +STT IY++V Sbjct: 333 HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 372 >gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 406 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V + +++ + + +++ Sbjct: 344 STHTARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNSCLSE 403 >gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 316 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+LR + AT+ L + D+ +Q LGH+ ++TT+IY S+ Sbjct: 264 HSLRATAATNALEHEADIAKVQEWLGHANIATTRIYDRRKSR 305 >gi|283796749|ref|ZP_06345902.1| phage integrase [Clostridium sp. M62/1] gi|291075635|gb|EFE12999.1| phage integrase [Clostridium sp. M62/1] Length = 403 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H LRH++ T+L+ G D +++Q + GH TT IY V + E+ Sbjct: 343 TPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEEL 392 >gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis MSMB43] Length = 284 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLS 270 >gi|23097608|ref|NP_691074.1| integrase [Oceanobacillus iheyensis HTE831] gi|22775831|dbj|BAC12109.1| integrase [Oceanobacillus iheyensis HTE831] Length = 392 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L + G ++ +QS LGH+ + TT IYT+V Sbjct: 334 VHEFRHTHASLLFAAGASIKDVQSRLGHTDIQTTMDIYTHV 374 >gi|158318840|ref|YP_001511348.1| integrase family protein [Frankia sp. EAN1pec] gi|158114245|gb|ABW16442.1| integrase family protein [Frankia sp. EAN1pec] Length = 184 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAHTLRH+ A LL G D I LGH+ ++TT Y + + + + +T P Sbjct: 109 TAHTLRHTAAMRLLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALARTQP 163 >gi|329723861|gb|EGG60388.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU144] Length = 405 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMME 51 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM+ Sbjct: 346 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDQMAKNMMK 398 >gi|326776078|ref|ZP_08235343.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] gi|326656411|gb|EGE41257.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] Length = 328 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H++RH+ A+ L+ G L +Q +LGH TTQ Y ++ Sbjct: 267 HSMRHTCASWLVQKGVSLYEVQHLLGHESFQTTQRYAHL 305 >gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679] gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679] Length = 401 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH+ A+ L +G L+ +Q LGH+ + TT IYT+V Sbjct: 327 TTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHV 368 >gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 399 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 385 >gi|282899197|ref|ZP_06307172.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505] gi|281195912|gb|EFA70834.1| Phage integrase protein [Cylindrospermopsis raciborskii CS-505] Length = 158 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 +S + H LRH+ A+ L NG D+ + + LGHS ++TT Y + +Y Sbjct: 105 ISASPHWLRHTHASLALHNGADINQVSTSLGHSSVATTTKYLHARPNDCSSLY 157 >gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 299 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 23/42 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 +H RH A L G L +I+ +LGHS L +TQIY S Sbjct: 220 SHAARHWRAVKWLEEGLSLETIRRLLGHSSLKSTQIYLRARS 261 >gi|153854480|ref|ZP_01995758.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814] gi|149753006|gb|EDM62937.1| hypothetical protein DORLON_01753 [Dorea longicatena DSM 13814] Length = 405 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH FAT L+ G L I +LGHS + TT Y Sbjct: 340 TVHGLRHMFATILIELGVPLFKISGLLGHSSVHTTYEY 377 >gi|88601084|gb|ABD46540.1| integrase [Acinetobacter junii] Length = 141 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 77 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 114 >gi|332878410|ref|ZP_08446132.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683630|gb|EGJ56505.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 399 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYT 42 T + RHSFAT + LSNG + +I ++GH + TTQIY Sbjct: 353 TFYMSRHSFATLICLSNGVPIETISKMMGHYSIRTTQIYA 392 >gi|310642299|ref|YP_003947057.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309247248|gb|ADO56815.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 366 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-----IYDQTH 57 T H LRHSFAT + L N D+ + LGH+ TT++Y ++ K M + I QT Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTMSQAIERRIETQTD 363 Query: 58 PS 59 P+ Sbjct: 364 PA 365 >gi|297626300|ref|YP_003688063.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922065|emb|CBL56629.1| Phage integrase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 396 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRH+ AT L G L +Q ILGH + TT+ Y + + + + E Q + Sbjct: 323 TRHGLRHTGATWLADAGIPLHVLQEILGHQSIETTKGYLHPDHRHLAEAAKQAN 376 >gi|288929355|ref|ZP_06423200.1| site-specific recombinase, phage integrase family [Prevotella sp. oral taxon 317 str. F0108] gi|288329457|gb|EFC68043.1| site-specific recombinase, phage integrase family [Prevotella sp. oral taxon 317 str. F0108] Length = 308 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRHSFAT + + D +++ +LGH+ ++TT ++ N++ K+ Sbjct: 251 HGLRHSFATRCIESNCDYKTVSVLLGHANITTTLNLYVHPNMDQKK 296 >gi|282907695|ref|ZP_06315537.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|283959808|ref|ZP_06377249.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|282328600|gb|EFB58871.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789400|gb|EFC28227.1| prophage L54a, integrase [Staphylococcus aureus subsp. aureus A017934/97] Length = 404 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V K Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQERVGHSDYKTTLEIYTHVTDK 390 >gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B] gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B] Length = 369 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + G ++Q LGH+ +T+IYT V+ ++ Y + Sbjct: 312 TPHALRHTHATRMWEAGMRELTLQRRLGHASPESTRIYTRVSDATVLAEYSR 363 >gi|281421789|ref|ZP_06252788.1| site-specific recombinase, phage integrase family [Prevotella copri DSM 18205] gi|281404147|gb|EFB34827.1| site-specific recombinase, phage integrase family [Prevotella copri DSM 18205] Length = 267 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY + +I D+ Sbjct: 214 HSFRHRFAKNFLDRFNDIALLADLMGHESIETTRIYLRRTASEQQKIVDK 263 >gi|150005370|ref|YP_001300114.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC 8482] gi|149933794|gb|ABR40492.1| putative phage integrase/recombinase [Bacteroides vulgatus ATCC 8482] Length = 368 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 314 AHAFRHFFAKMFLKKNKDVIQLADLLGHGSVDTTRIY 350 >gi|332204893|gb|EGJ18958.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA47901] Length = 321 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308 >gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 391 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 24/34 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT L +G +++++ ILGHS ++ T Sbjct: 335 VHGLRHTFATRALESGMNVKTLSKILGHSSVAFT 368 >gi|228969855|ref|ZP_04130590.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789860|gb|EEM37707.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 375 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH++AT+ + DL + + +GH+ + TT +YTN++ Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 351 >gi|228942857|ref|ZP_04105374.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976751|ref|ZP_04137168.1| Integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228782964|gb|EEM31126.1| Integrase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816813|gb|EEM62921.1| Integrase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 375 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH++AT+ + DL + + +GH+ + TT +YTN++ Sbjct: 310 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 351 >gi|240143906|ref|ZP_04742507.1| integrase [Roseburia intestinalis L1-82] gi|257204099|gb|EEV02384.1| integrase [Roseburia intestinalis L1-82] Length = 270 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT--NVNSKR 48 H+ RH FA + G+L + +LGH+ + TT+IYT V KR Sbjct: 218 HSFRHFFAISYMERYGNLAELADLLGHTSIETTRIYTTSTVEEKR 262 >gi|226325881|ref|ZP_03801399.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758] gi|225206005|gb|EEG88359.1| hypothetical protein COPCOM_03694 [Coprococcus comes ATCC 27758] Length = 576 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH RH+ AT + NG ++ ++ LGHS + T+ Y + +R++ D+ Sbjct: 508 AHDYRHNLATSMYGNGVSIQGVRDYLGHSSENMTKQYIDFMPERIVSAEDK 558 >gi|221205056|ref|ZP_03578072.1| site-specific recombinase, phage integrase family [Burkholderia multivorans CGD2] gi|221174847|gb|EEE07278.1| site-specific recombinase, phage integrase family [Burkholderia multivorans CGD2] Length = 439 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RHS A+H L+ G L +++ L H+ ++TT +Y Sbjct: 383 SPHWMRHSHASHALARGAGLTTVRDNLRHASIATTSMY 420 >gi|209916846|ref|YP_002291166.1| phage integrase [Escherichia coli SE11] gi|209915272|dbj|BAG80344.1| phage integrase [Escherichia coli SE11] Length = 332 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT RH T L G D+ I + GH R+ +T +Y +++++ + ++ T S+ Sbjct: 261 STHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNYTVASL 317 >gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 392 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A++ +S+G ++ + +LGHS++ TT Y ++ Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHSQIQTTMRYAHL 361 >gi|149915553|ref|ZP_01904079.1| Integrase [Roseobacter sp. AzwK-3b] gi|149810445|gb|EDM70288.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 31/47 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R ++ T L + G +R + + GHS +STTQ Y +VN++++ Sbjct: 135 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNAEQL 181 >gi|163943259|ref|YP_001642489.1| site-specific tyrosine recombinase XerS [Bacillus weihenstephanensis KBAB4] gi|163865456|gb|ABY46514.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 368 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH++AT+ + DL + + +GH+ + TT +YTN++ Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 344 >gi|134288055|ref|YP_001110219.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132705|gb|ABO60331.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 411 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H RH+FA+ L G + +IQ+ LGH+ + TT IY + Sbjct: 355 AASPHWFRHTFASMLDGLGVSITTIQAQLGHASIETTSIYID 396 >gi|32470078|ref|NP_863020.1| hypothetical protein p165897_108 [Escherichia coli] gi|157418271|ref|YP_001481343.1| hypothetical protein APECO1_O1CoBM187 [Escherichia coli APEC O1] gi|169546427|ref|YP_001711867.1| hypothetical protein pVM01_p018 [Escherichia coli] gi|170650826|ref|YP_001739982.1| site-specific recombinase [Escherichia coli SMS-3-5] gi|222104906|ref|YP_002539395.1| site specific recombinase, putative [Escherichia coli] gi|300825428|ref|ZP_07105500.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300904900|ref|ZP_07122722.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301305709|ref|ZP_07211797.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|331652482|ref|ZP_08353493.1| putative site-specific recombinase [Escherichia coli M718] gi|28629335|gb|AAO49615.1| Int [Escherichia coli] gi|88770321|gb|ABD51758.1| Int [Escherichia coli APEC O1] gi|168830979|gb|ACA34760.1| Int [Escherichia coli] gi|170522102|gb|ACB20279.1| site-specific recombinase [Escherichia coli SMS-3-5] gi|221589331|gb|ACM18328.1| site specific recombinase, putative [Escherichia coli] gi|300403180|gb|EFJ86718.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300522110|gb|EFK43179.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300839049|gb|EFK66809.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|312949170|gb|ADR29996.1| putative site-specific recombinase [Escherichia coli O83:H1 str. NRG 857C] gi|315252701|gb|EFU32669.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] gi|315297079|gb|EFU56359.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] gi|325495777|gb|EGC93638.1| hypothetical protein ECD227_4266 [Escherichia fergusonii ECD227] gi|331049588|gb|EGI21654.1| putative site-specific recombinase [Escherichia coli M718] Length = 246 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ+++GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRV 215 >gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 322 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309 >gi|312878076|ref|ZP_07738012.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795155|gb|EFR11548.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 278 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH++AT LL + +Q +LGH+ +STT IY++V Sbjct: 213 HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 252 >gi|296169804|ref|ZP_06851418.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895481|gb|EFG75181.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 422 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 26/37 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T H LRH+ A+ +S G +++++Q +LGH++ S T Sbjct: 350 TITPHDLRHTAASLAVSAGANVKAVQRMLGHAKASMT 386 >gi|288958732|ref|YP_003449073.1| integrase [Azospirillum sp. B510] gi|288911040|dbj|BAI72529.1| integrase [Azospirillum sp. B510] Length = 301 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+ G DL +++ +LGHS + T Y ++ Sbjct: 246 HDLRHTFASKLVMAGVDLNTVRELLGHSDIKMTLRYAHL 284 >gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] Length = 343 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H R + AT + G + +QS+LGHS++ TT Y VN + E Sbjct: 291 HKFRRTVATKAIDKGMPIEQVQSLLGHSQIDTTMHYAMVNQNNVKE 336 >gi|170690876|ref|ZP_02882042.1| integrase family protein [Burkholderia graminis C4D1M] gi|170144125|gb|EDT12287.1| integrase family protein [Burkholderia graminis C4D1M] Length = 208 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 207 >gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002] Length = 289 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + + H LRHS ATH L NG DL + LGH ++ T Y Sbjct: 234 VQVSPHFLRHSHATHSLKNGCDLHLLSESLGHGNIAITSRY 274 >gi|170762035|ref|YP_001752228.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|168827612|gb|ACA32874.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 255 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%) Query: 2 STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + HTLR SF T+ L++ GD L+ +Q ++GH + TT Y + +++ ++Y + Sbjct: 187 NVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 246 >gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] Length = 393 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57 T H LRH+FA+ L G D+ + + LGHS + TT IYT+++ ++Y + H Sbjct: 317 TPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTHLD-----KLYKEKH 366 >gi|116629555|ref|YP_814727.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238854086|ref|ZP_04644435.1| integrase [Lactobacillus gasseri 202-4] gi|116095137|gb|ABJ60289.1| Integrase [Lactobacillus gasseri ATCC 33323] gi|238833293|gb|EEQ25581.1| integrase [Lactobacillus gasseri 202-4] Length = 322 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309 >gi|312114527|ref|YP_004012123.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219656|gb|ADP71024.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 211 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + AT + G+LR++Q +LGH+++ +T Y V + I +Q Sbjct: 159 HSLRRTKATLIYRKTGNLRAVQLLLGHTKIESTVRYLGVEVDDALAISEQ 208 >gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 368 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + HT RH+ A + NGG++ + +L H+ +STT+ Y Sbjct: 311 SPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEY 348 >gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410] Length = 344 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH+ A+ L +G L+ +Q LGH+ + TT IYT+V Sbjct: 270 TTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHV 311 >gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 347 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + +RH FAT LL+ GGDL ++ ++GHS + T Sbjct: 292 YDVRHLFATTLLNEGGDLSAVSKLMGHSSIQMT 324 >gi|187933324|ref|YP_001886146.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187721477|gb|ACD22698.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 358 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 3 TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRH++AT L+ SN D ++I ILGH+ T + Y++V Sbjct: 300 VTIHELRHTYATILIASNTMDFKTIAQILGHNVEQTLRTYSHV 342 >gi|185178975|ref|ZP_02964732.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188524422|ref|ZP_03004442.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|184209257|gb|EDU06300.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|195659973|gb|EDX53353.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] Length = 255 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%) Query: 2 STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + HTLR SF T+ L++ GD L+ +Q ++GH + TT Y + +++ ++Y + Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 246 >gi|163794650|ref|ZP_02188620.1| Integrase [alpha proteobacterium BAL199] gi|159179923|gb|EDP64448.1| Integrase [alpha proteobacterium BAL199] Length = 110 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+H+ R +F T L + G +R + ++ GH + TQ Y +VN + M Sbjct: 56 GATSHSGRRTFITELAAKGVGVRVLAALAGHRSIQVTQKYIDVNDEMM 103 >gi|75675757|ref|YP_318178.1| phage integrase [Nitrobacter winogradskyi Nb-255] gi|74420627|gb|ABA04826.1| phage integrase [Nitrobacter winogradskyi Nb-255] Length = 416 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSITQ 62 H +RH+ AT L G+LR +Q +LGH+ + T + Y +V + + E ++T + Q Sbjct: 313 HDMRHTAATRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREGMERTSAAERQ 370 >gi|326943717|gb|AEA19610.1| Integrase [Bacillus thuringiensis serovar chinensis CT-43] Length = 368 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH++AT+ + DL + + +GH+ + TT +YTN++ Sbjct: 305 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 346 >gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16] gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16] Length = 399 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVN 385 >gi|325674670|ref|ZP_08154357.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707] gi|325554256|gb|EGD23931.1| prophage DLP12 integrase [Rhodococcus equi ATCC 33707] Length = 348 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A+ L+ +G + ++++LGH + TT+ Y ++ Sbjct: 285 HDLRHTYASWLVQDGVSIYELKNLLGHESVKTTERYAHL 323 >gi|238755959|ref|ZP_04617285.1| site-specific recombinase in afa region [Yersinia ruckeri ATCC 29473] gi|238705811|gb|EEP98202.1| site-specific recombinase in afa region [Yersinia ruckeri ATCC 29473] Length = 95 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 27/46 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HT RHSF H+L + + +Q+++GH + ++Y+ V + Sbjct: 21 VPVTPHTFRHSFIMHMLYHRQPQKVVQALVGHKDTRSMEVYSRVFA 66 >gi|159904504|ref|YP_001548166.1| integrase family protein [Methanococcus maripaludis C6] gi|159885997|gb|ABX00934.1| integrase family protein [Methanococcus maripaludis C6] Length = 324 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H+LRH AT LL G + ++ ILGH L TT Y++ ++ Sbjct: 271 HSLRHGRATDLLDKGVPIDIVKEILGHKSLETTLYYSHSKERK 313 >gi|62860892|gb|AAY16485.1| site-specific recombinase [Bifidobacterium breve] Length = 229 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH+LRH +AT + D + +LGH+ + TTQ Y + R+ + T Sbjct: 173 TAHSLRHRYATTTYAATRDPLLVSKLLGHASVETTQRYIAMPDDRLRAAVEAT 225 >gi|284023378|ref|ZP_06377776.1| putative integrase [Staphylococcus aureus subsp. aureus 132] Length = 404 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V K Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDK 390 >gi|298346269|ref|YP_003718956.1| phage integrase family protein [Mobiluncus curtisii ATCC 43063] gi|298236330|gb|ADI67462.1| phage integrase family protein [Mobiluncus curtisii ATCC 43063] Length = 381 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT +S G +++S+Q +LGHS S T Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349 >gi|24379471|ref|NP_721426.1| putative transposon integrase; Tn916 ORF3-like [Streptococcus mutans UA159] gi|24377408|gb|AAN58732.1|AE014942_8 putative transposon integrase; Tn916 ORF3-like [Streptococcus mutans UA159] Length = 388 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 340 TPHTLRHTFCTNCANAGMNPKALQYIMGHANITMTLNY 377 >gi|10955352|ref|NP_053064.1| resolvase [Escherichia coli] gi|847970|gb|AAC44039.1| Rsv [Escherichia coli] gi|6009378|dbj|BAA84837.1| Resolvase [Escherichia coli] Length = 178 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HT RHS+ H+L + + IQ++ GH + ++YT V + M Sbjct: 104 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDM 152 >gi|323693378|ref|ZP_08107593.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323502583|gb|EGB18430.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 283 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H LRH FA+ D+ + ILGHS ++TT+IYT + + Sbjct: 228 HNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATAAQ 270 >gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 311 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RHS T L S G L SIQ++ GH+ + TT Y Sbjct: 257 SPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHY 294 >gi|295697302|ref|YP_003590540.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412904|gb|ADG07396.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 413 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+ A+ LL L I ILGH +TQ+Y VN Sbjct: 354 HALRHTLASTLLERETPLPVIAEILGHLSTQSTQVYLAVN 393 >gi|291483370|dbj|BAI84445.1| hypothetical protein BSNT_01551 [Bacillus subtilis subsp. natto BEST195] Length = 234 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H RHS + L+++G D+ I LGHSR STT IY ++ R E+ D+ Sbjct: 179 HAFRHSHVSLLINSGEDIHIISQRLGHSRTSTTYDIYGHLFPNRQKELADR 229 >gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] Length = 287 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +S + H LRH+ A+ L NG D+ + + LGHS ++TT Y Sbjct: 234 ISASPHWLRHTHASLALHNGADINQVSTSLGHSSVATTTKY 274 >gi|52141019|ref|YP_085810.1| integrase/recombinase [Bacillus cereus E33L] gi|51974488|gb|AAU16038.1| integrase/recombinase [Bacillus cereus E33L] Length = 322 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR FA +LL G ++ I LGHS L+ T Y +++ + + E Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316 >gi|323484024|ref|ZP_08089395.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323402641|gb|EGA94968.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 283 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H LRH FA+ D+ + ILGHS ++TT+IYT + + Sbjct: 228 HNLRHLFASVYYERFQDIVKLADILGHSNVNTTRIYTTATAAQ 270 >gi|300919026|ref|ZP_07135573.1| site-specific recombinase, phage integrase family [Escherichia coli MS 115-1] gi|300413853|gb|EFJ97163.1| site-specific recombinase, phage integrase family [Escherichia coli MS 115-1] Length = 246 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215 >gi|229071996|ref|ZP_04205206.1| Integrase/recombinase [Bacillus cereus F65185] gi|228711155|gb|EEL63120.1| Integrase/recombinase [Bacillus cereus F65185] Length = 322 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR FA +LL G ++ I LGHS L+ T Y +++ + + E Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316 >gi|206575607|ref|YP_002235679.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206570451|gb|ACI12097.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 246 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215 >gi|167566345|ref|ZP_02359261.1| integrase family protein [Burkholderia oklahomensis EO147] Length = 357 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS A+ +++ G DL ++ +LGH ++T+ Y ++ + ++ + Sbjct: 292 HDLRHSAASEMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDKLAD 337 >gi|186471688|ref|YP_001863006.1| integrase family protein [Burkholderia phymatum STM815] gi|184197997|gb|ACC75960.1| integrase family protein [Burkholderia phymatum STM815] Length = 405 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +++++ LRH+FA LL G ++I ILGH L +T +Y ++ Sbjct: 341 NSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384 >gi|186474625|ref|YP_001863596.1| integrase family protein [Burkholderia phymatum STM815] gi|184198584|gb|ACC76546.1| integrase family protein [Burkholderia phymatum STM815] Length = 405 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 28/44 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +++++ LRH+FA LL G ++I ILGH L +T +Y ++ Sbjct: 341 NSSSYALRHAFAMRLLDRGVGTKAIGDILGHRSLESTCVYLRLD 384 >gi|13357702|ref|NP_077976.1| integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|11356971|pir||B82927 integrase-recombinase protein UU145 [imported] - Ureaplasma urealyticum gi|6899105|gb|AAF30551.1|AE002115_3 integrase-recombinase protein [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 260 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 6/60 (10%) Query: 2 STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + HTLR SF T+ L++ GD L+ +Q ++GH + TT Y + +++ ++Y + Sbjct: 192 NVSLHTLRRSFITNFLTSNENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 251 >gi|223933220|ref|ZP_03625211.1| integrase family protein [Streptococcus suis 89/1591] gi|223898150|gb|EEF64520.1| integrase family protein [Streptococcus suis 89/1591] Length = 385 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H +RH F T L G + LGH+ L TT+ YT++ +R + D Sbjct: 328 TPHIMRHFFTTQSLIAGARPEDVMHFLGHASLQTTKQYTHIKEERAHNVTD 378 >gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 288 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H+ RH++A LL+ G + + ++GHS + T Y + + EIYD+ Sbjct: 235 HSFRHAYARKLLAEGVSIGIVSHLMGHSNVQVTIDFYGRFSHDELQEIYDK 285 >gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] Length = 321 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308 >gi|237801947|ref|ZP_04590408.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024805|gb|EGI04861.1| hypothetical protein POR16_24188 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 137 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 85 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 120 >gi|169351266|ref|ZP_02868204.1| hypothetical protein CLOSPI_02045 [Clostridium spiroforme DSM 1552] gi|169292328|gb|EDS74461.1| hypothetical protein CLOSPI_02045 [Clostridium spiroforme DSM 1552] Length = 90 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH+F T L + + +S+Q I+GHS +S T Sbjct: 35 TPHILRHTFCTRLANRNMNPKSLQYIMGHSNISIT 69 >gi|330832258|ref|YP_004401083.1| integrase family protein [Streptococcus suis ST3] gi|329306481|gb|AEB80897.1| integrase family protein [Streptococcus suis ST3] Length = 385 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H +RH F T L G + LGH+ L TT+ YT++ +R + D Sbjct: 328 TPHIMRHFFTTQSLIAGARPEDVMHFLGHASLQTTKQYTHIKEERAHNVTD 378 >gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] Length = 321 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308 >gi|328542264|ref|YP_004302373.1| integrase family protein [polymorphum gilvum SL003B-26A1] gi|326412013|gb|ADZ69076.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 216 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 21/34 (61%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 LRH F +S G L +Q LGH++LSTT IY Sbjct: 167 LRHGFGVAAVSAGIPLNMVQKWLGHAQLSTTAIY 200 >gi|171779673|ref|ZP_02920629.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281775|gb|EDT47209.1| hypothetical protein STRINF_01510 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 379 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L G L++I +GHS TT QIYT++ E+ D Sbjct: 323 TSHIFRHTLVSFLAEKGVPLKAIMDRVGHSDSKTTIQIYTHITKNMRTEVVD 374 >gi|196048148|ref|ZP_03115325.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB108] gi|196020885|gb|EDX59615.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB108] Length = 368 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH++AT+ + DL + + +GH+ + TT +YTN++ Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 344 >gi|153806196|ref|ZP_01958864.1| hypothetical protein BACCAC_00451 [Bacteroides caccae ATCC 43185] gi|149130873|gb|EDM22079.1| hypothetical protein BACCAC_00451 [Bacteroides caccae ATCC 43185] Length = 217 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T++T RHS+AT G + I LGH + TTQIY Sbjct: 152 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 191 >gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TIGR4] gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae TIGR4] gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae CGSP14] gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974] gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae TIGR4] gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CGSP14] gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104] gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200] gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17545] Length = 321 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308 >gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 391 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+ AT LL +G DL+ + LGHS ++ T IY +V Sbjct: 320 HGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHV 359 >gi|256845938|ref|ZP_05551396.1| phage integrase [Fusobacterium sp. 3_1_36A2] gi|256719497|gb|EEU33052.1| phage integrase [Fusobacterium sp. 3_1_36A2] Length = 351 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRHS A++LLSNG ++ + LGH ++ TT IY ++ Sbjct: 297 VHDLRHSHASYLLSNGVNIVILSRRLGHEKVQTTLNIYCHI 337 >gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 AH+LR + AT+ L + D+ +Q LGH+ ++TT+IY + ++ Sbjct: 263 AHSLRATAATNALDHQADIAKVQEWLGHANIATTRIYDHRRTR 305 >gi|229006821|ref|ZP_04164454.1| Integrase/recombinase [Bacillus mycoides Rock1-4] gi|228754443|gb|EEM03855.1| Integrase/recombinase [Bacillus mycoides Rock1-4] Length = 322 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR FA +LL G ++ I LGHS L+ T Y +++ + + E Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316 >gi|167589982|ref|ZP_02382370.1| putative bacteriophage integrase [Burkholderia ubonensis Bu] Length = 54 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L++ G L ++ +LGHS ++ T+ Y ++ Sbjct: 2 HDLRHTFASWLVTAGVSLYVVKDLLGHSSITVTERYAHL 40 >gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155] gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA++ + +G + + S+LGH +++ T YT+V Sbjct: 318 HDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHV 356 >gi|315654864|ref|ZP_07907769.1| phage integrase [Mobiluncus curtisii ATCC 51333] gi|315490825|gb|EFU80445.1| phage integrase [Mobiluncus curtisii ATCC 51333] Length = 381 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT +S G +++S+Q +LGHS S T Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349 >gi|291544956|emb|CBL18065.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 441 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS A+ LL+NG +++IQ LGHS + T Sbjct: 360 HDLRHSCASLLLANGVSMKAIQEWLGHSTFNVT 392 >gi|284000174|ref|YP_003377861.1| site-specific recombinase [Escherichia coli O26:H-] gi|283445114|gb|ADB20458.1| site-specific recombinase [Escherichia coli O26:H-] gi|325699449|gb|ADZ45180.1| site-specific recombinase [Escherichia coli] Length = 114 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 40 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 83 >gi|157159819|ref|YP_001457137.1| phage integrase family site specific recombinase [Escherichia coli HS] gi|157065499|gb|ABV04754.1| site-specific recombinase, phage integrase family [Escherichia coli HS] Length = 173 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 121 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 170 >gi|146283724|ref|YP_001173877.1| phage integrase family site specific recombinase [Pseudomonas stutzeri A1501] gi|145571929|gb|ABP81035.1| site-specific recombinase, phage integrase family [Pseudomonas stutzeri A1501] Length = 206 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 154 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 205 >gi|85373664|ref|YP_457726.1| phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786747|gb|ABC62929.1| phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 212 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 32/51 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A+ + G++R+IQ +LGHS++ T Y V+ + + + ++T Sbjct: 160 HSLRRTKASIIYKATGNIRAIQILLGHSKIENTVRYLGVDIEDALTLAEKT 210 >gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118] Length = 322 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309 >gi|319950766|ref|ZP_08024656.1| putative transposase [Dietzia cinnamea P4] gi|319435567|gb|EFV90797.1| putative transposase [Dietzia cinnamea P4] Length = 94 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F T L G DL +Q++LGH+ + T Y ++ + +D Sbjct: 35 HALRHTFGTVLAEAGVDLAVMQALLGHAHVDITARYVHLAPVHVKGEFD 83 >gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++ +HL G L+ IQ ++GH+ + T Y +++ Sbjct: 333 HDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLS 372 >gi|325678336|ref|ZP_08157958.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109957|gb|EGC04151.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 377 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H+LRH +A+ L++ G D ++ LGHS +STT N N+ Y Sbjct: 329 HSLRHFYASALINEGVDAAAVSGALGHSVISTTIPVPNSNTNPHSSTY 376 >gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae Hungary19A-6] gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae G54] gi|221231667|ref|YP_002510819.1| integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200] gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae G54] gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141] gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200] gi|332201355|gb|EGJ15425.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA47368] Length = 321 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 269 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 308 >gi|187922252|ref|YP_001893894.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713446|gb|ACD14670.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 408 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS A LLS G ++ I +LGH +T +Y + + +M I Sbjct: 352 HVLRHSRAASLLSGGVSIKVIGDVLGHRSERSTAVYLKLATDDLMAI 398 >gi|75994500|ref|YP_325614.1| replication protein [Escherichia coli O157:H7 EDL933] gi|2226434|gb|AAB61764.1| ORF3 [Plasmid IncF] gi|3822168|gb|AAC70122.1| replication protein [Escherichia coli O157:H7] Length = 118 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 44 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 87 >gi|330971363|gb|EGH71429.1| integrase family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 142 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRHS +HL DL ++S+ GH+RL TT + + ++ Sbjct: 89 ATTHWLRHSCFSHLAQVTWDLVRVRSLAGHARLDTTSRFLRAEANKL 135 >gi|328911558|gb|AEB63154.1| putative tyrosine recombinase XerC-like protein [Bacillus amyloliquefaciens LL3] Length = 292 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT L G DL +I LG++ ++ Q YT K+M + Sbjct: 237 TPHMLRHTLATELAKRGWDLSTIARFLGNT-VAVVQRYTIPTEKQMAD 283 >gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 290 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYD 54 H LRH+FA L+ G ++ ++ +LGH +L TT Y V K + +Y+ Sbjct: 237 HMLRHTFAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKALENLYN 289 >gi|295090167|emb|CBK76274.1| Site-specific recombinase XerC [Clostridium cf. saccharolyticum K10] Length = 467 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV-------NSKRMMEIYDQT 56 H+LRHS T+ L NGGD++S+Q GH++L +Y+++ N+KR + + Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQLKMVADVYSHIIDEDRRLNAKRFEDAFYSG 414 Query: 57 HPSITQKD 64 H + + D Sbjct: 415 HKTEDELD 422 >gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 406 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385 >gi|239907662|ref|YP_002954403.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797528|dbj|BAH76517.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 352 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + +RH FAT LL GGDL ++ ++GHS + T Sbjct: 296 YDIRHLFATTLLQEGGDLSAVSKLMGHSSVHMT 328 >gi|224535503|ref|ZP_03676042.1| hypothetical protein BACCELL_00367 [Bacteroides cellulosilyticus DSM 14838] gi|224522870|gb|EEF91975.1| hypothetical protein BACCELL_00367 [Bacteroides cellulosilyticus DSM 14838] Length = 385 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+H RH+FAT + L+N + ++ +LGH +STT+IY V Sbjct: 328 TSHIARHTFATTVCLANDIPVATLSRMLGHKHVSTTEIYAKV 369 >gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 283 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y ++ Sbjct: 231 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHL 269 >gi|168699178|ref|ZP_02731455.1| hypothetical protein GobsU_06630 [Gemmata obscuriglobus UQM 2246] Length = 443 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 LRH+F T + G L + Q +LGHSR TQ+Y N EI Sbjct: 395 LRHTFGTEVRRVYG-LEAAQVLLGHSRADVTQVYAERNESLAAEI 438 >gi|67924958|ref|ZP_00518346.1| Phage integrase [Crocosphaera watsonii WH 8501] gi|67853195|gb|EAM48566.1| Phage integrase [Crocosphaera watsonii WH 8501] Length = 316 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S + H R +F + LLSNG DL ++Q + GHS T Y Sbjct: 258 SFSPHDFRRTFCSDLLSNGVDLVTVQKLAGHSSPDVTAKY 297 >gi|332827311|gb|EGK00076.1| hypothetical protein HMPREF9455_03600 [Dysgonomonas gadei ATCC BAA-286] Length = 391 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYT 42 T H RHSFA +LL D++++ S+LGHS L T+ YT Sbjct: 332 TWHCARHSFAVNLLGECQTDIKTVASLLGHSGLKHTEKYT 371 >gi|315286853|gb|EFU46270.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3] gi|323955383|gb|EGB51153.1| phage integrase [Escherichia coli H263] Length = 200 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 25/51 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H L HS L + G D R IQ LGH + T YT N+ R I+D+ Sbjct: 141 HMLHHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRA 191 >gi|301311432|ref|ZP_07217359.1| integrase [Bacteroides sp. 20_3] gi|300830518|gb|EFK61161.1| integrase [Bacteroides sp. 20_3] Length = 407 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F T + L+N L+++ +LGHS TQ Y V K +ME Sbjct: 348 TVHVARHTFGTTVTLANNVSLQNVSKMLGHSSTRMTQHYARVLDKNIME 396 >gi|302036994|ref|YP_003797316.1| phage integrase (fragment, C-terminal) [Candidatus Nitrospira defluvii] gi|300605058|emb|CBK41391.1| Phage integrase (fragment, C-terminal) [Candidatus Nitrospira defluvii] Length = 70 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 26/33 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H++RH++A+ L++NG +L+ +Q LGH+ ++ T Sbjct: 2 HSVRHTYASRLIANGENLKYVQEQLGHASITIT 34 >gi|300856340|ref|YP_003781324.1| putative phage-like integrase [Clostridium ljungdahlii DSM 13528] gi|300436455|gb|ADK16222.1| predicted phage-related integrase [Clostridium ljungdahlii DSM 13528] Length = 393 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH++AT N L++I +LGHS + T IYT+V Sbjct: 335 HALRHTYATKQFENNIPLKTISMLLGHSSIEITANIYTHV 374 >gi|29349324|ref|NP_812827.1| site-specific recombinase IntIA [Bacteroides thetaiotaomicron VPI-5482] gi|29341232|gb|AAO79021.1| site-specific recombinase IntIA [Bacteroides thetaiotaomicron VPI-5482] Length = 316 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHS+AT+ G + I LGH + TTQIY Sbjct: 252 AVTSYTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIY 291 >gi|73662951|ref|YP_301732.1| hypothetical protein SSP1642 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495466|dbj|BAE18787.1| probable truncated integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 242 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51 T+H LRH+ ++LL+N + I LGH +S TT+IY+++ ++ +E Sbjct: 182 TSHALRHTHCSYLLANDVSIYYISKRLGHKNISVTTEIYSHLLEEKYLE 230 >gi|289432035|ref|YP_003461908.1| integrase [Dehalococcoides sp. GT] gi|289432165|ref|YP_003462038.1| integrase family protein [Dehalococcoides sp. GT] gi|288945755|gb|ADC73452.1| integrase family protein [Dehalococcoides sp. GT] gi|288945885|gb|ADC73582.1| integrase family protein [Dehalococcoides sp. GT] Length = 231 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 2 STTAHTLRHSFATHL--LSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H LR +FA H L + GD +R +Q LGH ++TT Y V+ + E Y++ Sbjct: 166 NVSPHKLRDAFAVHAVKLDDSGDGIRLLQEHLGHQSITTTMKYRKVSGEEQKEWYEK 222 >gi|332829975|gb|EGK02603.1| hypothetical protein HMPREF9455_00853 [Dysgonomonas gadei ATCC BAA-286] Length = 69 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 23/35 (65%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 RHSFAT L +G ++ I LGHS L TTQIY + Sbjct: 20 RHSFATILKRSGINVAIISEALGHSDLKTTQIYLD 54 >gi|312621006|ref|YP_003993734.1| site-specific recombinase, phage integrase family [Photobacterium damselae subsp. damselae] gi|311872727|emb|CBX86821.1| site-specific recombinase, phage integrase family [Photobacterium damselae subsp. damselae] Length = 499 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA++ G + I +LGHSR S T Y +V+ Sbjct: 313 HDLRHTFASYAALQGNSVPMIAKMLGHSRFSMTLRYAHVH 352 >gi|229162634|ref|ZP_04290594.1| Phage integrase [Bacillus cereus R309803] gi|228620897|gb|EEK77763.1| Phage integrase [Bacillus cereus R309803] Length = 387 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H LRH+ A LL +G +L+ IQ LGH + T+ IY++++ K Sbjct: 327 HGLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNIYSHISDK 369 >gi|304311457|ref|YP_003811055.1| Phage integrase, probably fragment [gamma proteobacterium HdN1] gi|304313109|ref|YP_003812707.1| phage integrase [gamma proteobacterium HdN1] gi|301797190|emb|CBL45408.1| Phage integrase, probably fragment [gamma proteobacterium HdN1] gi|301798842|emb|CBL47077.1| phage integrase [gamma proteobacterium HdN1] Length = 310 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 4/51 (7%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMME 51 AH LRH+ T L ++ +L IQ +LGH+ L++TQ+Y + + +++++E Sbjct: 243 AHRLRHTLGTRLGTADDANLLVIQQLLGHASLTSTQVYVHCSIGQARKVLE 293 >gi|298384856|ref|ZP_06994415.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_14] gi|298262000|gb|EFI04865.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_14] Length = 316 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHS+AT+ G + I LGH + TTQIY Sbjct: 252 AVTSYTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIY 291 >gi|293392349|ref|ZP_06636674.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM 4582] gi|291425146|gb|EFE98350.1| type 1 fimbriae regulatory protein FimB [Serratia odorifera DSM 4582] Length = 179 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 22/45 (48%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRHS L G D R IQ LGH + T YT NS R + Sbjct: 135 HMLRHSCGFALADQGVDTRLIQDYLGHRNIQHTVTYTASNSARFL 179 >gi|262040764|ref|ZP_06013994.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041888|gb|EEW42929.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 80 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 23/43 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HT RH THL G L I + GH L TTQIY +++ Sbjct: 5 TTHTFRHLRLTHLARAGWKLHEIATYAGHRDLRTTQIYIHLSG 47 >gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 406 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385 >gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY----TNVNSKRMMEIYDQTH 57 T H RH+ AT LL +G + + ILGHS + T +Y T + + I DQ Sbjct: 381 TGWHDFRHTQATQLLRSGSSPKVVSGILGHSDVGITLNVYEHTETEIFRAPLERIADQLL 440 Query: 58 PSITQ 62 P++T+ Sbjct: 441 PTVTK 445 >gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB] gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB] Length = 421 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 27/40 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H+LRH+ A+ L++NG +L ++ ILGH+ T Y++ Sbjct: 347 TFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRYSH 386 >gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 349 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H LRH++AT L G ++ Q +LGH+ +STT+ IYT++ + + + Q Sbjct: 287 TWHMLRHTYATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQDEHIAQAARQ 339 >gi|291452490|ref|ZP_06591880.1| LOW QUALITY PROTEIN: integrase [Streptomyces albus J1074] gi|291355439|gb|EFE82341.1| LOW QUALITY PROTEIN: integrase [Streptomyces albus J1074] Length = 80 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRHS AT LL G DL I+ +LGH+ + T +Y +V + + D Sbjct: 8 HDLRHSTATLLLQQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRQAVD 57 >gi|283851146|ref|ZP_06368430.1| TOBE domain protein [Desulfovibrio sp. FW1012B] gi|283573542|gb|EFC21518.1| TOBE domain protein [Desulfovibrio sp. FW1012B] Length = 393 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +LRHS A LL +G L +Q +LGHS L T IY + + + Sbjct: 197 SLRHSRAVELLRSGVPLPVVQVMLGHSSLVLTSIYCSFSDQ 237 >gi|239905648|ref|YP_002952387.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795512|dbj|BAH74501.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 22/37 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T + LRH FAT LL G DL ++ ++GHS + T Sbjct: 313 PTRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMT 349 >gi|228948202|ref|ZP_04110486.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811560|gb|EEM57897.1| Integrase/recombinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 322 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LR FA +LL G ++ I LGHS L+ T Y +++ + + E Sbjct: 271 HALRRGFAKNLLKKGANIALISKALGHSDLAVTTRYLHLDKEEVAE 316 >gi|26246328|ref|NP_752367.1| Type 1 fimbriae regulatory protein fimB [Escherichia coli CFT073] gi|91209384|ref|YP_539370.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89] gi|117622590|ref|YP_851503.1| hypothetical protein APECO1_1681 [Escherichia coli APEC O1] gi|218557234|ref|YP_002390147.1| DNA recombinase [Escherichia coli S88] gi|237707693|ref|ZP_04538174.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA] gi|26106726|gb|AAN78911.1|AE016756_94 Type 1 fimbriae Regulatory protein fimB [Escherichia coli CFT073] gi|91070958|gb|ABE05839.1| type 1 fimbriae regulatory protein FimX [Escherichia coli UTI89] gi|115511714|gb|ABI99788.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218364003|emb|CAR01668.1| Putative DNA recombinase similar to Type 1 fimbriae Regulatory proteins [Escherichia coli S88] gi|226898903|gb|EEH85162.1| type 1 fimbriae regulatory protein fimB [Escherichia sp. 3_2_53FAA] Length = 200 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 148 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 197 >gi|332521882|ref|ZP_08398330.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042484|gb|EGI78687.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 431 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+FAT L+NG + + ++ HS + TQ+Y + Sbjct: 379 HISRHTFATRALNNGMRIEHVSKLMDHSDIGITQVYAKI 417 >gi|328950733|ref|YP_004368068.1| integrase family protein [Marinithermus hydrothermalis DSM 14884] gi|328451057|gb|AEB11958.1| integrase family protein [Marinithermus hydrothermalis DSM 14884] Length = 344 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 25/47 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRH+ T DL +LGHS ++TT IY ++ + + E Sbjct: 289 AHMLRHTAGTRFYKATRDLHVTARLLGHSNINTTAIYAKMDLEGLRE 335 >gi|306818222|ref|ZP_07451953.1| phage integrase [Mobiluncus mulieris ATCC 35239] gi|304649186|gb|EFM46480.1| phage integrase [Mobiluncus mulieris ATCC 35239] Length = 266 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H LRH F T DL ++ +++GH++ TT+ Y ++ +M Sbjct: 211 TGHALRHRFGTVAYRATHDLLAVGAVMGHAKTDTTKRYIQLDLDPLM 257 >gi|291302817|ref|YP_003514095.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290572037|gb|ADD45002.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 498 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ A+ L G DL ++ LGH+ +STT+ Y Sbjct: 386 HKLRHAHASWALKGGADLHIVKERLGHANISTTERY 421 >gi|260170847|ref|ZP_05757259.1| integrase [Bacteroides sp. D2] Length = 245 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 174 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212 >gi|254884980|ref|ZP_05257690.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254837773|gb|EET18082.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 368 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 314 AHAFRHFFAKMFLKKTKDIIQLADLLGHGSVDTTRIY 350 >gi|228911572|ref|ZP_04075361.1| Integrase [Bacillus thuringiensis IBL 200] gi|228848075|gb|EEM92940.1| Integrase [Bacillus thuringiensis IBL 200] Length = 364 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H LRH++AT+ + DL + + +GH+ + TT +YTN++ Sbjct: 303 SPHKLRHTYATNHYNENKDLVLLANQMGHNSMETTSLYTNID 344 >gi|170695171|ref|ZP_02886319.1| phage integrase [Burkholderia graminis C4D1M] gi|170140023|gb|EDT08203.1| phage integrase [Burkholderia graminis C4D1M] Length = 120 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 32/52 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH++L++T Y + +E+ +QT Sbjct: 68 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLASTVRYLGIEVDDALEMSEQTE 119 >gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 330 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFA+ ++ G L +I +LGH+ TT Y ++ + + E D+ S+ Sbjct: 268 HDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICSSL 322 >gi|324010159|gb|EGB79378.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 57-2] Length = 187 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184 >gi|307323616|ref|ZP_07602826.1| integrase family protein [Streptomyces violaceusniger Tu 4113] gi|306891105|gb|EFN22081.1| integrase family protein [Streptomyces violaceusniger Tu 4113] Length = 81 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y Sbjct: 13 SPHALRRACATHNYERGVDLLAIQQLLGHWTVSSTMRYVRPSATFIEDAY 62 >gi|253570329|ref|ZP_04847738.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_6] gi|251840710|gb|EES68792.1| site-specific recombinase IntIA [Bacteroides sp. 1_1_6] Length = 316 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++T+RHS+AT+ G + I LGH + TTQIY Sbjct: 252 AVTSYTIRHSWATNAKYQGIPIEMISESLGHKSIKTTQIY 291 >gi|237725749|ref|ZP_04556230.1| transposase [Bacteroides sp. D4] gi|229435557|gb|EEO45634.1| transposase [Bacteroides dorei 5_1_36/D4] Length = 113 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH++AT + LSN + ++ +LGH + TTQIY + ++++ Sbjct: 45 TFHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKV 91 >gi|226325969|ref|ZP_03801487.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758] gi|225205511|gb|EEG87865.1| hypothetical protein COPCOM_03782 [Coprococcus comes ATCC 27758] Length = 373 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T+H RH+FAT + G + +++ILGHS L+ T +Y++V Sbjct: 316 TSHVFRHTFATRAIEAGMPPQVLKTILGHSSLAMTMDLYSHV 357 >gi|153806453|ref|ZP_01959121.1| hypothetical protein BACCAC_00717 [Bacteroides caccae ATCC 43185] gi|149131130|gb|EDM22336.1| hypothetical protein BACCAC_00717 [Bacteroides caccae ATCC 43185] Length = 237 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 172 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 210 >gi|20800429|ref|NP_620818.1| PmrA [Rhodococcus erythropolis] gi|2460007|gb|AAC45806.1| putative plasmid multimer resolution protein [Rhodococcus erythropolis] Length = 306 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRHS TH +G + + GH+ + + Y N +++ +M QT P+ ++ Sbjct: 246 TLHQLRHSRLTHAAEDGASTPMLMRMSGHTSVRSLARYANPSAESLMRWQAQTDPAARRR 305 >gi|15675393|ref|NP_269567.1| putative integrase [Streptococcus phage 370.2] gi|19746443|ref|NP_607579.1| integrase [Streptococcus pyogenes MGAS8232] gi|21910681|ref|NP_664949.1| putative integrase - phage associated [Streptococcus pyogenes MGAS315] gi|28876315|ref|NP_795489.1| putative integrase [Streptococcus pyogenes phage 315.3] gi|28895629|ref|NP_801979.1| integrase (phage associated) [Streptococcus pyogenes SSI-1] gi|71911035|ref|YP_282585.1| integrase [Streptococcus pyogenes phage 5005.2] gi|94994724|ref|YP_602822.1| DNA integration/recombination/inversion protein [Streptococcus phage 10750.3] gi|139473486|ref|YP_001128202.1| phage integrase [Streptococcus pyogenes str. Manfredo] gi|13622578|gb|AAK34288.1| putative integrase - phage associated [Streptococcus phage 370.2] gi|19748645|gb|AAL98078.1| putative integrase [Streptococcus pyogenes MGAS8232] gi|21904883|gb|AAM79752.1| putative integrase - phage-associated [Streptococcus pyogenes phage 315.3] gi|28810878|dbj|BAC63812.1| putative integrase (phage associated) [Streptococcus pyogenes SSI-1] gi|71853817|gb|AAZ51840.1| phi5005.2 integrase [Streptococcus pyogenes phage 5005.2] gi|94548232|gb|ABF38278.1| DNA integration/recombination/inversion protein [Streptococcus phage 10750.3] gi|134271733|emb|CAM29966.1| phage integrase [Streptococcus pyogenes str. Manfredo] gi|322412210|gb|EFY03118.1| putative integrase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 380 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L+SI +GH+ TT QIYT+V K + D Sbjct: 324 TSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKKMKSSVAD 375 >gi|311110801|ref|ZP_07712198.1| integrase/recombinase, phage integrase family [Lactobacillus gasseri MV-22] gi|311065955|gb|EFQ46295.1| integrase/recombinase, phage integrase family [Lactobacillus gasseri MV-22] Length = 295 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 243 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 282 >gi|296163718|ref|ZP_06846432.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886039|gb|EFG65943.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 335 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S T H +RH+ A H+L G D+ I LGH +TT +Y + Sbjct: 258 SVTPHIVRHATAMHMLQAGVDVTLIALWLGHESAATTHMYIEAD 301 >gi|262382217|ref|ZP_06075355.1| integrase [Bacteroides sp. 2_1_33B] gi|262297394|gb|EEY85324.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFA L + I +LGH + TTQIY Sbjct: 245 TSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIY 282 >gi|225378538|ref|ZP_03755759.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM 16841] gi|257437991|ref|ZP_05613746.1| phage integrase [Faecalibacterium prausnitzii A2-165] gi|225209641|gb|EEG91995.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM 16841] gi|257199651|gb|EEU97935.1| phage integrase [Faecalibacterium prausnitzii A2-165] Length = 386 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H LRH++ T+L+ G D +++Q + GH TT IY V + E+ Sbjct: 326 TPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEEL 375 >gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA DL + +LGHS ++TT+IYT Sbjct: 221 HNLRHLFARTYYKLEKDLSRLADLLGHSSVTTTRIYT 257 >gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato K40] gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] Length = 320 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|168335500|ref|ZP_02693581.1| integrase family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 351 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 + T H LR ++ T L GD+ + ILGH ++TT + Y N++ K+ Sbjct: 291 TITPHRLRTTYGTRLYEETGDIYLVADILGHKDVNTTKKYYVNMDDKK 338 >gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 412 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA+H + L I +LGH ++TT Y +++ ++E Sbjct: 334 HDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDDGPVIE 379 >gi|331666613|ref|ZP_08367487.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271] gi|330910118|gb|EGH38628.1| putative DNA recombinase [Escherichia coli AA86] gi|331065837|gb|EGI37721.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA271] Length = 156 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 104 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 153 >gi|150401949|ref|YP_001329243.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150032979|gb|ABR65092.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 324 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H+LRH AT LL G + ++ ILGH L TT Y++ ++ Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313 >gi|77415041|ref|ZP_00791110.1| integrase/recombinase, phage integrase family [Streptococcus agalactiae 515] gi|77158908|gb|EAO70150.1| integrase/recombinase, phage integrase family [Streptococcus agalactiae 515] Length = 265 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 212 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQAIIDR 261 >gi|294648177|ref|ZP_06725718.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|292636481|gb|EFF54958.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] Length = 239 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 168 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 206 >gi|291529765|emb|CBK95351.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 367 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH+LR S AT + DL QS+LGH+ +STT Y Sbjct: 314 AHSLRSSCATKIYDKSLDLVYTQSVLGHANISTTMRYV 351 >gi|191173558|ref|ZP_03035084.1| site-specific recombinase, phage integrase family [Escherichia coli F11] gi|190906153|gb|EDV65766.1| site-specific recombinase, phage integrase family [Escherichia coli F11] Length = 200 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 148 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 197 >gi|168185276|ref|ZP_02619940.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|182671679|gb|EDT83640.1| tyrosine recombinase XerD [Clostridium botulinum Bf] Length = 212 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 23/46 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSF L + I + GH L+TT+IYT K + E Sbjct: 162 HALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELRE 207 >gi|167571697|ref|ZP_02364571.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786] Length = 151 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ Sbjct: 98 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLS 137 >gi|160937772|ref|ZP_02085131.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC BAA-613] gi|288870075|ref|ZP_06409618.1| transposase [Clostridium hathewayi DSM 13479] gi|158439211|gb|EDP16964.1| hypothetical protein CLOBOL_02664 [Clostridium bolteae ATCC BAA-613] gi|288868522|gb|EFD00821.1| transposase [Clostridium hathewayi DSM 13479] Length = 408 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GHS + T Y Sbjct: 330 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 367 >gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 363 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F + L G L +I ++GHS L T+ Y+ ++ Sbjct: 309 HTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSKLS 348 >gi|313899314|ref|ZP_07832827.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312955887|gb|EFR37542.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 396 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 T H +RH+F T L + G + +++Q ++GHS ++ T +YT Sbjct: 341 TPHVMRHTFCTRLANAGMNPKALQYVMGHSNITITLNLYT 380 >gi|310829805|ref|YP_003962162.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612] gi|308741539|gb|ADO39199.1| hypothetical protein ELI_4257 [Eubacterium limosum KIST612] Length = 304 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 23/36 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRHSFAT L G + ++ +LGHS ++ T Sbjct: 246 VTFHSLRHSFATRALELGASIHTLSELLGHSSVAFT 281 >gi|167573456|ref|ZP_02366330.1| integrase family protein [Burkholderia oklahomensis C6786] Length = 345 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS A+ +++ G DL ++ +LGH ++T+ Y ++ + ++ + Sbjct: 280 HDLRHSAASEMINGGIDLYTVGGVLGHKTTTSTKRYAHLVTDKLAD 325 >gi|160883750|ref|ZP_02064753.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483] gi|156110835|gb|EDO12580.1| hypothetical protein BACOVA_01722 [Bacteroides ovatus ATCC 8483] Length = 245 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 174 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212 >gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 405 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA+ L+ G DL +++ +LGHS + T Y Sbjct: 351 HDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYA 387 >gi|332882851|ref|ZP_08450460.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679171|gb|EGJ52159.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 55 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RHS+A +S G D+ ++ +L H +STTQIY + RM+ Sbjct: 12 HCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYA--GAPRMVA 55 >gi|304389965|ref|ZP_07371922.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326858|gb|EFL94099.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 381 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT +S G +++S+Q +LGHS S T Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349 >gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 26/42 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H+LRH+F + L G D+R+I + GH L+ Y++++ Sbjct: 296 TWHSLRHTFCSRLAMAGVDIRTIAQLAGHKTLAMAMRYSHLS 337 >gi|294645948|ref|ZP_06723617.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|292638709|gb|EFF57058.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] Length = 239 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 168 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 206 >gi|255994620|ref|ZP_05427755.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] gi|255993333|gb|EEU03422.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] Length = 375 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LR + AT L+ G + +Q +LGH +++TTQ+Y Sbjct: 315 SPHKLRATTATSLIGRGESIYDVQLLLGHEQVTTTQLYA 353 >gi|226361765|ref|YP_002779543.1| transposase [Rhodococcus opacus B4] gi|226240250|dbj|BAH50598.1| putative transposase [Rhodococcus opacus B4] Length = 374 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+ AT + G ++Q LGH+ +T+IYT V+ ++ + Y Sbjct: 317 TPHALRHTHATVMWEAGMRELALQRRLGHASPESTRIYTRVSDIQVRDEY 366 >gi|225387162|ref|ZP_03756926.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme DSM 15981] gi|225046735|gb|EEG56981.1| hypothetical protein CLOSTASPAR_00914 [Clostridium asparagiforme DSM 15981] Length = 280 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY +S + D+ Sbjct: 227 HSFRHRFAKNFLNKFNDISLLADLMGHESIETTRIYLTKSSLEQRKFIDK 276 >gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 279 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + T H RH+F T L++ G + + + GH + + YT V KR Y++ H Sbjct: 224 NVTPHMFRHTFITDLINKGAEEGVVADLAGHEDIKRLKDYTEVARKRKKLEYEKLH 279 >gi|158422452|ref|YP_001523744.1| phage integrase [Azorhizobium caulinodans ORS 571] gi|158329341|dbj|BAF86826.1| phage integrase [Azorhizobium caulinodans ORS 571] Length = 384 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H +RH +A L +GGD+ +++ L HS + TT++Y Sbjct: 310 HDMRHLYAVEFLRSGGDIYTLKEHLRHSSVKTTEMY 345 >gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ] gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ] Length = 421 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H +RH FA+ L+ G DL +++ +LGHS L T Y ++ Sbjct: 367 HDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHL 405 >gi|110640587|ref|YP_668315.1| putative phage integrase [Escherichia coli 536] gi|300977187|ref|ZP_07173776.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1] gi|110342179|gb|ABG68416.1| putative phage integrase [Escherichia coli 536] gi|300308376|gb|EFJ62896.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 200-1] gi|324010960|gb|EGB80179.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 60-1] Length = 187 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184 >gi|307628206|gb|ADN72510.1| putative phage integrase [Escherichia coli UM146] Length = 187 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184 >gi|303326887|ref|ZP_07357329.1| integrase [Desulfovibrio sp. 3_1_syn3] gi|302862875|gb|EFL85807.1| integrase [Desulfovibrio sp. 3_1_syn3] Length = 360 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 11/58 (18%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + LRH+FA+ L +G +L+ + I+GH+ N K ++ Y T+P +K Sbjct: 297 YDLRHAFASRSLDHGAELKCVAEIMGHA-----------NEKMIVRFYRHTNPRARRK 343 >gi|300310209|ref|YP_003774301.1| site-specific phage recombinase/integrase [Herbaspirillum seropedicae SmR1] gi|300072994|gb|ADJ62393.1| site-specific phage recombinase/integrase protein [Herbaspirillum seropedicae SmR1] Length = 325 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHS A+ +++ G DL ++ ++LGH S+T+ Y ++ + + Sbjct: 270 HDLRHSAASSMINEGVDLYTVGAVLGHKTASSTKRYAHLATSSL 313 >gi|152973526|ref|YP_001338577.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|324120112|ref|YP_004249873.1| integrase [Klebsiella pneumoniae] gi|329996380|ref|ZP_08302453.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|150958318|gb|ABR80347.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|323388240|gb|ADX60389.1| integrase [Klebsiella pneumoniae] gi|328539420|gb|EGF65431.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 246 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215 >gi|91780836|ref|YP_556043.1| Phage integrase [Burkholderia xenovorans LB400] gi|91693496|gb|ABE36693.1| Phage integrase [Burkholderia xenovorans LB400] Length = 208 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 207 >gi|84516489|ref|ZP_01003848.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53] gi|84509525|gb|EAQ05983.1| hypothetical protein SKA53_07756 [Loktanella vestfoldensis SKA53] Length = 156 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 31/47 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R ++ T L + G +R + ++ GH+ +STTQ Y +VNS ++ Sbjct: 103 ASSHSGRRTYITRLANKGVGVRLLAALAGHAHISTTQRYIDVNSDQL 149 >gi|324006204|gb|EGB75423.1| hypothetical protein HMPREF9532_04130 [Escherichia coli MS 57-2] gi|324015226|gb|EGB84445.1| hypothetical protein HMPREF9533_00706 [Escherichia coli MS 60-1] Length = 108 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 27/49 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T HT RHS+ H+L + + IQ++ GH + ++YT V + M Sbjct: 34 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 82 >gi|315657216|ref|ZP_07910100.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492319|gb|EFU81926.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 381 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT +S G +++S+Q +LGHS S T Sbjct: 317 HDLRHTAATLAVSAGANVKSVQRMLGHSSASLT 349 >gi|315640425|ref|ZP_07895535.1| phage integrase family integrase/recombinase [Enterococcus italicus DSM 15952] gi|315483785|gb|EFU74271.1| phage integrase family integrase/recombinase [Enterococcus italicus DSM 15952] Length = 411 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 22/41 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+F+T G + I L HS + TT+IY N Sbjct: 347 TNPHKLRHTFSTLAREGGATMAQISQALTHSDIKTTEIYVN 387 >gi|303243822|ref|ZP_07330162.1| integrase family protein [Methanothermococcus okinawensis IH1] gi|302485758|gb|EFL48682.1| integrase family protein [Methanothermococcus okinawensis IH1] Length = 325 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+LRH A LL+ G L ++ +LGH + TT Y++ N + Sbjct: 272 HSLRHGRAVDLLNKGVPLDVVKEVLGHKSIDTTLFYSHSNDR 313 >gi|239905618|ref|YP_002952357.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795482|dbj|BAH74471.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 382 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 22/36 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T + LRH FAT LL G DL ++ ++GHS + T Sbjct: 322 TRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMT 357 >gi|226312929|ref|YP_002772823.1| hypothetical protein BBR47_33420 [Brevibacillus brevis NBRC 100599] gi|226095877|dbj|BAH44319.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 211 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 S H+LRH+ A L+ G D++ IQ LGH + T +Y +++ K Sbjct: 147 SMPIHSLRHTHAVLLMETGADMKYIQERLGHGSMQITADVYAHISKK 193 >gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 325 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT LL + +Q ILGH +STT IY++VN Sbjct: 268 HDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSHVN 308 >gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 322 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 270 HKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVN 309 >gi|329954699|ref|ZP_08295759.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328527240|gb|EGF54244.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 410 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ Sbjct: 342 STHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITNQKI 388 >gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] Length = 322 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 269 PHKFRRTMATRAIDKGMPIEQVQKLLGHSQIDTTMQYAIVN 309 >gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus casei str. Zhang] gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus casei str. Zhang] Length = 382 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LR SF T+++ +G D+ ++Q + GHS T +IY +N E D+ Sbjct: 320 TLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIDK 372 >gi|284005601|ref|YP_003391421.1| integrase family protein [Spirosoma linguale DSM 74] gi|283820785|gb|ADB42622.1| integrase family protein [Spirosoma linguale DSM 74] Length = 404 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+LRH+ LL G L +Q L H + TTQ YT K+ + Y Q P Sbjct: 352 SAHSLRHTVGQLLLEEGVSLEHVQQHLRHETMETTQFYTK---KKTRKTYFQQMP 403 >gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 382 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LR SF T+++ +G D+ ++Q + GHS T +IY +N E D+ Sbjct: 320 TLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIDK 372 >gi|229599881|ref|YP_002860872.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|229260405|gb|ACQ51441.1| integrase/recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 212 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 23/46 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSF L + I + GH L+TT+IYT K + E Sbjct: 162 HALRHSFCKALAIQNVGIEVIADLAGHEDLNTTRIYTRQTQKELRE 207 >gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 398 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+FA+ +++G L +Q +LGH+ TTQ Y ++ S Sbjct: 330 HDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAHLQS 370 >gi|330998518|ref|ZP_08322340.1| phage integrase, SAM-like domain protein [Paraprevotella xylaniphila YIT 11841] gi|329568282|gb|EGG50094.1| phage integrase, SAM-like domain protein [Paraprevotella xylaniphila YIT 11841] Length = 459 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMME 51 T + RH++AT + G DL + + LGH L TTQIY +++++ +ME Sbjct: 400 TTYVARHTWATTMRDMGYDLSIVSTGLGHDNLKTTQIYLSSIDTTVVME 448 >gi|327390069|gb|EGE88413.1| phage integrase family protein [Streptococcus pneumoniae GA04375] Length = 177 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 125 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 164 >gi|325529739|gb|EGD06591.1| integrase family protein [Burkholderia sp. TJI49] Length = 169 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 117 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 168 >gi|262407328|ref|ZP_06083876.1| integrase [Bacteroides sp. 2_1_22] gi|262354136|gb|EEZ03228.1| integrase [Bacteroides sp. 2_1_22] Length = 323 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290 >gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 320 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii M21/2] gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii M21/2] Length = 392 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHS 33 H LRH+FAT L G D++++ +LGH+ Sbjct: 325 HALRHTFATTCLQAGCDVKTLSELLGHA 352 >gi|159904432|ref|YP_001548094.1| integrase family protein [Methanococcus maripaludis C6] gi|159885925|gb|ABX00862.1| integrase family protein [Methanococcus maripaludis C6] Length = 324 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H+LRH AT LL G + ++ ILGH L TT Y++ ++ Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313 >gi|150008234|ref|YP_001302977.1| integrase [Parabacteroides distasonis ATCC 8503] gi|255015378|ref|ZP_05287504.1| integrase [Bacteroides sp. 2_1_7] gi|256839485|ref|ZP_05544994.1| integrase [Parabacteroides sp. D13] gi|298375193|ref|ZP_06985150.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19] gi|301309266|ref|ZP_07215210.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3] gi|149936658|gb|ABR43355.1| integrase [Parabacteroides distasonis ATCC 8503] gi|256738415|gb|EEU51740.1| integrase [Parabacteroides sp. D13] gi|298267693|gb|EFI09349.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19] gi|300832948|gb|EFK63574.1| tyrosine site-specific recombinase [Bacteroides sp. 20_3] Length = 310 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++++RHSFA L + I +LGH + TTQIY Sbjct: 245 TSYSIRHSFAMILKEQDVPIEMISELLGHKSIKTTQIY 282 >gi|154175422|ref|YP_001408733.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter curvus 525.92] gi|112802099|gb|EAT99443.1| oxygen-independent coproporphyrinogen III oxidase [Campylobacter curvus 525.92] Length = 267 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH FA + L++ D+ + ++GH+ + TT+IY + ++ D Sbjct: 214 HSFRHLFAKNFLASCNDIAFLADLMGHTSIQTTRIYLRRTAAEQRDLID 262 >gi|148544647|ref|YP_001272017.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184154000|ref|YP_001842341.1| integrase [Lactobacillus reuteri JCM 1112] gi|227365077|ref|ZP_03849107.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|325682980|ref|ZP_08162496.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531681|gb|ABQ83680.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183225344|dbj|BAG25861.1| integrase [Lactobacillus reuteri JCM 1112] gi|227069885|gb|EEI08278.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|324977330|gb|EGC14281.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 322 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309 >gi|119715338|ref|YP_922303.1| phage integrase family protein [Nocardioides sp. JS614] gi|119535999|gb|ABL80616.1| phage integrase family protein [Nocardioides sp. JS614] Length = 383 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH +A+ L++ G D+ ++Q LGH++ +TT Sbjct: 298 HDLRHFYASGLIAAGCDVVTVQRSLGHAKATTT 330 >gi|295100462|emb|CBK98007.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 340 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYDQTHPSIT 61 H +RH+ A H+ DL ++ LGHS + TT IY + K + + D PS+ Sbjct: 261 HLMRHTKAMHIYDADNDLVHVRDFLGHSDIKTTDIYARSSLTMKQKALERVSDSPVPSMP 320 Query: 62 QKDK 65 K Sbjct: 321 SWQK 324 >gi|293413559|ref|ZP_06656208.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185] gi|291433617|gb|EFF06590.1| type 1 fimbriae regulatory protein FimB [Escherichia coli B185] Length = 206 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 154 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 203 >gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42 T H RH+FAT L GG+ +I+ ++GH + T+ +YT Sbjct: 290 TPHDCRHTFATRLNDAGGNATAIKKMIGHESFALTEKVYT 329 >gi|207739284|ref|YP_002257677.1| integrase/recombinase protein (c-terminal fragment) [Ralstonia solanacearum IPO1609] gi|206592658|emb|CAQ59564.1| putative integrase/recombinase protein (c-terminal fragment) [Ralstonia solanacearum IPO1609] Length = 111 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 + H +RH+ A+H L+ G +L +++ L H+ +STT IY +V R +E Sbjct: 54 ASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIE 105 >gi|209917522|ref|YP_002291606.1| putative phage integrase [Escherichia coli SE11] gi|227884672|ref|ZP_04002477.1| phage integrase family site-specific recombinase [Escherichia coli 83972] gi|300817163|ref|ZP_07097381.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1] gi|300977263|ref|ZP_07173794.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|301045933|ref|ZP_07193118.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|306813204|ref|ZP_07447397.1| putative phage integrase [Escherichia coli NC101] gi|331645493|ref|ZP_08346597.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605] gi|331656378|ref|ZP_08357340.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206] gi|331675968|ref|ZP_08376680.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591] gi|82570975|gb|ABB83955.1| HbiF [Escherichia coli] gi|209910781|dbj|BAG75855.1| putative phage integrase [Escherichia coli SE11] gi|222032128|emb|CAP74867.1| Type 1 fimbriae regulatory protein FimX [Escherichia coli LF82] gi|227838273|gb|EEJ48739.1| phage integrase family site-specific recombinase [Escherichia coli 83972] gi|281177498|dbj|BAI53828.1| putative phage integrase [Escherichia coli SE15] gi|294493486|gb|ADE92242.1| site-specific recombinase, phage integrase family [Escherichia coli IHE3034] gi|300302050|gb|EFJ58435.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 185-1] gi|300409904|gb|EFJ93442.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 45-1] gi|300530139|gb|EFK51201.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 107-1] gi|305853967|gb|EFM54406.1| putative phage integrase [Escherichia coli NC101] gi|307552233|gb|ADN45008.1| putative phage integrase [Escherichia coli ABU 83972] gi|312944907|gb|ADR25734.1| putative phage integrase [Escherichia coli O83:H1 str. NRG 857C] gi|315287721|gb|EFU47124.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 110-3] gi|315295185|gb|EFU54520.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 153-1] gi|315300325|gb|EFU59561.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 16-3] gi|323953063|gb|EGB48931.1| phage integrase [Escherichia coli H252] gi|323958739|gb|EGB54440.1| phage integrase [Escherichia coli H263] gi|324020450|gb|EGB89669.1| type 1 fimbriae regulatory protein FimB [Escherichia coli MS 117-3] gi|331045655|gb|EGI17781.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M605] gi|331054626|gb|EGI26635.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli TA206] gi|331076026|gb|EGI47308.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli H591] Length = 187 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 135 HMLRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 184 >gi|26990496|ref|NP_745921.1| phage integrase family site specific recombinase [Pseudomonas putida KT2440] gi|24985471|gb|AAN69385.1|AE016575_3 site-specific recombinase, phage integrase family [Pseudomonas putida KT2440] Length = 208 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQTE 207 >gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 330 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFA+ ++ G L +I +LGH+ TT Y ++ + + E D+ S+ Sbjct: 268 HDLRHSFASVAIAKGIPLATIGKLLGHALPETTARYAHLADEVISESADRICSSL 322 >gi|323487455|ref|ZP_08092750.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum WAL-14163] gi|323399224|gb|EGA91627.1| hypothetical protein HMPREF9474_04501 [Clostridium symbiosum WAL-14163] Length = 418 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GHS + T Y Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIIMTLNY 384 >gi|239908709|ref|YP_002955451.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239798576|dbj|BAH77565.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 299 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKRMMEIYDQTHPS 59 H +RH A+ L+ N L +IQ IL H L+TTQ Y + N++ +M +T+ S Sbjct: 228 HAIRHLSASILIQNQVPLPTIQKILRHKNLTTTQGYIHELDNARDLMAALSRTNKS 283 >gi|188024479|ref|ZP_02997125.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188018594|gb|EDU56634.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] Length = 255 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%) Query: 2 STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + + HTLR SF T+ L++ GD L+ +Q ++GH + TT Y + +++ ++Y Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVY 244 >gi|167567251|ref|ZP_02360167.1| putative bacteriophage integrase [Burkholderia oklahomensis EO147] gi|167570579|ref|ZP_02363453.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786] gi|167581270|ref|ZP_02374144.1| putative bacteriophage integrase [Burkholderia thailandensis TXDOH] Length = 126 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y ++ Sbjct: 74 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHL 112 >gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 373 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F + L G L +I ++GHS L T+ Y+ ++ Sbjct: 311 HTLRHTFGSWLAQRGVPLYTIAVLMGHSSLEMTKRYSKLS 350 >gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301] gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301] Length = 308 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|237713543|ref|ZP_04544024.1| integrase [Bacteroides sp. D1] gi|229446525|gb|EEO52316.1| integrase [Bacteroides sp. D1] Length = 320 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 249 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 287 >gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12] gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12] Length = 397 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A++ +S+G ++ + +LGH++L TT Y ++ Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHTQLQTTMRYAHL 361 >gi|45358306|ref|NP_987863.1| integrase/recombinase [Methanococcus maripaludis S2] gi|44921064|emb|CAF30299.1| Probable integrase/recombinase [Methanococcus maripaludis S2] Length = 324 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H+LRH AT LL G + ++ ILGH L TT Y++ ++ Sbjct: 271 HSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERK 313 >gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18] gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18] Length = 356 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS A++L NG L I +LGH L+ + Y +++ + + Sbjct: 297 HDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQHTSRV 343 >gi|227889876|ref|ZP_04007681.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849567|gb|EEJ59653.1| phage integrase/recombinase [Lactobacillus johnsonii ATCC 33200] Length = 322 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R S AT + G + +Q ILGHS++ TT Y VN Sbjct: 270 HKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVN 309 >gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 361 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 ++ T H+LRH+ AT LL NG +++ +Q LGH+ Sbjct: 319 INFTMHSLRHTHATLLLENGANMKDMQKRLGHN 351 >gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402] gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402] Length = 388 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L +G L+ +Q+ LGHS + TT IYT++ Sbjct: 330 VHGFRHTHASLLFESGATLKEVQTRLGHSDIKTTMDIYTHI 370 >gi|3127076|gb|AAC71705.1| Orf86 [Pseudomonas stutzeri] Length = 85 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR+IQ +LGH++L +T Y + +E+ +QT Sbjct: 33 HTMRRTKASLIYRRTKNLRAIQILLGHTKLESTVRYLGIEVDDALEMAEQT 83 >gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 353 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+ A+ L ++G ++ +Q+ LGH+ + TT IYT+V Sbjct: 293 VHDLRHTHASLLFASGASIKYVQTRLGHADVKTTLNIYTHV 333 >gi|317500307|ref|ZP_07958532.1| transposase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089689|ref|ZP_08338587.1| hypothetical protein HMPREF1025_02170 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898248|gb|EFV20294.1| transposase [Lachnospiraceae bacterium 8_1_57FAA] gi|330404524|gb|EGG84067.1| hypothetical protein HMPREF1025_02170 [Lachnospiraceae bacterium 3_1_46FAA] Length = 399 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSEISVTLNTYTHVN 385 >gi|317124016|ref|YP_004098128.1| integrase [Intrasporangium calvum DSM 43043] gi|315588104|gb|ADU47401.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 329 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH-PSIT 61 T HTLRH+ A LL G D+ I LGH S+T +Y + + D+T P +T Sbjct: 254 TMHTLRHTAAMRLLQAGVDVAVIALWLGHENTSSTDVYLHADMTIKQAAIDRTRDPQVT 312 >gi|291334742|gb|ADD94387.1| hypothetical protein EIKCOROL_00560 [uncultured phage MedDCM-OCT-S05-C113] Length = 266 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 24/41 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH FA+H++ NGG+L+ + ++ G S + Y V Sbjct: 213 TIHDWRHHFASHIMMNGGNLKVLMALGGWSSTRSVMRYAGV 253 >gi|282164838|ref|YP_003357223.1| putative site-specific recombinase [Methanocella paludicola SANAE] gi|282157152|dbj|BAI62240.1| putative site-specific recombinase [Methanocella paludicola SANAE] Length = 324 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 1 MSTTAHTLRHSFATHLLS--NGGDLRSIQSI---LGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H LRHS ATHL + NG +I + LGHS +STT IY + + + D Sbjct: 259 LKTYPHKLRHSRATHLANGINGNKPWAIGVLSKYLGHSSISTTAIYVHTSDEEQKRYLDM 318 Query: 56 T 56 T Sbjct: 319 T 319 >gi|103488014|ref|YP_617575.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98978091|gb|ABF54242.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 463 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH+ + +S+G + +ILGH+ +T IY +V Sbjct: 357 TPHTLRHTMGSTAISSGEAMAFTGAILGHTNPRSTAIYAHV 397 >gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 320 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 303 >gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 361 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH FA+ + G D++++ ILGHS + T I+T++ KR Sbjct: 306 HVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIHTSMEHKR 351 >gi|302562581|ref|ZP_07314923.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302480199|gb|EFL43292.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 120 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHS A LL G DL I+ +LGH+ + +Y +V + + D S+++ D Sbjct: 28 HNLRHSTAALLLEQGVDLVVIKELLGHAHIG---VYAHVRLRLQRQAIDTLGNSLSRADD 84 Query: 66 KN 67 N Sbjct: 85 DN 86 >gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 271 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 219 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 254 >gi|323438828|gb|EGA96566.1| hypothetical protein SAO11_2347 [Staphylococcus aureus O11] Length = 409 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T HTLRH+ + L G +L++IQ+ +GHS TT IYT+V K Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDK 390 >gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 345 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH+ A HL +G DL I LGH ++ TT IY +++ Sbjct: 268 HLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLIYAYADTE 309 >gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 375 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42 M+ H RH+FAT L + G + SI+ ++GH+ +TT+ IYT Sbjct: 318 MNHLPHDCRHTFATRLSNFGANATSIKRLIGHTSYATTEKIYT 360 >gi|257451847|ref|ZP_05617146.1| hypothetical protein F3_02191 [Fusobacterium sp. 3_1_5R] gi|317058401|ref|ZP_07922886.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684077|gb|EFS20912.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 397 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+LRH+FAT + G DL+ +Q LGH+ + T Sbjct: 334 TPHSLRHTFATIMHDEGMDLKDLQMWLGHASIKMT 368 >gi|182684305|ref|YP_001836052.1| hypothetical protein SPCG_1335 [Streptococcus pneumoniae CGSP14] gi|182629639|gb|ACB90587.1| hypothetical protein SPCG_1335 [Streptococcus pneumoniae CGSP14] Length = 85 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 21 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 58 >gi|168362056|ref|ZP_02695235.1| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903405|gb|EDT49694.1| site-specific recombinase, phage integrase family protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 144 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H+LR SFAT +L G + +++ +GH+ + TT Y N Sbjct: 102 TPHSLRRSFATFMLIKGANPKTVMLQMGHANIQTTFSYLN 141 >gi|160887483|ref|ZP_02068486.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483] gi|156107894|gb|EDO09639.1| hypothetical protein BACOVA_05502 [Bacteroides ovatus ATCC 8483] Length = 245 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 174 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 212 >gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter concisus 13826] gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 329 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRHSFA +++ +L IQ L H ++ TT IY + Sbjct: 278 HILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYAD 315 >gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC 17025] gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC 17025] Length = 384 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+ +++G L I +LGH+++ TT Y ++ ++ + D ++ Q Sbjct: 325 HDLRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVAQNLRQ 381 >gi|120556117|ref|YP_960468.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120325966|gb|ABM20281.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 204 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H++R S AT + +LR++Q +LGH+ +S+T Y V + +EI + Sbjct: 152 HSMRRSKATLIYKKTKNLRAVQLLLGHTNMSSTVRYLGVEVEDALEIAE 200 >gi|307544254|ref|YP_003896733.1| site-specific recombinase, phage integrase family [Halomonas elongata DSM 2581] gi|307216278|emb|CBV41548.1| site-specific recombinase, phage integrase family [Halomonas elongata DSM 2581] Length = 451 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +TLRH+FA+ L+ +G DL ++ ++ H+ + TT Sbjct: 379 YTLRHNFASQLVMSGTDLLTVSKLMAHADIQTT 411 >gi|229010700|ref|ZP_04167897.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048] gi|228750374|gb|EEM00203.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048] Length = 680 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 T H RH++A +L+ G D+ ++Q +L H+ T Y + N+KR Sbjct: 477 TNHQFRHTYAVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKR 523 >gi|291086747|ref|ZP_06344319.2| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291076812|gb|EFE14176.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 473 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 9/61 (14%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYT-------NVNSKRMMEIYDQT 56 H+LRHS T+ L NGGD++S+Q GH++L +Y+ +N+KR + + Sbjct: 360 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQLKMVADVYSHIIDEDRRINAKRFEDAFYSG 419 Query: 57 H 57 H Sbjct: 420 H 420 >gi|188518220|ref|ZP_03003757.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|198273781|ref|ZP_03206315.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554523|ref|YP_002284801.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225551624|ref|ZP_03772570.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|188998014|gb|EDU67111.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|198249536|gb|EDY74318.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542024|gb|ACI60253.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379439|gb|EEH01804.1| integrase-recombinase protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 255 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%) Query: 2 STTAHTLRHSFATHLLSNG-----GD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + + HTLR SF T+ L++ GD L+ +Q ++GH + TT Y + +++ ++Y Sbjct: 187 NVSLHTLRRSFITNFLTSNDNYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVY 244 >gi|167762101|ref|ZP_02434228.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC 43183] gi|167700060|gb|EDS16639.1| hypothetical protein BACSTE_00451 [Bacteroides stercoris ATCC 43183] Length = 406 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385 >gi|167034031|ref|YP_001669262.1| integrase family protein [Pseudomonas putida GB-1] gi|166860519|gb|ABY98926.1| integrase family protein [Pseudomonas putida GB-1] Length = 206 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 154 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 204 >gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] Length = 320 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|315034182|gb|EFT46114.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] Length = 331 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LR FAT+LL G + I LGH+ L TT Y ++S Sbjct: 280 HGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDS 320 >gi|303248069|ref|ZP_07334335.1| TOBE domain protein [Desulfovibrio fructosovorans JJ] gi|302490626|gb|EFL50531.1| TOBE domain protein [Desulfovibrio fructosovorans JJ] Length = 394 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +LRHS A LL G L +Q +LGHS L T IY + + + I + Sbjct: 198 SLRHSRAVELLRGGVPLPVVQVMLGHSSLVLTSIYCSFSDQDCQRIVNH 246 >gi|298483358|ref|ZP_07001536.1| integrase [Bacteroides sp. D22] gi|298270487|gb|EFI12070.1| integrase [Bacteroides sp. D22] Length = 323 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290 >gi|323693661|ref|ZP_08107860.1| integrase [Clostridium symbiosum WAL-14673] gi|323502275|gb|EGB18138.1| integrase [Clostridium symbiosum WAL-14673] Length = 425 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GHS + T Y Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHSNIVMTLNY 384 >gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1] gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3] gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98] gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1] gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3] gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98] Length = 377 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S + H+ RH+ A+ L +G ++ +Q LGH+ ++TT IYT+V Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHV 359 >gi|210617178|ref|ZP_03291445.1| hypothetical protein CLONEX_03667 [Clostridium nexile DSM 1787] gi|210149453|gb|EEA80462.1| hypothetical protein CLONEX_03667 [Clostridium nexile DSM 1787] Length = 72 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI---YDQTHPSIT 61 H+LRH++AT + G + +Q + GH+ + TT Y +V + ++ + Q P + Sbjct: 2 HSLRHTYATRAIERGVQPKVLQQLSGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVK 61 Query: 62 QKDKKN 67 QK +K Sbjct: 62 QKGRKK 67 >gi|170761567|ref|YP_001787246.1| integrase [Clostridium botulinum A3 str. Loch Maree] gi|169408556|gb|ACA56967.1| integrase [Clostridium botulinum A3 str. Loch Maree] Length = 657 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LRH+ A + G + IQ ILGH+ L T Y V+ + E + T Sbjct: 471 HSLRHTRAKEYVEQGMGISIIQQILGHTSLQMTVHYATVSENALYEKWKAT 521 >gi|315919179|ref|ZP_07915419.1| integrase [Bacteroides sp. D2] gi|313693054|gb|EFS29889.1| integrase [Bacteroides sp. D2] Length = 321 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|311697055|gb|ADP99928.1| phage integrase family protein [marine bacterium HP15] Length = 204 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H++R S AT + +LR++Q +LGH+ +S+T Y V + +EI + Sbjct: 152 HSMRRSKATLIYKKTKNLRAVQLLLGHTNMSSTVRYLGVEVEDALEIAE 200 >gi|309778493|ref|ZP_07673388.1| putative site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] gi|308913748|gb|EFP59593.1| putative site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] Length = 352 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNS---KRMMEIYDQTHPSI 60 H+LRH+FAT L G ++ ++LGH+ + T+ +Y + + K+ ++ D +HP + Sbjct: 291 HSLRHTFATRALEAGIPMKYCSAMLGHASTAITENLYAHASEDQLKKEIKKLDASHPPV 349 >gi|296877324|ref|ZP_06901364.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 15912] gi|296431844|gb|EFH17651.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 15912] Length = 423 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 H RH+ A+ +L++G + + +Q +GH +STT IY ++ R E D ++Q Sbjct: 361 HLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQ 418 >gi|302381218|ref|YP_003817041.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302191846|gb|ADK99417.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 386 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH T L+ GDLR +QS+LGH+ + +T Y++ Sbjct: 312 HGTRHHVGTTTLAETGDLRMVQSLLGHADIKSTLRYSH 349 >gi|157372468|ref|YP_001480457.1| integrase family protein [Serratia proteamaculans 568] gi|157324232|gb|ABV43329.1| integrase family protein [Serratia proteamaculans 568] Length = 153 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 26/52 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRH+ L + G D R IQ LGH + T +YT N+ R I Sbjct: 100 VPTHPHMLRHACGYFLANLGMDTRLIQDYLGHRNIHHTVLYTASNAMRFQAI 151 >gi|325168619|ref|YP_004280409.1| Phage integrase [Agrobacterium sp. H13-3] gi|325064342|gb|ADY68031.1| Phage integrase [Agrobacterium sp. H13-3] Length = 117 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H++R + A + G+LR++Q +LGH++L +T Y V + I +Q Sbjct: 65 HSMRRTKAAQIYKKTGNLRAVQILLGHTKLESTVHYLGVEVDDALRIAEQ 114 >gi|319945859|ref|ZP_08020109.1| phage integrase family site-specific recombinase [Streptococcus australis ATCC 700641] gi|319747924|gb|EFW00168.1| phage integrase family site-specific recombinase [Streptococcus australis ATCC 700641] Length = 423 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 H RH+ A+ +L++G + + +Q +GH +STT IY ++ R E D ++Q Sbjct: 361 HLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQ 418 >gi|309777756|ref|ZP_07672705.1| putative integrase/recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] gi|308914522|gb|EFP60313.1| putative integrase/recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] Length = 260 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH FA DL + +LGHS + TT+IYT + + ++ D+ Sbjct: 196 HNLRHLFAYTFYRMEKDLVRLADLLGHSSIETTRIYTKTSIQACQKMIDR 245 >gi|304560203|gb|ADM42867.1| hypothetical protein ETAF_2763 [Edwardsiella tarda FL6-60] Length = 209 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+ L G D R IQ LGH + T YT N+ R ++ + + Sbjct: 131 ICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVCYTASNAARFQGVWQRKKRLV 190 Query: 61 T 61 T Sbjct: 191 T 191 >gi|294809329|ref|ZP_06768039.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|294443421|gb|EFG12178.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 323 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290 >gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 286 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + T H LRH+F L+ G L + + GH+ L+TT YT Sbjct: 228 VEVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 269 >gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41] gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41] Length = 390 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + T H LRH+ + L G L+ +Q LGHS + TT IY +V K E Sbjct: 329 TITTHGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKKAKEE 379 >gi|29347067|ref|NP_810570.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29338965|gb|AAO76764.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 316 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287 >gi|116627651|ref|YP_820270.1| integrase [Streptococcus thermophilus LMD-9] gi|116100928|gb|ABJ66074.1| Integrase [Streptococcus thermophilus LMD-9] Length = 388 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60 H RH+ A+ LL++G + +Q LGHS+LS T IY+++ N+K+ + Y+ SI Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKKAVSFYEVALKSI 388 >gi|323442575|gb|EGB00203.1| hypothetical protein SAO46_1495 [Staphylococcus aureus O46] Length = 409 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T HTLRH+ + L G +L++IQ+ +GHS TT IYT+V K Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQARVGHSDYKTTLDIYTHVTDK 390 >gi|315919565|ref|ZP_07915805.1| integrase [Bacteroides sp. D2] gi|313693440|gb|EFS30275.1| integrase [Bacteroides sp. D2] Length = 318 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290 >gi|293373998|ref|ZP_06620337.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|299149024|ref|ZP_07042086.1| integrase [Bacteroides sp. 3_1_23] gi|292630959|gb|EFF49598.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|298513785|gb|EFI37672.1| integrase [Bacteroides sp. 3_1_23] Length = 318 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290 >gi|149003724|ref|ZP_01828569.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|147758286|gb|EDK65287.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] Length = 87 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L+ D+ + ++GH + TT+IY + I D+ Sbjct: 34 HSFRHLFAKNFLAKYNDIALLADLMGHESIETTRIYLRKTATEQQNIVDK 83 >gi|332359932|gb|EGJ37746.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1056] Length = 407 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 23/40 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT G L +I L HS LSTT++Y N Sbjct: 348 TPHMLRHTGATLAKKAGMSLEAISEALTHSDLSTTRVYVN 387 >gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 362 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS A+ LL+ G + +Q ILGHS ++ T M IY PS+ Sbjct: 297 HDLRHSLASILLAMGVHPKVVQEILGHSSITIT-----------MNIYSHVMPSM 340 >gi|294808413|ref|ZP_06767166.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|294444341|gb|EFG13055.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 334 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 263 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 301 >gi|260171255|ref|ZP_05757667.1| integrase [Bacteroides sp. D2] Length = 316 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288 >gi|225869605|ref|YP_002745552.1| integrase [Streptococcus equi subsp. equi 4047] gi|225699009|emb|CAW92097.1| integrase [Streptococcus equi subsp. equi 4047] Length = 355 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH++A+ L+ G DL SI +LGH L+ T Sbjct: 294 HSLRHTYASFLILKGVDLISISQLLGHENLNIT 326 >gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii DSM 18315] gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii DSM 18315] Length = 406 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSIENVAKMLGHADTSVTKHYARV 385 >gi|217980190|ref|YP_002364240.1| integrase family protein [Thauera sp. MZ1T] gi|217508361|gb|ACK55146.1| integrase family protein [Thauera sp. MZ1T] Length = 182 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 22/48 (45%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T YT N R ++ Sbjct: 134 HMLRHACGYALADQGADTRLIQDYLGHRNIQHTVRYTATNPARFERLW 181 >gi|55822750|ref|YP_141191.1| integrase/recombinase [Streptococcus thermophilus CNRZ1066] gi|55738735|gb|AAV62376.1| integrase/recombinase, phage associated [Streptococcus thermophilus CNRZ1066] gi|312278176|gb|ADQ62833.1| Integrase/recombinase, phage associated [Streptococcus thermophilus ND03] Length = 388 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60 H RH+ A+ LL++G + +Q LGHS+LS T IY+++ N+K+ + Y+ SI Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDIYSHLSKENAKKAVSFYEVALKSI 388 >gi|225017445|ref|ZP_03706637.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum DSM 5476] gi|224949855|gb|EEG31064.1| hypothetical protein CLOSTMETH_01371 [Clostridium methylpentosum DSM 5476] Length = 440 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ A+ LL+NG + ++ LGHS +STT Sbjct: 372 HDLRHTCASLLLANGVPMEQVKEWLGHSEISTT 404 >gi|167765392|ref|ZP_02437505.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC 43183] gi|167697020|gb|EDS13599.1| hypothetical protein BACSTE_03780 [Bacteroides stercoris ATCC 43183] Length = 411 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H R++FA+ + LS G + S+ +LGH + TTQ Y +N++++ Sbjct: 350 HVARYTFASQICLSQGVPIESVSRMLGHKHIQTTQRYARLNNEKI 394 >gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX1341] Length = 377 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S + H+ RH+ A+ L +G ++ +Q LGH+ ++TT IYT+V Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHV 359 >gi|289642625|ref|ZP_06474766.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289507534|gb|EFD28492.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 147 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+FA+ L S G R++ +LGHS + T YT+V Sbjct: 61 HDLRHAFASMLFSEGVPARTVMELLGHSTIQLTMNTYTHV 100 >gi|266622075|ref|ZP_06115010.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM 13479] gi|288866224|gb|EFC98522.1| putative INTEGRASE/RECOMBINASE XerD [Clostridium hathewayi DSM 13479] Length = 296 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 24/43 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 H LRH FA DL + ILGHS ++TT+IYT + R Sbjct: 232 HNLRHLFARTYYEIEKDLSKLADILGHSDVNTTRIYTKESGTR 274 >gi|291300706|ref|YP_003511984.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290569926|gb|ADD42891.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 337 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LR +F LL G DL + Q+I+GH+ +TT Y R E D+ Sbjct: 276 SPHDLRRTFIGSLLDAGVDLATTQAIVGHASPATTARYDRRPDHRRREAIDR 327 >gi|206579294|ref|YP_002238658.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206568352|gb|ACI10128.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 332 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT RH T L G D+ I + GH R+ +T +Y +++++ + ++ T S+ Sbjct: 261 STHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNCTVASL 317 >gi|170765536|ref|ZP_02900347.1| site-specific recombinase [Escherichia albertii TW07627] gi|170124682|gb|EDS93613.1| site-specific recombinase [Escherichia albertii TW07627] Length = 213 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + +IYT V Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEIYTRV 182 >gi|260060855|ref|YP_003193935.1| putative bacteriophage integrase [Robiginitalea biformata HTCC2501] gi|88784985|gb|EAR16154.1| putative bacteriophage integrase [Robiginitalea biformata HTCC2501] Length = 353 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T + RH+FA LL +G +L+++ +GHS +T Y N K E D+ Sbjct: 295 TFYCARHTFACQLLIHGANLKTVADAMGHSSTQSTLKYLNYVQKLQDEAIDK 346 >gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0012] Length = 372 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 S + H+ RH+ A+ L +G ++ +Q LGH+ ++TT IYT+V Sbjct: 311 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHV 354 >gi|325678051|ref|ZP_08157688.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324110268|gb|EGC04447.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 431 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS A+ LL+NG +++IQ LGHS T Sbjct: 349 HDLRHSCASLLLANGVPMKAIQEWLGHSTFHVT 381 >gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] Length = 308 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] Length = 286 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S H+LRH AT DL ++ ++LGHS ++TTQ Y + + + ++ Sbjct: 228 SYGTHSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKV 278 >gi|126661017|ref|ZP_01732103.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] gi|126617716|gb|EAZ88499.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] Length = 370 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 H RH+FAT +L G + +Q +LGH + TT+ IY++V Sbjct: 315 HLFRHTFATRMLQAGYLDQYVQQLLGHKSIGTTKDIYSHV 354 >gi|114567760|ref|YP_754914.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338695|gb|ABI69543.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 305 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H++RHS+AT LL + +Q ++GHS++S T ++ Y P I Q Sbjct: 235 ATLHSMRHSYATRLLEMNEHPKVVQELMGHSQISMT-----------LDTYSHVMPEIKQ 283 >gi|327197611|ref|YP_004301302.1| gp26 [Brochothrix phage NF5] gi|296245434|gb|ADH03048.1| gp26 [Brochothrix phage NF5] Length = 397 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-------NSKRMMEIYDQ 55 T H LRHS L+ G D++ I LGH+ +STT IYT++ N R+ E ++ Sbjct: 334 TLHALRHSHTVQLIEAGVDIKYISLRLGHADISTTLSIYTHISKELETLNRARINEFFNL 393 Query: 56 THPS 59 + S Sbjct: 394 KNGS 397 >gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] Length = 396 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H+LRH+FA+ L +G + +Q LGH L TT ++Y ++ Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHL 376 >gi|264678073|ref|YP_003277980.1| phage integrase [Comamonas testosteroni CNB-2] gi|262208586|gb|ACY32684.1| phage integrase [Comamonas testosteroni CNB-2] Length = 389 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 8/46 (17%) Query: 4 TAHTLRHSFATHLLSN--------GGDLRSIQSILGHSRLSTTQIY 41 TAH LRH++AT+LL + G L ++ LGH +STT IY Sbjct: 313 TAHMLRHTYATYLLWSLRKSKTFEGEPLLYVRDRLGHRDVSTTMIY 358 >gi|237722569|ref|ZP_04553050.1| integrase [Bacteroides sp. 2_2_4] gi|229448379|gb|EEO54170.1| integrase [Bacteroides sp. 2_2_4] Length = 323 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 290 >gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 396 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H+LRH+FA+ L +G + +Q LGH L TT ++Y ++ Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHL 376 >gi|188586682|ref|YP_001918227.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351369|gb|ACB85639.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 201 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66 LR++FA + ++ D+R +Q LGH + TT KR ++IYD P+I + K Sbjct: 146 VLRNTFAVNFYNDFQDMRKLQLKLGHENIKTT--------KRYLQIYD---PNIAMRPMK 194 >gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965] gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965] gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] Length = 391 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+FAT L++ +++Q +LGH + T IYT+VN+K Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNK 377 >gi|298484133|ref|ZP_07002300.1| integrase [Bacteroides sp. D22] gi|298269723|gb|EFI11317.1| integrase [Bacteroides sp. D22] Length = 321 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 251 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|293370097|ref|ZP_06616662.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292634825|gb|EFF53349.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 321 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 251 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|258515456|ref|YP_003191678.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779161|gb|ACV63055.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 345 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM------MEIYD 54 + H R + AT L NG +L + ILGHS TT++Y + + + +EI + Sbjct: 263 LKVYPHMFRRTRATDLYQNGVELELVSRILGHSSTETTKVYAKPSIEMLRKAIESVEIPE 322 Query: 55 QTH 57 QT+ Sbjct: 323 QTN 325 >gi|237716029|ref|ZP_04546510.1| integrase [Bacteroides sp. D1] gi|262407643|ref|ZP_06084191.1| integrase [Bacteroides sp. 2_1_22] gi|229443676|gb|EEO49467.1| integrase [Bacteroides sp. D1] gi|262354451|gb|EEZ03543.1| integrase [Bacteroides sp. 2_1_22] Length = 321 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288 >gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 373 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT +L +G DL+ I L H R+STT Y++V+ Sbjct: 317 HDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHVD 357 >gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 373 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRH+ AT +L +G DL+ I L H R+STT Y++V+ Sbjct: 317 HDLRHTHATLMLRSGVDLKIISKRLRHGRISTTADFYSHVD 357 >gi|317505564|ref|ZP_07963475.1| phage integrase family site-specific recombinase [Prevotella salivae DSM 15606] gi|315663312|gb|EFV03068.1| phage integrase family site-specific recombinase [Prevotella salivae DSM 15606] Length = 268 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY + I D+ Sbjct: 215 HSFRHRFAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQQAIVDK 264 >gi|309776072|ref|ZP_07671063.1| site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] gi|308916023|gb|EFP61772.1| site-specific recombinase, phage integrase family [Erysipelotrichaceae bacterium 3_1_53] Length = 283 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA S D+ + ILGHS + TT++YT Sbjct: 226 HNLRHLFAFTFYSMEKDVVRLADILGHSSIETTRMYT 262 >gi|255527483|ref|ZP_05394353.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187567|ref|ZP_06855962.1| phage integrase [Clostridium carboxidivorans P7] gi|308390327|ref|YP_003933780.1| phage integrase family protein [Clostridium carboxidivorans P7] gi|255508826|gb|EET85196.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048089|gb|EFG87528.1| phage integrase [Clostridium carboxidivorans P7] gi|308066834|gb|ADO12138.1| phage integrase family protein [Clostridium carboxidivorans P7] Length = 278 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HTLRH + ++ L +G + + + GHS + TT +YTN + + + Sbjct: 226 TPHTLRHFYCSNALESGFSVHEVANQAGHSNIHTTLLYTNPSKEEL 271 >gi|253571807|ref|ZP_04849212.1| integrase [Bacteroides sp. 1_1_6] gi|251838404|gb|EES66490.1| integrase [Bacteroides sp. 1_1_6] Length = 316 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 247 FPVTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287 >gi|237722186|ref|ZP_04552667.1| integrase [Bacteroides sp. 2_2_4] gi|229447996|gb|EEO53787.1| integrase [Bacteroides sp. 2_2_4] Length = 321 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVSIEMISESLGHKSIKTTQIY 288 >gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 407 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRH+ A+ LL L I SILGH+ + +T+ Y +++ Sbjct: 350 HSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLHID 389 >gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2] gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2] Length = 377 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L G ++ +QS LGHS + TT +YT+V Sbjct: 320 HGFRHTHASLLFEAGASIKDVQSRLGHSDIQTTMDVYTHV 359 >gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 390 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 26/37 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 S + H LRH+ A+ +S G +++++Q +LGH++ S T Sbjct: 313 SLSPHDLRHTAASLAISAGANVKAVQRMLGHAKASMT 349 >gi|218133377|ref|ZP_03462181.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC 43243] gi|217992250|gb|EEC58254.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC 43243] gi|291527214|emb|CBK92800.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 379 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51 + H RH+FAT + NG +S+Q +LGH L T +Y +V + + Sbjct: 323 SPHCFRHTFATRAIENGMQPKSVQKLLGHGSLQLTMDLYCHVTDDTLFD 371 >gi|171057464|ref|YP_001789813.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774909|gb|ACB33048.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 339 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 24/44 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + + H LRHS A HLL +G D+ I LGH +TT Y + Sbjct: 262 TISPHCLRHSTAMHLLQSGVDISVIALWLGHESPATTHQYVEAD 305 >gi|332139698|ref|YP_004425436.1| site-specific recombinase, phage integrase family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327549720|gb|AEA96438.1| site-specific recombinase, phage integrase family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 297 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LR +F T LL D+ +++ + GH +STT +Y + K M E Sbjct: 241 VSPHDLRRTFITRLLEQNVDINTVRQMAGHEDISTTIMYDKRDEKVMKE 289 >gi|330902727|gb|EGH33740.1| hypothetical protein PSYJA_34455 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 206 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 161 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 196 >gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 320 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026] Length = 391 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+FAT L++ +++Q +LGH + T IYT+VN+K Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNK 377 >gi|270293715|ref|ZP_06199917.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275182|gb|EFA21042.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 345 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H R++FA+ + LS G + S+ +LGH + TTQ Y +N++++ Sbjct: 284 HMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKI 328 >gi|260173825|ref|ZP_05760237.1| integrase [Bacteroides sp. D2] Length = 252 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 188 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 226 >gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33] gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33] gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33] Length = 308 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1] gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457] gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1] gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28] gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90] Length = 308 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] Length = 379 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 + H LRH+FAT + G +++Q ILGHS + T +Y ++ + + D Sbjct: 316 SMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGITMNLYVHITEEEKQKEID 367 >gi|126726974|ref|ZP_01742812.1| site-specific recombinase, phage integrase family protein [Rhodobacterales bacterium HTCC2150] gi|126703646|gb|EBA02741.1| site-specific recombinase, phage integrase family protein [Rhodobacterales bacterium HTCC2150] Length = 87 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH++A+H + +G L + +LGH+ TT+ Y +++ + + D+ I Q Sbjct: 24 HDLRHTYASHAILSGESLPTTGKLLGHASPRTTKRYAHLDGTTLAKAADKVALEIEQ 80 >gi|120435669|ref|YP_861355.1| phage integrase family protein [fragment] [Gramella forsetii KT0803] gi|117577819|emb|CAL66288.1| phage integrase family protein [fragment] [Gramella forsetii KT0803] Length = 93 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSF-ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT R +F AT L+NG + ++ +LG ++STTQIY V Sbjct: 36 HTARDTFGATVTLANGVPIETVSKLLGPHKISTTQIYAQV 75 >gi|115378862|ref|ZP_01466001.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1] gi|115364144|gb|EAU63240.1| hypothetical protein STIAU_8568 [Stigmatella aurantiaca DW4/3-1] Length = 161 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H LRH++ +HL G L+ IQ ++GH+ + T Y +++ + Sbjct: 95 SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 140 >gi|92117274|ref|YP_577003.1| phage integrase [Nitrobacter hamburgensis X14] gi|91800168|gb|ABE62543.1| phage integrase [Nitrobacter hamburgensis X14] Length = 267 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH F T LL + G+L+ +Q L H + +T Y +V Sbjct: 202 HDFRHDFGTKLLRDSGNLKLVQKALNHRDIKSTLRYAHV 240 >gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] Length = 386 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H+LRH+ AT LL G + +Q LGH++++TT Y ++++K+ Sbjct: 329 HSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTYVHLSNKK 372 >gi|313888363|ref|ZP_07822033.1| site-specific recombinase, phage integrase family [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845643|gb|EFR33034.1| site-specific recombinase, phage integrase family [Peptoniphilus harei ACS-146-V-Sch2b] Length = 411 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H RH+F T L + +++QSILGHS +STT IY + Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390 >gi|322433742|ref|YP_004215954.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321161469|gb|ADW67174.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 346 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H LRH+ A+ L SNG D ++ ++LG S+ + YT ++ + Sbjct: 261 SIHRLRHTLASKLASNGADANTLMNVLGWVSPSSLESYTRLSEE 304 >gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026] gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026] Length = 308 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|254508894|ref|ZP_05121003.1| integrase [Vibrio parahaemolyticus 16] gi|219548208|gb|EED25224.1| integrase [Vibrio parahaemolyticus 16] Length = 391 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH FA+ L+ G DL ++ +LGH+ L T Y ++ Sbjct: 340 HDLRHHFASKLVMAGVDLNVVRELLGHADLKMTLRYAHL 378 >gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium botulinum F str. Langeland] gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 330 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 H LR++FA L +GG + + +LGHS + T Q Y ++ + + Y Q P Sbjct: 267 HQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQAYLDLTDADIRKNYQQFSP 320 >gi|323166227|gb|EFZ52004.1| phage integrase family protein [Shigella sonnei 53G] Length = 108 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 24/48 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHS L + G D R IQ LGH + T YT N+ R I+ Sbjct: 60 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTTSNAGRFYGIW 107 >gi|300813798|ref|ZP_07094105.1| site-specific recombinase, phage integrase family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512088|gb|EFK39281.1| site-specific recombinase, phage integrase family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 411 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H RH+F T L + +++QSILGHS +STT IY + Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390 >gi|296446470|ref|ZP_06888413.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296255966|gb|EFH03050.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 215 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 LRH FA L + L +Q +GH+RL+TT IY + + Sbjct: 145 LRHGFAIDALRHAVPLTLLQKWMGHARLATTAIYADAS 182 >gi|259419438|ref|ZP_05743354.1| putative transposase B [Silicibacter sp. TrichCH4B] gi|259344679|gb|EEW56566.1| putative transposase B [Silicibacter sp. TrichCH4B] Length = 695 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 +AH RH+ T L G +++I +LGH + +Y V+ + ++ Y Sbjct: 508 SAHRFRHTVGTELAEGGARMQTIMDVLGHQSPHMSMVYIRVSDEAVLADY 557 >gi|239623222|ref|ZP_04666253.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522188|gb|EEQ62054.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 306 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + LS D+ + ++GH + TT+IY Sbjct: 252 PHSFRHRFAKNFLSKFNDISLLADLMGHESIETTRIY 288 >gi|189465131|ref|ZP_03013916.1| hypothetical protein BACINT_01475 [Bacteroides intestinalis DSM 17393] gi|189437405|gb|EDV06390.1| hypothetical protein BACINT_01475 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHS+AT L +G ++ I LGH+ L TT+ Y Sbjct: 350 TTYTARHSYATVLKRSGANISYISESLGHTDLRTTEAY 387 >gi|221065591|ref|ZP_03541696.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710614|gb|EED65982.1| integrase family protein [Comamonas testosteroni KF-1] Length = 207 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + T + +LR++Q +LGHS+L +T Y + +EI +QT Sbjct: 155 HSIRRTKPTLIYRRTKNLRAVQLLLGHSKLESTIRYLGIEVDDALEISEQT 205 >gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|154243847|ref|YP_001409420.1| integrase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162969|gb|ABS70184.1| integrase domain protein SAM domain protein [Xanthobacter autotrophicus Py2] Length = 438 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 23/66 (34%) Query: 1 MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37 ++ + H LRH+FA H+L+ G L+ +Q +LGH+ L+T Sbjct: 347 INISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQVQRLLGHASLTT 406 Query: 38 TQIYTN 43 T IY + Sbjct: 407 TYIYLD 412 >gi|329734781|gb|EGG71087.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU045] Length = 470 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 278 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 316 >gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 414 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H +RH FA+ L+ G DL +++ +LGH+ L T Y ++ Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHL 398 >gi|237719411|ref|ZP_04549892.1| integrase [Bacteroides sp. 2_2_4] gi|293370262|ref|ZP_06616822.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|229451271|gb|EEO57062.1| integrase [Bacteroides sp. 2_2_4] gi|292634759|gb|EFF53288.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 315 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T++T RHS+AT G + I LGH + TTQIY Sbjct: 249 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|38637703|ref|NP_942677.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527041|gb|AAP85791.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 332 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ A LL G D I LGH + TTQIY Sbjct: 257 TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294 >gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] Length = 396 Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+ A+ L + G L +I+ LGHS + T+ Y +++ + + D Sbjct: 336 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTRDASDH 385 >gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M] Length = 308 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365] gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445] gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19] gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya] gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686] gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10] gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94] gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1] gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella sp. F5/99] gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40] gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya] gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10] gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94] gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686] gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99] gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1] gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196] gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis 1330] gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365] gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445] gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19] gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya] gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94] gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10] gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99] gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686] gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1] gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196] Length = 308 Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 163 HGLRATAATNALDHEADIAKVQAWLGHANISTTKIY 198 >gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 399 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54 H LRH A+ LLS L ++Q LGH R++TT Y + + R +E+ D Sbjct: 337 HALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAHTLPSSVTRAVEVLD 388 >gi|283471201|emb|CAQ50412.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp. aureus ST398] gi|329734825|gb|EGG71130.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU028] Length = 687 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 533 >gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 404 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH+FA+ + G D++ + ILGH+ ++ T Sbjct: 350 HTLRHTFASSAIRKGVDIKVVSEILGHASVTFT 382 >gi|169824629|ref|YP_001692240.1| putative transposon integrase [Finegoldia magna ATCC 29328] gi|167831434|dbj|BAG08350.1| putative transposon integrase [Finegoldia magna ATCC 29328] Length = 411 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H RH+F T L + +++QSILGHS +STT IY + Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390 >gi|160885743|ref|ZP_02066746.1| hypothetical protein BACOVA_03747 [Bacteroides ovatus ATCC 8483] gi|299149120|ref|ZP_07042181.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23] gi|156108556|gb|EDO10301.1| hypothetical protein BACOVA_03747 [Bacteroides ovatus ATCC 8483] gi|298512787|gb|EFI36675.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23] Length = 238 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T++T RHS+AT G + I LGH + TTQIY Sbjct: 172 SVTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 211 >gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf. novicida 3523] Length = 375 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+F + L+ G + ++ + GH+ + TTQIY Sbjct: 324 HDLRHNFCSMLVMKGVPIYTVAQLAGHADVKTTQIY 359 >gi|323464881|gb|ADX77034.1| Tn554-related, transposase B [Staphylococcus pseudintermedius ED99] Length = 687 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 533 >gi|308069260|ref|YP_003870865.1| Integrase [Paenibacillus polymyxa E681] gi|305858539|gb|ADM70327.1| Integrase [Paenibacillus polymyxa E681] Length = 366 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRHSFAT + L N D+ + LGH+ TT++Y ++ K M Sbjct: 306 TVHKLRHSFATDYYLQN--DIYKTKEQLGHASTETTEVYAHLTDKTM 350 >gi|298385534|ref|ZP_06995092.1| integrase [Bacteroides sp. 1_1_14] gi|298261675|gb|EFI04541.1| integrase [Bacteroides sp. 1_1_14] Length = 316 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS AT LL+ G + +Q +LGHS ++ T M IY PS+ ++ Sbjct: 321 HDLRHSAATILLAKGVHPKVVQELLGHSSIAMT-----------MNIYSHVMPSMRKE 367 >gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 349 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH++ T L + G DL ++++++GH TT Y +++ +++ Y Sbjct: 290 HRLRHTYGTELSAAGIDLLALRALMGHVSPETTARYVHLSIEQLAAEY 337 >gi|291521086|emb|CBK79379.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 340 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 21/38 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H R + AT L NG +L I ILGHS TT+IY Sbjct: 264 CHMFRRTRATGLYRNGVELEMISVILGHSSTETTRIYA 301 >gi|293367759|ref|ZP_06614408.1| transposase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318098|gb|EFE58495.1| transposase [Staphylococcus epidermidis M23864:W2(grey)] Length = 689 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 497 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 535 >gi|307728723|ref|YP_003905947.1| integrase family protein [Burkholderia sp. CCGE1003] gi|307583258|gb|ADN56656.1| integrase family protein [Burkholderia sp. CCGE1003] Length = 208 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 206 >gi|296275196|ref|ZP_06857703.1| putative integrase [Staphylococcus aureus subsp. aureus MR1] Length = 403 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT++ SK MM Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHITDQMSKDMM 396 >gi|212695524|ref|ZP_03303652.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM 7454] gi|212677402|gb|EEB37009.1| hypothetical protein ANHYDRO_00041 [Anaerococcus hydrogenalis DSM 7454] Length = 411 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H RH+F T L + +++QSILGHS +STT IY + Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390 >gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis ATCC 25840] gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis ATCC 25840] Length = 308 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|18026939|gb|AAL55702.1|AF246719_6 probable site-specific recombinase [Escherichia coli] gi|57281857|emb|CAC80510.1| hypothetical protein [Escherichia coli] Length = 236 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 162 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 205 >gi|10955287|ref|NP_052628.1| recombinase [Escherichia coli O157:H7 str. Sakai] gi|168750741|ref|ZP_02775763.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113] gi|168757307|ref|ZP_02782314.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401] gi|168762993|ref|ZP_02788000.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501] gi|168769229|ref|ZP_02794236.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486] gi|168769339|ref|ZP_02794346.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486] gi|168776712|ref|ZP_02801719.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196] gi|168783046|ref|ZP_02808053.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076] gi|168789927|ref|ZP_02814934.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869] gi|168802576|ref|ZP_02827583.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508] gi|195940320|ref|ZP_03085702.1| recombinase [Escherichia coli O157:H7 str. EC4024] gi|208811333|ref|ZP_03253093.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206] gi|208817412|ref|ZP_03258441.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045] gi|208823358|ref|ZP_03263675.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042] gi|209395547|ref|YP_002268408.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115] gi|217329850|ref|ZP_03445925.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588] gi|254667472|ref|YP_003082158.1| replication protein [Escherichia coli O157:H7 str. TW14359] gi|261225655|ref|ZP_05939936.1| replication protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257890|ref|ZP_05950423.1| replication protein [Escherichia coli O157:H7 str. FRIK966] gi|3337019|dbj|BAA31778.1| recombinase [Escherichia coli O157:H7 str. Sakai] gi|187767963|gb|EDU31807.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4196] gi|188015136|gb|EDU53258.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4113] gi|188999555|gb|EDU68541.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4076] gi|189355673|gb|EDU74092.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4401] gi|189361676|gb|EDU80095.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486] gi|189361693|gb|EDU80112.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4486] gi|189366703|gb|EDU85119.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4501] gi|189370568|gb|EDU88984.1| site-specific recombinase [Escherichia coli O157:H7 str. EC869] gi|189375452|gb|EDU93868.1| site-specific recombinase [Escherichia coli O157:H7 str. EC508] gi|208729963|gb|EDZ79180.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4206] gi|208730589|gb|EDZ79288.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4045] gi|208736953|gb|EDZ84638.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4042] gi|209157002|gb|ACI34436.1| site-specific recombinase [Escherichia coli O157:H7 str. EC4115] gi|217317081|gb|EEC25514.1| site-specific recombinase [Escherichia coli O157:H7 str. TW14588] gi|254595824|gb|ACT75184.1| replication protein [Escherichia coli O157:H7 str. TW14359] gi|320187885|gb|EFW62554.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. EC1212] gi|326337138|gb|EGD60974.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1125] gi|326347637|gb|EGD71355.1| RepFIB associated resolvase [Escherichia coli O157:H7 str. 1044] Length = 246 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 326 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT +LS G + + + ILGHS + T Sbjct: 270 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLT 302 >gi|327402602|ref|YP_004343440.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327318110|gb|AEA42602.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 405 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++AT + L N + ++ +LGH ++ TTQIY V Sbjct: 348 HLARHTYATTVTLGNNIPIETVSKLLGHKKIQTTQIYAKV 387 >gi|322376773|ref|ZP_08051266.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus sp. M334] gi|321282580|gb|EFX59587.1| toxin-antitoxin system, toxin component, PIN family [Streptococcus sp. M334] Length = 381 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ A+ L G + I LGH+ + TT +YT++N + +E+ DQ Sbjct: 321 TPHGFRHTHASLLFEAGVTAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVDQ 373 >gi|310829015|ref|YP_003961372.1| integrase family protein [Eubacterium limosum KIST612] gi|308740749|gb|ADO38409.1| integrase family protein [Eubacterium limosum KIST612] Length = 408 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNS 46 H LRH+FATH S + + ILGHS + T Q+Y +V S Sbjct: 354 HALRHTFATHAASKNMQISVLSRILGHSNVGLTLQLYVHVLS 395 >gi|309810350|ref|ZP_07704185.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] gi|308435663|gb|EFP59460.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] Length = 165 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT + G L +Q ILGH+ + TT+ Y + + + + +Q Sbjct: 90 TRHGLRHTGATWMADPGIPLHVLQDILGHASIETTRGYLHPDDRHLASAAEQA 142 >gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2] gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2] Length = 308 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|299146227|ref|ZP_07039295.1| integrase [Bacteroides sp. 3_1_23] gi|298516718|gb|EFI40599.1| integrase [Bacteroides sp. 3_1_23] Length = 321 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038] gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870] gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292] gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68] gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038] gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292] gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870] gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68] Length = 312 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 257 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 297 >gi|227486813|ref|ZP_03917129.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172] gi|297588612|ref|ZP_06947255.1| phage integrase family site-specific recombinase [Finegoldia magna ATCC 53516] gi|304440123|ref|ZP_07400014.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|325849938|ref|ZP_08170977.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|227235198|gb|EEI85213.1| transposon integrase [Anaerococcus lactolyticus ATCC 51172] gi|297573985|gb|EFH92706.1| phage integrase family site-specific recombinase [Finegoldia magna ATCC 53516] gi|304371386|gb|EFM25001.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|325479962|gb|EGC83045.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 411 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H RH+F T L + +++QSILGHS +STT IY + Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDISTTMDIYVD 390 >gi|218132394|ref|ZP_03461198.1| hypothetical protein BACPEC_00253 [Bacteroides pectinophilus ATCC 43243] gi|217992732|gb|EEC58734.1| hypothetical protein BACPEC_00253 [Bacteroides pectinophilus ATCC 43243] Length = 169 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH+F +++ +G + + +Q I+GHS +S T YT+V Sbjct: 112 VTPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHV 154 >gi|319649469|ref|ZP_08003625.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2] gi|317398631|gb|EFV79313.1| hypothetical protein HMPREF1013_00229 [Bacillus sp. 2_A_57_CT2] Length = 373 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 + H LRH+ A LL +G DL+ + LGHS ++ T +Y ++ K Sbjct: 315 SPHGLRHTHAIMLLESGADLKFVSERLGHSTINMTADVYVHITKK 359 >gi|309800161|ref|ZP_07694347.1| integrase/recombinase, phage integrase family [Streptococcus infantis SK1302] gi|308116208|gb|EFO53698.1| integrase/recombinase, phage integrase family [Streptococcus infantis SK1302] Length = 84 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 32 HKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYAMVN 71 >gi|302387561|ref|YP_003823383.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198189|gb|ADL05760.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 285 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA + DL + ILGHS ++TT+IYT Sbjct: 230 HNLRHLFARIYYTLEKDLFRLADILGHSNINTTRIYT 266 >gi|291562350|emb|CBL41166.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 403 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 11/50 (22%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH++ T+L+ G D +++Q + GH NSK M+IY Sbjct: 343 TPHMLRHTYITNLIYKGVDPKTVQYLAGHE-----------NSKTTMDIY 381 >gi|283455528|ref|YP_003360092.1| phage integrase [Bifidobacterium dentium Bd1] gi|283102162|gb|ADB09268.1| Phage integrase [Bifidobacterium dentium Bd1] Length = 244 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S H+LRH AT DL ++ ++LGHS ++TTQ Y + + + ++ Sbjct: 186 SYGTHSLRHRAATQAYLATHDLLAVSTLLGHSSVATTQRYVAMPPEELRKV 236 >gi|265751256|ref|ZP_06087319.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238152|gb|EEZ23602.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 123 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%) Query: 9 RHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-NSK 47 RH+FAT LS G + ++ +LGH+ + TTQIY + NSK Sbjct: 59 RHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSK 99 >gi|260886001|ref|ZP_05736317.2| integrase/recombinase [Prevotella tannerae ATCC 51259] gi|260850862|gb|EEX70731.1| integrase/recombinase [Prevotella tannerae ATCC 51259] Length = 298 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 24/45 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H +RHS A+ LL+NG L I LGH +T Y V+ +M Sbjct: 229 HAMRHSLASRLLANGVSLPVISESLGHDSSLSTMEYLRVDLSSLM 273 >gi|237718365|ref|ZP_04548846.1| integrase [Bacteroides sp. 2_2_4] gi|229452298|gb|EEO58089.1| integrase [Bacteroides sp. 2_2_4] Length = 314 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1] gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1] Length = 408 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T H RH+FAT G + IQ+ LGHS L T +YT+V Sbjct: 332 TPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQMTMDLYTSV 373 >gi|218131565|ref|ZP_03460369.1| hypothetical protein BACEGG_03185 [Bacteroides eggerthii DSM 20697] gi|217986234|gb|EEC52572.1| hypothetical protein BACEGG_03185 [Bacteroides eggerthii DSM 20697] Length = 407 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHS+AT L +G ++ I LGH+ L TT+ Y Sbjct: 350 TTYTARHSYATVLKRSGANISYISESLGHTDLRTTEAY 387 >gi|170745367|ref|YP_001766824.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170658968|gb|ACB28022.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 32/51 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A+ + G+LR++Q +LGH+++ +T Y V+ + + + + T Sbjct: 158 HSLRRTKASLIYKRTGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGT 208 >gi|154244484|ref|YP_001415442.1| integrase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154246966|ref|YP_001417924.1| integrase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158569|gb|ABS65785.1| integrase domain protein SAM domain protein [Xanthobacter autotrophicus Py2] gi|154161051|gb|ABS68267.1| integrase domain protein SAM domain protein [Xanthobacter autotrophicus Py2] Length = 464 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 23/66 (34%) Query: 1 MSTTAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLST 37 ++ + H LRH+FA H+L+ G L+ +Q +LGH+ L+T Sbjct: 373 INISPHQLRHTFAVHMLAMLIQHRIRDAALPAGSMEGYRQMLGDPLQQVQRLLGHASLTT 432 Query: 38 TQIYTN 43 T IY + Sbjct: 433 TYIYLD 438 >gi|108761635|ref|YP_633012.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|108465515|gb|ABF90700.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 334 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH++ +HL G L+ IQ ++GH+ + T Y +++ Sbjct: 262 HDLRHTYGSHLAMRGIPLKVIQELIGHATIEMTNRYAHLS 301 >gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] Length = 482 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+ A+ L + G L +I+ LGHS + T+ Y +++ + + D Sbjct: 422 HTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAHISGSKTKDASDH 471 >gi|152965657|ref|YP_001361441.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] gi|151360174|gb|ABS03177.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] Length = 402 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 S T H +RHS A+ L++ G L IQ+ LGH +++TT Sbjct: 331 SPTPHDIRHSHASWLIAQGVVLPVIQARLGHEKITTT 367 >gi|315922088|ref|ZP_07918328.1| integrase [Bacteroides sp. D2] gi|313695963|gb|EFS32798.1| integrase [Bacteroides sp. D2] Length = 314 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|298484512|ref|ZP_07002659.1| integrase [Bacteroides sp. D22] gi|298269334|gb|EFI10948.1| integrase [Bacteroides sp. D22] Length = 423 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H R++FA+ + LS G + S+ +LGH + TTQ Y +N++++ Sbjct: 362 HMARYTFASQICLSQGVPIESVSRMLGHKHIETTQRYARLNNEKI 406 >gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether] gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether] Length = 313 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 258 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 298 >gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 327 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH++AT LL + +Q +LGH+ +STT IY++V Sbjct: 262 HALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 301 >gi|329964312|ref|ZP_08301393.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328525361|gb|EGF52409.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 410 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA+ + L+N L ++ +LGHS TQ Y V Sbjct: 350 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 391 >gi|324323830|gb|ADY24874.1| integrase-recombinase protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|324323973|gb|ADY25016.1| integrase-recombinase protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 280 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 27/38 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH LRH++ L+++G D+ ++ ++GH+ ++TT+ Y Sbjct: 226 AHMLRHTYGRELVASGIDIATVAELMGHNDVNTTKRYA 263 >gi|242314481|ref|ZP_04813497.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106b] gi|254194535|ref|ZP_04900966.1| integrase [Burkholderia pseudomallei S13] gi|169651285|gb|EDS83978.1| integrase [Burkholderia pseudomallei S13] gi|242137720|gb|EES24122.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106b] Length = 247 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246 >gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 390 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+ + L +I +LGH + TT Y +++ + E ++ S+ Q Sbjct: 328 HDLRHSFASTAIMENVPLSTIGKLLGHKLVETTAKYAHLSDDVIGEAAERISGSLAQ 384 >gi|332994822|gb|AEF04877.1| phage integrase family site-specific recombinase [Alteromonas sp. SN2] Length = 305 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LR +F T LL DL +++ + GH+ ++TT IY + K M Sbjct: 242 VSPHDLRRTFITRLLEQNVDLNTVRQMAGHADIATTIIYDKRHEKVM 288 >gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 286 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H +RH+ ATH L NG L Q LGHS L+TT Y ++ Sbjct: 229 VSPHWIRHTGATHQLINGSPLHLQQQELGHSGLNTTSKYLHI 270 >gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1] gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1] Length = 308 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|299146568|ref|ZP_07039636.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23] gi|298517059|gb|EFI40940.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_23] Length = 239 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 175 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213 >gi|256957171|ref|ZP_05561342.1| integrase/recombinase [Enterococcus faecalis DS5] gi|256947667|gb|EEU64299.1| integrase/recombinase [Enterococcus faecalis DS5] Length = 290 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LR FAT+LL G + I LGH+ L TT Y ++S Sbjct: 239 HGLRRGFATNLLKKGASVPLISKALGHADLETTSRYLYLDS 279 >gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1] gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1] gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1] gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1] gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1] gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1] Length = 308 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513] gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513] gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513] Length = 308 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo] gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo] Length = 313 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 258 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 298 >gi|225028560|ref|ZP_03717752.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353] gi|224954126|gb|EEG35335.1| hypothetical protein EUBHAL_02839 [Eubacterium hallii DSM 3353] Length = 286 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA D+ + ILGHS ++TT+IYT Sbjct: 229 HNLRHLFAYTYYKAEKDIAHLADILGHSSINTTRIYT 265 >gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato K40] gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] Length = 318 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 266 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 301 >gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855] gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855] Length = 387 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R +F T + G D+R+IQSI+ H ++TT Y V Sbjct: 329 TFHSYRRTFTTLQGAAGTDVRTIQSIMAHKSITTTMRYMKV 369 >gi|167847818|ref|ZP_02473326.1| putative bacteriophage integrase [Burkholderia pseudomallei B7210] Length = 235 Score = 35.4 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234 >gi|333023266|ref|ZP_08451330.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071] gi|332743118|gb|EGJ73559.1| hypothetical protein STTU_0770 [Streptomyces sp. Tu6071] Length = 392 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 23/35 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH++A+ L+ G ++ +Q LGHS + T Sbjct: 298 TLHTLRHTYASLLIKEGESVKVVQKRLGHSSAAIT 332 >gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7] gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR 48 H LRH +A+ + G D++++ ILGHS + T ++Y + N +R Sbjct: 306 HALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFER 349 >gi|237795336|ref|YP_002862888.1| integrase [Clostridium botulinum Ba4 str. 657] gi|229261893|gb|ACQ52926.1| integrase [Clostridium botulinum Ba4 str. 657] Length = 657 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LRH+ A + G + IQ ILGH+ L T Y V+ + E + T Sbjct: 471 HSLRHTRAKEYVEQGMGISIIQQILGHTSLQMTVHYATVSENALYEKWKAT 521 >gi|255281627|ref|ZP_05346182.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255267694|gb|EET60899.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 413 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + H LRH+F T +++ IQSI+ H+ + TT IY V + +E Sbjct: 353 SCHHLRHTFCTRFCEQETNIKVIQSIMRHANIETTMDIYAEVTDMKKVE 401 >gi|187779247|ref|ZP_02995720.1| hypothetical protein CLOSPO_02842 [Clostridium sporogenes ATCC 15579] gi|187772872|gb|EDU36674.1| hypothetical protein CLOSPO_02842 [Clostridium sporogenes ATCC 15579] Length = 49 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 23/28 (82%) Query: 22 DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 D+RS+Q ILGH ++TT+IYT+++ ++ Sbjct: 8 DIRSLQQILGHESVATTEIYTHIDEHQL 35 >gi|187922254|ref|YP_001893896.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713448|gb|ACD14672.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 333 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY--TNVNSKRM-MEIYDQ-THPSIT 61 HT RH+ +++ G D+ I++ GH L TT Y N+ +KR+ +E D+ T P Sbjct: 258 HTFRHTAGVQMIAAGVDVTVIRNWFGHVSLDTTNHYARANIETKRLALEQVDRSTRPGSP 317 Query: 62 QKDKKN 67 + ++N Sbjct: 318 PRWRRN 323 >gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 406 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 385 >gi|329728699|gb|EGG65127.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU144] Length = 306 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 120 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 158 >gi|293372855|ref|ZP_06619229.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632144|gb|EFF50748.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 252 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 188 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 226 >gi|291563740|emb|CBL42556.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 425 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GH+ + T Y Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 384 >gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] Length = 406 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 385 >gi|210635496|ref|ZP_03298577.1| hypothetical protein COLSTE_02516 [Collinsella stercoris DSM 13279] gi|210158351|gb|EEA89322.1| hypothetical protein COLSTE_02516 [Collinsella stercoris DSM 13279] Length = 121 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +H R + AT + G + +Q +LGHS++ TT Y V+ + Sbjct: 68 SHKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQQ 110 >gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37] gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37] Length = 384 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+ +++G L I +LGH+++ TT Y ++ ++ + D ++ Q Sbjct: 325 HDLRHTFASTAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAVAQNLRQ 381 >gi|331697264|ref|YP_004333503.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951953|gb|AEA25650.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 331 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+ T L G L ++Q+ GH + +T++Y ++ + +++ Y Sbjct: 259 TCHQLRHTCLTRLREAGMALEAVQAQAGHRSIESTRVYLHLANAWLVQQY 308 >gi|319443131|ref|ZP_07992287.1| hypothetical protein CvarD4_15356 [Corynebacterium variabile DSM 44702] Length = 356 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH +A+ L++ G +Q+ +GH++ STT IYT++ K Sbjct: 273 HDLRHFYASALIAAGSPASEVQAAMGHAKASTTLDIYTHLWPK 315 >gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13] gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13] gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653] gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13] gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653] Length = 308 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 253 VPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 293 >gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 283 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + T H LRH+F L+ G L + + GH+ L+TT YT Sbjct: 225 VEVTPHKLRHTFCKMLVDAGESLDRVAVLAGHANLNTTARYT 266 >gi|325860240|ref|ZP_08173365.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482327|gb|EGC85335.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 143 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 23/35 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 H RH+F T LS G + SI ++GH+ +++TQI Sbjct: 109 HMARHTFGTFALSAGIPIESIAKMMGHASIASTQI 143 >gi|313158930|gb|EFR58309.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 439 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + HT R SFATHL + L +I LGH +++TT Y Sbjct: 377 STHTARRSFATHLQRSKVPLTAISKALGHKKVTTTMRY 414 >gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM 13479] gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM 13479] Length = 424 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H RH++A+ L G D++ Q +LGH + TT Sbjct: 352 TPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTT 386 >gi|24375372|ref|NP_719415.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24350199|gb|AAN56859.1|AE015821_4 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 310 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + + H LR +F T LL D+ +++ + GH+ +STT IY M E Sbjct: 240 VGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIYDKRGDAFMRE 290 >gi|99080617|ref|YP_612771.1| phage integrase [Ruegeria sp. TM1040] gi|99036897|gb|ABF63509.1| phage integrase [Ruegeria sp. TM1040] Length = 334 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HT+RHS A ++SNG L + LGHS ++ T Sbjct: 273 TLHTIRHSSAVAMVSNGVPLEKVAQYLGHSNVAIT 307 >gi|296393307|ref|YP_003658191.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180454|gb|ADG97360.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 370 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+ A+ +SNG ++ ++ +LGH T ++Y ++ + + + ++T++ Sbjct: 301 TPHDLRHTAASIAVSNGANILALARMLGHDPAMTLKVYADLFDADLDAVAEAVSAAMTRE 360 >gi|288923783|ref|ZP_06417873.1| integrase family protein [Frankia sp. EUN1f] gi|288344857|gb|EFC79296.1| integrase family protein [Frankia sp. EUN1f] Length = 498 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 22/34 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 H LRH AT LL+ G D++ + +LGH+ + T+ Sbjct: 432 HDLRHGAATMLLATGADMKLVADVLGHASANFTR 465 >gi|237715182|ref|ZP_04545663.1| integrase [Bacteroides sp. D1] gi|262408865|ref|ZP_06085410.1| integrase [Bacteroides sp. 2_1_22] gi|294645909|ref|ZP_06723582.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810720|ref|ZP_06769368.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445015|gb|EEO50806.1| integrase [Bacteroides sp. D1] gi|262353076|gb|EEZ02171.1| integrase [Bacteroides sp. 2_1_22] gi|292638750|gb|EFF57095.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442053|gb|EFG10872.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 314 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|91206293|ref|YP_538647.1| site-specific recombinase [Escherichia coli UTI89] gi|256855296|ref|YP_003162540.1| putative site-specific recombinase protein [Escherichia coli] gi|301046646|ref|ZP_07193778.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] gi|91075744|gb|ABE10624.1| site-specific recombinase [Escherichia coli UTI89] gi|256275508|gb|ACU68781.1| putative site-specific recombinase protein [Escherichia coli] gi|281181661|dbj|BAI57990.1| recombinase [Escherichia coli SE15] gi|300301412|gb|EFJ57797.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] gi|307629864|gb|ADN74167.1| putative site-specific recombinase protein [Escherichia coli UM146] gi|315290848|gb|EFU50217.1| site-specific recombinase, phage integrase family [Escherichia coli MS 153-1] gi|323954242|gb|EGB50029.1| phage integrase [Escherichia coli H263] Length = 246 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 349 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH++ T L + G DL ++++++GH TT Y +++ +++ Y Sbjct: 290 HRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARYVHLSIEQLAAEY 337 >gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola str. M6] gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6] Length = 320 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 317 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 265 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 300 >gi|329313062|gb|AEB87475.1| Integrase [Staphylococcus aureus subsp. aureus T0131] Length = 405 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396 >gi|312891622|ref|ZP_07751134.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295904|gb|EFQ73061.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 286 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H H+FAT + LSNG + ++ +LGHS + TTQ Y + Sbjct: 226 TYHIACHTFATTVTLSNGVPIETVSKMLGHSNIKTTQHYAKI 267 >gi|239624491|ref|ZP_04667522.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520877|gb|EEQ60743.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 281 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 21/37 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA DL + ILGHS + TT+IYT Sbjct: 227 HNLRHLFAYTYYGVDKDLVHLADILGHSSVETTRIYT 263 >gi|218264265|ref|ZP_03478130.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii DSM 18315] gi|218222157|gb|EEC94807.1| hypothetical protein PRABACTJOHN_03820 [Parabacteroides johnsonii DSM 18315] Length = 413 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+N L+ + ++LGH+ TQ Y V K + + Sbjct: 354 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDKNLKD 402 >gi|187932650|ref|YP_001885119.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187720803|gb|ACD22024.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 386 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRHS AT LL N ++ IQ LGHS + TT IY +V Sbjct: 327 HDLRHSNATILLKNKISMKVIQERLGHSLMQTTSDIYAHV 366 >gi|38637705|ref|NP_942679.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|38637800|ref|NP_942774.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527043|gb|AAP85793.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527138|gb|AAP85888.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 332 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ A LL G D I LGH + TTQIY Sbjct: 257 TVHRLRHTMAMDLLQAGVDRSVIALWLGHESVETTQIY 294 >gi|325965389|ref|YP_004243294.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471476|gb|ADX75160.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 417 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYT 42 H+LR S+ TH+ + G D + I +GH STT IYT Sbjct: 341 HSLRRSYVTHMQTEHGYDTKFISMQVGHEHTSTTTIYT 378 >gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53] gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53] Length = 356 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42 M H RH+FAT L + G + I+ ++GHS +TT+ IYT Sbjct: 299 MEHLPHDCRHTFATRLSNYGANSTCIKKLIGHSSYATTEKIYT 341 >gi|298531267|ref|ZP_07018667.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508877|gb|EFI32783.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 338 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RHS A ++L G L I++ LGH L +T +Y ++ R E+ Sbjct: 255 VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKREL 302 >gi|172064743|ref|YP_001812393.1| integrase family protein [Burkholderia ambifaria MC40-6] gi|171998228|gb|ACB69144.1| integrase family protein [Burkholderia ambifaria MC40-6] Length = 236 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R +FA+ L++ G L ++Q +LGHS L Y V + M Sbjct: 180 SSHSGRRTFASRLVAQGHSLETVQILLGHSHLDHVAPYLEVPRRDM 225 >gi|85708431|ref|ZP_01039497.1| site-specific integrase/recombinase-like protein [Erythrobacter sp. NAP1] gi|85689965|gb|EAQ29968.1| site-specific integrase/recombinase-like protein [Erythrobacter sp. NAP1] Length = 127 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 25/42 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+ AT L+ +L + +LGH+ + TTQ Y N N + Sbjct: 63 HDLRHTGATRLVRAVPNLEIARQLLGHADIKTTQKYANTNRE 104 >gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] Length = 388 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + H LRH+ + L G ++ +Q LGHS + TT IYT+V K Sbjct: 329 SPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKK 373 >gi|193065402|ref|ZP_03046472.1| w0040 [Escherichia coli E22] gi|192926929|gb|EDV81553.1| w0040 [Escherichia coli E22] Length = 246 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|170745358|ref|YP_001766815.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170658959|gb|ACB28013.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 32/51 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A+ + G+LR++Q +LGH+++ +T Y V+ + + + + T Sbjct: 158 HSLRRTKASLIYKRTGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGT 208 >gi|150401647|ref|YP_001325413.1| phage integrase family protein [Methanococcus aeolicus Nankai-3] gi|150014350|gb|ABR56801.1| phage integrase family protein [Methanococcus aeolicus Nankai-3] Length = 324 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 25/45 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H+LRH LL+ G L + +GH + TT IY + NS++ Sbjct: 264 TLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSRK 308 >gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. syringae 642] gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 324 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 24/42 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RHS A + NGGD S++SILGH+ L T Y + Sbjct: 263 VSPHIWRHSGAILYIMNGGDPFSLKSILGHTTLHMTNHYVQM 304 >gi|282915692|ref|ZP_06323463.1| integrase [Staphylococcus aureus subsp. aureus D139] gi|282320508|gb|EFB50847.1| integrase [Staphylococcus aureus subsp. aureus D139] Length = 348 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 288 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 339 >gi|258453038|ref|ZP_05701031.1| integrase [Staphylococcus aureus A5948] gi|257859248|gb|EEV82103.1| integrase [Staphylococcus aureus A5948] Length = 405 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 345 VTTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396 >gi|297566000|ref|YP_003684972.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296850449|gb|ADH63464.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 385 Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS+ +H+L+NG L + +GH+ + T Sbjct: 324 HDLRHSYGSHMLANGAPLELVSERMGHANANIT 356 >gi|160882251|ref|ZP_02063254.1| hypothetical protein BACOVA_00197 [Bacteroides ovatus ATCC 8483] gi|156112340|gb|EDO14085.1| hypothetical protein BACOVA_00197 [Bacteroides ovatus ATCC 8483] Length = 239 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 175 VTSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 213 >gi|323964481|gb|EGB59957.1| phage integrase [Escherichia coli M863] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] Length = 345 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+ A+ L NG L I+ +LGH ++ TQ Y ++ + ++ +I Q+ K Sbjct: 280 HDLRHTCASILAMNGASLLEIKQVLGHKTIAMTQRYAHLCVSHQQMLTERVLGNIGQRTK 339 >gi|323191602|gb|EFZ76860.1| resolvase [Escherichia coli RN587/1] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|312889681|ref|ZP_07749229.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311297801|gb|EFQ74922.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 413 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 20/33 (60%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 RH+F T + NG + IQ LGH LSTTQ Y Sbjct: 361 RHTFTTTAIRNGAKMELIQESLGHHSLSTTQNY 393 >gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7] gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+ RH FA+ L++ G D+ ++ LGHS +STT Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTT 361 >gi|290968678|ref|ZP_06560216.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] gi|290781331|gb|EFD93921.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] Length = 357 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H RH++AT+LL+ G +LR++ S+LG + + + Y Sbjct: 300 SPHDFRHTYATNLLARGVNLRTVASLLGDTITTVEKTY 337 >gi|256026205|ref|ZP_05440070.1| integrase [Escherichia sp. 4_1_40B] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|255284546|ref|ZP_05349101.1| phage integrase [Bryantella formatexigens DSM 14469] gi|255264913|gb|EET58118.1| phage integrase [Bryantella formatexigens DSM 14469] Length = 313 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 T H RH+FAT + G + +++ILGHS L+ T +Y++V Sbjct: 256 TPHVFRHTFATRAIEAGMQPQVLKTILGHSSLAMTMDLYSHV 297 >gi|298528846|ref|ZP_07016249.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529859|ref|ZP_07017261.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529886|ref|ZP_07017288.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509233|gb|EFI33137.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509260|gb|EFI33164.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510282|gb|EFI34185.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 338 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RHS A ++L G L I++ LGH L +T +Y ++ R E+ Sbjct: 255 VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKREL 302 >gi|197104955|ref|YP_002130332.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1] gi|196478375|gb|ACG77903.1| Site-specific recombinase XerD [Phenylobacterium zucineum HLK1] Length = 440 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 23/68 (33%) Query: 4 TAHTLRHSFATHLLSN-----------------------GGDLRSIQSILGHSRLSTTQI 40 + H LRH+FA H+L+ G L+ +Q +LGH+ L+TT I Sbjct: 352 SPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRLLGHASLATTYI 411 Query: 41 YTNVNSKR 48 Y + + R Sbjct: 412 YLDHIASR 419 >gi|154267925|gb|ABS72060.1| integrase-like protein [Ruminococcus gauvreauii] Length = 278 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA + +L + ILGHSR+ TT+IY Sbjct: 224 HNLRHLFARSFYAIEKNLAHLADILGHSRIETTRIY 259 >gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555] gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016] gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555] gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 416 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT L++ G D+ ++ LGH+R S TT IY++ K +E D+ Sbjct: 350 HGLRHTSATLLINQGVDITTVSKRLGHARTSTTTDIYSHSLQKADVEAADK 400 >gi|56130793|ref|YP_145696.1| putative integrase/recombinase protein [Ralstonia metallidurans CH34] gi|94152488|ref|YP_581895.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|56068783|emb|CAI11345.1| putative integrase/recombinase protein [Cupriavidus metallidurans CH34] gi|93358858|gb|ABF12945.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 716 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 + + H +RH+ +H L+ G L +++ GH+ L TT Y R Sbjct: 656 AASTHWMRHTHISHALAAGAPLEAVKQNAGHASLDTTTRYVTTEDAR 702 >gi|312621007|ref|YP_003993735.1| site-specific recombinase, phage integrase family protein [Photobacterium damselae subsp. damselae] gi|311872728|emb|CBX86822.1| site-specific recombinase, phage integrase family protein [Photobacterium damselae subsp. damselae] Length = 373 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH++AT L NG L ++ +LGH TT Y ++ S M Sbjct: 313 HDLRHTYATRALENGEHLLNVGKLLGHELPETTLRYAHLASAPM 356 >gi|301311826|ref|ZP_07217748.1| integrase [Bacteroides sp. 20_3] gi|300829928|gb|EFK60576.1| integrase [Bacteroides sp. 20_3] Length = 405 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA+ + L+N L ++ +LGHS TQ Y V Sbjct: 346 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 387 >gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 320 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM 10507] gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM 10507] Length = 279 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA + D+ + +LGHS ++TT+IY Sbjct: 225 HNLRHLFARCFYAADKDIAKLADVLGHSSINTTRIY 260 >gi|160934533|ref|ZP_02081919.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753] gi|156865986|gb|EDO59358.1| hypothetical protein CLOLEP_03405 [Clostridium leptum DSM 753] Length = 412 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 23/34 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 HTLRH+FAT D+ ++ ILGH++ +TT+ Sbjct: 356 HTLRHTFATRAFELAFDIPTLAEILGHAQKTTTE 389 >gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37] gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37] Length = 337 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ A+ L NG L I +LGH ++ TQ Y+++ + ++ D+ I Sbjct: 280 HDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSHLCIEHKAKLTDRVFGGI 334 >gi|66395166|ref|YP_239446.1| ORF002 [Staphylococcus phage PT1028] gi|62635520|gb|AAX90631.1| ORF002 [Staphylococcus phage PT1028] Length = 404 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 346 TTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396 >gi|50914588|ref|YP_060560.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] gi|50903662|gb|AAT87377.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] Length = 248 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T+H RH+ + L N L+SI +GH+ TT QIYT+V K Sbjct: 192 TSHIFRHTLISRLAENNVPLKSIMERVGHADAKTTAQIYTHVTKK 236 >gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 405 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA+ + L+N L ++ +LGHS TQ Y V Sbjct: 346 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 387 >gi|282922343|ref|ZP_06330034.1| integrase [Staphylococcus aureus A9765] gi|282593469|gb|EFB98464.1| integrase [Staphylococcus aureus A9765] Length = 404 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 346 TTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396 >gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104] gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104] gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] Length = 376 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 + H LRHS A HLL +G +++ + LGH ++ T +Y +V SK+M Sbjct: 319 SPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHV-SKKM 364 >gi|298528030|ref|ZP_07015434.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511682|gb|EFI35584.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 338 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RHS A ++L G L I++ LGH L +T +Y ++ R E+ Sbjct: 255 VHCFRHSCAINMLGTGFSLTDIKNHLGHENLQSTMVYLKLSLNRKREL 302 >gi|210610558|ref|ZP_03288484.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787] gi|210152417|gb|EEA83423.1| hypothetical protein CLONEX_00674 [Clostridium nexile DSM 1787] Length = 425 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GH+ + T Y Sbjct: 347 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 384 >gi|166030826|ref|ZP_02233655.1| hypothetical protein DORFOR_00500 [Dorea formicigenerans ATCC 27755] gi|166029408|gb|EDR48165.1| hypothetical protein DORFOR_00500 [Dorea formicigenerans ATCC 27755] Length = 287 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 231 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 273 >gi|319425166|gb|ADV53240.1| integrase family protein [Shewanella putrefaciens 200] Length = 311 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LR +F T LL D+ +++ + GH+ +STT IY Sbjct: 242 VSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280 >gi|219669966|ref|YP_002460401.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219540226|gb|ACL21965.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 +AH LRH+ A+ L+ G + SI LGHS +STTQ Sbjct: 248 SAHCLRHTHASLLIFAGVSIASIAKRLGHSSISTTQ 283 >gi|317485379|ref|ZP_07944258.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316923338|gb|EFV44545.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 389 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HTLRH+F + L S L +I ++GH+ L +TQ Y ++ Sbjct: 329 HTLRHTFCSWLASQNVPLYTIGKLVGHTSLRSTQRYAKLS 368 >gi|298387542|ref|ZP_06997094.1| integrase [Bacteroides sp. 1_1_14] gi|298259749|gb|EFI02621.1| integrase [Bacteroides sp. 1_1_14] Length = 315 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 253 VTSYTLRHSWATIAKYRGVPIEMISESLGHKSIKTTQIY 291 >gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] Length = 360 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H RH+FA+ L +N D +I I+GHS TT +Y + KR+ ++ D+ Sbjct: 308 HDTRHTFASLLSNNVADKDAIIKIIGHSNYKTTSDVYIHKEIKRLKKVVDE 358 >gi|172055243|ref|YP_001806570.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701524|gb|ACB54504.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 211 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H LRH+ L+++G D+R IQ LGH + T YT +++ Sbjct: 162 HMLRHACGYKLVNDGHDIRMIQQYLGHKNIQHTVRYTTLSA 202 >gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 333 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H R + AT+LL++G ++ +Q ILGH+ TQ Y ++ + + Y + Sbjct: 281 HKFRRTQATYLLNSGMTIQGVQKILGHTSPDVTQRYAQLSQENLKNEYKR 330 >gi|149930796|ref|YP_001294704.1| w0040 [Escherichia coli] gi|260718977|ref|YP_003225118.1| putative recombinase [Escherichia coli O103:H2 str. 12009] gi|291285926|ref|YP_003502743.1| w0040 [Escherichia coli O55:H7 str. CB9615] gi|37695784|gb|AAR00446.1|AF401292_48 w0040 [Escherichia coli] gi|257762488|dbj|BAI33984.1| putative recombinase [Escherichia coli O103:H2 str. 12009] gi|290765799|gb|ADD59759.1| w0040 [Escherichia coli O55:H7 str. CB9615] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|292905278|ref|YP_003541149.1| phage integrase [Anabaena variabilis ATCC 29413] gi|75705016|gb|ABA24691.1| Phage integrase [Anabaena variabilis ATCC 29413] Length = 309 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H R +FA LL G D+ ++Q ++GH+ +TT Y Sbjct: 255 TPHDFRRTFAGDLLDAGVDIVTVQKLMGHADPATTAKY 292 >gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] Length = 385 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H LRH+ T L+ +G L+ +Q +GH S ++Y ++N ++ E+ Sbjct: 324 TVHGLRHTHCTLLIESGASLKEVQDRMGHEDESMVLKVYLHINEEKKTEV 373 >gi|293420931|ref|ZP_06661365.1| site-specific recombinase [Escherichia coli B088] gi|291324801|gb|EFE64217.1| site-specific recombinase [Escherichia coli B088] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|221218507|ref|YP_002527465.1| putative site-specific recombinase [Escherichia coli] gi|253800994|ref|YP_003033995.1| site-specific recombinase [Escherichia coli Vir68] gi|310286471|ref|YP_003937732.1| site-specific recombinase [Escherichia coli] gi|215252835|gb|ACJ63494.1| putative site-specific recombinase [Escherichia coli] gi|253721171|gb|ACT33480.1| site-specific recombinase [Escherichia coli Vir68] gi|308826800|emb|CBX36068.1| site-specific recombinase [Escherichia coli] gi|323184033|gb|EFZ69412.1| resolvase [Escherichia coli 1357] gi|324115871|gb|EGC09800.1| phage integrase [Escherichia coli E1167] gi|332346631|gb|AEE59962.1| site-specific recombinase [Escherichia coli UMNK88] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|212691117|ref|ZP_03299245.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855] gi|212666349|gb|EEB26921.1| hypothetical protein BACDOR_00607 [Bacteroides dorei DSM 17855] Length = 415 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH F L+S + SI ++GHS ++TTQ Y + ++ + D+ Sbjct: 349 HQARHGFGVLLISESVSIESIAKMMGHSNITTTQGYARITEDKISKEMDK 398 >gi|149916536|ref|ZP_01905052.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809575|gb|EDM69432.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R +F T L G ++R + + GH +STTQ Y +VN ++ Sbjct: 135 ASSHSGRRTFITRLAEQGVNVRLLAELAGHRHISTTQRYIDVNPAQL 181 >gi|149916530|ref|ZP_01905046.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809569|gb|EDM69426.1| Integrase [Roseobacter sp. AzwK-3b] Length = 188 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + ++H+ R +F T L G ++R + + GH +STTQ Y +VN ++ Sbjct: 134 NASSHSGRRTFITRLAEQGVNVRLLAELAGHRHISTTQRYIDVNPAQL 181 >gi|29347136|ref|NP_810639.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29339035|gb|AAO76833.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 316 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287 >gi|9507745|ref|NP_061411.1| site-specific recombinase [Plasmid F] gi|209921886|ref|YP_002295965.1| integrase [Escherichia coli SE11] gi|291289394|ref|YP_003517726.1| resolvase [Klebsiella pneumoniae] gi|298155852|ref|YP_003717678.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75] gi|331685923|ref|ZP_08386500.1| putative site-specific recombinase [Escherichia coli H299] gi|9910720|sp|P56979|INTM_ECOLI RecName: Full=Probable site-specific recombinase gi|8918855|dbj|BAA97902.1| int [Plasmid F] gi|209915379|dbj|BAG80450.1| integrase [Escherichia coli SE11] gi|290792355|gb|ADD63680.1| resolvase [Klebsiella pneumoniae] gi|297374449|emb|CBL93511.1| putative resolvase (protein D) [Escherichia coli ETEC 1392/75] gi|331076876|gb|EGI48097.1| putative site-specific recombinase [Escherichia coli H299] Length = 246 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|126175754|ref|YP_001051903.1| phage integrase family protein [Shewanella baltica OS155] gi|125998959|gb|ABN63034.1| phage integrase family protein [Shewanella baltica OS155] Length = 311 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LR +F T LL D+ +++ + GH+ +STT IY Sbjct: 242 VSPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280 >gi|323359479|ref|YP_004225875.1| integrase [Microbacterium testaceum StLB037] gi|323275850|dbj|BAJ75995.1| integrase [Microbacterium testaceum StLB037] Length = 242 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH +A+ L++ G D+ ++Q LGH++ +TT Sbjct: 168 HDLRHFYASGLIAAGCDVVTVQRALGHAKATTT 200 >gi|301023390|ref|ZP_07187177.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299880873|gb|EFI89084.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 246 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|227484768|ref|ZP_03915084.1| integrase [Anaerococcus lactolyticus ATCC 51172] gi|297587374|ref|ZP_06946019.1| transposase [Finegoldia magna ATCC 53516] gi|227237250|gb|EEI87265.1| integrase [Anaerococcus lactolyticus ATCC 51172] gi|297575355|gb|EFH94074.1| transposase [Finegoldia magna ATCC 53516] Length = 405 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|225573236|ref|ZP_03781991.1| hypothetical protein RUMHYD_01427 [Blautia hydrogenotrophica DSM 10507] gi|225039368|gb|EEG49614.1| hypothetical protein RUMHYD_01427 [Blautia hydrogenotrophica DSM 10507] Length = 101 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH+F +++ +G + +++Q I+GHS + T YT+V Sbjct: 45 VTPHVCRHTFCSNMAKSGMNPKTLQKIMGHSDIGVTLNTYTHV 87 >gi|218692796|ref|YP_002405908.1| putative site-specific recombinase [Escherichia coli UMN026] gi|293404656|ref|ZP_06648649.1| ResD protein [Escherichia coli FVEC1412] gi|298378880|ref|ZP_06988762.1| site-specific recombinase [Escherichia coli FVEC1302] gi|300897150|ref|ZP_07115606.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|218349959|emb|CAQ87369.1| putative site-specific recombinase [Escherichia coli UMN026] gi|291428368|gb|EFF01394.1| ResD protein [Escherichia coli FVEC1412] gi|298280489|gb|EFI21992.1| site-specific recombinase [Escherichia coli FVEC1302] gi|300359059|gb|EFJ74929.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 246 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|77465807|ref|YP_355310.1| integrase [Rhodobacter sphaeroides 2.4.1] gi|77390225|gb|ABA81409.1| possible integrase [Rhodobacter sphaeroides 2.4.1] Length = 332 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 + T HTLRH+ A H+ G + I LGHS + T+ +Y + + + + D Sbjct: 267 LDVTLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321 >gi|58383277|ref|YP_194847.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|84060868|ref|YP_444070.1| site-specific integrase [Escherichia coli] gi|194446941|ref|YP_002038975.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|218534478|ref|YP_002401008.1| putative site-specific recombinase [Escherichia coli S88] gi|237702615|ref|ZP_04533096.1| site-specific tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|331660326|ref|ZP_08361261.1| putative site-specific recombinase [Escherichia coli TA206] gi|37962756|gb|AAR05703.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62550883|emb|CAH64806.1| site-specific tyrosine recombinase [uncultured bacterium] gi|76781959|gb|ABA54752.1| site-specific integrase [Escherichia coli] gi|194358693|gb|ACF57136.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|218349682|emb|CAQ87074.1| putative site-specific recombinase [Escherichia coli S88] gi|226903201|gb|EEH89460.1| site-specific tyrosine recombinase [Escherichia sp. 3_2_53FAA] gi|301130388|gb|ADK62189.1| site-specific recombinase protein [Salmonella enterica subsp. enterica serovar Kentucky] gi|301130517|gb|ADK62317.1| site-specific recombinase protein [Salmonella enterica subsp. enterica serovar Kentucky] gi|312914839|dbj|BAJ38813.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|315286826|gb|EFU46245.1| site-specific recombinase, phage integrase family [Escherichia coli MS 110-3] gi|323948634|gb|EGB44544.1| phage integrase [Escherichia coli H252] gi|327536720|gb|AEA95552.1| RepFIB associated resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|331052593|gb|EGI24629.1| putative site-specific recombinase [Escherichia coli TA206] Length = 246 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|255009706|ref|ZP_05281832.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 406 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 344 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 385 >gi|218511150|ref|YP_002415608.1| site-specific recombinase [Escherichia coli 55989] gi|218359251|emb|CAU95747.1| site-specific recombinase [Escherichia coli 55989] Length = 246 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] Length = 392 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHS+A+ L++ G L +Q LGHS T Y +++ + + + IT+ Sbjct: 328 HDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITE 384 >gi|37525910|ref|NP_929254.1| hypothetical protein plu1991 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785339|emb|CAE14284.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 206 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 25/48 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGHS + T YT N++R ++ Sbjct: 135 HMLRHACGFALADRGIDTRLIQDYLGHSNIRHTVRYTASNAERFHGVW 182 >gi|255021792|ref|ZP_05293815.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756] gi|254968768|gb|EET26307.1| fimbriae recombinase [Acidithiobacillus caldus ATCC 51756] Length = 250 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 23/48 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T YT N +R ++ Sbjct: 202 HMLRHACGYALADQGTDTRLIQDYLGHRNIQHTVRYTATNVRRFDRLW 249 >gi|238927807|ref|ZP_04659567.1| prophage LambdaCh01, site-specific recombinase phage integrase family protein [Selenomonas flueggei ATCC 43531] gi|238884354|gb|EEQ47992.1| prophage LambdaCh01, site-specific recombinase phage integrase family protein [Selenomonas flueggei ATCC 43531] Length = 377 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51 H LRHS A+ +L +G +++ ILGHS ++ T +YT+V K E Sbjct: 316 HDLRHSCASLMLQSGVAMKTASEILGHSSIAITADLYTHVMQKTKEE 362 >gi|212702760|ref|ZP_03310888.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098] gi|212673817|gb|EEB34300.1| hypothetical protein DESPIG_00788 [Desulfovibrio piger ATCC 29098] Length = 394 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH A + GG L Q+++GHSR +TT IY Sbjct: 305 HALRHKAAAITFTAGG-LAVAQTLMGHSRATTTDIY 339 >gi|11967381|gb|AAG42074.1|AF288684_1 integrase-like protein [Enterococcus faecium] Length = 278 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA + +L + ILGHSR+ TT+IY Sbjct: 224 HNLRHLFARSFYAIEKNLAHLADILGHSRIETTRIY 259 >gi|94985220|ref|YP_604584.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94555501|gb|ABF45415.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 369 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 25/41 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLR + THL DL + +LGH+ ++T+ IY +++ Sbjct: 289 HTLRRTAGTHLYRATRDLHVVADLLGHASVTTSAIYAKMDA 329 >gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1] gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1] Length = 393 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHSFA+ L G DL I +LGH L +T Y ++ + Sbjct: 326 HDLRHSFASDALELGEDLVMIGKLLGHRDLKSTARYAHLKKE 367 >gi|329732225|gb|EGG68575.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus 21193] Length = 405 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRMM 50 T HTLRH+ + L G +L++IQ +GHS TT +IYT+V +K MM Sbjct: 346 TTHTLRHTHISTLAQLGINLKAIQDRVGHSDYKTTLEIYTHVTDQMAKDMM 396 >gi|331700415|ref|YP_004397374.1| integrase family protein [Lactobacillus buchneri NRRL B-30929] gi|329127758|gb|AEB72311.1| integrase family protein [Lactobacillus buchneri NRRL B-30929] Length = 383 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H RH+ A+ L + G ++ +Q+ LGH TT IYT+V K+ Sbjct: 324 TVHGFRHTSASMLFAAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQ 369 >gi|319950767|ref|ZP_08024657.1| phage integrase family protein [Dietzia cinnamea P4] gi|319435568|gb|EFV90798.1| phage integrase family protein [Dietzia cinnamea P4] Length = 655 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+H LRH++AT L++ G L+++ ++LGH + Y + + E Y++ Sbjct: 477 TSHQLRHTYATALVNAGVSLQALMALLGHVSAEMSLRYGRLFDTTIREEYER 528 >gi|315637375|ref|ZP_07892590.1| phage integrase [Arcobacter butzleri JV22] gi|315478349|gb|EFU69067.1| phage integrase [Arcobacter butzleri JV22] Length = 209 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRH+FA+HL NG + +IQ ++ H + T Y + Sbjct: 157 HSLRHTFASHLAINGTPIFTIQKLMNHKDIRMTLRYAKL 195 >gi|299529325|ref|ZP_07042764.1| integrase family protein [Comamonas testosteroni S44] gi|298722703|gb|EFI63621.1| integrase family protein [Comamonas testosteroni S44] Length = 337 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHS A+ +++ G DL ++ +LGH +T+ Y+++ ++ + Sbjct: 274 HDLRHSTASEMINAGVDLYTVGGVLGHKSAVSTKRYSHLATQTL 317 >gi|254502117|ref|ZP_05114268.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|254505339|ref|ZP_05117487.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222436183|gb|EEE42865.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222438188|gb|EEE44867.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 373 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYD 54 + H+LR +FAT + G L IQ +LGHS + + Y +++ SKR + + D Sbjct: 318 SIHSLRDTFATRVRRKGMGLDGIQKLLGHSDSAMSAKYADIDTFDVSKRAVSLLD 372 >gi|167721750|ref|ZP_02404986.1| putative bacteriophage integrase [Burkholderia pseudomallei DM98] Length = 235 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234 >gi|170783504|ref|YP_001741997.1| putative site-specific recombinase [Arthrobacter sp. AK-1] gi|325961560|ref|YP_004239466.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|325963305|ref|YP_004241211.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|150034991|gb|ABR67002.1| putative site-specific recombinase [Arthrobacter sp. AK-1] gi|323467647|gb|ADX71332.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323469392|gb|ADX73077.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 409 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYT 42 H+LR S+ TH+ + G D + I +GH STT IYT Sbjct: 333 HSLRRSYVTHMQTEHGYDTKFISMQVGHEHTSTTTIYT 370 >gi|191174384|ref|ZP_03035888.1| site-specific recombinase [Escherichia coli F11] gi|190905317|gb|EDV64952.1| site-specific recombinase [Escherichia coli F11] Length = 213 Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182 >gi|323159040|gb|EFZ45041.1| resolvase [Escherichia coli E128010] Length = 246 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRV 215 >gi|308174996|ref|YP_003921701.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7] gi|307607860|emb|CBI44231.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens DSM 7] Length = 385 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + H LRHS A HL+ DL+ + LGHS + T Sbjct: 326 SPHALRHSHAVHLIEAKADLKFVSERLGHSSIKIT 360 >gi|290959673|ref|YP_003490855.1| hypothetical protein SCAB_52771 [Streptomyces scabiei 87.22] gi|260649199|emb|CBG72313.1| putative phage integrase (fragment) [Streptomyces scabiei 87.22] Length = 145 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTH 57 + T H LRH+ A+ +++G D+ +Q++LGH S T Y ++ R+ E+ + H Sbjct: 52 LKVTPHKLRHTAASLAIASGADVNVVQTMLGHKSATLTLDTYGHLFPDRLDEVSKKMH 109 >gi|302878684|ref|YP_003847248.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581473|gb|ADL55484.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 217 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 24/49 (48%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R+IQ LGH + T YT ++S R + Sbjct: 167 PHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDRFKNFW 215 >gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 330 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 H LR++FA L +GG + + +LGHS + T Q Y ++ + + Y Q P Sbjct: 267 HQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQAYLDLTDTDIRKNYQQFSP 320 >gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 423 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ A+ LL+ G D R+I LGHS ++ T Y +V + +Q ++ +D Sbjct: 353 HDLRHTCASLLLAQGVDARTIMETLGHSTITMTLDTYAHVMGSTLRAAAEQMDDALGLED 412 >gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] Length = 387 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT G D + +Q LGH ++ T +YT+V + D+ Sbjct: 328 HALRHTFATRCFEAGIDAKVVQGFLGHYSIAITLDLYTHVTDDKAKSEMDK 378 >gi|145321085|gb|ABP63570.1| integrase [Pseudomonas putida] Length = 297 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 15/23 (65%), Positives = 19/23 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSI 26 T HTLRHSFAT LL +G D+R++ Sbjct: 275 TPHTLRHSFATALLRSGYDIRTV 297 >gi|307701803|ref|ZP_07638817.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307613061|gb|EFN92316.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 92 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RH+ AT LL+ G + I++I+GHS + T Y +VN Sbjct: 34 HEARHTTATLLLAAGVEPEIIKAIMGHSDVVTQAAYQHVN 73 >gi|254241189|ref|ZP_04934511.1| site-specific recombinase, phage integrase family [Pseudomonas aeruginosa 2192] gi|126194567|gb|EAZ58630.1| site-specific recombinase, phage integrase family [Pseudomonas aeruginosa 2192] Length = 206 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 154 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 204 >gi|50057029|emb|CAF32668.1| hypothetical protein [Oenoccocus phage fOgPSU1] Length = 348 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LRHS A++LLS G ++ + LGHS ++ T+ Sbjct: 287 VTFHALRHSHASYLLSKGVSIQYVSERLGHSSIAITE 323 >gi|331085637|ref|ZP_08334720.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406560|gb|EGG86065.1| hypothetical protein HMPREF0987_01023 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 399 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385 >gi|260170926|ref|ZP_05757338.1| integrase [Bacteroides sp. D2] gi|315919256|ref|ZP_07915496.1| integrase [Bacteroides sp. D2] gi|313693131|gb|EFS29966.1| integrase [Bacteroides sp. D2] Length = 317 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53 T++T RHS+AT G + I LGH + TTQIY T VN K + + Sbjct: 252 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYVR 311 Query: 54 D 54 D Sbjct: 312 D 312 >gi|253571873|ref|ZP_04849278.1| integrase [Bacteroides sp. 1_1_6] gi|251838470|gb|EES66556.1| integrase [Bacteroides sp. 1_1_6] Length = 316 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287 >gi|225420324|ref|ZP_03762627.1| hypothetical protein CLOSTASPAR_06668 [Clostridium asparagiforme DSM 15981] gi|225041010|gb|EEG51256.1| hypothetical protein CLOSTASPAR_06668 [Clostridium asparagiforme DSM 15981] Length = 301 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 27/40 (67%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 LRH+FAT + GG+L +++ +LGH S T+ Y ++ ++ Sbjct: 182 LRHTFATSYIMGGGNLETLRLLLGHFDYSVTRKYLHLAAQ 221 >gi|116492513|ref|YP_804248.1| integrase [Pediococcus pentosaceus ATCC 25745] gi|116102663|gb|ABJ67806.1| Integrase [Pediococcus pentosaceus ATCC 25745] Length = 379 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRHS LLS G D+ I LGHS ++TT Sbjct: 306 HSLRHSHVAFLLSQGIDIYPIAQRLGHSDITTT 338 >gi|15645610|ref|NP_207786.1| integrase/recombinase (xerD) [Helicobacter pylori 26695] gi|2314140|gb|AAD08042.1| integrase/recombinase (xerD) [Helicobacter pylori 26695] Length = 355 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|312886963|ref|ZP_07746567.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311300275|gb|EFQ77340.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 411 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L+NG + S+ +LGHS + TQ Y + + ++ Sbjct: 346 TFHIARHTFATTVTLNNGVPMESVSKMLGHSSIRQTQHYAKMQNYKV 392 >gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 408 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA+ + L+N L ++ +LGHS TQ Y V Sbjct: 349 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 390 >gi|302879148|ref|YP_003847712.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581937|gb|ADL55948.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 217 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 24/49 (48%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R+IQ LGH + T YT ++S R + Sbjct: 167 PHMLRHACGYKLAQAGQDTRAIQHYLGHRNIQHTVRYTQLSSDRFKNFW 215 >gi|239905577|ref|YP_002952316.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795441|dbj|BAH74430.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 372 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 22/36 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T + LRH FAT LL G DL ++ ++GHS + T Sbjct: 312 TRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMT 347 >gi|222159805|gb|ACM47280.1| integrase-like protein IntD [Enterococcus avium] Length = 278 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA + +L + ILGHSR+ TT+IY Sbjct: 224 HNLRHLFARSFYAIEKNLAHLADILGHSRIETTRIY 259 >gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii DSM 18315] gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii DSM 18315] Length = 406 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA+ + L+N L ++ +LGHS TQ Y V Sbjct: 346 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 387 >gi|328542282|ref|YP_004302391.1| integrase family protein [polymorphum gilvum SL003B-26A1] gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 376 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHS A++L NG L I ILGH L + Y +++ + Sbjct: 321 HDLRHSTASYLAMNGASLVEIAEILGHRTLQMVRRYAHLSESHV 364 >gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 320 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 25/36 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q+ LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQAWLGHANISTTKIY 303 >gi|303233297|ref|ZP_07319968.1| site-specific recombinase, phage integrase family [Atopobium vaginae PB189-T1-4] gi|302480597|gb|EFL43686.1| site-specific recombinase, phage integrase family [Atopobium vaginae PB189-T1-4] Length = 309 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 22/31 (70%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +RHSFAT L+ G D+ + +LGHS ++TT Sbjct: 260 MRHSFATSCLNAGVDVTKVSKLLGHSNITTT 290 >gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 414 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H +RH FA+ L+ G DL +++ +LGH+ L T Y ++ Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHL 398 >gi|237722267|ref|ZP_04552748.1| integrase [Bacteroides sp. 2_2_4] gi|293373519|ref|ZP_06619871.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|229448077|gb|EEO53868.1| integrase [Bacteroides sp. 2_2_4] gi|292631483|gb|EFF50109.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 317 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53 T++T RHS+AT G + I LGH + TTQIY T VN K + + Sbjct: 252 VTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYVR 311 Query: 54 D 54 D Sbjct: 312 D 312 >gi|239820880|ref|YP_002948065.1| integrase family protein [Variovorax paradoxus S110] gi|239805733|gb|ACS22799.1| integrase family protein [Variovorax paradoxus S110] Length = 207 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 32/51 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + A+ + +LR++Q +LGH++L +T Y + + +E+ +QT Sbjct: 155 HSMRRTKASLVYRRTKNLRAVQLLLGHTKLESTVRYLGIEVEDALEMAEQT 205 >gi|157737940|ref|YP_001490624.1| phage integrase family site specific recombinase [Arcobacter butzleri RM4018] gi|157699794|gb|ABV67954.1| site-specific recombinase, phage integrase family [Arcobacter butzleri RM4018] Length = 386 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRH+FA+HL NG + +I+ ++ H + T Y + Sbjct: 334 HSLRHTFASHLAINGTPIFTIKELMNHKDIEQTMRYAKL 372 >gi|111221184|ref|YP_711978.1| putative integrase [Frankia alni ACN14a] gi|111148716|emb|CAJ60391.1| Putative integrase (partial) [Frankia alni ACN14a] Length = 137 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+ L + G R++ +LGHS + T YT+V + + D+ Sbjct: 61 HDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTHVMPETQRDAVDR 111 >gi|331004087|ref|ZP_08327569.1| hypothetical protein HMPREF0491_02431 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411673|gb|EGG91081.1| hypothetical protein HMPREF0491_02431 [Lachnospiraceae oral taxon 107 str. F0167] Length = 67 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 T H RH+F + + +G D +++Q I+GHS + T YT+++S Sbjct: 7 TPHVYRHTFCSKMAKSGMDPKTLQYIMGHSDIGVTLNTYTHLSS 50 >gi|331701911|ref|YP_004398870.1| integrase family protein [Lactobacillus buchneri NRRL B-30929] gi|329129254|gb|AEB73807.1| integrase family protein [Lactobacillus buchneri NRRL B-30929] Length = 377 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYT 42 H+LRHS +LLS G D+ I LGH+ +S TT+IY+ Sbjct: 306 HSLRHSHVAYLLSRGIDIYIISKRLGHADVSTTTKIYS 343 >gi|296162521|ref|ZP_06845311.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887229|gb|EFG67057.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 565 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H LRH+ AT L+ G +LRS++ L H+ ++TT Y + Sbjct: 508 SPHWLRHTHATRALARGVELRSVRDNLRHASIATTSQYVH 547 >gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] Length = 357 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT L+ NG ++++IQ LGH+ T Y++V K +I ++ Sbjct: 300 TMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVTPKMEDDIVER 352 >gi|294340300|emb|CAZ88677.1| putative Phage integrase [Thiomonas sp. 3As] Length = 334 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 24/45 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 MS + H +RHS A LL +G D I LGH STT +Y + Sbjct: 256 MSVSPHIVRHSTAMSLLQSGVDPCEIALWLGHESPSTTHMYVEAD 300 >gi|294142151|ref|YP_003558129.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293328620|dbj|BAJ03351.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] Length = 198 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + AT + + ++R++Q +LGHS+L T Y V + + + +QT Sbjct: 146 HTMRRTKATLIYARTKNIRAVQILLGHSKLDNTIRYLGVELEDALRLSEQT 196 >gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4] gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4] Length = 413 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H+LRH +A+ L+ G ++++Q LGH + TT ++Y ++ Sbjct: 320 TWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVYAHL 361 >gi|160934684|ref|ZP_02082070.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753] gi|156866137|gb|EDO59509.1| hypothetical protein CLOLEP_03557 [Clostridium leptum DSM 753] Length = 412 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 23/34 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 HTLRH+FAT D+ ++ ILGH++ +TT+ Sbjct: 356 HTLRHTFATRAFELAFDIPTLAEILGHAQKTTTE 389 >gi|160897352|ref|YP_001562934.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362936|gb|ABX34549.1| integrase family protein [Delftia acidovorans SPH-1] Length = 333 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHS A+ +++N DL ++ ++LGH ++ Y ++ KR+ Sbjct: 270 HDLRHSAASEMINNDIDLYTVGAVLGHKDQRSSARYAHLAVKRL 313 >gi|121594246|ref|YP_986142.1| phage integrase family protein [Acidovorax sp. JS42] gi|120606326|gb|ABM42066.1| phage integrase family protein [Acidovorax sp. JS42] Length = 417 Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH +RH+ TH S+ DL++++ LGH+ ++TT IY Sbjct: 359 SAHWMRHTAGTHQ-SDNMDLKAVRDNLGHANIATTSIY 395 >gi|19552766|ref|NP_600768.1| integrase [Corynebacterium glutamicum ATCC 13032] Length = 145 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVNSKRMMEI 52 T H+ RH +A+ L+S G ++ +Q LGH+ +STT + +N++ EI Sbjct: 72 CVTFHSFRHLYASRLISAGVSVKQVQRDLGHTTVSTTLDTYVPFFPGLNNQPAAEI 127 >gi|164687373|ref|ZP_02211401.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM 16795] gi|164603797|gb|EDQ97262.1| hypothetical protein CLOBAR_01014 [Clostridium bartlettii DSM 16795] Length = 193 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y VN Sbjct: 140 PHKFRRTLATRAIDKGMPIEQVQQLLGHSKIDTTLQYAMVN 180 >gi|160882465|ref|ZP_02063468.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483] gi|299146300|ref|ZP_07039368.1| integrase [Bacteroides sp. 3_1_23] gi|156112177|gb|EDO13922.1| hypothetical protein BACOVA_00416 [Bacteroides ovatus ATCC 8483] gi|298516791|gb|EFI40672.1| integrase [Bacteroides sp. 3_1_23] Length = 318 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---------TNVNSKRMMEIY 53 T++T RHS+AT G + I LGH + TTQIY T VN K + + Sbjct: 253 VTSYTFRHSWATTAKYRGVSIEMISESLGHKSIKTTQIYLKGFGLRERTEVNRKNLSYVR 312 Query: 54 D 54 D Sbjct: 313 D 313 >gi|193070428|ref|ZP_03051369.1| site-specific recombinase [Escherichia coli E110019] gi|192956247|gb|EDV86709.1| site-specific recombinase [Escherichia coli E110019] Length = 213 Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182 >gi|313620384|gb|EFR91787.1| phage integrase family protein [Listeria innocua FSL S4-378] Length = 309 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|312891747|ref|ZP_07751255.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295778|gb|EFQ72939.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 381 Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYDQ 55 HT RHS+A L G + + ++GH+ + T++Y N+ + M ++D+ Sbjct: 322 HTARHSWAVRALQKGMRIEYVSKLMGHASVKQTEVYAKILNMELDKAMSVFDK 374 >gi|312872314|ref|ZP_07732384.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] gi|311092137|gb|EFQ50511.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2062A-h1] Length = 372 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RH+FAT L+S +++Q ILGH + T +YT++N +E Sbjct: 313 TVHGFRHTFATLLISETNVKPKTVQMILGHKNIEITLNLYTHINQDNQIE 362 >gi|302339270|ref|YP_003804476.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301636455|gb|ADK81882.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 416 Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H+ RH+ T LLSNG D I++ LG + YT+ + + D S +K Sbjct: 351 TPHSFRHTLNTLLLSNGYDSGKIRATLGWTSEKIQDNYTHFSIDHLNGQSDMVE-SFFEK 409 Query: 64 DKKN 67 DKKN Sbjct: 410 DKKN 413 >gi|238549740|dbj|BAH66091.1| integrase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 95 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++ T HT RHS+ H+L + + IQ++ GH + ++YT V + M Sbjct: 21 IAVTPHTFRHSYIMHMLYHRQLRKVIQALAGHKDPRSMEVYTRVFALDM 69 >gi|188025813|ref|ZP_02959902.2| hypothetical protein PROSTU_01805 [Providencia stuartii ATCC 25827] gi|188020588|gb|EDU58628.1| hypothetical protein PROSTU_01805 [Providencia stuartii ATCC 25827] Length = 149 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 23/48 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH+ + T YT N R ++ Sbjct: 102 HMLRHACGYALADRGADTRLIQDYLGHTNIQHTVRYTASNPARFRGVW 149 >gi|167762411|ref|ZP_02434538.1| hypothetical protein BACSTE_00765 [Bacteroides stercoris ATCC 43183] gi|167699517|gb|EDS16096.1| hypothetical protein BACSTE_00765 [Bacteroides stercoris ATCC 43183] Length = 58 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 RH+FAT L+NG + S+ +LGH+ + T+ Y V Sbjct: 3 RHTFATFALANGVSIESVAKMLGHTNVQMTRHYARV 38 >gi|16799599|ref|NP_469867.1| hypothetical protein lin0524 [Listeria innocua Clip11262] gi|16412964|emb|CAC95756.1| lin0524 [Listeria innocua Clip11262] Length = 309 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|313605682|gb|EFR83057.1| phage integrase family protein [Listeria monocytogenes FSL F2-208] Length = 309 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|302525499|ref|ZP_07277841.1| predicted protein [Streptomyces sp. AA4] gi|302434394|gb|EFL06210.1| predicted protein [Streptomyces sp. AA4] Length = 492 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH FA+ +LS G ++ + + LGHS + T ++YT++ Sbjct: 427 HALRHLFASLMLSRGVSIKELSAYLGHSSEAFTLRVYTHL 466 >gi|293602299|ref|ZP_06684745.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819061|gb|EFF78096.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 258 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+F L + G D+R I + H + T+ YT +N ++ ++ P Sbjct: 201 STHWLRHTFGRQLTAMGVDVRVIAKAMRHDDVRTSMAYTELNFLDVVRELEKVRP 255 >gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 360 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H RH+FA+ L N D +I I+GHS TT +Y + KR+ ++ D+ Sbjct: 308 HDTRHTFASLLSDNVADKDAIIKIIGHSNYKTTSDVYIHKEIKRLKKVVDE 358 >gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] Length = 413 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTHPSI 60 H +RH+ A+ LL NG L I LGH TT Y ++ K ++E+ D Sbjct: 345 PHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLRIDIDGLMKCVLEVPDVPSDFY 404 Query: 61 TQK 63 TQK Sbjct: 405 TQK 407 >gi|210621315|ref|ZP_03292585.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275] gi|210154825|gb|EEA85831.1| hypothetical protein CLOHIR_00528 [Clostridium hiranonis DSM 13275] Length = 320 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LR + AT L+ NG + +Q++L H ++TTQ+Y Sbjct: 276 SPHKLRATAATSLIQNGFTIYDVQNLLDHDNVTTTQLY 313 >gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 392 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+ AT LLS +L+ IQ LGH ++TT IY++V Sbjct: 325 HDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIYSHV 364 >gi|70726809|ref|YP_253723.1| integrase [Staphylococcus haemolyticus JCSC1435] gi|68447533|dbj|BAE05117.1| integrase [Staphylococcus haemolyticus JCSC1435] Length = 341 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+H LRH+ ++LL+ G + I LGH +S T T V S + E Y + TQ Sbjct: 281 TSHALRHTHCSYLLAKGISIYYISKRLGHKNISVT---TEVYSHLLEETYKEEDEKATQ 336 >gi|295104601|emb|CBL02145.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 383 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT L G D++++ +LGH+ + T +++++ KR Sbjct: 316 HALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKR 361 >gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238] gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238] Length = 395 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A++ +S+G ++ + +LGH+++ TT Y ++ Sbjct: 323 HDLRHTYASNAVSSGMPIQMVGRLLGHTQIQTTMRYAHL 361 >gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 424 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 24/42 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHSFA+ L G DL I +LGH L +T Y ++ + Sbjct: 354 HDLRHSFASDALELGEDLIMIGKLLGHRDLKSTARYAHLKKE 395 >gi|302562820|ref|ZP_07315162.1| transposase A [Streptomyces griseoflavus Tu4000] gi|302480438|gb|EFL43531.1| transposase A [Streptomyces griseoflavus Tu4000] Length = 271 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRHS ATH L G D +Q +LGH+ + Y +V+ D+ Sbjct: 214 HMLRHSAATHWLREGVDRDVVQKLLGHASPLSMDRYRHVDESETRAAVDRAQ 265 >gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07] gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07] Length = 424 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 + H RH+FAT G +++Q LGH+ L T +YT+V Sbjct: 332 SGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQMTMDLYTHV 373 >gi|291326651|ref|ZP_06125300.2| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM 1131] gi|291313886|gb|EFE54339.1| type 1 fimbriae regulatory protein FimB [Providencia rettgeri DSM 1131] Length = 149 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 23/48 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH+ + T YT N R ++ Sbjct: 102 HMLRHACGYALADRGADTRLIQDYLGHTNIQHTVRYTASNPARFRGVW 149 >gi|37524279|ref|NP_927623.1| hypothetical protein plu0260 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783702|emb|CAE12555.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 188 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 24/48 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T YT N++R ++ Sbjct: 135 HMLRHACGFALADRGIDTRLIQDYLGHKNIRHTVRYTASNAERFQGVW 182 >gi|62390436|ref|YP_225838.1| phage integrase-fragment [Corynebacterium glutamicum ATCC 13032] gi|21324321|dbj|BAB98946.1| Integrase [Corynebacterium glutamicum ATCC 13032] gi|41325773|emb|CAF21561.1| putative phage integrase-fragment [Corynebacterium glutamicum ATCC 13032] Length = 152 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVNSKRMMEI 52 T H+ RH +A+ L+S G ++ +Q LGH+ +STT + +N++ EI Sbjct: 79 CVTFHSFRHLYASRLISAGVSVKQVQRDLGHTTVSTTLDTYVPFFPGLNNQPAAEI 134 >gi|330959438|gb|EGH59698.1| integrase family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 466 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + TT H RH++ L S G D I+ + H+ L + ++YT N++ Sbjct: 385 LGTTPHGHRHAYGRRLRSAGIDKALIRRFMHHTSLESQEVYTQANAR 431 >gi|284800799|ref|YP_003412664.1| integrase [Listeria monocytogenes 08-5578] gi|284993985|ref|YP_003415753.1| integrase [Listeria monocytogenes 08-5923] gi|284056361|gb|ADB67302.1| integrase [Listeria monocytogenes 08-5578] gi|284059452|gb|ADB70391.1| integrase [Listeria monocytogenes 08-5923] Length = 309 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|212691119|ref|ZP_03299247.1| hypothetical protein BACDOR_00609 [Bacteroides dorei DSM 17855] gi|212666351|gb|EEB26923.1| hypothetical protein BACDOR_00609 [Bacteroides dorei DSM 17855] Length = 47 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 2 MLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEE 37 >gi|159045130|ref|YP_001533924.1| hypothetical protein Dshi_2590 [Dinoroseobacter shibae DFL 12] gi|157912890|gb|ABV94323.1| hypothetical protein Dshi_2590 [Dinoroseobacter shibae DFL 12] Length = 210 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + A + G+LR++Q +LGH+++ +T Y V + + I +Q Sbjct: 158 HSLRRTKAAAIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALTIAEQ 207 >gi|317013308|gb|ADU83916.1| integrase/recombinase (xerD) [Helicobacter pylori Lithuania75] Length = 355 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] Length = 387 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H LRH+ A+ + G +++++Q +LGH S T +Y ++ +M++ Sbjct: 309 TPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 358 >gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B] gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B] Length = 276 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 23/38 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH RH + L+ G + ++ + GHS ++TT+IYT Sbjct: 225 AHNFRHLYCLTLIEKGLTIDTVADLAGHSNINTTRIYT 262 >gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 391 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 T H LRH+ A+ + G +++++Q +LGH S T +Y ++ +M++ Sbjct: 313 TPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDSDLMDV 362 >gi|254417428|ref|ZP_05031169.1| site-specific recombinase, phage integrase family protein [Microcoleus chthonoplastes PCC 7420] gi|196175771|gb|EDX70794.1| site-specific recombinase, phage integrase family protein [Microcoleus chthonoplastes PCC 7420] Length = 319 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RHS TH L GD+R +Q + H +L T IY + Sbjct: 262 SPHRIRHSSITHALDVTGDVRKVQGLSRHVKLETLMIYDD 301 >gi|90961218|ref|YP_535134.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90820412|gb|ABD99051.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH++AT G ++ +Q+ LGHS++ T +YT++ Sbjct: 322 TVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSI 363 >gi|325273529|ref|ZP_08139763.1| integrative genetic element Ppu40, integrase [Pseudomonas sp. TJI-51] gi|324101336|gb|EGB98948.1| integrative genetic element Ppu40, integrase [Pseudomonas sp. TJI-51] Length = 360 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+ A+ L+ G L S+Q +GH ++TT Y ++ + +M+ + + Q Sbjct: 283 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQARNALEATPAQ 339 >gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A] gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A] Length = 313 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ Sbjct: 260 HILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHL 298 >gi|255306828|ref|ZP_05350999.1| phage integrase family protein [Clostridium difficile ATCC 43255] Length = 650 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LRH+ A + G + IQ ILGH L T Y V+ + E + T Sbjct: 464 HSLRHTRAKEYVEQGMGISVIQQILGHQSLQMTVHYATVSENVLYEKWKNT 514 >gi|167760423|ref|ZP_02432550.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704] gi|167661922|gb|EDS06052.1| hypothetical protein CLOSCI_02797 [Clostridium scindens ATCC 35704] Length = 412 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 +AH LRH+ T + D++ +Q ++GH+ +S T ++Y ++ + +E Sbjct: 352 SAHILRHTACTRMAETDLDMKVVQYVMGHANISVTMEVYNHITDRSRIE 400 >gi|332883197|gb|EGK03480.1| hypothetical protein HMPREF9456_01547 [Dysgonomonas mossii DSM 22836] Length = 401 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T + RHSFAT L +G ++ I LGHS TQIY Sbjct: 344 IDLTTYVARHSFATVLKRSGVNISIISESLGHSSEKVTQIY 384 >gi|254260803|ref|ZP_04951857.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1710a] gi|254219492|gb|EET08876.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1710a] Length = 247 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246 >gi|217032607|ref|ZP_03438095.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128] gi|298736017|ref|YP_003728542.1| hypothetical protein HPB8_521 [Helicobacter pylori B8] gi|216945677|gb|EEC24304.1| hypothetical protein HPB128_11g1 [Helicobacter pylori B128] gi|298355206|emb|CBI66078.1| conserved hypothetical protein [Helicobacter pylori B8] Length = 355 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|154795716|gb|ABS86842.1| integrase/recombinase [Helicobacter cetorum] Length = 355 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|116871900|ref|YP_848681.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740778|emb|CAK19898.1| bacteriophage integrase, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 309 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITVHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|300214143|gb|ADJ78559.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 381 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH++AT G ++ +Q+ LGHS++ T +YT++ Sbjct: 322 TVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSI 363 >gi|298387612|ref|ZP_06997164.1| integrase [Bacteroides sp. 1_1_14] gi|298259819|gb|EFI02691.1| integrase [Bacteroides sp. 1_1_14] Length = 316 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQIY Sbjct: 250 TSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287 >gi|271965522|ref|YP_003339718.1| integrase/recombinase [Streptosporangium roseum DSM 43021] gi|270508697|gb|ACZ86975.1| integrase/recombinase [Streptosporangium roseum DSM 43021] Length = 324 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 M T H R +F LL G DL + Q+++GHS +TT Sbjct: 261 MPRTPHDFRRTFIGELLDAGVDLATAQALVGHSSPATT 298 >gi|302345565|ref|YP_003813918.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302148959|gb|ADK95221.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 267 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH +A + L + D+ + ++GH + TT+IY S I D+ Sbjct: 214 HSFRHRYAKNFLESFNDVVLLADLMGHESIETTRIYLRRTSNEQQAIVDK 263 >gi|237746537|ref|ZP_04577017.1| integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229377888|gb|EEO27979.1| integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 308 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 TAH+LRH+ T L G L+ +Q HS + TTQIY Sbjct: 227 TAHSLRHTAVTVSLQAGATLQQVQQFARHSLIMTTQIYA 265 >gi|253987680|ref|YP_003039036.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638587|emb|CAR67207.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779130|emb|CAQ82290.1| type 1 fimbriae regulatory protein fimb [Photorhabdus asymbiotica] Length = 188 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 24/48 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGH + T YT N++R ++ Sbjct: 135 HMLRHACGFALADRGVDTRLIQDYLGHKNIRHTVRYTASNAERFQGVW 182 >gi|163760613|ref|ZP_02167694.1| putative integrase protein [Hoeflea phototrophica DFL-43] gi|162282228|gb|EDQ32518.1| putative integrase protein [Hoeflea phototrophica DFL-43] Length = 236 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G DLR +Q+ LGH + T Y ++ Sbjct: 118 HILRHTCASRLVQAGIDLRRVQTYLGHQTIQMTLRYAHL 156 >gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1] Length = 297 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 21/36 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRH+F T L G LR +Q GHS TT+ Y Sbjct: 235 HTLRHAFVTAALDAGVSLRDVQDGAGHSDPRTTRRY 270 >gi|324997951|ref|ZP_08119063.1| prophage integrase [Pseudonocardia sp. P1] Length = 450 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT L G D R + LGH+ +TT Sbjct: 375 HDLRHTFATLALDAGHDYREVSEWLGHADYTTT 407 >gi|300788914|ref|YP_003769205.1| integrase family protein [Amycolatopsis mediterranei U32] gi|299798428|gb|ADJ48803.1| integrase family protein [Amycolatopsis mediterranei U32] Length = 545 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 T H LRH AT L G D++ IQ +L HS + T +YTN Sbjct: 418 TLHGLRHGAATLALGAGVDMKVIQHMLRHSSIKVTMDLYTN 458 >gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US] gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US] Length = 393 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Query: 6 HTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 H RH+FAT L+ N +++Q +LGH+ + T IYT++N+K Sbjct: 336 HGFRHTFATLLIENTNVKPKTVQMLLGHANIKMTLDIYTHINNK 379 >gi|260437590|ref|ZP_05791406.1| integrase [Butyrivibrio crossotus DSM 2876] gi|292809943|gb|EFF69148.1| integrase [Butyrivibrio crossotus DSM 2876] Length = 180 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 24/38 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +S + LRH+FAT + D++S+ ILGH+ ++ T Sbjct: 129 LSANFYALRHTFATRCIELRFDIKSLSKILGHASVNIT 166 >gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 408 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFA+ + L+N L ++ +LGHS TQ Y V Sbjct: 349 TTHTARHSFASVIALANNVSLPNVAKMLGHSSTRMTQHYAKV 390 >gi|237739828|ref|ZP_04570309.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229423436|gb|EEO38483.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 352 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 11/54 (20%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS A+ L++NG D+ I LGHS ++ T + +Y +PS Sbjct: 295 HDLRHSHASFLINNGVDILLISQRLGHSNIAMT-----------LNVYSHLYPS 337 >gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048] Length = 308 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ A ++ +G D S+ +LGH+ ++ T+ Y N+ Sbjct: 247 VSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288 >gi|138897051|ref|YP_001127504.1| transposition regulatory protein TnpB [Geobacillus thermodenitrificans NG80-2] gi|134268564|gb|ABO68759.1| Transposition regulatory protein TnpB [Geobacillus thermodenitrificans NG80-2] Length = 704 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 H RH++A +L++G D+ ++Q +L H+ T Y + N+KR Sbjct: 505 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKR 549 >gi|77454660|ref|YP_345528.1| putative integrase/recombinase [Rhodococcus erythropolis PR4] gi|229493323|ref|ZP_04387114.1| phage integrase [Rhodococcus erythropolis SK121] gi|77019660|dbj|BAE46036.1| putative integrase/recombinase [Rhodococcus erythropolis PR4] gi|229319825|gb|EEN85655.1| phage integrase [Rhodococcus erythropolis SK121] Length = 427 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41 T H LRH+ A + S+ L +Q ILGH+ L+TTQ+Y Sbjct: 342 TIHDLRHTAAFRMTSDPDMPLSDVQWILGHAHLTTTQLY 380 >gi|301299613|ref|ZP_07205874.1| putative phage tail component, N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852800|gb|EFK80423.1| putative phage tail component, N-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 381 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH++AT G ++ +Q+ LGHS++ T +YT++ Sbjct: 322 TVHGLRHTYATLAAQGGMSVKQLQAQLGHSKVEITLDVYTSI 363 >gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 343 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRH+FATH G L I+ LGH + TT Y Sbjct: 283 SPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRY 320 >gi|158315245|ref|YP_001507753.1| integrase family protein [Frankia sp. EAN1pec] gi|158110650|gb|ABW12847.1| integrase family protein [Frankia sp. EAN1pec] Length = 358 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 24/42 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H L H A+ G DL +IQ +LGH ++TT Y +V+ Sbjct: 293 TPHVLWHFAASQFYLTGMDLIAIQEVLGHRWVATTMHYVHVH 334 >gi|315608606|ref|ZP_07883589.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315249709|gb|EFU29715.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 410 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H++RHS A+++L G L I ILGH TT Y V+ + E Sbjct: 343 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRE 388 >gi|298674305|ref|YP_003726055.1| integrase family protein [Methanohalobium evestigatum Z-7303] gi|298287293|gb|ADI73259.1| integrase family protein [Methanohalobium evestigatum Z-7303] Length = 191 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLR S A HLL G L + L H L+TT Y +V++ Sbjct: 133 HTLRRSRAEHLLDRGLSLTYVSRFLRHKNLATTMAYLDVST 173 >gi|153852826|ref|ZP_01994263.1| hypothetical protein DORLON_00245 [Dorea longicatena DSM 13814] gi|149754468|gb|EDM64399.1| hypothetical protein DORLON_00245 [Dorea longicatena DSM 13814] Length = 399 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385 >gi|150401987|ref|YP_001329281.1| phage integrase family protein [Methanococcus maripaludis C7] gi|159906222|ref|YP_001549884.1| integrase family protein [Methanococcus maripaludis C6] gi|150033017|gb|ABR65130.1| phage integrase family protein [Methanococcus maripaludis C7] gi|159887715|gb|ABX02652.1| integrase family protein [Methanococcus maripaludis C6] Length = 340 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LRH A LL+ G + ++ LGH+ + TT IY++ +++R ++ DQ Sbjct: 287 HSLRHGRAVDLLNKGVSIDVVKEYLGHASIETTLIYSH-STERKNKMLDQ 335 >gi|326795207|ref|YP_004313027.1| integrase family protein [Marinomonas mediterranea MMB-1] gi|326545971|gb|ADZ91191.1| integrase family protein [Marinomonas mediterranea MMB-1] Length = 283 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+LRH+FA H L G L +Q +LGH + TT Y Sbjct: 223 HSLRHAFACHQLLRGMPLPRLQILLGHQVIQTTFRY 258 >gi|323692934|ref|ZP_08107156.1| site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323503017|gb|EGB18857.1| site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 306 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+ RH FA + L D+ + ++GH + TT+IY +S+ + D+ Sbjct: 249 TVYPHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTRIYLTRSSQEQKALLDR 302 >gi|295103148|emb|CBL00692.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 383 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT L G D++++ +LGH+ + T +++++ KR Sbjct: 316 HALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKR 361 >gi|312111597|ref|YP_003989913.1| integrase [Geobacillus sp. Y4.1MC1] gi|312112615|ref|YP_003990931.1| integrase [Geobacillus sp. Y4.1MC1] gi|311216698|gb|ADP75302.1| integrase family protein [Geobacillus sp. Y4.1MC1] gi|311217716|gb|ADP76320.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 703 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 H RH++A +L++G D+ ++Q +L H+ T Y + N+KR Sbjct: 504 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKR 548 >gi|240146114|ref|ZP_04744715.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257201767|gb|EEV00052.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] Length = 269 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH +A + L D+ + ++GH + TT+IY + E+ D+ Sbjct: 216 HSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRRTASEQQELVDK 265 >gi|225573339|ref|ZP_03782094.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM 10507] gi|225039252|gb|EEG49498.1| hypothetical protein RUMHYD_01531 [Blautia hydrogenotrophica DSM 10507] Length = 408 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RH+F T + + G + +++Q I+GH+ + T Y Sbjct: 330 TPHTMRHTFCTRMANAGMNPKALQYIMGHANIVMTLNY 367 >gi|217033667|ref|ZP_03439094.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10] gi|216943856|gb|EEC23293.1| hypothetical protein HP9810_5g9 [Helicobacter pylori 98-10] Length = 355 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|187940078|gb|ACD39211.1| phage integrase [Pseudomonas aeruginosa] Length = 379 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 13/55 (23%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSI----------LGHSRLSTTQIYTNVNS 46 + T H LRH++ATH L D+R +S+ LGHS ++TTQ Y ++ S Sbjct: 306 TVTPHMLRHTYATHTLH---DMRRRKSVIDPLLYVRDRLGHSSVATTQRYLHLIS 357 >gi|71279006|ref|YP_268790.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71144746|gb|AAZ25219.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 198 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + A+ + + +LR+IQ +LGHS+L +T Y V + + I + T Sbjct: 146 HSLRRTKASLIYAKTKNLRAIQLLLGHSKLQSTIEYLGVEIEDALSISESTE 197 >gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 343 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRH+FATH G L I+ LGH + TT Y Sbjct: 283 SPHWLRHTFATHSRLAGATLEQIRVALGHESIQTTIRY 320 >gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118] Length = 383 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H RH+ A+ L G ++ ++ LGHS ++TT IYT+V K+ E Sbjct: 325 VHGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYTHVTKKKAKE 372 >gi|288927180|ref|ZP_06421060.1| integrase/recombinase y4rA [Prevotella buccae D17] gi|288336049|gb|EFC74450.1| integrase/recombinase y4rA [Prevotella buccae D17] Length = 426 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H++RHS A+++L G L I ILGH TT Y V+ + E Sbjct: 359 HSMRHSLASNMLRQGTSLPVISGILGHESTQTTMEYLRVDIVNLRE 404 >gi|253578316|ref|ZP_04855588.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850634|gb|EES78592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 399 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385 >gi|209520219|ref|ZP_03268989.1| integrase family protein [Burkholderia sp. H160] gi|209499335|gb|EDZ99420.1| integrase family protein [Burkholderia sp. H160] Length = 204 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ R + AT + +LR++Q +LGHS++ +T Y + +EI +QT Sbjct: 152 HSTRRTKATLIYKRTKNLRAVQLLLGHSKVESTIRYIGIEVDDALEISEQT 202 >gi|187736895|ref|YP_001816633.1| Int [Escherichia coli 1520] gi|172051477|emb|CAP07819.1| Int [Escherichia coli] Length = 246 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 >gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495] gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495] Length = 386 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH++AT L N L+++ +LGHS + T Sbjct: 329 HSLRHTYATRLFENDVPLKTVSELLGHSNIQIT 361 >gi|53713278|ref|YP_099270.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52216143|dbj|BAD48736.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHS+A+ + LS G + ++ +LGH L T+IY V+++++ Sbjct: 344 TFHMARHSYASLITLSQGVPMETVSRMLGHRDLRATRIYAQVSNEKI 390 >gi|53718230|ref|YP_107216.1| phage integrase family protein [Burkholderia pseudomallei K96243] gi|167814219|ref|ZP_02445899.1| phage integrase family protein [Burkholderia pseudomallei 91] gi|52208644|emb|CAH34580.1| phage integrase family protein [Burkholderia pseudomallei K96243] Length = 208 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRQTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEMAEQT 206 >gi|324997183|ref|ZP_08118295.1| phage integrase family protein [Pseudonocardia sp. P1] Length = 378 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH FA+ L++ G D+ ++Q LGHS + T Sbjct: 306 HDLRHFFASGLIAAGCDVVTVQRALGHSSATVT 338 >gi|317009395|gb|ADU79975.1| integrase/recombinase (xerD) [Helicobacter pylori India7] Length = 355 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|295100218|emb|CBK97763.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 463 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53 H+LRHS T+ L NGGD++S+Q GH+++ +Y++ +N++R+ E + Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 411 >gi|292493076|ref|YP_003528515.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291581671|gb|ADE16128.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 383 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ TH G +LR + H++L TT IY + + R E ++ Sbjct: 327 STHWLRHTAITHQADAGIELRYLNKSARHAKLETTAIYLHADEDRWHEAMEK 378 >gi|226349701|ref|YP_002776815.1| putative integrase/recombinase [Rhodococcus opacus B4] gi|226349753|ref|YP_002776867.1| putative integrase/recombinase [Rhodococcus opacus B4] gi|226245616|dbj|BAH55963.1| putative integrase/recombinase [Rhodococcus opacus B4] gi|226245668|dbj|BAH56015.1| putative integrase/recombinase [Rhodococcus opacus B4] Length = 409 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 2 STTAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41 S T H LRH+ + + L +Q +LGH++L+TTQIY Sbjct: 320 SVTLHALRHTATYRMAEDPALPLTDVQFVLGHAQLTTTQIY 360 >gi|254418245|ref|ZP_05031969.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184422|gb|EDX79398.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 429 Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHSFA+ L++G L I LGH+ T+ Y +++ Sbjct: 371 HDLRHSFASFALADGASLPMIGKALGHANSRATERYAHLS 410 >gi|126452367|ref|YP_001068206.1| phage integrase family site specific recombinase [Burkholderia pseudomallei 1106a] gi|254186411|ref|ZP_04892928.1| integrase [Burkholderia pseudomallei Pasteur 52237] gi|126226009|gb|ABN89549.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106a] gi|157934096|gb|EDO89766.1| integrase [Burkholderia pseudomallei Pasteur 52237] Length = 172 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 119 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 171 >gi|32455522|ref|NP_862274.1| ORF-2 [Lactobacillus sakei] gi|24461249|gb|AAN61996.1|AF438419_6 ORF-2 [Lactobacillus sakei] Length = 319 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 21/40 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGH R+ TT Y VN Sbjct: 267 HKFRRTLATRAIDKGMPIEQVQKLLGHVRIDTTMNYAMVN 306 >gi|330399469|ref|YP_004030567.1| hypothetical protein RBRH_00714 [Burkholderia rhizoxinica HKI 454] gi|312170206|emb|CBW77245.1| Hypothetical protein RBRH_00714 [Burkholderia rhizoxinica HKI 454] Length = 138 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH LRH+ +H G DLR++ LGH L+TT Y Sbjct: 62 ASAHWLRHTAGSHQADGGLDLRTVGDNLGHVSLTTTSRY 100 >gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 419 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH--SRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H+ RHS AT+L + G DL++ Q +L H SR+ T IYT S E ++ + + Sbjct: 314 HSFRHSLATNLRAAGADLKTAQELLRHANSRI-TLDIYTRAISANKREANNKVMEMVIEA 372 Query: 64 DK 65 K Sbjct: 373 SK 374 >gi|257083313|ref|ZP_05577674.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256991343|gb|EEU78645.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 309 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|223985058|ref|ZP_03635156.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM 12042] gi|288870485|ref|ZP_06114257.2| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|332655049|ref|ZP_08420790.1| putative prophage LambdaCh01, site-specific recombinase, phage integrase family [Ruminococcaceae bacterium D16] gi|223963030|gb|EEF67444.1| hypothetical protein HOLDEFILI_02460 [Holdemania filiformis DSM 12042] gi|288866967|gb|EFC99265.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|332515909|gb|EGJ45518.1| putative prophage LambdaCh01, site-specific recombinase, phage integrase family [Ruminococcaceae bacterium D16] Length = 465 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53 H+LRHS T+ L NGGD++S+Q GH+++ +Y++ +N++R+ E + Sbjct: 357 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 413 >gi|170751661|ref|YP_001757921.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170658183|gb|ACB27238.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 210 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 32/51 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + A+ + G+LR++Q +LGH+++ +T Y V+ + + + + T Sbjct: 158 HSLRRTKASLIYKRTGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGT 208 >gi|126660458|ref|ZP_01731567.1| Tn554, transposase B [Cyanothece sp. CCY0110] gi|126618271|gb|EAZ89031.1| Tn554, transposase B [Cyanothece sp. CCY0110] Length = 640 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 +H RH+ T +++ G +Q LGH + TQ+Y +++ + + + ++ H S Sbjct: 467 SHQFRHTVGTRMINAGVPQHIVQRYLGHESPTMTQVYAHIHDQTLRKEIEKYHES 521 >gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 385 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H RH+ A HLL +G +L+ + LGHS + T Sbjct: 319 TLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMT 353 >gi|325680240|ref|ZP_08159802.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324108057|gb|EGC02311.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 390 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+F T++ G + + +Q I+GH+ + T N N+K Sbjct: 335 TPHVCRHTFCTNMARKGMNPKMLQYIMGHADVGVTIPVPNSNTK 378 >gi|315641396|ref|ZP_07896470.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315482832|gb|EFU73354.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 167 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RH+ + L +G ++ +Q LGH+ + TT IYT+V ++ E Sbjct: 82 TPHGFRHTHCSLLFESGASIKEVQVRLGHTDIKTTMDIYTHVTKRQTEE 130 >gi|229547242|ref|ZP_04435967.1| bacteriophage integrase [Enterococcus faecalis TX1322] gi|256854683|ref|ZP_05560047.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|229307639|gb|EEN73626.1| bacteriophage integrase [Enterococcus faecalis TX1322] gi|256710243|gb|EEU25287.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|315030632|gb|EFT42564.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 309 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264] gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264] Length = 308 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 26/42 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ A ++ +G D S+ +LGH+ ++ T+ Y N+ Sbjct: 247 VSPHTFRHTMAKRMIVSGLDAFSLMHLLGHTDITVTKRYVNL 288 >gi|38637721|ref|NP_942695.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527059|gb|AAP85809.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 420 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 23/40 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRH+ AT LL + I ILGH+ ++T IY + Sbjct: 364 HSLRHTLATRLLHEQTPFQVISDILGHATTASTLIYAKTD 403 >gi|260907655|ref|ZP_05915977.1| phage integrase family protein [Brevibacterium linens BL2] Length = 657 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+H LRH++AT L++ G L+++ ++LGH + Y + + E Y++ Sbjct: 474 TSHQLRHTYATALVNAGVSLQALMALLGHVSAEMSLRYGRLFDSTVREEYER 525 >gi|317014808|gb|ADU82244.1| integrase/recombinase (xerD) [Helicobacter pylori Gambia94/24] Length = 356 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSMALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|312887413|ref|ZP_07747012.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311300053|gb|EFQ77123.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 418 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++ RHSFAT+L S D++ IQ LGH + T Y Sbjct: 363 TSYVARHSFATNLRSKDVDVKIIQEALGHETETQTTTY 400 >gi|309798434|ref|ZP_07692743.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308118044|gb|EFO55306.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 218 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 144 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 187 >gi|291166427|gb|EFE28473.1| site-specific recombinase, phage integrase family [Filifactor alocis ATCC 35896] Length = 372 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LR + A+ L+ G + +Q++L H ++TTQIY Sbjct: 309 SPHKLRSTLASSLIERGFSIYDVQNLLDHDNVTTTQIYA 347 >gi|257438450|ref|ZP_05614205.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199029|gb|EEU97313.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 384 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT---QIYTNVNSKR 48 H LRH+FAT L G D++++ +LGH+ + T +++++ KR Sbjct: 316 HALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKR 361 >gi|323339985|ref|ZP_08080252.1| PIN family toxin-antitoxin system [Lactobacillus ruminis ATCC 25644] gi|323092627|gb|EFZ35232.1| PIN family toxin-antitoxin system [Lactobacillus ruminis ATCC 25644] Length = 59 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H RH+ A+ L G ++ +Q+ LGHS TT IYT+V + E+ Sbjct: 2 HGFRHTHASLLFEAGATIKEVQTRLGHSSSKTTLDIYTHVTQPKKQEV 49 >gi|226322964|ref|ZP_03798482.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758] gi|225208531|gb|EEG90885.1| hypothetical protein COPCOM_00736 [Coprococcus comes ATCC 27758] Length = 399 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385 >gi|167041339|gb|ABZ06093.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_005I08] Length = 422 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFA+ S G L I +LGH++ +TT Y ++ Sbjct: 349 HDLRHSFASVAASGGLSLPMIGKLLGHTQAATTARYAHL 387 >gi|153814728|ref|ZP_01967396.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756] gi|145847759|gb|EDK24677.1| hypothetical protein RUMTOR_00943 [Ruminococcus torques ATCC 27756] Length = 396 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 T H RH++ +++ +G + +++Q ++GHS +S T YT+VN Sbjct: 343 TPHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVN 385 >gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 403 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 15/27 (55%), Positives = 21/27 (77%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRL 35 RH+FAT +LS G D+ +Q++LGHS L Sbjct: 311 RHTFATMMLSAGEDIGWVQNMLGHSSL 337 >gi|436133|emb|CAA82326.1| unnamed protein product [Clostridium butyricum] Length = 660 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 24/51 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LRH+ A + G + IQ ILGH L T Y V + E + T Sbjct: 475 HSLRHTRAKEYIEQGMGISIIQQILGHQSLQMTVHYATVTENVLYEKWKNT 525 >gi|17233219|ref|NP_490309.1| integrase/recombinase [Nostoc sp. PCC 7120] gi|17135741|dbj|BAB78287.1| integrase/recombinase [Nostoc sp. PCC 7120] Length = 319 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H R +F T LL +G D+ ++ + GH L+TTQ Y Sbjct: 259 SPHDFRRTFVTRLLESGIDVLTVSQLAGHVNLATTQKY 296 >gi|88857243|ref|ZP_01131886.1| putative site-specific tyrosine integrase/recombinase [Pseudoalteromonas tunicata D2] gi|88820440|gb|EAR30252.1| putative site-specific tyrosine integrase/recombinase [Pseudoalteromonas tunicata D2] Length = 403 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 TAH LRH+ ATH + L+ + LGH++L+TT QIY N K Sbjct: 349 TAHWLRHTGATH-DAQTRPLKHLSEDLGHAKLATTDQIYIQTNVK 392 >gi|303328057|ref|ZP_07358496.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302861883|gb|EFL84818.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 380 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+F + L G L +I ++GH +L T+ Y + Sbjct: 326 HTLRHTFCSWLAMKGVALYTIGELVGHKKLEMTKRYAKL 364 >gi|291531553|emb|CBK97138.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 383 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 TAH LRH+F T + G D+ + + GH +STT +IYT+++ Sbjct: 318 TAHCLRHTFITLMYLAGVDIMTAKEQAGHKDISTTLKIYTHLD 360 >gi|257417156|ref|ZP_05594150.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158984|gb|EEU88944.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 309 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|217966206|ref|YP_002351884.1| integrase [Listeria monocytogenes HCC23] gi|217335476|gb|ACK41270.1| integrase [Listeria monocytogenes HCC23] gi|307572184|emb|CAR85363.1| phage-associated integrase, putative [Listeria monocytogenes L99] Length = 397 Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYD 54 H+ RHS+A+ L + G + +Q++LGH + T YT+V +++ YD Sbjct: 338 HSFRHSYASALFAEGKPAKKVQALLGHKSIKETMDTYTHV----ILDYYD 383 >gi|300172888|ref|YP_003772053.1| prophage integrase [Leuconostoc gasicomitatum LMG 18811] gi|299887266|emb|CBL91234.1| prophage Lp3 protein 1, integrase, putative [Leuconostoc gasicomitatum LMG 18811] Length = 373 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++AT L G ++ +Q+ LGH+ S T +Y+++ + Sbjct: 317 HKLRHTWATLALDQGATVKQVQTYLGHADASITLNVYSDITKR 359 >gi|297158541|gb|ADI08253.1| integrase family protein [Streptomyces bingchenggensis BCW-1] Length = 358 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H LRH A+ L G DL IQ +LGHS ++TT Y +V R+ + + Sbjct: 291 TLTPHVLRHFCASELYLGGLDLLGIQEVLGHSWIATTMRYIHVQQTRVEDAW 342 >gi|293365161|ref|ZP_06611878.1| phage integrase [Streptococcus oralis ATCC 35037] gi|291316611|gb|EFE57047.1| phage integrase [Streptococcus oralis ATCC 35037] Length = 82 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 AH+LRH++A+ L++ +L SI ILGH ++ T ++Y Sbjct: 11 AHSLRHTYASFLIAKRIELLSISKILGHENMNVTIEVYA 49 >gi|254438890|ref|ZP_05052384.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198254336|gb|EDY78650.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 420 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 19/36 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRHS AT +L G L I +L H TT IY Sbjct: 363 HILRHSLATDMLRKGASLDEIGDVLRHRSAMTTTIY 398 >gi|167921000|ref|ZP_02508091.1| putative bacteriophage integrase [Burkholderia pseudomallei BCC215] Length = 222 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 169 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 221 >gi|167900131|ref|ZP_02487532.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 7894] Length = 151 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 98 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150 >gi|167740725|ref|ZP_02413499.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 14] Length = 151 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 98 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150 >gi|40204867|emb|CAF02036.1| integrase [Streptococcus mitis] Length = 99 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ A+ L G + I LGH+ + TT +YT++N + +E+ DQ Sbjct: 39 TPHGFRHTHASLLFEAGLTAKIISDRLGHNNVQTTLDMYTHINDNQRVEVVDQ 91 >gi|308067605|ref|YP_003869210.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305856884|gb|ADM68672.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 281 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T H LRH+ L+ L +IQ ILGH ++TT IYT + M E Sbjct: 225 VKVTPHMLRHTLGYKLVKTT-PLTTIQQILGHDHVATTNIYTLTTQQDMAE 274 >gi|262383616|ref|ZP_06076752.1| integrase [Bacteroides sp. 2_1_33B] gi|262294514|gb|EEY82446.1| integrase [Bacteroides sp. 2_1_33B] Length = 383 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R ++AT + G D+R+IQS + H ++TTQ Y V Sbjct: 326 TFHSYRRTYATLQGAAGTDIRTIQSNMAHKSITTTQRYMKV 366 >gi|239624324|ref|ZP_04667355.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520710|gb|EEQ60576.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 463 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53 H+LRHS T+ L NGGD++S+Q GH+++ +Y++ +N++R+ E + Sbjct: 355 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 411 >gi|159904807|ref|YP_001548469.1| integrase family protein [Methanococcus maripaludis C6] gi|159886300|gb|ABX01237.1| integrase family protein [Methanococcus maripaludis C6] Length = 328 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRH A LL+ G + ++ ILGH L TT Y++ ++ + D Sbjct: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQD 323 >gi|326802762|ref|YP_004320580.1| site-specific recombinase, phage integrase family [Aerococcus urinae ACS-120-V-Col10a] gi|326651079|gb|AEA01262.1| site-specific recombinase, phage integrase family [Aerococcus urinae ACS-120-V-Col10a] Length = 306 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 8/60 (13%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIYDQ 55 T H LRH+ A+ LL G + S+ LGH+ ++TTQ Y ++ ++ +MMEI Q Sbjct: 246 TIHALRHTHASMLLYGGVSIASVAKRLGHANMATTQKTYLHIIQELEDKDNNKMMEILCQ 305 >gi|323485586|ref|ZP_08090930.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163] gi|323401104|gb|EGA93458.1| site-specific recombinase XerD [Clostridium symbiosum WAL-14163] Length = 306 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY +S+ + D+ Sbjct: 252 PHSFRHRFAKNFLKRFNDISLLADLMGHDSIETTRIYLTRSSQEQKALLDR 302 >gi|317181601|dbj|BAJ59385.1| integrase/recombinase [Helicobacter pylori F57] Length = 358 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54 T H RHSFAT + + D+ LGH LS+T+IY + +K+++ I+D Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQVVSIFD 353 >gi|312902063|ref|ZP_07761324.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] gi|311290845|gb|EFQ69401.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] Length = 309 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305] gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305] Length = 303 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYT 42 T H RH+ A L+ N DL + ILGH L+TT YT Sbjct: 248 TPHLFRHTMAHQFLADNENDLVGLAQILGHENLNTTARYT 287 >gi|308185145|ref|YP_003929278.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180] gi|308061065|gb|ADO02961.1| integrase/recombinase (xerD) [Helicobacter pylori SJM180] Length = 355 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 294 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 348 >gi|294663047|ref|YP_003566017.1| site-specific recombinase, phage integrase family [Bacillus megaterium QM B1551] gi|294352012|gb|ADE72337.1| site-specific recombinase, phage integrase family [Bacillus megaterium QM B1551] Length = 382 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 24/49 (48%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RH +A + G D+ IQ LGHS TT+ Y +R EI Sbjct: 325 TPHYFRHFYAIYSRQQGADIFLIQKELGHSDRKTTERYLEKVLQREQEI 373 >gi|291551327|emb|CBL27589.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 306 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA + DL + +LGHS ++ T+IYT Sbjct: 231 HNLRHLFARSYYEDTKDLAGLADLLGHSSVNVTRIYT 267 >gi|257078400|ref|ZP_05572761.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294780397|ref|ZP_06745764.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|256986430|gb|EEU73732.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|294452526|gb|EFG20961.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|329575632|gb|EGG57165.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1467] Length = 309 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|227517376|ref|ZP_03947425.1| bacteriophage integrase [Enterococcus faecalis TX0104] gi|229548135|ref|ZP_04436860.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200] gi|256958289|ref|ZP_05562460.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257088127|ref|ZP_05582488.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257091256|ref|ZP_05585617.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|307274411|ref|ZP_07555595.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|312905315|ref|ZP_07764430.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|227075175|gb|EEI13138.1| bacteriophage integrase [Enterococcus faecalis TX0104] gi|229306736|gb|EEN72732.1| bacteriophage integrase [Enterococcus faecalis ATCC 29200] gi|256948785|gb|EEU65417.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256996157|gb|EEU83459.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257000068|gb|EEU86588.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|306508921|gb|EFM78007.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|310631339|gb|EFQ14622.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|315026884|gb|EFT38816.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2137] gi|315036577|gb|EFT48509.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] gi|315162494|gb|EFU06511.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315578594|gb|EFU90785.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 309 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|225350722|ref|YP_002720709.1| integrase [Brachyspira hyodysenteriae WA1] gi|225216406|gb|ACN85139.1| integrase [Brachyspira hyodysenteriae WA1] Length = 274 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 6 HTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT 38 HTLRHSFAT LL + L+++ LGHS + T Sbjct: 224 HTLRHSFATELLIKDNKSLKAVSKYLGHSSTAIT 257 >gi|15612006|ref|NP_223658.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99] gi|4155519|gb|AAD06517.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99] Length = 331 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGHS L +T+IY T ++K++ ++D Sbjct: 270 TGLHLFRHSFATLIYQETQDLVLTSRALGHSSLLSTKIYIHTTQEHNKKVALVFD 324 >gi|323495077|ref|ZP_08100166.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] gi|323310734|gb|EGA63909.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] Length = 440 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQT 56 H LR + AT+ +S+GG L++ +LGHS +S T+ +Y +++ + + +QT Sbjct: 342 VHDLRRTLATYQVSSGGSLQATSKLLGHSNVSITSDVYAHLSVDIVRQELEQT 394 >gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 356 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYT 42 M H RH+FAT L + G + I+ ++GHS +TT+ IYT Sbjct: 299 MEHLPHDCRHTFATRLSNYGANSTCIKKLIGHSSYTTTEKIYT 341 >gi|309791407|ref|ZP_07685914.1| integrase family protein [Oscillochloris trichoides DG6] gi|308226540|gb|EFO80261.1| integrase family protein [Oscillochloris trichoides DG6] Length = 382 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 +T+ HT RH HLL+ G L + IL H + T+ Y ++ E++DQ Sbjct: 319 TTSPHTFRHFVGYHLLNEGVALAEVSQILRHHSVEVTRSYYAAYRDVQLQEVHDQ 373 >gi|307268429|ref|ZP_07549807.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|306515236|gb|EFM83773.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] Length = 309 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 476 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH+FAT L +G D++++ + +GH S +T IY+++ Sbjct: 325 HDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364 >gi|282904507|ref|ZP_06312392.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|282917221|ref|ZP_06324976.1| integrase [Staphylococcus aureus subsp. aureus D139] gi|282318848|gb|EFB49203.1| integrase [Staphylococcus aureus subsp. aureus D139] gi|282595063|gb|EFC00030.1| integrase [Staphylococcus aureus subsp. aureus C160] Length = 348 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348 >gi|270294584|ref|ZP_06200786.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270276051|gb|EFA21911.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 406 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H+ RHS+AT + L+NG + ++ +LGH+ S T+ Y V + +++ + + +++ Sbjct: 346 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNSCLSE 403 >gi|269216376|ref|ZP_06160230.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Slackia exigua ATCC 700122] gi|269130635|gb|EEZ61713.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Slackia exigua ATCC 700122] Length = 452 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT L+ +G D+++ Q LGHS S T Sbjct: 345 HELRHTQATLLIGSGADIKTAQQRLGHSSASLT 377 >gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1] Length = 396 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+ RH FA+ L++ G D+ ++ LGHS +STT Sbjct: 329 HSFRHLFASLLVNQGVDIVTVSGALGHSTVSTT 361 >gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121] gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121] Length = 246 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LR + ATH G DL +IQ +LGH + +T Y ++ + + Y Sbjct: 179 SPHALRRACATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSATFIEDAY 228 >gi|218135225|ref|ZP_03464029.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC 43243] gi|217990610|gb|EEC56621.1| hypothetical protein BACPEC_03130 [Bacteroides pectinophilus ATCC 43243] Length = 261 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + +E + + Sbjct: 182 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRLEDFRKA 241 Query: 57 HPSITQKDKK 66 + QK +K Sbjct: 242 QAEVEQKKEK 251 >gi|111025561|ref|YP_707981.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110824540|gb|ABG99823.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 384 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS A HL G L + LGH+ TT IY + ++K Sbjct: 343 HMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTK 384 >gi|325298363|ref|YP_004258280.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317916|gb|ADY35807.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 405 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 23/41 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 M T +T RHS+A+ + G L I LGH L TTQIY Sbjct: 342 MPLTTYTGRHSWASTMRDMGVSLSVISKGLGHESLKTTQIY 382 >gi|319901590|ref|YP_004161318.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416621|gb|ADV43732.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 400 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RH +AT L NG + +I LGHS T+IY Sbjct: 344 HAARHCWATMALDNGTPIHTISECLGHSSEKVTKIY 379 >gi|301308504|ref|ZP_07214458.1| integrase [Bacteroides sp. 20_3] gi|300833974|gb|EFK64590.1| integrase [Bacteroides sp. 20_3] Length = 444 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSFA+ + LS G + ++ +GH +STTQ Y V ++++ Sbjct: 347 HMARHSFASQVCLSLGVPIETVSKAMGHRNISTTQRYAKVTNEKV 391 >gi|295085116|emb|CBK66639.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 239 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T RHS+AT G + I LGH + TTQIY Sbjct: 174 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212 >gi|126441658|ref|YP_001060897.1| phage integrase family site specific recombinase [Burkholderia pseudomallei 668] gi|126221151|gb|ABN84657.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 668] Length = 99 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 46 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 98 >gi|186474496|ref|YP_001863467.1| integrase family protein [Burkholderia phymatum STM815] gi|184198455|gb|ACC76417.1| integrase family protein [Burkholderia phymatum STM815] Length = 335 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + H +RH+ A H+L G DL I LGH +TT +Y + Sbjct: 260 SPHVVRHATAMHMLQGGVDLSLIALWLGHESPATTHMYIEAD 301 >gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 267 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302 >gi|45358035|ref|NP_987592.1| integrase/recombinase [Methanococcus maripaludis S2] gi|44920792|emb|CAF30028.1| Probable integrase/recombinase [Methanococcus maripaludis S2] Length = 328 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRH A LL+ G + ++ ILGH L TT Y++ ++ + D Sbjct: 275 HSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSHSRQRKEQMLQD 323 >gi|39934406|ref|NP_946682.1| phage integrase/recombinase [Rhodopseudomonas palustris CGA009] gi|39648255|emb|CAE26775.1| possible phage integrase/recombinase [Rhodopseudomonas palustris CGA009] Length = 280 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + AT + G+LR++Q +LGH+++ +T Y + + + +Q Sbjct: 228 HSLRRTKATLIYRRTGNLRAVQLLLGHTKIESTVRYLGIEVDDALAMAEQ 277 >gi|119714098|ref|YP_919240.1| phage integrase family protein [Nocardioides sp. JS614] gi|119716491|ref|YP_923456.1| phage integrase family protein [Nocardioides sp. JS614] gi|119717197|ref|YP_924162.1| phage integrase family protein [Nocardioides sp. JS614] gi|119526007|gb|ABL79377.1| phage integrase family protein [Nocardioides sp. JS614] gi|119537152|gb|ABL81769.1| phage integrase family protein [Nocardioides sp. JS614] gi|119537858|gb|ABL82475.1| phage integrase family protein [Nocardioides sp. JS614] Length = 797 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 22/44 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 M T H R F T + +G L ILGH L++TQ YT V Sbjct: 611 MHLTPHDFRRVFTTTAVQDGLPLHIASRILGHRHLNSTQPYTAV 654 >gi|315171544|gb|EFU15561.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1342] Length = 309 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|315149122|gb|EFT93138.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0012] Length = 309 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|315148958|gb|EFT92974.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4244] Length = 309 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 476 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH+FAT L +G D++++ + +GH S +T IY+++ Sbjct: 325 HDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHI 364 >gi|291541000|emb|CBL14111.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 411 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+F +++ +G + + +Q I+GHS +S T YT+V + E + + Sbjct: 355 TPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQK 407 >gi|256960370|ref|ZP_05564541.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384343|ref|ZP_06630228.1| DNA integration/recombination/inversion protein [Enterococcus faecalis R712] gi|293388421|ref|ZP_06632929.1| DNA integration/recombination/inversion protein [Enterococcus faecalis S613] gi|312908543|ref|ZP_07767487.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312908987|ref|ZP_07767849.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|256950866|gb|EEU67498.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078335|gb|EFE15699.1| DNA integration/recombination/inversion protein [Enterococcus faecalis R712] gi|291082196|gb|EFE19159.1| DNA integration/recombination/inversion protein [Enterococcus faecalis S613] gi|310625510|gb|EFQ08793.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|311290687|gb|EFQ69243.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|315169211|gb|EFU13228.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] Length = 309 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|300861379|ref|ZP_07107465.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|300849171|gb|EFK76922.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|315145852|gb|EFT89868.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] Length = 309 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 25/36 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TVHSLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|260589474|ref|ZP_05855387.1| transposase [Blautia hansenii DSM 20583] gi|260540042|gb|EEX20611.1| transposase [Blautia hansenii DSM 20583] Length = 206 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 T H RH++ T++ G + +S+Q ++GHS ++TT +YT+ Sbjct: 148 TPHVCRHTYCTNMARAGMNPKSLQYLMGHSEVATTMDVYTH 188 >gi|189095315|ref|YP_001936328.1| putative integrase/recombinase protein [Heterosigma akashiwo] gi|157694658|gb|ABV65934.1| putative integrase/recombinase protein [Heterosigma akashiwo] Length = 316 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 22/40 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+H+ R + T L + D+ I+ +GH +L TT Y N Sbjct: 244 TSHSFRIGYITQLWKDSKDIEFIKQTIGHRKLDTTSAYVN 283 >gi|160939517|ref|ZP_02086867.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC BAA-613] gi|158437727|gb|EDP15489.1| hypothetical protein CLOBOL_04410 [Clostridium bolteae ATCC BAA-613] Length = 462 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 9/57 (15%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTN-------VNSKRMMEIY 53 H+LRHS T+ L NGGD++S+Q GH+++ +Y++ +N++R+ E + Sbjct: 357 HSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDEDRCINAQRLEEAF 413 >gi|38637711|ref|NP_942685.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527049|gb|AAP85799.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 410 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 21/40 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RH+ AT +L G L I +L H +T+IY V+ Sbjct: 355 HQFRHALATQMLRQGSSLAEISEVLRHKSPDSTRIYAKVD 394 >gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928] gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928] gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928] Length = 391 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+FAT L++ +++Q +LGH + T IYT++N K Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKK 377 >gi|29345785|ref|NP_809288.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29337678|gb|AAO75482.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 229 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 163 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 201 >gi|146277760|ref|YP_001167919.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145556001|gb|ABP70614.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 332 Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 T HTLRH+ A H+ G + I LGHS + T+ +Y + + + + D Sbjct: 270 TLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321 >gi|323191433|gb|EFZ76695.1| hbiF [Escherichia coli RN587/1] Length = 52 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 24/48 (50%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 2 LRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKRVWKK 49 >gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 329 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+FAT +LS G + + + ILGHS + T Y++V Sbjct: 273 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHV 312 >gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 396 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 28/45 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+ AT L+ G ++ + ILGHSR+ T Y + +++ MM Sbjct: 339 HGLRHTAATLLMKLGVHVKIVSDILGHSRVQVTLDYYSHSNEEMM 383 >gi|295107441|emb|CBL04984.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 264 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + +S D+ + ++GH + TT+IY Sbjct: 211 HSFRHLFAKNFISKNPDIAFLADLMGHESIETTRIY 246 >gi|295087091|emb|CBK68614.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 266 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + T +IY + EI D+ Sbjct: 213 HSFRHRFAKNFLEKFNDISLLADLMGHESIETARIYLRRTALEQQEIVDK 262 >gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] Length = 324 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H RH+ + L S G D+ ++Q LGHS L TT Q+Y +V Sbjct: 265 SPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTTMQVYNHV 306 >gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 431 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 27/47 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH++A+ G L I +LGH ++TTQ Y ++++ M + Sbjct: 365 HDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAHLDTNPMKRV 411 >gi|92112108|gb|ABE73742.1| putative integrase/recombinase [Azoarcus communis] Length = 413 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H++R + AT + +LR++Q +LGHS+L +T Y +EI +Q Sbjct: 361 HSMRRTKATLIYKRTKNLRAVQLLLGHSKLESTVRYLGTEVDDALEISEQ 410 >gi|312875712|ref|ZP_07735708.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF 2053A-b] gi|311088763|gb|EFQ47211.1| site-specific tyrosine recombinase XerS [Lactobacillus iners LEAF 2053A-b] Length = 363 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMM 50 TT H LRHS T + + D+ ++ + LGH+ LS T Y N +RM+ Sbjct: 309 TTPHKLRHSLGTEIYNKSMDVVAVATQLGHTGLSATDQYIQQANKEKQRMI 359 >gi|254473350|ref|ZP_05086747.1| phage integrase family protein, putative [Pseudovibrio sp. JE062] gi|211957466|gb|EEA92669.1| phage integrase family protein, putative [Pseudovibrio sp. JE062] Length = 335 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMME 51 H LR + +HL +G DL I ILGH+ L+TT+ Y +++S R+ + Sbjct: 277 HDLRQTEGSHLRLSGVDLADIADILGHADLTTTRRHYAHLDSARLRD 323 >gi|206580735|ref|YP_002237616.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206569793|gb|ACI11569.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 308 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%) Query: 6 HTLRHSFATHLLS----NGGDLR----SIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA H L+ NG D++ + LGH L TQ+Y ++ + + E Sbjct: 240 HDLRHSFAVHRLTSWYRNGDDVQLLLPQLSVYLGHVHLRATQVYLSMTPELLEE 293 >gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753] gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753] Length = 419 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H LRH+F T L +G D+ + + +GHS + TT IYT++ N+ + Y +T Sbjct: 350 TPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLGIYTHLDKEHKRNAVSKLNEYIET 409 Query: 57 HPS 59 H S Sbjct: 410 HAS 412 >gi|153971681|ref|YP_001393182.1| putative site-specific recombinase [Vibrio vulnificus] gi|152955166|emb|CAL25516.1| putative site-specific recombinase [Vibrio vulnificus] Length = 198 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 ++H+ R S+ T + + G +LR+IQ LGHS S T Y +V ++M+ Sbjct: 144 CSSHSGRRSYGTSMNALGVELRAIQCALGHSDPSMTLEYIDVLDSQLMK 192 >gi|298206679|ref|YP_003714858.1| tyrosine type site-specific recombinase [Croceibacter atlanticus HTCC2559] gi|83849310|gb|EAP87178.1| tyrosine type site-specific recombinase [Croceibacter atlanticus HTCC2559] Length = 405 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+FAT L+NG + + ++ H+ + TQ+Y + S + D+ Sbjct: 353 HISRHTFATRALNNGMRIEHVSKLMDHTDIGITQVYAKIISSELDNAVDK 402 >gi|77405276|ref|ZP_00782372.1| integrase-like protein [Streptococcus agalactiae H36B] gi|77176071|gb|EAO78844.1| integrase-like protein [Streptococcus agalactiae H36B] Length = 380 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT++ K I D Sbjct: 324 TSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKKMKSNIAD 375 >gi|319902354|ref|YP_004162082.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417385|gb|ADV44496.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 400 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RH +AT L NG + +I LGHS T+IY Sbjct: 344 HAARHCWATMALDNGTPIHTISECLGHSSEKVTKIY 379 >gi|315193402|gb|EFU23799.1| integrase, phage family, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 348 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348 >gi|257469562|ref|ZP_05633654.1| phage integrase family protein [Fusobacterium ulcerans ATCC 49185] gi|317063801|ref|ZP_07928286.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689477|gb|EFS26312.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 355 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRHS A+ L +NG D+ +I LGH + TT + YT++ K E+ Sbjct: 301 HDLRHSHASFLFNNGIDIITIALRLGHEEVQTTLETYTHLYKKANTEL 348 >gi|228912100|ref|ZP_04075819.1| Phage integrase [Bacillus thuringiensis IBL 200] gi|228847544|gb|EEM92479.1| Phage integrase [Bacillus thuringiensis IBL 200] Length = 385 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H RH+ A HLL +G +L+ + LGHS + T Sbjct: 319 TLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMT 353 >gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] Length = 391 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+FAT L++ +++Q +LGH + T IYT++N K Sbjct: 332 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKK 377 >gi|300361345|ref|ZP_07057522.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] gi|300353964|gb|EFJ69835.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] Length = 394 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+F T L+ N +++Q +LGH+ + T IYT+VN+K Sbjct: 335 TLHRFRHTFTTLLIENTNVKPKTVQMLLGHANIQMTLDIYTHVNNK 380 >gi|239828409|ref|YP_002951033.1| integrase [Geobacillus sp. WCH70] gi|239808702|gb|ACS25767.1| integrase family protein [Geobacillus sp. WCH70] Length = 292 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H RH+FAT LL G DL ++ + GHS ++ T Sbjct: 241 HLFRHTFATRLLRKGVDLTTVSKLTGHSTVNMT 273 >gi|332749399|gb|EGJ79817.1| phage integrase family protein [Shigella flexneri 4343-70] gi|332996513|gb|EGK16139.1| phage integrase family protein [Shigella flexneri K-218] Length = 198 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ L G D R IQ LG+ + T YT N+ R ++++ + I + Sbjct: 133 THPHMLRHACGYELAERGADTRLIQDYLGNRNIRHTVRYTASNAARFAGLWERNNL-INE 191 Query: 63 KDKK 66 K K+ Sbjct: 192 KLKR 195 >gi|325299221|ref|YP_004259138.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318774|gb|ADY36665.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 369 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+F T +++ G ++++ S+ GHS T+ Y ++ K+M + D Sbjct: 314 HCARHTFITLIMARGANIKTAASLAGHSSTRHTEKYIHIIDKQMQQAVD 362 >gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 398 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H++RHS A+ L++ G D+ ++ + LGHS +TT IYT+ Sbjct: 331 HSMRHSHASILIAAGVDVATVSADLGHSNCNTTLGIYTH 369 >gi|302875302|ref|YP_003843935.1| integrase family protein [Clostridium cellulovorans 743B] gi|307688153|ref|ZP_07630599.1| integrase family protein [Clostridium cellulovorans 743B] gi|302578159|gb|ADL52171.1| integrase family protein [Clostridium cellulovorans 743B] Length = 391 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+FAT L S G + +LGHS + T +IY +V Sbjct: 336 HALRHTFATQLFSKGIPTEVVSKLLGHSDPALTRKIYIHV 375 >gi|228963001|ref|ZP_04124209.1| Phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796655|gb|EEM44056.1| Phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 385 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H RH+ A HLL +G +L+ + LGHS + T Sbjct: 319 TLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMT 353 >gi|239630751|ref|ZP_04673782.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527034|gb|EEQ66035.1| site-specific recombinase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 385 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RHSF ++LL G + S+Q ++GH+ + T +Y +V++K+ E Sbjct: 326 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 374 >gi|254298753|ref|ZP_04966204.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e] gi|157808730|gb|EDO85900.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e] Length = 195 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 142 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 194 >gi|332885110|gb|EGK05362.1| hypothetical protein HMPREF9456_02861 [Dysgonomonas mossii DSM 22836] Length = 414 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH +A+ + LS G L ++ +LGH+ +T+IY V++ ++ E Sbjct: 341 TFHMARHCYASVVTLSQGVPLETVAELLGHTDWRSTRIYAQVSNDKIGE 389 >gi|317052781|ref|YP_004119547.1| integrase family protein [Pantoea sp. At-9b] gi|316953521|gb|ADU72991.1| integrase family protein [Pantoea sp. At-9b] Length = 287 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T R SFA HL+ + + IQ+++GH +T+ YT V Sbjct: 217 TPKTFRDSFAMHLVQHQVPQKVIQTLMGHKDAKSTEWYTRV 257 >gi|291525641|emb|CBK91228.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 399 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+F +++ +G + + +Q I+GHS +S T YT+V + E + + Sbjct: 343 TPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQK 395 >gi|229829078|ref|ZP_04455147.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM 14600] gi|229792241|gb|EEP28355.1| hypothetical protein GCWU000342_01163 [Shuttleworthia satelles DSM 14600] Length = 360 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LR ++ T L GD+R + +LGH ++TT Y Sbjct: 294 TPHKLRSTYGTALYRETGDIRLVADVLGHENINTTIDY 331 >gi|186477137|ref|YP_001858607.1| integrase family protein [Burkholderia phymatum STM815] gi|184193596|gb|ACC71561.1| integrase family protein [Burkholderia phymatum STM815] Length = 208 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH+++ +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKIESTVRYLGIEVDDALEMAEQTE 207 >gi|66395222|ref|YP_239518.1| ORF007 [Staphylococcus phage 187] gi|257793770|ref|ZP_05642749.1| phage integrase [Staphylococcus aureus A9781] gi|258420984|ref|ZP_05683915.1| phage integrase [Staphylococcus aureus A9719] gi|282919710|ref|ZP_06327442.1| integrase [Staphylococcus aureus subsp. aureus C427] gi|283771025|ref|ZP_06343916.1| integrase [Staphylococcus aureus subsp. aureus H19] gi|62635574|gb|AAX90685.1| ORF007 [Staphylococcus phage 187] gi|257787742|gb|EEV26082.1| phage integrase [Staphylococcus aureus A9781] gi|257842932|gb|EEV67350.1| phage integrase [Staphylococcus aureus A9719] gi|282316348|gb|EFB46725.1| integrase [Staphylococcus aureus subsp. aureus C427] gi|283459619|gb|EFC06710.1| integrase [Staphylococcus aureus subsp. aureus H19] Length = 348 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348 >gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 336 Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 23/42 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HT RHS A HLL +G D+ I LGH +TT Y + Sbjct: 261 SPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYLQAD 302 >gi|332085585|gb|EGI90750.1| resolvase [Shigella boydii 3594-74] Length = 213 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L + + IQ++ GH + ++YT V Sbjct: 139 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 182 >gi|302670790|ref|YP_003830750.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316] gi|302395263|gb|ADL34168.1| tyrosine recombinase XerC1 [Butyrivibrio proteoclasticus B316] Length = 353 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 22/36 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LR +F T+L GD+ + +LGH ++TT+ Sbjct: 296 TPHKLRSTFGTNLYQESGDIYLVADVLGHKDVNTTR 331 >gi|258509880|ref|YP_003172631.1| phage-related integrase [Lactobacillus rhamnosus GG] gi|257149807|emb|CAR88780.1| Phage-related integrase [Lactobacillus rhamnosus GG] gi|259651144|dbj|BAI43306.1| phage integrase [Lactobacillus rhamnosus GG] Length = 385 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RHSF ++LL G + S+Q ++GH+ + T +Y +V++K+ E Sbjct: 326 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 374 >gi|229551179|ref|ZP_04439904.1| phage integrase [Lactobacillus rhamnosus LMS2-1] gi|229315471|gb|EEN81444.1| phage integrase [Lactobacillus rhamnosus LMS2-1] Length = 385 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RHSF ++LL G + S+Q ++GH+ + T +Y +V++K+ E Sbjct: 326 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 374 >gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 392 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A++ +S G ++ + +LGH+++ TT Y ++ Sbjct: 323 HDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHL 361 >gi|66396202|ref|YP_240566.1| ORF011 [Staphylococcus phage 29] gi|118430725|ref|YP_873950.1| integrase [Staphylococcus phage phiNM] gi|151222026|ref|YP_001332848.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman] gi|297590072|ref|ZP_06948712.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|304379060|ref|ZP_07361807.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|62636619|gb|AAX91730.1| ORF011 [Staphylococcus phage 29] gi|104641617|gb|ABF73031.1| integrase [Staphylococcus aureus phage phiNM1] gi|150374826|dbj|BAF68086.1| phage integrase [Staphylococcus aureus subsp. aureus str. Newman] gi|297577200|gb|EFH95914.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|304342295|gb|EFM08187.1| integrase [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 348 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348 >gi|300775609|ref|ZP_07085470.1| phage integrase family site-specific recombinase [Chryseobacterium gleum ATCC 35910] gi|300505636|gb|EFK36773.1| phage integrase family site-specific recombinase [Chryseobacterium gleum ATCC 35910] Length = 384 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMME 51 ++ ++ +H A L G DL++I I GHS T++Y N +NS R E Sbjct: 324 INVKCYSFKHKGANDKLKAGMDLKTISEIFGHSDEKITELYANHINSIRFEE 375 >gi|254518466|ref|ZP_05130522.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226912215|gb|EEH97416.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 214 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LR ++AT L + +L ++ LGH + TT++Y +N + Sbjct: 158 SGHSLRKTYATRLWESTRNLEYVRIALGHKSIETTKVYLGLNDE 201 >gi|167754640|ref|ZP_02426767.1| hypothetical protein CLORAM_00143 [Clostridium ramosum DSM 1402] gi|167705472|gb|EDS20051.1| hypothetical protein CLORAM_00143 [Clostridium ramosum DSM 1402] Length = 104 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RHS AT +L D+ ++ LGH + T Y +VN+K E+ + I ++K Sbjct: 4 HGFRHSHATMMLEITNDVYNVSKRLGHENIEITDTYLHVNNKIQREMAQKIEDVIKSEEK 63 >gi|149185791|ref|ZP_01864106.1| phage integrase family protein [Erythrobacter sp. SD-21] gi|148830352|gb|EDL48788.1| phage integrase family protein [Erythrobacter sp. SD-21] Length = 61 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 32/52 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + A+ + G++R+IQ +LGHS++ T Y V+ + + + ++T Sbjct: 9 HSLRRTKASIIYKATGNIRAIQILLGHSKIENTVRYLGVDIEDALTLAEKTE 60 >gi|330719212|ref|ZP_08313812.1| prophage integrase [Leuconostoc fallax KCTC 3537] Length = 373 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH++AT L G ++ +Q+ LGH+ S T +Y+++ + Sbjct: 317 HKLRHTWATLALDRGATVKQVQTYLGHADASITLNVYSDITKR 359 >gi|325273253|ref|ZP_08139531.1| site-specific recombinase, phage integrase family protein [Pseudomonas sp. TJI-51] gi|324101584|gb|EGB99152.1| site-specific recombinase, phage integrase family protein [Pseudomonas sp. TJI-51] Length = 402 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA++L G L +I+ +LGH+ L T Y ++ Sbjct: 352 HDLRHTFASNLAMKGVPLNTIRDLLGHADLKMTLRYAHL 390 >gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] Length = 372 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT L++ G D+ ++ LGHS +STT Sbjct: 313 HNLRHTNATWLINQGVDIATVSRRLGHSNISTT 345 >gi|296169376|ref|ZP_06851000.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895965|gb|EFG75656.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 205 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L G +L +IQ + GH+ +TT Y +V++ + + + Sbjct: 147 TPHVLRHFCASQLYLGGMNLFAIQELCGHAWTATTARYIHVHATHVEDAW 196 >gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 361 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS A+ + ++G L I ++LGH TT+ Y ++ + E+ T Sbjct: 302 HDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQAAHELVQGT 352 >gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] Length = 383 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H RH+ A+ L G ++ +Q+ LGH TT IYT+V K+ Sbjct: 324 TVHGFRHTSASMLFEAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQ 369 >gi|255657789|ref|ZP_05403198.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544] gi|260849979|gb|EEX69986.1| tyrosine recombinase XerD [Mitsuokella multacida DSM 20544] Length = 265 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 AH+LR FA L NG ++ IQ + H+ ++TT Y N++ + +I + + Sbjct: 209 AHSLRRYFANTLSRNGIPVQDIQVAMRHASITTTMGYLNIDEDKTRDILREVY 261 >gi|19343452|ref|NP_061591.2| integrase [Staphylococcus prophage phiPV83] Length = 348 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|29028564|ref|NP_803254.1| integrase [Staphylococcus phage 11] gi|88195772|ref|YP_500581.1| phage family integrase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|166159|gb|AAA32198.1| integrase (int) [Staphylococcus phage 11] gi|18920488|gb|AAL82229.1| integrase [Staphylococcus phage 11] gi|87203330|gb|ABD31140.1| integrase, phage family, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329728609|gb|EGG65039.1| site-specific recombinase, phage integrase family [Staphylococcus aureus subsp. aureus 21189] Length = 348 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|323439162|gb|EGA96890.1| hypothetical protein SAO11_2000 [Staphylococcus aureus O11] Length = 348 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|239905519|ref|YP_002952258.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795383|dbj|BAH74372.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 362 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + +RH FAT LL GGD+ ++ ++GH+ + T Sbjct: 287 YDIRHLFATTLLREGGDVAAVSKLMGHASVKMT 319 >gi|221369879|ref|YP_002520975.1| integrase [Rhodobacter sphaeroides KD131] gi|221162931|gb|ACM03902.1| integrase [Rhodobacter sphaeroides KD131] Length = 332 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 T HTLRH+ A H+ G + I LGHS + T+ +Y + + + + D Sbjct: 270 TLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321 >gi|191639820|ref|YP_001988986.1| Phage integrase [Lactobacillus casei BL23] gi|190714122|emb|CAQ68128.1| Phage integrase [Lactobacillus casei BL23] gi|327383931|gb|AEA55407.1| Phage integrase [Lactobacillus casei LC2W] gi|327387112|gb|AEA58586.1| Phage integrase [Lactobacillus casei BD-II] Length = 289 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RHSF ++LL G + S+Q ++GH+ + T +Y +V++K+ E Sbjct: 230 TIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESE 278 >gi|295426011|ref|ZP_06818685.1| phage integrase family integrase/recombinase [Lactobacillus amylolyticus DSM 11664] gi|295064327|gb|EFG55261.1| phage integrase family integrase/recombinase [Lactobacillus amylolyticus DSM 11664] Length = 364 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 21/39 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 TT H LRHS T L D+ + S LGH+ +S T Y Sbjct: 309 TTPHKLRHSLGTELYDESKDVMVVASQLGHTGISATDQY 347 >gi|288801960|ref|ZP_06407401.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica D18] gi|288335395|gb|EFC73829.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica D18] Length = 281 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L DL + ++GH + TT+IY + +I ++ Sbjct: 228 HSFRHRFAKNFLDRFNDLALLADLMGHESIETTRIYLRRTASEQQKIVNR 277 >gi|284048402|ref|YP_003398741.1| integrase family protein [Acidaminococcus fermentans DSM 20731] gi|283952623|gb|ADB47426.1| integrase family protein [Acidaminococcus fermentans DSM 20731] Length = 432 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH++ T++ +G +++Q ++GHS +S T +YT++ Sbjct: 347 TPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLNVYTHI 388 >gi|253568142|ref|ZP_04845553.1| LOW QUALITY PROTEIN: integrase [Bacteroides sp. 1_1_6] gi|251842215|gb|EES70295.1| LOW QUALITY PROTEIN: integrase [Bacteroides sp. 1_1_6] Length = 245 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS L+ T+ Y Sbjct: 185 TTYTARHSFATVLKRGGAKTSYISESLGHSNLTVTENY 222 >gi|225388779|ref|ZP_03758503.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme DSM 15981] gi|225045161|gb|EEG55407.1| hypothetical protein CLOSTASPAR_02515 [Clostridium asparagiforme DSM 15981] Length = 285 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA DL + ILGH+ +STT+IYT Sbjct: 230 HNLRHLFARTYYMLEKDLSRLADILGHTNVSTTRIYT 266 >gi|198276566|ref|ZP_03209097.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135] gi|198270654|gb|EDY94924.1| hypothetical protein BACPLE_02762 [Bacteroides plebeius DSM 17135] Length = 201 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + RM+ Sbjct: 155 TYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYA--RAPRMV 200 >gi|160700678|ref|YP_001552358.1| gp29 [Mycobacterium phage Giles] gi|159136628|gb|ABW88424.1| gp29 [Mycobacterium phage Giles] gi|302749835|gb|ADL66924.1| Int [Cloning vector pGH1000A::zeo-ID] Length = 397 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HTLRH+ A +L G +R++ ILGHS ++ T Sbjct: 333 HTLRHAAAVAMLEAGIHIRAVADILGHSSVAVT 365 >gi|66396343|ref|YP_240703.1| ORF010 [Staphylococcus phage 88] gi|62636758|gb|AAX91869.1| ORF010 [Staphylococcus phage 88] Length = 348 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMNIFD 348 >gi|76788652|ref|YP_329239.1| prophage LambdaSa03, site-specific recombinase phage integrase family protein [Streptococcus agalactiae A909] gi|76563709|gb|ABA46293.1| prophage LambdaSa03, site-specific recombinase, phage integrase family [Streptococcus agalactiae A909] Length = 380 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT++ K I D Sbjct: 324 TSHIFRHTLVSRLAENNVPLKAIMDRVGHADAKTTVQIYTHITKKMKSNIAD 375 >gi|220928269|ref|YP_002505178.1| integrase family protein [Clostridium cellulolyticum H10] gi|219998597|gb|ACL75198.1| integrase family protein [Clostridium cellulolyticum H10] Length = 378 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 9/53 (16%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57 H LRH+FA+ G +L I LGHS++ TT QIYT+ ++D TH Sbjct: 320 HDLRHTFASIANELGTNLYDISKALGHSQVGTTSQIYTH--------MFDATH 364 >gi|298695214|gb|ADI98436.1| prophage integrase [Staphylococcus aureus subsp. aureus ED133] Length = 348 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017] gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017] Length = 400 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH+ AT LL+ G D++ IQ L H S ++T+ IY +V Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384 >gi|282857759|ref|ZP_06266968.1| integrative genetic element Ppu40, integrase [Pyramidobacter piscolens W5455] gi|282584429|gb|EFB89788.1| integrative genetic element Ppu40, integrase [Pyramidobacter piscolens W5455] Length = 336 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+ A+ L+ G L S+ LGH L TT+ Y ++ Sbjct: 285 HILRHTCASRLVQKGAPLYSVAKWLGHRNLMTTRRYAHL 323 >gi|270293691|ref|ZP_06199893.1| integrase [Bacteroides sp. D20] gi|270275158|gb|EFA21018.1| integrase [Bacteroides sp. D20] Length = 370 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 26/41 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+ R ++AT + G D+R+IQS + H ++TTQ Y V Sbjct: 313 TFHSYRRTYATLQGAAGTDIRTIQSNMAHRSITTTQRYMKV 353 >gi|4098413|gb|AAD00268.1| putative integrase [Leuconostoc phage 10MC] Length = 348 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LRHS A++LLS G ++ + LGHS + T+ Sbjct: 287 VTFHALRHSHASYLLSKGVSIQYVSERLGHSNVGITE 323 >gi|26989021|ref|NP_744446.1| integrative genetic element Ppu40, integrase [Pseudomonas putida KT2440] gi|24983844|gb|AAN67910.1|AE016423_5 integrative genetic element Ppu40, integrase [Pseudomonas putida KT2440] Length = 274 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 28/46 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ A+ L+ G L S+Q +GH ++TT Y ++ + +M+ Sbjct: 197 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQ 242 >gi|16799149|ref|NP_469417.1| hypothetical protein lin0071 [Listeria innocua Clip11262] gi|16412491|emb|CAC95304.1| lin0071 [Listeria innocua Clip11262] Length = 400 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH+ AT LL+ G D++ IQ L H S ++T+ IY +V Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384 >gi|330718740|ref|ZP_08313340.1| phage integrase [Leuconostoc fallax KCTC 3537] Length = 400 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 5 AHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+F+T G + R I +ILGHS+L + Y N Sbjct: 344 PHKLRHAFSTIAFGIEGINPRDIANILGHSKLDMSMFYNN 383 >gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii] gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii] Length = 356 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 22/38 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+ AT ++ G DL +Q ILGH TQ Y + Sbjct: 282 HDLRHTSATRMVQAGVDLYKVQRILGHKSPMMTQRYAH 319 >gi|297619031|ref|YP_003707136.1| integrase family protein [Methanococcus voltae A3] gi|297378008|gb|ADI36163.1| integrase family protein [Methanococcus voltae A3] Length = 317 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H++RH +LL+ G +L + +GH+R+ TT IY + N +R E Sbjct: 264 HSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYAH-NRERTNE 308 >gi|297618999|ref|YP_003707104.1| integrase family protein [Methanococcus voltae A3] gi|297377976|gb|ADI36131.1| integrase family protein [Methanococcus voltae A3] Length = 317 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H++RH +LL+ G +L + +GH+R+ TT IY + N +R E Sbjct: 264 HSIRHGCCVNLLTKGVNLDEVSRYMGHNRVETTMIYAH-NRERTNE 308 >gi|219847773|ref|YP_002462206.1| integrase family protein [Chloroflexus aggregans DSM 9485] gi|219542032|gb|ACL23770.1| integrase family protein [Chloroflexus aggregans DSM 9485] Length = 380 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T HT RH HLL+ G L + IL H + T+ Y + ++ E++DQ Sbjct: 317 TPHTFRHFVGYHLLNEGVALAEVSQILRHRSVEVTRSFYASYADVQLQEVHDQ 369 >gi|83816860|ref|YP_446966.1| tyrosine recombinase XerD [Salinibacter ruber DSM 13855] gi|83758254|gb|ABC46366.1| tyrosine recombinase XerD [Salinibacter ruber DSM 13855] Length = 46 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 22/34 (64%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 L + G +R +Q LGHS LSTT IYT+V + + Sbjct: 6 LATPAGKIRLVQKALGHSDLSTTMIYTHVVDEEL 39 >gi|331660301|ref|ZP_08361236.1| resolvase (Protein D) [Escherichia coli TA206] gi|331052568|gb|EGI24604.1| resolvase (Protein D) [Escherichia coli TA206] Length = 59 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 22/30 (73%) Query: 15 HLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+L G L+ +QS++GH +S+T++YT V Sbjct: 2 HMLYAGIPLKVLQSLMGHKSISSTEVYTKV 31 >gi|307728759|ref|YP_003905983.1| integrase family protein [Burkholderia sp. CCGE1003] gi|307583294|gb|ADN56692.1| integrase family protein [Burkholderia sp. CCGE1003] Length = 208 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + A+ + +LR++Q +LGH+++ +T Y + +E+ +QT Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKIESTVRYLGIEVDDALEMAEQTE 207 >gi|149916292|ref|ZP_01904812.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809746|gb|EDM69598.1| Integrase [Roseobacter sp. AzwK-3b] Length = 157 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 30/47 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R ++ T L + G +R + + GHS +STTQ Y +VN +++ Sbjct: 104 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNVEQL 150 >gi|119898597|ref|YP_933810.1| putative tyrosine recombinase xerD [Azoarcus sp. BH72] gi|119671010|emb|CAL94923.1| putative Tyrosine recombinase xerD [Azoarcus sp. BH72] Length = 204 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++R + AT + +LR++Q +LGHS+L +T Y + +EI +Q Sbjct: 153 SMRRTKATLIYKRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQ 201 >gi|66395303|ref|YP_239598.1| ORF010 [Staphylococcus phage 69] gi|62635654|gb|AAX90765.1| ORF010 [Staphylococcus phage 69] Length = 348 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|312868643|ref|ZP_07728837.1| site-specific recombinase, phage integrase family [Lactobacillus oris PB013-T2-3] gi|311095852|gb|EFQ54102.1| site-specific recombinase, phage integrase family [Lactobacillus oris PB013-T2-3] Length = 282 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSIT 61 H+LRHS LL+ G D+ +I LGHS +TT QIY + + E DQT I Sbjct: 224 HSLRHSHVALLLAKGVDIYAISKRLGHSNTATTSQIYAYL----IDEYKDQTDNQIV 276 >gi|307704170|ref|ZP_07641094.1| hypothetical protein SMSK597_0188 [Streptococcus mitis SK597] gi|307622276|gb|EFO01289.1| hypothetical protein SMSK597_0188 [Streptococcus mitis SK597] Length = 73 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT G L +I L HS TTQIY N ++ M + + S+ Q Sbjct: 15 TPHKLRHTGATLAKKAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAVGEFALKSLKQ 73 >gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 267 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 302 >gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 318 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 266 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301 >gi|139439389|ref|ZP_01772830.1| Hypothetical protein COLAER_01849 [Collinsella aerofaciens ATCC 25986] gi|133775168|gb|EBA38988.1| Hypothetical protein COLAER_01849 [Collinsella aerofaciens ATCC 25986] Length = 368 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 20/33 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT L+ NG D RS Q LGH S T Sbjct: 189 HELRHTQATFLIGNGIDPRSAQGRLGHEVSSMT 221 >gi|327412744|emb|CAX67746.1| putative phage integrase [Yersinia enterocolitica] Length = 318 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 2 STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYT--NVNSKR 48 + + H RH+ AT ++ S +L+S+Q++LGHS ++ T Y ++NS R Sbjct: 260 TISPHRFRHTIATEMMKSPDRNLKSVQALLGHSSIAVTLEYIEEDINSLR 309 >gi|323441554|gb|EGA99204.1| hypothetical protein SAO46_2487 [Staphylococcus aureus O46] Length = 348 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|317481411|ref|ZP_07940478.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902396|gb|EFV24283.1| phage integrase [Bacteroides sp. 4_1_36] Length = 334 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Query: 6 HTLRHSFATHLLS----NGGDLRS----IQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH+FA H L NG DL + + + LGH LS+T+ Y + E Q Sbjct: 257 HDLRHTFAVHSLVQMGHNGMDLYTGLPILSACLGHRSLSSTEKYVRLTCMMYPEFEKQCS 316 Query: 58 P 58 P Sbjct: 317 P 317 >gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] Length = 331 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H R + AT + G + +Q +LGHS++ TT Y V+ Sbjct: 279 HKFRRTLATRAIDKGMPIEQVQQLLGHSKIDTTMEYAMVD 318 >gi|281424818|ref|ZP_06255731.1| integrase [Prevotella oris F0302] gi|299142384|ref|ZP_07035516.1| integrase [Prevotella oris C735] gi|281401188|gb|EFB32019.1| integrase [Prevotella oris F0302] gi|298576106|gb|EFI47980.1| integrase [Prevotella oris C735] Length = 143 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 23/35 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 H RH+F T LS G + SI ++GH+ +++TQI Sbjct: 109 HMARHTFGTLALSAGIPIESIAKMMGHASIASTQI 143 >gi|157324990|ref|YP_001468416.1| Int [Listeria phage A500] gi|66732998|gb|AAY52817.1| Int [Listeria phage A500] Length = 400 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH+ AT LL+ G D++ IQ L H S ++T+ IY +V Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384 >gi|22538023|ref|NP_688874.1| prophage LambdaSa2, site-specific recombinase phage integrase family protein [Streptococcus agalactiae 2603V/R] gi|22534925|gb|AAN00747.1|AE014276_28 prophage LambdaSa2, site-specific recombinase, phage integrase family [Streptococcus agalactiae 2603V/R] Length = 356 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H+LRH++A+ L+ NG D+ +I +LGH T ++YT+ Sbjct: 298 HSLRHTYASFLILNGVDIVTISKLLGHESPDITLKVYTH 336 >gi|88810862|ref|ZP_01126119.1| phage integrase family protein [Nitrococcus mobilis Nb-231] gi|88792492|gb|EAR23602.1| phage integrase family protein [Nitrococcus mobilis Nb-231] Length = 207 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + AT + +LR++Q +LGH++L +T + + +EI +QT Sbjct: 155 HSLRRTKATLIYRRTRNLRAVQLLLGHTKLESTIRHLGIEVDDALEIAEQT 205 >gi|325977450|ref|YP_004287166.1| tyrosine recombinase xerC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177378|emb|CBZ47422.1| Tyrosine recombinase xerC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 405 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 22/40 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT G L +I L HS +TTQIY N Sbjct: 347 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTATTQIYVN 386 >gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424] gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424] Length = 364 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 + H RH+ AT L +G D++ I + LGHS + TT +YT++ + ++ Sbjct: 305 SVHGFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKKKDV 354 >gi|332880984|ref|ZP_08448654.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681158|gb|EGJ54085.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 407 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHS+AT L +G ++ I LGH+ L TT+ Y Sbjct: 350 TTYTARHSYATVLKRSGVNISYISESLGHTDLRTTETY 387 >gi|189427123|ref|YP_001949799.1| integrase [Staphylococcus phage phiMR25] gi|221141449|ref|ZP_03565942.1| phage family integrase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|189339034|dbj|BAG48098.1| integrase [Staphylococcus phage phiMR25] gi|302751748|gb|ADL65925.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 348 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKR---MMEIYD 54 H LRHS+A++L++NG D+ + ++ HS ++ T Q Y+++ + + M I+D Sbjct: 296 HHLRHSYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD 348 >gi|39653675|ref|NP_945240.1| integrase [Streptococcus phage EJ-1] gi|38638843|emb|CAE82083.1| integrase [Streptococcus phage EJ-1] Length = 380 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNV 44 T+H RH+ + L N L++I +GHS +TTQIYT++ Sbjct: 324 TSHIFRHTLVSRLAENNVPLKAIMDRVGHSDAKTTTQIYTHI 365 >gi|150018431|ref|YP_001310685.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149904896|gb|ABR35729.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 654 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LRH+ A + G + IQ ILGH L T Y V+ + E + T Sbjct: 469 HSLRHTRAKEYVEQGMGISIIQQILGHQSLQMTVHYATVSENTLYEKWKDT 519 >gi|302670138|ref|YP_003830098.1| phage integrase family protein [Butyrivibrio proteoclasticus B316] gi|302394611|gb|ADL33516.1| phage integrase family protein [Butyrivibrio proteoclasticus B316] Length = 409 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH+ ++ + +G D+ I GHS +STT +IY N+ ++ M ++D Sbjct: 357 HGLRHTGISYYIRHGVDISLISRTAGHSDISTTMKIYYNIIEEQKMSMFD 406 >gi|296271734|ref|YP_003654365.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296095909|gb|ADG91859.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 366 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+HL G + +IQ ++ H + T Y + Sbjct: 315 HTLRHTFASHLAIKGTPIFTIQKLMNHRDIKMTLRYAKL 353 >gi|266620800|ref|ZP_06113735.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288867585|gb|EFC99883.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 285 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 23/41 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H +RH FA D+ + ILGHS + TT+IYT +S Sbjct: 231 HNMRHLFARTYYGKQKDIVHLADILGHSSIETTRIYTMTSS 271 >gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785] gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785] Length = 390 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+FAT L++ +++Q +LGH + T IYT++N K Sbjct: 331 TVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHINKK 376 >gi|253734958|ref|ZP_04869123.1| transposase [Staphylococcus aureus subsp. aureus TCH130] gi|253727140|gb|EES95869.1| transposase [Staphylococcus aureus subsp. aureus TCH130] Length = 675 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521 >gi|229551512|ref|ZP_04440237.1| site-specific recombinase, phage integrase family protein [Lactobacillus rhamnosus LMS2-1] gi|229315121|gb|EEN81094.1| site-specific recombinase, phage integrase family protein [Lactobacillus rhamnosus LMS2-1] Length = 420 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H +RH+F+T G + I S L HS +STT+ Y N Sbjct: 351 HKMRHTFSTLARQGGASMEDISSALTHSNVSTTRTYVN 388 >gi|212640281|ref|YP_002316801.1| phage integrase family protein [Anoxybacillus flavithermus WK1] gi|212561761|gb|ACJ34816.1| Phage integrase family protein [Anoxybacillus flavithermus WK1] Length = 107 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 + H LRHS A HLL G +++ + LGH+ + T Y +V K Sbjct: 47 SPHALRHSHAVHLLEAGANIKYVFERLGHASIKMTADTYLHVTKK 91 >gi|196247964|ref|ZP_03146666.1| integrase family protein [Geobacillus sp. G11MC16] gi|196212748|gb|EDY07505.1| integrase family protein [Geobacillus sp. G11MC16] Length = 179 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H LRH+ AT L+ G ++ + ILGHSR+ T + + +++ MM Sbjct: 120 TLHGLRHTAATLLMKLGVHVKIVSDILGHSRVQVTLDFYSHSNEEMM 166 >gi|167461311|ref|ZP_02326400.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381332|ref|ZP_08055335.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154908|gb|EFX47179.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 187 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRH+ AT LL G L+ IQ GH+ TT IY++V +KR+ E Sbjct: 126 HDLRHTVATLLLEEGVRLKVIQERHGHANYQTTADIYSHV-TKRLTE 171 >gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043] gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 374 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 26/38 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + T H LRH+ A+ +++G +++++Q +LGH+ + T Sbjct: 291 VGVTPHDLRHTAASLAIASGANVKAVQQMLGHASAAMT 328 >gi|254994439|ref|ZP_05276629.1| bacteriophage integrase [Listeria monocytogenes FSL J2-064] Length = 286 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|255588021|ref|XP_002534478.1| conserved hypothetical protein [Ricinus communis] gi|223525226|gb|EEF27908.1| conserved hypothetical protein [Ricinus communis] Length = 157 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT+R + A+ + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 105 HTMRRTKASLIYRRTRNLRAVQLLLGHTKLESTVRYLGIEVDDALELAEQT 155 >gi|319788899|ref|YP_004090214.1| integrase family protein [Ruminococcus albus 7] gi|315450766|gb|ADU24328.1| integrase family protein [Ruminococcus albus 7] Length = 268 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH +A + L D+ + ++GH + TT+IY + I D+ Sbjct: 215 HSFRHRYAKNFLEKYNDIALLADLMGHESIETTRIYLRKTASEQQAIVDK 264 >gi|254721127|ref|ZP_05182918.1| phage integrase [Bacillus anthracis str. A1055] Length = 381 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T+ +Y++++ K Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363 >gi|167043113|gb|ABZ07823.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_ANIW141I9] Length = 359 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LR +FA D+ + LGHS + T+ Y N N +R+ HPS+ Q Sbjct: 292 HNLRDTFAVMRYLETRDIYQVSKELGHSSVKVTEKYANFNIRRL----QMDHPSLGQ 344 >gi|190151416|ref|YP_001974327.1| putative integrase [Streptococcus phage PH15] gi|190014410|emb|CAQ57796.1| hypothetical protein [Streptococcus phage PH15] Length = 355 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H+LRH++A++L+ G D+ +I +LGH + I V S +M + D+ I + Sbjct: 297 HSLRHTYASYLILKGIDIVTISKLLGH---ESPDITLKVYSHQMEALADKNFEQIKE 350 >gi|126666486|ref|ZP_01737465.1| Site-specific recombinase XerC [Marinobacter sp. ELB17] gi|126629287|gb|EAZ99905.1| Site-specific recombinase XerC [Marinobacter sp. ELB17] Length = 100 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48 H LRH+ A+ + +G D+R I LGH+ + T+ +Y N + R Sbjct: 47 HYLRHTGASQAIESGADIRHISEELGHASAAFTESVYVNSDQAR 90 >gi|52141786|ref|YP_085044.1| phage integrase [Bacillus cereus E33L] gi|51975255|gb|AAU16805.1| phage integrase [Bacillus cereus E33L] Length = 381 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T+ +Y++++ K Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363 >gi|85708220|ref|ZP_01039286.1| phage integrase family protein [Erythrobacter sp. NAP1] gi|85689754|gb|EAQ29757.1| phage integrase family protein [Erythrobacter sp. NAP1] Length = 94 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 32/52 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + A+ + G++R+IQ +LGHS++ T Y V+ + + + ++T Sbjct: 42 HSLRRTKASIIYKATGNIRAIQILLGHSKIENTVRYLGVDIEDALTLAEKTE 93 >gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 344 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+F + G + ++Q I+GHS + TT +IYT+V Sbjct: 286 HLLRHTFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTHV 325 >gi|262406524|ref|ZP_06083073.1| integrase [Bacteroides sp. 2_1_22] gi|262355227|gb|EEZ04318.1| integrase [Bacteroides sp. 2_1_22] Length = 318 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 253 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291 >gi|258654606|ref|YP_003203762.1| integrase [Nakamurella multipartita DSM 44233] gi|258557831|gb|ACV80773.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 422 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIY 41 T H LRH+ A + + L +Q +LGH+ LSTTQIY Sbjct: 331 TLHDLRHTAAYRMARDPLVPLTDVQWVLGHAHLSTTQIY 369 >gi|253577888|ref|ZP_04855160.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850206|gb|EES78164.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 226 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 H LRH+ + + G D R++Q I+GH+ + T ++Y +V +R+ Sbjct: 168 PHLLRHTSCSRMAEAGVDPRTLQDIMGHASMKMTMELYNHVTDERL 213 >gi|226223149|ref|YP_002757256.1| bacteriophage integrase [Listeria monocytogenes Clip81459] gi|225875611|emb|CAS04314.1| Putative bacteriophage integrase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 309 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + T H+LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 246 TITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQ 283 >gi|29293004|gb|AAO73844.1|AF335469_1 FotS [Escherichia coli] Length = 199 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 23/48 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ +L G D R IQ LGH + T YT N +R + Sbjct: 134 HMLRHACGFNLAERGNDTRLIQDYLGHRNIRHTVHYTASNPERFRNAW 181 >gi|298207372|ref|YP_003715551.1| integrase [Croceibacter atlanticus HTCC2559] gi|83850008|gb|EAP87876.1| integrase [Croceibacter atlanticus HTCC2559] Length = 406 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHSFAT L +G ++ I +LGHS +S T+ Y Sbjct: 345 TTYFARHSFATILKRSGANISMISDLLGHSDVSVTESY 382 >gi|237714658|ref|ZP_04545139.1| integrase [Bacteroides sp. D1] gi|294646088|ref|ZP_06723751.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809744|ref|ZP_06768430.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445427|gb|EEO51218.1| integrase [Bacteroides sp. D1] gi|292638532|gb|EFF56887.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443042|gb|EFG11823.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 317 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|260586976|ref|ZP_05852889.1| transposase [Blautia hansenii DSM 20583] gi|260542660|gb|EEX23229.1| transposase [Blautia hansenii DSM 20583] Length = 149 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 T H RH++ T++ ++G + +++Q ++GHS +S T IYT Sbjct: 67 PVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYT 108 >gi|158318043|ref|YP_001510551.1| integrase family protein [Frankia sp. EAN1pec] gi|158113448|gb|ABW15645.1| integrase family protein [Frankia sp. EAN1pec] Length = 416 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+ AT + G D + IQ +LGH+ LSTT IY ++ Sbjct: 347 HALRHTAATMAYALGVDWKQIQQMLGHTMLSTTMDIYVDL 386 >gi|16263484|ref|NP_436277.1| hypothetical protein SMa1874 [Sinorhizobium meliloti 1021] gi|14524180|gb|AAK65689.1| Hypothetical protein SMa1874 [Sinorhizobium meliloti 1021] Length = 113 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H++R + H+ G+LR++Q +LGH +L +T Y + I +Q Sbjct: 61 HSMRRTKVAHIYKKTGNLRAVQLLLGHKKLESTVQYLGTEVDDALAISEQV 111 >gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7] gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7] Length = 378 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQ 55 T H LRH AT LL++G DL+ + LGH ++ T IY +V K +Q Sbjct: 320 TLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIYADVLRKTKARTAEQ 372 >gi|298481183|ref|ZP_06999377.1| integrase [Bacteroides sp. D22] gi|298272757|gb|EFI14324.1| integrase [Bacteroides sp. D22] Length = 317 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 253 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291 >gi|168485015|ref|ZP_02709953.1| integrase [Streptococcus pneumoniae CDC1873-00] gi|172041868|gb|EDT49914.1| integrase [Streptococcus pneumoniae CDC1873-00] Length = 388 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 T H RH+ A+ LL+ G + IQ+ LGH++LS T IY+++ N K Y++ Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNKKNATSFYEK 380 >gi|160943484|ref|ZP_02090717.1| hypothetical protein FAEPRAM212_00975 [Faecalibacterium prausnitzii M21/2] gi|158445163|gb|EDP22166.1| hypothetical protein FAEPRAM212_00975 [Faecalibacterium prausnitzii M21/2] Length = 466 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS AT+ LL +GGD +S+Q GH+ + Y + K +E+ ++ + Sbjct: 360 HGLRHSSATYQLLQSGGDFKSVQGNTGHATATVLMDTYAHTQDKPRLELAEKIEADFYSQ 419 Query: 64 D 64 D Sbjct: 420 D 420 >gi|58616707|ref|YP_195916.1| integrase/recombinase [Achromobacter xylosoxidans A8] gi|58416298|emb|CAI47894.1| integrase/recombinase [Achromobacter xylosoxidans] Length = 390 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ +HL S DL+ ++ LGH+ +STT IY Sbjct: 331 STHWIRHTAGSHL-SEKVDLKVVRDNLGHANISTTSIY 367 >gi|160937278|ref|ZP_02084640.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC BAA-613] gi|158439842|gb|EDP17591.1| hypothetical protein CLOBOL_02168 [Clostridium bolteae ATCC BAA-613] Length = 296 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 24/45 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H RH FA +L + ILGHS ++TT+IYT + + M Sbjct: 232 HNFRHLFARLYYEQEKNLVRLADILGHSNINTTRIYTMESGRNHM 276 >gi|119946209|ref|YP_943889.1| phage integrase family protein [Psychromonas ingrahamii 37] gi|119864813|gb|ABM04290.1| phage integrase family protein [Psychromonas ingrahamii 37] Length = 198 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + A+ + + +LR+IQ +LGHS+L +T Y V + + I + T Sbjct: 146 HSLRRTKASLIYAKTKNLRAIQLLLGHSKLESTIEYLGVEIEDALTISEATE 197 >gi|30908756|gb|AAP37610.1| IntI [uncultured bacterium] Length = 159 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 15/25 (60%), Positives = 18/25 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSI 26 T HTLRHS ATHLL G D+R++ Sbjct: 135 PATRHTLRHSVATHLLEAGYDIRTV 159 >gi|294776405|ref|ZP_06741883.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294449731|gb|EFG18253.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 418 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 22/41 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +H LRHS AT LLSN L I LGHS T Y V+ Sbjct: 351 SHILRHSLATSLLSNEVTLPVISETLGHSNSQVTTAYLRVS 391 >gi|254933695|ref|ZP_05267054.1| phage integrase [Listeria monocytogenes HPB2262] gi|293585259|gb|EFF97291.1| phage integrase [Listeria monocytogenes HPB2262] gi|332310427|gb|EGJ23522.1| Phage Integrase [Listeria monocytogenes str. Scott A] Length = 400 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH+ AT LL+ G D++ IQ L H S ++T+ IY +V Sbjct: 345 HDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHV 384 >gi|168483748|ref|ZP_02708700.1| integrase [Streptococcus pneumoniae CDC1873-00] gi|172042819|gb|EDT50865.1| integrase [Streptococcus pneumoniae CDC1873-00] Length = 388 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 T H RH+ A+ LL+ G + IQ+ LGH++LS T IY+++ N K Y++ Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNKKNATSFYEK 380 >gi|163740915|ref|ZP_02148308.1| phage integrase family protein [Phaeobacter gallaeciensis 2.10] gi|161385906|gb|EDQ10282.1| phage integrase family protein [Phaeobacter gallaeciensis 2.10] Length = 182 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + A + G+LR++Q +LGH+++ +T Y V + + I ++ Sbjct: 130 HSLRRTKAAEIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALSIAER 179 >gi|4204419|gb|AAD10711.1| Int44 [Oenococcus phage fOg44] gi|57281914|emb|CAD19155.1| Int44 protein [Oenococcus phage fOg44] Length = 364 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKR 48 S T H LRH+ A+ LL+NG ++ I LGH+ L T+ +Y++ + SKR Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITEKVYSHLLESKR 333 >gi|29348545|ref|NP_812048.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29340450|gb|AAO78242.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 403 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F +L+ + SI ++GH+ +++TQ+Y V +++ Sbjct: 336 HASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKI 379 >gi|60683655|ref|YP_213799.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|265767338|ref|ZP_06095004.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|60495089|emb|CAH09908.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|263252643|gb|EEZ24155.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 413 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59 + T + RHS+AT G + SI LGH+ +TTQIY + NS+ + +I +Q S Sbjct: 349 LVLTTYVARHSWATIAKEEGFSIASISEGLGHTSEATTQIYLQSFNSEVIDKINEQVVAS 408 Query: 60 I 60 I Sbjct: 409 I 409 >gi|332884385|gb|EGK04649.1| hypothetical protein HMPREF9456_03402 [Dysgonomonas mossii DSM 22836] Length = 417 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H+LRHS A+++L G L I LGHS +TQ Y ++ Sbjct: 350 PHSLRHSLASNMLKMGVSLNVISGSLGHSITQSTQTYLKID 390 >gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14] gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14] Length = 382 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ + T+ Y V Sbjct: 320 STHTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARV 361 >gi|295084055|emb|CBK65578.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 316 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|228967300|ref|ZP_04128335.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792335|gb|EEM39902.1| Phage integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 373 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 + H LRH+ A LL G +++ IQ LGH + T+ IY++V K Sbjct: 310 SVHGLRHTHAVLLLEAGVEMKYIQERLGHKNIEITSNIYSHVTPK 354 >gi|153807973|ref|ZP_01960641.1| hypothetical protein BACCAC_02259 [Bacteroides caccae ATCC 43185] gi|149129582|gb|EDM20796.1| hypothetical protein BACCAC_02259 [Bacteroides caccae ATCC 43185] Length = 241 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 174 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 212 >gi|37595878|ref|NP_932257.1| putative site-specific recombinase [Vibrio vulnificus YJ016] gi|37201961|dbj|BAC97780.1| putative site-specific recombinase [Vibrio vulnificus YJ016] Length = 223 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 ++HT R S+ T++ + G +L +IQ LGHS S T Y +++S Sbjct: 169 CSSHTGRRSYGTNMNAQGVELSAIQRALGHSEPSMTIEYIDISS 212 >gi|29826825|ref|NP_821459.1| hypothetical protein SAV_285 [Streptomyces avermitilis MA-4680] gi|29603922|dbj|BAC67994.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 132 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHS AT LL G DL I+ +LGH+ + T +Y ++ + + D ++ D Sbjct: 53 HNLRHSTATLLLEQGVDLVVIKELLGHAHIGVTATVYAHLRLRLQRDAIDLLGNALRNPD 112 Query: 65 K 65 + Sbjct: 113 E 113 >gi|319894064|gb|ADV76315.1| hypothetical protein [Streptococcus sp. F.MI.5] Length = 405 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|319400741|gb|EFV88963.1| phage integrase family protein [Staphylococcus epidermidis FRI909] Length = 675 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521 >gi|229111172|ref|ZP_04240729.1| Phage integrase [Bacillus cereus Rock1-15] gi|228672336|gb|EEL27623.1| Phage integrase [Bacillus cereus Rock1-15] Length = 381 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T+ +Y++++ K Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 363 >gi|149916277|ref|ZP_01904797.1| Integrase [Roseobacter sp. AzwK-3b] gi|149809731|gb|EDM69583.1| Integrase [Roseobacter sp. AzwK-3b] Length = 104 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 30/47 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R ++ T L + G +R + + GHS +STTQ Y +VN +++ Sbjct: 51 ASSHSGRRTYITRLANKGVGVRLLAELAGHSHISTTQRYIDVNVEQL 97 >gi|294645747|ref|ZP_06723433.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808331|ref|ZP_06767086.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292638953|gb|EFF57285.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444407|gb|EFG13119.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 317 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T RHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|260880928|ref|ZP_05403159.2| prophage LambdaBa02, site-specific recombinase, phage integrase family [Mitsuokella multacida DSM 20544] gi|260849940|gb|EEX69947.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Mitsuokella multacida DSM 20544] Length = 361 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYT 42 + LRH AT LL+NG D++++ LGH S ++T +YT Sbjct: 295 YDLRHFHATQLLANGVDIKTVSHRLGHTSPMTTLNVYT 332 >gi|260174671|ref|ZP_05761083.1| integrase [Bacteroides sp. D2] Length = 317 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|258648849|ref|ZP_05736318.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella tannerae ATCC 51259] gi|260850863|gb|EEX70732.1| putative nicotinate-nucleotide pyrophosphorylase [Prevotella tannerae ATCC 51259] Length = 334 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%) Query: 5 AHTLRHSFATHLL----SNGGD----LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA H L NG D L + LGH +LS T+ Y + + +I Q Sbjct: 255 VHDLRHTFAVHSLMHQVKNGADVYCTLPILAVFLGHKKLSDTETYVRLTQEMYSDILKQ 313 >gi|237715956|ref|ZP_04546437.1| integrase [Bacteroides sp. D1] gi|262407569|ref|ZP_06084117.1| integrase [Bacteroides sp. 2_1_22] gi|298483496|ref|ZP_07001672.1| integrase [Bacteroides sp. D22] gi|229443603|gb|EEO49394.1| integrase [Bacteroides sp. D1] gi|262354377|gb|EEZ03469.1| integrase [Bacteroides sp. 2_1_22] gi|298270253|gb|EFI11838.1| integrase [Bacteroides sp. D22] Length = 318 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T RHS+AT G + I LGH + TTQIY Sbjct: 253 VTSYTFRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291 >gi|237732963|ref|ZP_04563444.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383953|gb|EEO34044.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 396 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRH+F T L + +++Q I+GHS + T Sbjct: 341 TPHTLRHTFCTRLAQKNMNPKNLQYIMGHSNIMLT 375 >gi|225860049|ref|YP_002741558.1| integrase [Streptococcus pneumoniae Taiwan19F-14] gi|298229486|ref|ZP_06963167.1| integrase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255139|ref|ZP_06978725.1| integrase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501793|ref|YP_003723733.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A] gi|307126177|ref|YP_003878208.1| integrase [Streptococcus pneumoniae 670-6B] gi|225728040|gb|ACO23891.1| integrase [Streptococcus pneumoniae Taiwan19F-14] gi|298237388|gb|ADI68519.1| bacteriophage integrase [Streptococcus pneumoniae TCH8431/19A] gi|306483239|gb|ADM90108.1| integrase [Streptococcus pneumoniae 670-6B] Length = 388 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56 T H RH+ A+ LL+ G + IQ+ LGH++LS T IY+++ N K Y++ Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381 >gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083] gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083] Length = 422 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRHS A+H+ +G I + LGH +++TQ Y Sbjct: 362 HGLRHSLASHMAMDGASASEIMTALGHRDITSTQRY 397 >gi|189459809|ref|ZP_03008594.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136] gi|189433419|gb|EDV02404.1| hypothetical protein BACCOP_00438 [Bacteroides coprocola DSM 17136] Length = 413 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+N L+ + ++LGH+ TQ Y V + + + Sbjct: 354 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKD 402 >gi|322390783|ref|ZP_08064293.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 903] gi|321142453|gb|EFX37921.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 903] Length = 266 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEIYDQ 55 RH++ +HL G DL I ILGH +S ++Y + +++ E ++Q Sbjct: 210 RHTYGSHLWHKGFDLGVIAKILGHRDISMLVEVYGHTLEEKIFEEFNQ 257 >gi|311109777|ref|YP_003982629.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8] gi|310764466|gb|ADP19914.1| phage integrase family protein 7 [Achromobacter xylosoxidans A8] Length = 389 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H +RH+ +HL S DL+ ++ LGH+ +STT IY Sbjct: 330 STHWIRHTAGSHL-SEKVDLKVVRDNLGHANISTTSIY 366 >gi|300854836|ref|YP_003779820.1| putative tyrosine recombinase [Clostridium ljungdahlii DSM 13528] gi|300434951|gb|ADK14718.1| predicted tyrosine recombinase [Clostridium ljungdahlii DSM 13528] Length = 319 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 6 HTLRHSFATHLLSNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +T R++FAT + NG + + +Q +LGH+ + T+ Y N+ M E ++ +P Sbjct: 249 NTFRNTFATLFIKNGNNNIYLLQKLLGHADIRMTERYINLLPLEMKEDINKYNP 302 >gi|237732626|ref|ZP_04563107.1| transposase [Mollicutes bacterium D7] gi|229384294|gb|EEO34385.1| transposase [Coprobacillus sp. D7] Length = 177 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHS 33 H LRH+FAT + G +++ + ILGHS Sbjct: 118 HMLRHTFATMCIEGGFEIKCLSEILGHS 145 >gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36] gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36] gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1] gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1] gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1] gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1] Length = 359 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L +G L+ +Q LGH+ L TT IYT++ Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHI 341 >gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 318 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 266 HGLRATAATNALEHDADIAKVQIWLGHANISTTRLY 301 >gi|27468530|ref|NP_765167.1| transposition regulatory protein tnpB [Staphylococcus epidermidis ATCC 12228] gi|282919765|ref|ZP_06327497.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp. aureus C427] gi|27316077|gb|AAO05211.1|AE016749_157 transposition regulatory protein tnpB [Staphylococcus epidermidis ATCC 12228] gi|282316403|gb|EFB46780.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp. aureus C427] Length = 675 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521 >gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 332 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+FAT +LS G + + + ILGHS + T Y++V Sbjct: 276 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSHV 315 >gi|332560566|ref|ZP_08414884.1| integrase [Rhodobacter sphaeroides WS8N] gi|332274364|gb|EGJ19680.1| integrase [Rhodobacter sphaeroides WS8N] Length = 332 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 T HTLRH+ A H+ G + I LGHS + T+ +Y + + + + D Sbjct: 270 TLHTLRHTAAVHMAEAGVPMDEISQYLGHSNVQITSSVYARFSPQHLRKAAD 321 >gi|330997618|ref|ZP_08321463.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570146|gb|EGG51886.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 403 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F +L+ + SI ++GH+ +++TQ+Y V +++ Sbjct: 336 HASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKI 379 >gi|315922934|ref|ZP_07919174.1| integrase [Bacteroides sp. D2] gi|313696809|gb|EFS33644.1| integrase [Bacteroides sp. D2] Length = 318 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 253 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 291 >gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 387 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 + LRH+ AT L S + +I ++GH LSTT+IY + + Y+ + +I +D Sbjct: 321 YGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAIEEEKGIAYNIINDTIGGRD 379 >gi|295107261|emb|CBL04804.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 422 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 H LRH+FAT L+ +G + +++ + LGH+ S T +IY + + + + Sbjct: 317 HRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLKIYVSSSPENL 361 >gi|253566467|ref|ZP_04843920.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944639|gb|EES85114.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301165167|emb|CBW24737.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 413 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59 + T + RHS+AT G + SI LGH+ +TTQIY + NS+ + +I +Q S Sbjct: 349 LVLTTYVARHSWATIAKEEGFSIASISEGLGHTSEATTQIYLQSFNSEVIDKINEQVVAS 408 Query: 60 I 60 I Sbjct: 409 I 409 >gi|257784003|ref|YP_003179220.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257472510|gb|ACV50629.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 328 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H R + AT + G + +Q +LGHS++ TT Y V+ + Sbjct: 276 HKFRRTMATRAIDKGMPIEQVQVLLGHSKIDTTLCYAMVDQE 317 >gi|226323788|ref|ZP_03799306.1| hypothetical protein COPCOM_01563 [Coprococcus comes ATCC 27758] gi|225207972|gb|EEG90326.1| hypothetical protein COPCOM_01563 [Coprococcus comes ATCC 27758] Length = 60 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT + G +++Q +LGHS + T Sbjct: 2 HILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 34 >gi|167752928|ref|ZP_02425055.1| hypothetical protein ALIPUT_01190 [Alistipes putredinis DSM 17216] gi|167659997|gb|EDS04127.1| hypothetical protein ALIPUT_01190 [Alistipes putredinis DSM 17216] Length = 406 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + +T RHSFAT L G ++ I LGH L TT+ Y Sbjct: 350 STYTARHSFATVLKRAGANIAYISESLGHQDLKTTENY 387 >gi|51035330|emb|CAF32679.1| hypothetical protein [Oenococcus phage fOg30] Length = 364 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN-VNSKR 48 S T H LRH+ A+ LL+NG ++ I LGH+ L T+ +Y++ + SKR Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITEKVYSHLLESKR 333 >gi|293371861|ref|ZP_06618266.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292633167|gb|EFF51743.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 387 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+F +L+ + SI ++GH+ +++TQ+Y V +++ Sbjct: 320 HASRHTFGVLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKI 363 >gi|253567770|ref|ZP_04845181.1| integrase [Bacteroides sp. 1_1_6] gi|298384675|ref|ZP_06994235.1| integrase [Bacteroides sp. 1_1_14] gi|251841843|gb|EES69923.1| integrase [Bacteroides sp. 1_1_6] gi|298262954|gb|EFI05818.1| integrase [Bacteroides sp. 1_1_14] Length = 318 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|251780937|ref|ZP_04823857.1| DNA integration/recombination protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085252|gb|EES51142.1| DNA integration/recombination protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 338 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHP 58 T H LR++F+ L +GG L + ILGHS + T+ Y ++ + + + Y P Sbjct: 274 TPHGLRNNFSRRFLLSGGSLMILSKILGHSSVKVTESAYLDLQDEDLRKKYQSYSP 329 >gi|237718680|ref|ZP_04549161.1| integrase [Bacteroides sp. 2_2_4] gi|229452140|gb|EEO57931.1| integrase [Bacteroides sp. 2_2_4] Length = 317 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|229008693|ref|ZP_04166093.1| Phage integrase [Bacillus mycoides Rock1-4] gi|228752546|gb|EEM02174.1| Phage integrase [Bacillus mycoides Rock1-4] Length = 381 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T+ +Y++++ K Sbjct: 321 HSLRHTHAVLLLESGASMKFIQDRLGHKSIEITSNVYSHISDK 363 >gi|261368414|ref|ZP_05981297.1| putative integrase [Subdoligranulum variabile DSM 15176] gi|282569555|gb|EFB75090.1| putative integrase [Subdoligranulum variabile DSM 15176] Length = 248 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 25/52 (48%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FA +L + +LGHS + TT+IY + + +Q H Sbjct: 194 HNLRHLFARTFYHIEKNLSKLADLLGHSSIETTRIYIMESGAEHQRLLEQMH 245 >gi|149003143|ref|ZP_01828052.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69] gi|237651082|ref|ZP_04525334.1| integrase [Streptococcus pneumoniae CCRI 1974] gi|237821195|ref|ZP_04597040.1| integrase [Streptococcus pneumoniae CCRI 1974M2] gi|147758884|gb|EDK65880.1| DNA-damage-inducible protein D [Streptococcus pneumoniae SP14-BS69] Length = 388 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56 T H RH+ A+ LL+ G + IQ+ LGH++LS T IY+++ N K Y++ Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEKA 381 >gi|153814784|ref|ZP_01967452.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756] gi|317500288|ref|ZP_07958515.1| transposase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847815|gb|EDK24733.1| hypothetical protein RUMTOR_00999 [Ruminococcus torques ATCC 27756] gi|316898331|gb|EFV20375.1| transposase [Lachnospiraceae bacterium 8_1_57FAA] Length = 420 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 T H RH++ T++ ++G + +++Q ++GHS +S T IYT Sbjct: 340 TPHVCRHTYCTNMANSGMNPKTLQYLMGHSDISVTLNIYT 379 >gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30] gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10] Length = 410 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ + L +G ++ +Q LGH+ + TT IY +V+ ++ E D+ Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADR 374 >gi|237805544|ref|ZP_04592248.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026651|gb|EGI06706.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 153 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT+IY Sbjct: 101 HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 136 >gi|227505766|ref|ZP_03935815.1| integrase family protein [Corynebacterium striatum ATCC 6940] gi|227197612|gb|EEI77660.1| integrase family protein [Corynebacterium striatum ATCC 6940] Length = 252 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 26/41 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+ RH+ + LL G D +I+ I GHS + +T+ Y +V++ Sbjct: 200 HSARHTMVSLLLDAGVDAETIRQIAGHSTVLSTRGYMHVST 240 >gi|160884471|ref|ZP_02065474.1| hypothetical protein BACOVA_02455 [Bacteroides ovatus ATCC 8483] gi|299145979|ref|ZP_07039047.1| integrase [Bacteroides sp. 3_1_23] gi|156110210|gb|EDO11955.1| hypothetical protein BACOVA_02455 [Bacteroides ovatus ATCC 8483] gi|298516470|gb|EFI40351.1| integrase [Bacteroides sp. 3_1_23] Length = 317 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|117676295|ref|YP_863871.1| phage integrase family protein [Shewanella sp. ANA-3] gi|117615119|gb|ABK50572.1| phage integrase family protein [Shewanella sp. ANA-3] Length = 221 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++H+ R S +T+ + NG + ++ ILGH+ TT Y + KR+ E+ Sbjct: 167 SSHSGRKSLSTNAVVNGVPIETVARILGHASPETTIDYVVIQPKRIEEM 215 >gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614] Length = 378 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 T+H+ RH A+ L+S G ++ +Q+ LGH S + T + Y ++ Sbjct: 303 TSHSFRHFAASALISGGASVKQVQAFLGHASAVVTLRTYAHL 344 >gi|330893036|gb|EGH25697.1| Phage integrase [Pseudomonas syringae pv. mori str. 301020] Length = 107 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT+IY Sbjct: 55 HGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 90 >gi|317011155|gb|ADU84902.1| integrase-recombinase protein [Helicobacter pylori SouthAfrica7] Length = 358 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RHSFAT + + D+ LGH LS+T+IY Sbjct: 299 TGLHLFRHSFATLVYAESRDIVLTSRALGHQSLSSTKIY 337 >gi|315148175|gb|EFT92191.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4244] Length = 418 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 22/44 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+F+T G + I +L HS + T+IY N S Sbjct: 343 ATPHMFRHTFSTLAYEGGATMEQISQMLTHSDTNITKIYVNTES 386 >gi|313147493|ref|ZP_07809686.1| integrase [Bacteroides fragilis 3_1_12] gi|313136260|gb|EFR53620.1| integrase [Bacteroides fragilis 3_1_12] Length = 345 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 283 STHTARHSYATSICLANGVSMENVAKMLGHADTSITKHYARV 324 >gi|270294207|ref|ZP_06200409.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275674|gb|EFA21534.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 420 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+N L+ + ++LGH+ TQ Y V + + + Sbjct: 361 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKD 409 >gi|265757008|ref|ZP_06090870.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233507|gb|EEZ19136.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 420 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+N L+ + ++LGH+ TQ Y V + + + Sbjct: 361 TTHAARHTFATTVTLANNVPLQEVSAMLGHASTRMTQHYARVMDRNLKD 409 >gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 386 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51 H+LRHS+ T G ++++IQ+ LGHS+ S T +YT ++ E Sbjct: 329 HSLRHSYGTLQNEAGVNMKAIQATLGHSKASFTMSVYTQNTTELQRE 375 >gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999] Length = 383 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 S H LRH+F ++L+S+ L S+Q + H+ STT Y V+ Sbjct: 325 SVRIHDLRHTFCSNLVSSNVSLASVQQLANHACYSTTLRYAKVS 368 >gi|312952563|ref|ZP_07771428.1| putative phage head-tail adaptor [Enterococcus faecalis TX0102] gi|310629464|gb|EFQ12747.1| putative phage head-tail adaptor [Enterococcus faecalis TX0102] gi|315153426|gb|EFT97442.1| putative phage head-tail adaptor [Enterococcus faecalis TX0031] Length = 389 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVN---SKRMMEIYDQT 56 AH LRHS A+ L+S G + ++ LGH + TT +Y N N ++++ I D Sbjct: 313 AHALRHSHASLLISMGENALVVRDRLGHEDIQTTLGTYGHLYENANKEVARKLTNIIDIP 372 Query: 57 HPSITQK 63 ++T+K Sbjct: 373 KANVTRK 379 >gi|301166953|emb|CBW26532.1| putative integrase/tyrosine recombinase [Bacteriovorax marinus SJ] Length = 317 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+ R +F LL NG D+ S+ + HS + TTQ Y Sbjct: 260 FKVTPHSCRATFIGELLENGVDIYSVAREVNHSSVKTTQEY 300 >gi|301062571|ref|ZP_07203209.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300443336|gb|EFK07463.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 283 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FA+ L+ G +++ IQ+ LGHS + T Sbjct: 210 HDLRHTFASLLIEQGENVKYIQTQLGHSSPTVT 242 >gi|222873823|gb|EEF10954.1| predicted protein [Populus trichocarpa] Length = 179 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + + H LRHS ATHLL G + +Q L H ++TT+ YT Sbjct: 121 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYT 161 >gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium] gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus] gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] Length = 410 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ + L +G ++ +Q LGH+ + TT IY +V+ ++ E D+ Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADR 374 >gi|57867418|ref|YP_189033.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A] gi|283771080|ref|ZP_06343971.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19] gi|57638076|gb|AAW54864.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A] gi|283459674|gb|EFC06765.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19] Length = 675 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 521 >gi|237717596|ref|ZP_04548077.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229453100|gb|EEO58891.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 406 Score = 34.7 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H+ RHS+AT + L+NG + ++ +LGH+ S T+ Y V + +++ Sbjct: 346 HSARHSYATSVCLANGVSMENVAKMLGHADTSVTKHYARVLDQNILK 392 >gi|227833790|ref|YP_002835497.1| hypothetical protein cauri_1966 [Corynebacterium aurimucosum ATCC 700975] gi|262184862|ref|ZP_06044283.1| hypothetical protein CaurA7_12772 [Corynebacterium aurimucosum ATCC 700975] gi|227454806|gb|ACP33559.1| hypothetical protein cauri_1966 [Corynebacterium aurimucosum ATCC 700975] Length = 394 Score = 34.7 bits (78), Expect = 5.1, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HT RH+ +HLL G D I+ GHS L +T+ Y + + M + ++ Sbjct: 343 HTARHTVISHLLDAGVDAELIRQFAGHSTLLSTRHYLHSSEDAMRDALEK 392 >gi|148988907|ref|ZP_01820322.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] gi|147925718|gb|EDK76794.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] Length = 388 Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 T H RH+ A+ LL+ G + IQ+ LGH++LS T IY+++ N K Y++ Sbjct: 325 TFHAFRHTHASILLNAGLPYKEIQTRLGHAKLSMTMDIYSHLSKDNQKNATSFYEK 380 >gi|281334680|gb|ADA61764.1| Tn554-related, transposase B [Staphylococcus epidermidis] Length = 607 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 415 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 453 >gi|256544839|ref|ZP_05472211.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399728|gb|EEU13333.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 411 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H RH+F T L + +++QSILGHS ++TT IY + Sbjct: 352 HIFRHTFTTRLNEQNINTKAMQSILGHSDITTTMDIYVD 390 >gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97] gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97] Length = 319 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 21/39 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + HTLRH+F L+ G + I GHS + TT IY Sbjct: 257 SPHTLRHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYV 295 >gi|116669556|ref|YP_830489.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116609665|gb|ABK02389.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 806 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H R FAT L++G +Q ++GH+ L+TTQ Y + Sbjct: 609 TPHDFRRIFATEALASGLPPHIVQVLMGHASLATTQGYAAI 649 >gi|258453348|ref|ZP_05701333.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937] gi|257864556|gb|EEV87299.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937] Length = 687 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ +IQ +L HS T Y + Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKL 533 >gi|255505492|ref|ZP_05346451.3| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255267569|gb|EET60774.1| site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 143 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRHS A+ L G + IQ LGH+ TT IYT++ Sbjct: 94 TFHNLRHSTASMLYEKGWHPKDIQEWLGHADFYTTMNIYTHL 135 >gi|15606394|ref|NP_213774.1| hypothetical protein aq_1137 [Aquifex aeolicus VF5] gi|2983608|gb|AAC07178.1| putative protein [Aquifex aeolicus VF5] Length = 290 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 + H+ RH++ T+L+++G + ++ GHS + TT + Y + KR E+ Sbjct: 233 SIHSFRHTYITNLINSGFPIEVVKEFAGHSSIKTTVETYYKFSQKRAQEL 282 >gi|319935324|ref|ZP_08009762.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1] gi|319809732|gb|EFW06133.1| hypothetical protein HMPREF9488_00593 [Coprobacillus sp. 29_1] Length = 432 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT + G +L +Q LGHS ++TT Sbjct: 372 HDLRHTCATRMCIKGENLVKVQKWLGHSSITTT 404 >gi|295112438|emb|CBL31075.1| Site-specific recombinase XerD [Enterococcus sp. 7L76] Length = 389 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVN---SKRMMEIYDQT 56 AH LRHS A+ L+S G + ++ LGH + TT +Y N N ++++ I D Sbjct: 313 AHALRHSHASLLISMGENALVVRDRLGHEDIQTTLGTYGHLYENANKEVARKLTNIIDIP 372 Query: 57 HPSITQK 63 ++T+K Sbjct: 373 KANVTRK 379 >gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 359 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L +G L+ +Q LGH+ L TT IYT++ Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHI 341 >gi|257085325|ref|ZP_05579686.1| phage integrase [Enterococcus faecalis Fly1] gi|256993355|gb|EEU80657.1| phage integrase [Enterococcus faecalis Fly1] Length = 400 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+++ +E+Y H Sbjct: 338 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 395 >gi|167759261|ref|ZP_02431388.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704] gi|167663135|gb|EDS07265.1| hypothetical protein CLOSCI_01608 [Clostridium scindens ATCC 35704] Length = 287 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA +L ++ ILGHS L T++YT Sbjct: 228 HNLRHLFARTFYKGTNNLVNLAEILGHSSLEITRVYT 264 >gi|160882091|ref|ZP_02063094.1| hypothetical protein BACOVA_00029 [Bacteroides ovatus ATCC 8483] gi|160886093|ref|ZP_02067096.1| hypothetical protein BACOVA_04100 [Bacteroides ovatus ATCC 8483] gi|156108906|gb|EDO10651.1| hypothetical protein BACOVA_04100 [Bacteroides ovatus ATCC 8483] gi|156112515|gb|EDO14260.1| hypothetical protein BACOVA_00029 [Bacteroides ovatus ATCC 8483] Length = 411 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS LS T+ Y Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390 >gi|83814942|ref|YP_445217.1| Phage integrase family protein [Salinibacter ruber DSM 13855] gi|83756336|gb|ABC44449.1| Phage integrase family protein [Salinibacter ruber DSM 13855] Length = 415 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RHS A L GD+ ++ ILGHSR+ T+ Y Sbjct: 361 TFHLSRHSAAWKLYREMGDIYKVKRILGHSRVEVTEEY 398 >gi|329577595|gb|EGG59028.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1467] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|293369766|ref|ZP_06616342.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292635188|gb|EFF53704.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 317 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +++TLRHS+AT G + I LGH + TTQIY Sbjct: 252 VSSYTLRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 290 >gi|325680115|ref|ZP_08159681.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324108190|gb|EGC02440.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 395 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN------SKRMME 51 + T H+LRH+ T LL G ++ +Q LGH +S T IY ++ SKR +E Sbjct: 335 AFTFHSLRHTHCTRLLEAGLPIKYVQERLGHKNISVTMDIYNHLTQNQAELSKRALE 391 >gi|237716381|ref|ZP_04546862.1| integrase [Bacteroides sp. D1] gi|262407983|ref|ZP_06084531.1| integrase [Bacteroides sp. 2_1_22] gi|294644734|ref|ZP_06722481.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807828|ref|ZP_06766614.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229444028|gb|EEO49819.1| integrase [Bacteroides sp. D1] gi|262354791|gb|EEZ03883.1| integrase [Bacteroides sp. 2_1_22] gi|292639922|gb|EFF58193.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444968|gb|EFG13649.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|295085114|emb|CBK66637.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 411 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS LS T+ Y Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390 >gi|228997246|ref|ZP_04156870.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17] gi|228762520|gb|EEM11443.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17] Length = 704 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ ++Q +L H+ T Y + Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLQYAKL 543 >gi|254465467|ref|ZP_05078878.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206686375|gb|EDZ46857.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 229 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A+ + +G D +++ I+GH L+TT Y ++ Sbjct: 158 HDLRHTYASVAMKDGIDPFTLKEIMGHKNLTTTLRYAHL 196 >gi|157777889|gb|ABV70075.1| putative integrase/recombinase protein [Heterosigma akashiwo] Length = 300 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 22/40 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+H+ R + T L + D+ ++ +GH +L TT Y N Sbjct: 246 TSHSFRIGYITQLWKDSKDIEFVKQTIGHRKLDTTSAYVN 285 >gi|188527674|ref|YP_001910361.1| integrase/recombinase (xerD) [Helicobacter pylori Shi470] gi|188143914|gb|ACD48331.1| integrase/recombinase (xerD) [Helicobacter pylori Shi470] Length = 358 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RHSFAT + + D+ LGH LS+T+IY Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337 >gi|171057457|ref|YP_001789806.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774902|gb|ACB33041.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 337 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 22/42 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HTLRH+ A HLL +G I LGH +TT Y + Sbjct: 262 SPHTLRHTSAMHLLQSGVPFNVIALWLGHESTTTTHRYVEAD 303 >gi|195867577|ref|ZP_03079580.1| site-specific recombinase, phage integrase family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660821|gb|EDX54075.1| site-specific recombinase, phage integrase family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|53715717|ref|YP_101709.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52218582|dbj|BAD51175.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 402 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59 + T + RHS+AT G + SI LGH+ +TTQIY + NS+ + +I +Q S Sbjct: 338 LVLTTYVARHSWATIAKEEGFSIASISEGLGHTSEATTQIYLQSFNSEVIDKINEQVVAS 397 Query: 60 I 60 I Sbjct: 398 I 398 >gi|322376633|ref|ZP_08051126.1| transposase [Streptococcus sp. M334] gi|321282440|gb|EFX59447.1| transposase [Streptococcus sp. M334] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|321157444|emb|CBW39423.1| putative integrase (pseudogene) [Streptococcus pneumoniae] Length = 399 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 335 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 372 >gi|319893397|ref|YP_004150272.1| Tn916 ORF3-like transposon integrase [Staphylococcus pseudintermedius HKU10-03] gi|317163093|gb|ADV06636.1| Tn916 ORF3-like transposon integrase [Staphylococcus pseudintermedius HKU10-03] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|319892333|ref|YP_004149208.1| integrase XerD family protein [Staphylococcus pseudintermedius HKU10-03] gi|317162029|gb|ADV05572.1| integrase XerD family protein [Staphylococcus pseudintermedius HKU10-03] Length = 237 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH+ AT LL + ++ IQ LGH ++ T Q+Y++V K Sbjct: 175 HKLRHTHATLLLESDVPMKVIQERLGHKTMAVTEQVYSHVTEK 217 >gi|268610075|ref|ZP_06143802.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Ruminococcus flavefaciens FD-1] Length = 395 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN------SKRMME 51 + T H+LRH+ T LL G ++ +Q LGH +S T IY ++ SKR +E Sbjct: 335 AFTFHSLRHTHCTRLLEAGLPIKYVQERLGHKNISVTMDIYNHLTQSQAELSKRALE 391 >gi|257790681|ref|YP_003181287.1| integrase family protein [Eggerthella lenta DSM 2243] gi|257474578|gb|ACV54898.1| integrase family protein [Eggerthella lenta DSM 2243] Length = 438 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRM 49 H LRH+FAT L+ +G + +++ + LGH+ S T +IY + + + + Sbjct: 333 HRLRHTFATELIMSGVNPKTVSNWLGHTDPSFTLRIYVSSSPENL 377 >gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 291 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +AH LRH+F T L+ G + + + GHS + TT Sbjct: 237 SAHVLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTT 271 >gi|29345701|ref|NP_809204.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29337594|gb|AAO75398.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 321 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 250 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 288 >gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286] gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403] gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp. lactis Il1403] gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286] Length = 359 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L +G L+ +Q LGH+ L TT IYT++ Sbjct: 302 HAFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTHI 341 >gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 280 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMME 51 H LRH FA D+ + +LGHS ++TT+IY + V ++ +E Sbjct: 226 HNLRHLFAYSFYQMEKDIAKLADLLGHSNINTTRIYIVSSGVEHRKQIE 274 >gi|323464568|gb|ADX76721.1| integrase family protein [Staphylococcus pseudintermedius ED99] Length = 237 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRH+ AT LL + ++ IQ LGH ++ T Q+Y++V K Sbjct: 175 HKLRHTHATLLLESDVPMKVIQERLGHKTMAVTEQVYSHVTEK 217 >gi|309803092|ref|ZP_07697189.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|308164600|gb|EFO66850.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|299145477|ref|ZP_07038545.1| integrase [Bacteroides sp. 3_1_23] gi|298515968|gb|EFI39849.1| integrase [Bacteroides sp. 3_1_23] Length = 411 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS LS T+ Y Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390 >gi|293115744|ref|ZP_05792867.2| transposase [Butyrivibrio crossotus DSM 2876] gi|292808507|gb|EFF67712.1| transposase [Butyrivibrio crossotus DSM 2876] Length = 337 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 17/76 (22%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV----------------NS 46 T H RH++ +++ +G + +++Q ++GHS ++ T +YT+V N+ Sbjct: 256 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDIAVTLNVYTHVGLEDAEKELQKMQGLENA 315 Query: 47 KRMMEIYDQTHPSITQ 62 ++ MEI D + Q Sbjct: 316 RKEMEISDTDDKPLKQ 331 >gi|256377555|ref|YP_003101215.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255921858|gb|ACU37369.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H LRH + T + G +L ++Q+ +GHS + TT Q+Y + Sbjct: 342 HALRHFYVTTAVEAGAELGNVQADVGHSSIDTTSQVYNH 380 >gi|237800512|ref|ZP_04588973.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023372|gb|EGI03429.1| Phage integrase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 137 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT+IY Sbjct: 85 HGLRATAATNALEHEADIAKVQLWLGHANISTTKIY 120 >gi|237720834|ref|ZP_04551315.1| integrase [Bacteroides sp. 2_2_4] gi|293371980|ref|ZP_06618380.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|298481359|ref|ZP_06999552.1| integrase [Bacteroides sp. D22] gi|229449669|gb|EEO55460.1| integrase [Bacteroides sp. 2_2_4] gi|292633057|gb|EFF51638.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|298272563|gb|EFI14131.1| integrase [Bacteroides sp. D22] Length = 411 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS LS T+ Y Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLSVTEHY 390 >gi|431132|gb|AAC36982.1| ORF2 [Enterococcus faecalis] Length = 405 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|44004340|ref|NP_982008.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|42741406|gb|AAS44851.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] Length = 684 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ ++Q +L H+ T Y + Sbjct: 485 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 523 >gi|85716253|ref|ZP_01047227.1| possible integrase [Nitrobacter sp. Nb-311A] gi|85696925|gb|EAQ34809.1| possible integrase [Nitrobacter sp. Nb-311A] Length = 314 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ ATHLL G + + +LG + + ++Y + +S+ + + D+ Sbjct: 261 HILRHTRATHLLQAGASIYDVAKLLGDTTATVERVYGHHSSESLGKKLDE 310 >gi|297172605|gb|ADI23574.1| integrase [uncultured nuHF2 cluster bacterium HF0770_42C12] Length = 433 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNV 44 T H LRH++AT L+ G D ++GH+ +STT +Y ++ Sbjct: 350 TWHMLRHAYATAFLTKRGRDWIKAMELMGHADVSTTMMYKHI 391 >gi|298387400|ref|ZP_06996953.1| integrase [Bacteroides sp. 1_1_14] gi|298260069|gb|EFI02940.1| integrase [Bacteroides sp. 1_1_14] Length = 318 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTIRHSWATTAKFRGVPIEMISESLGHKSIKTTQIY 290 >gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040] gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040] Length = 411 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH++A++ +S G ++ + +LGH+++ TT Y ++ Sbjct: 342 HDLRHTYASNAVSAGMPIQMVGRLLGHTQIQTTMRYAHL 380 >gi|308061561|gb|ADO03449.1| integrase/recombinase (xerD) [Helicobacter pylori Cuz20] Length = 358 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RHSFAT + + D+ LGH LS+T+IY Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337 >gi|298384603|ref|ZP_06994163.1| integrase [Bacteroides sp. 1_1_14] gi|298262882|gb|EFI05746.1| integrase [Bacteroides sp. 1_1_14] Length = 320 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 249 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 287 >gi|256960289|ref|ZP_05564460.1| transposase [Enterococcus faecalis Merz96] gi|293382155|ref|ZP_06628098.1| transposase [Enterococcus faecalis R712] gi|293388533|ref|ZP_06633037.1| transposase [Enterococcus faecalis S613] gi|312905749|ref|ZP_07764771.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312909055|ref|ZP_07767915.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|256950785|gb|EEU67417.1| transposase [Enterococcus faecalis Merz96] gi|291080438|gb|EFE17802.1| transposase [Enterococcus faecalis R712] gi|291082137|gb|EFE19100.1| transposase [Enterococcus faecalis S613] gi|310628228|gb|EFQ11511.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|311290617|gb|EFQ69173.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] Length = 405 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|206580032|ref|YP_002237617.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206569090|gb|ACI10866.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 315 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 LRH+ AT L+ G L I LGH+ T+IY V+ K + + D Sbjct: 262 LRHACATRLMEAGIPLAQIGMHLGHTDADATRIYAKVDMKALRRVAD 308 >gi|22537078|ref|NP_687929.1| Tn916, transposase [Streptococcus agalactiae 2603V/R] gi|77411122|ref|ZP_00787475.1| transposase [Streptococcus agalactiae CJB111] gi|77414298|ref|ZP_00790456.1| transposase [Streptococcus agalactiae 515] gi|146318571|ref|YP_001198283.1| Tn916, transposase [Streptococcus suis 05ZYH33] gi|146320770|ref|YP_001200481.1| Tn916, transposase [Streptococcus suis 98HAH33] gi|169832853|ref|YP_001694711.1| transposase [Streptococcus pneumoniae Hungary19A-6] gi|182683149|ref|YP_001834896.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14] gi|225856784|ref|YP_002738295.1| transposase [Streptococcus pneumoniae P1031] gi|225861770|ref|YP_002743279.1| transposase [Streptococcus pneumoniae Taiwan19F-14] gi|227554339|ref|ZP_03984386.1| phage integrase family site-specific recombinase [Enterococcus faecalis HH22] gi|229546609|ref|ZP_04435334.1| phage integrase family site-specific recombinase [Enterococcus faecalis TX1322] gi|253751695|ref|YP_003024836.1| integrase [Streptococcus suis SC84] gi|253755101|ref|YP_003028241.1| integrase [Streptococcus suis BM407] gi|253755593|ref|YP_003028733.1| integrase [Streptococcus suis BM407] gi|255974502|ref|ZP_05425088.1| transposase [Enterococcus faecalis T2] gi|256852546|ref|ZP_05557921.1| transposase transposon [Enterococcus faecalis T8] gi|257077710|ref|ZP_05572071.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1] gi|257086326|ref|ZP_05580687.1| transposase [Enterococcus faecalis D6] gi|257090932|ref|ZP_05585293.1| transposase [Enterococcus faecalis CH188] gi|257868798|ref|ZP_05648451.1| transposase [Enterococcus gallinarum EG2] gi|260562522|ref|ZP_05833031.1| transposase [Enterococcus faecium C68] gi|270293255|ref|ZP_06199466.1| transposase [Streptococcus sp. M143] gi|288905869|ref|YP_003431091.1| integrase [Streptococcus gallolyticus UCN34] gi|289422721|ref|ZP_06424561.1| site-specific recombinase, phage integrase family [Peptostreptococcus anaerobius 653-L] gi|296451810|ref|ZP_06893532.1| transposase [Clostridium difficile NAP08] gi|296881112|ref|ZP_06905049.1| transposase [Clostridium difficile NAP07] gi|298229317|ref|ZP_06962998.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255933|ref|ZP_06979519.1| putative integrase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503724|ref|YP_003725664.1| phage integrase family site-specific recombinase [Streptococcus pneumoniae TCH8431/19A] gi|300814579|ref|ZP_07094830.1| site-specific recombinase, phage integrase family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300862142|ref|ZP_07108222.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|302379670|ref|ZP_07268155.1| site-specific recombinase, phage integrase family [Finegoldia magna ACS-171-V-Col3] gi|306832037|ref|ZP_07465192.1| transposase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834414|ref|ZP_07467528.1| transposase [Streptococcus bovis ATCC 700338] gi|307269843|ref|ZP_07551173.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|307275108|ref|ZP_07556262.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|307284038|ref|ZP_07564208.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|307287203|ref|ZP_07567274.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0109] gi|309804793|ref|ZP_07698857.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|309806281|ref|ZP_07700294.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|309808544|ref|ZP_07702442.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|312873244|ref|ZP_07733300.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2052A-d] gi|312952178|ref|ZP_07771056.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|313884639|ref|ZP_07818397.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] gi|313890688|ref|ZP_07824314.1| site-specific recombinase, phage integrase family [Streptococcus pseudoporcinus SPIN 20026] gi|313891983|ref|ZP_07825584.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] gi|314948678|ref|ZP_07852052.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|317495467|ref|ZP_07953835.1| phage integrase [Gemella moribillum M424] gi|322385321|ref|ZP_08058966.1| transposase [Streptococcus cristatus ATCC 51100] gi|322388202|ref|ZP_08061806.1| transposase [Streptococcus infantis ATCC 700779] gi|322392777|ref|ZP_08066235.1| transposase [Streptococcus peroris ATCC 700780] gi|325911715|ref|ZP_08174122.1| site-specific recombinase, phage integrase family [Lactobacillus iners UPII 143-D] gi|329122049|ref|ZP_08250657.1| transposase [Dialister micraerophilus DSM 19965] gi|331267245|ref|YP_004326875.1| Tn916, transposase; site-specific recombinase,phage integrase family [Streptococcus oralis Uo5] gi|51703322|sp|P62904|TNR5_STRA5 RecName: Full=Transposase from transposon Tn1545; AltName: Full=Integrase gi|51703323|sp|P62905|TNR5_STRPN RecName: Full=Transposase from transposon Tn1545; AltName: Full=Integrase gi|22533937|gb|AAM99801.1|AE014233_18 Tn916, transposase [Streptococcus agalactiae 2603V/R] gi|47463|emb|CAA43360.1| integrase of Tn1545 [Streptococcus pneumoniae] gi|67043707|gb|AAY63950.1| Int-Tn [Streptococcus cristatus] gi|77159643|gb|EAO70796.1| transposase [Streptococcus agalactiae 515] gi|77162845|gb|EAO73803.1| transposase [Streptococcus agalactiae CJB111] gi|145689377|gb|ABP89883.1| Tn916, transposase [Streptococcus suis 05ZYH33] gi|145691576|gb|ABP92081.1| Tn916, transposase [Streptococcus suis 98HAH33] gi|154799905|emb|CAO82956.1| integrase of transposon Tn916 [Streptococcus pneumoniae] gi|168995355|gb|ACA35967.1| transposase from transposon (Integrase) [Streptococcus pneumoniae Hungary19A-6] gi|169636240|dbj|BAG12510.1| Int-Tn protein [Streptococcus pneumoniae] gi|171472330|gb|ACB46878.1| integrase [Klebsiella pneumoniae] gi|182628483|gb|ACB89431.1| hypothetical protein SPCG_0179 [Streptococcus pneumoniae CGSP14] gi|183217307|gb|ACC59226.1| integrase [Streptococcus pneumoniae] gi|218473439|emb|CAV31149.1| integrase [Streptococcus pneumoniae] gi|225725688|gb|ACO21540.1| transposase from transposon (Integrase) [Streptococcus pneumoniae P1031] gi|225726388|gb|ACO22239.1| transposase from transposon (Integrase) [Streptococcus pneumoniae Taiwan19F-14] gi|227176549|gb|EEI57521.1| phage integrase family site-specific recombinase [Enterococcus faecalis HH22] gi|229308266|gb|EEN74253.1| phage integrase family site-specific recombinase [Enterococcus faecalis TX1322] gi|251815984|emb|CAZ51601.1| integrase [Streptococcus suis SC84] gi|251817565|emb|CAZ55312.1| integrase [Streptococcus suis BM407] gi|251818057|emb|CAZ55849.1| integrase [Streptococcus suis BM407] gi|255967374|gb|EET97996.1| transposase [Enterococcus faecalis T2] gi|256712093|gb|EEU27126.1| transposase transposon [Enterococcus faecalis T8] gi|256985740|gb|EEU73042.1| hypothetical protein EFIG_01493 [Enterococcus faecalis JH1] gi|256994356|gb|EEU81658.1| transposase [Enterococcus faecalis D6] gi|256999744|gb|EEU86264.1| transposase [Enterococcus faecalis CH188] gi|257802962|gb|EEV31784.1| transposase [Enterococcus gallinarum EG2] gi|258590751|emb|CBE66546.1| transposase [Staphylococcus rostri] gi|259906610|gb|ACW84384.1| integrase [Streptococcus pneumoniae] gi|260073122|gb|EEW61468.1| transposase [Enterococcus faecium C68] gi|270279234|gb|EFA25080.1| transposase [Streptococcus sp. M143] gi|283470169|emb|CAQ49380.1| transposase from transposon (Integrase) [Staphylococcus aureus subsp. aureus ST398] gi|288732595|emb|CBI14167.1| putative integrase [Streptococcus gallolyticus UCN34] gi|289156900|gb|EFD05525.1| site-specific recombinase, phage integrase family [Peptostreptococcus anaerobius 653-L] gi|295980958|emb|CBJ57206.1| integrase [Streptococcus pneumoniae] gi|296259368|gb|EFH06241.1| transposase [Clostridium difficile NAP08] gi|296427881|gb|EFH13791.1| transposase [Clostridium difficile NAP07] gi|296777681|gb|ADH43098.1| Tn916-like integrase protein [uncultured bacterium MID12] gi|298239319|gb|ADI70450.1| phage integrase family site-specific recombinase [Streptococcus pneumoniae TCH8431/19A] gi|300511198|gb|EFK38447.1| site-specific recombinase, phage integrase family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300848667|gb|EFK76424.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|302312577|gb|EFK94573.1| site-specific recombinase, phage integrase family [Finegoldia magna ACS-171-V-Col3] gi|304423400|gb|EFM26552.1| transposase [Streptococcus bovis ATCC 700338] gi|304425963|gb|EFM29080.1| transposase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306501801|gb|EFM71092.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0109] gi|306503409|gb|EFM72658.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|306508226|gb|EFM77342.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|306513953|gb|EFM82555.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|308165903|gb|EFO68122.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|308167265|gb|EFO69431.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|308168221|gb|EFO70341.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|310629834|gb|EFQ13117.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|311091255|gb|EFQ49643.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2052A-d] gi|312620149|gb|EFR31580.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] gi|313119626|gb|EFR42817.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] gi|313120936|gb|EFR44049.1| site-specific recombinase, phage integrase family [Streptococcus pseudoporcinus SPIN 20026] gi|313644931|gb|EFS09511.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|315027177|gb|EFT39109.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2137] gi|315032855|gb|EFT44787.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] gi|315036027|gb|EFT47959.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] gi|315154501|gb|EFT98517.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0031] gi|315154976|gb|EFT98992.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0043] gi|315158726|gb|EFU02743.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] gi|315163447|gb|EFU07464.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315164555|gb|EFU08572.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1302] gi|315174526|gb|EFU18543.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1346] gi|315574457|gb|EFU86648.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315582886|gb|EFU95077.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] gi|316914281|gb|EFV35759.1| phage integrase [Gemella moribillum M424] gi|321140874|gb|EFX36375.1| transposase [Streptococcus infantis ATCC 700779] gi|321144355|gb|EFX39758.1| transposase [Streptococcus peroris ATCC 700780] gi|321156814|emb|CBW38800.1| putative integrase [Streptococcus pneumoniae] gi|321156872|emb|CBW38860.1| putative integrase [Streptococcus pneumoniae] gi|321157358|emb|CBW39339.1| Integrase [Streptococcus pneumoniae] gi|321157378|emb|CBW39358.1| putative integrase (pseudogene) [Streptococcus pneumoniae] gi|321157403|emb|CBW39382.1| putative integrase (pseudogene) [Streptococcus pneumoniae] gi|321157425|emb|CBW39404.1| putative integrase [Streptococcus pneumoniae] gi|321157469|emb|CBW39447.1| putative integrase (pseudogene) [Streptococcus pneumoniae] gi|321270580|gb|EFX53495.1| transposase [Streptococcus cristatus ATCC 51100] gi|325476481|gb|EGC79640.1| site-specific recombinase, phage integrase family [Lactobacillus iners UPII 143-D] gi|325689196|gb|EGD31203.1| transposase [Streptococcus sanguinis SK115] gi|326683917|emb|CBZ01535.1| Tn916, transposase; site-specific recombinase,phage integrase family [Streptococcus oralis Uo5] gi|327466856|gb|EGF12372.1| transposase [Dialister micraerophilus DSM 19965] gi|327474195|gb|EGF19603.1| transposase [Streptococcus sanguinis SK408] gi|332075490|gb|EGI85959.1| transposase [Streptococcus pneumoniae GA41301] Length = 405 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 446 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRH+FA+ G +I ++LGH+ TQ Y +++ M Sbjct: 355 TPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRM 401 >gi|289425363|ref|ZP_06427140.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK187] gi|289154341|gb|EFD03029.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK187] Length = 442 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT R A+ L G D+++ SILGHS + T YT +N+ Sbjct: 361 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 401 >gi|188026430|ref|ZP_02997899.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827] gi|291326773|ref|ZP_06125806.2| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131] gi|188019829|gb|EDU57869.1| hypothetical protein PROSTU_04138 [Providencia stuartii ATCC 25827] gi|291312882|gb|EFE53335.1| glutamine amidotransferase, class I [Providencia rettgeri DSM 1131] Length = 337 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 25/50 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRH+ A HLL +G I LGH ++TT Y N + E+ Sbjct: 261 VSPHVLRHTTAMHLLQSGVSFNLIALWLGHESVNTTHRYVEANLQMKEEV 310 >gi|27365771|ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6] gi|27361920|gb|AAO10826.1| Integrase [Vibrio vulnificus CMCP6] Length = 402 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH FA+ L+ DL ++ +LGH+ L T Y ++ Sbjct: 351 HDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHL 389 >gi|27380114|ref|NP_771643.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27353268|dbj|BAC50268.1| bll5003 [Bradyrhizobium japonicum USDA 110] Length = 372 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH FAT LL +L+ +Q L H+ + TT Y +V Sbjct: 307 HDFRHDFATKLLRETKNLKLVQRALNHADIKTTTKYAHV 345 >gi|330833786|ref|YP_004402611.1| integrase family protein [Streptococcus suis ST3] gi|329308009|gb|AEB82425.1| integrase family protein [Streptococcus suis ST3] Length = 390 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56 H RH+ A+ LL++G + +Q LGHSR+S T IY+++ N+K + Y++ Sbjct: 332 HGFRHTHASLLLNSGIPYKELQHRLGHSRISITMDIYSHLSKENAKNAVAFYEKA 386 >gi|325289641|ref|YP_004265822.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324965042|gb|ADY55821.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 378 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H +RH+FAT L D++++ +LGHS ++ T Sbjct: 315 HAIRHTFATRALEMSVDIKTLSELLGHSSVTVT 347 >gi|325677719|ref|ZP_08157370.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324110585|gb|EGC04750.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 362 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT+ G +++++ ++LGHS ++ T Sbjct: 308 HKLRHTFATNSAEKGFNVKALSAVLGHSSVTLT 340 >gi|318060278|ref|ZP_07979001.1| phage integrase family protein [Streptomyces sp. SA3_actG] gi|318076283|ref|ZP_07983615.1| phage integrase family protein [Streptomyces sp. SA3_actF] Length = 81 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNV 44 H LRH +A+ L++ G ++ +Q +LGH S + T +IY ++ Sbjct: 4 HDLRHFYASALIAGGASVKQVQMVLGHASAVITLRIYAHL 43 >gi|284048465|ref|YP_003398804.1| integrase family protein [Acidaminococcus fermentans DSM 20731] gi|283952686|gb|ADB47489.1| integrase family protein [Acidaminococcus fermentans DSM 20731] Length = 430 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H RH++ T++ +G +++Q ++GHS +S T +YT++ Sbjct: 345 TPHVCRHTYCTNMALSGVSAKTLQYLMGHSDISITLNVYTHI 386 >gi|283851760|ref|ZP_06369038.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283572880|gb|EFC20862.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 296 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+ L+ G L + +LGH L T Y ++ Sbjct: 233 HTLRHTFASWLVQAGTPLIVVSQLLGHKSLQMTSRYAHL 271 >gi|253567689|ref|ZP_04845100.1| integrase [Bacteroides sp. 1_1_6] gi|251841762|gb|EES69842.1| integrase [Bacteroides sp. 1_1_6] Length = 309 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 238 VTSYTIRHSWATTAKYRGVPIEMISESLGHKSIKTTQIY 276 >gi|229176444|ref|ZP_04303879.1| Transposition regulatory protein TnpB [Bacillus cereus MM3] gi|228607026|gb|EEK64413.1| Transposition regulatory protein TnpB [Bacillus cereus MM3] Length = 704 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ ++Q +L H+ T Y + Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 543 >gi|254439589|ref|ZP_05053083.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] gi|198255035|gb|EDY79349.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] Length = 210 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H++R + T + G+LR++Q +LGH+++ +T Y V + + I Sbjct: 158 HSMRRTKVTQIYQKTGNLRAVQLLLGHAKMDSTVRYLGVELEDALAI 204 >gi|55420485|gb|AAV52100.1| putative DNA integrase/recombinase [Nocardioides sp. JS614] Length = 273 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 22/44 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 M T H R F T + +G L ILGH L++TQ YT V Sbjct: 87 MHLTPHDFRRVFTTTAVQDGLPLHIASRILGHRHLNSTQPYTAV 130 >gi|62768244|gb|AAY00032.1| putative integrase/recombinase [uncultured bacterial symbiont of Discodermia dissoluta] Length = 410 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHS A HLL ++ I +LGH +++T Y V + + Sbjct: 352 HILRHSLALHLLRQHTSVKVIGDLLGHRSVASTGGYLRVYEEHL 395 >gi|116749674|ref|YP_846361.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116698738|gb|ABK17926.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 348 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+LRH+FA + G L +++++LGHS + T+ Y Sbjct: 279 HSLRHTFAARTVQRGIGLPALKALLGHSTIRLTERY 314 >gi|322382849|ref|ZP_08056685.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153178|gb|EFX45632.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 245 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 19/33 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS LL N DL+ IQ LGHS TT Sbjct: 178 HDLRHSHVAILLENETDLKIIQERLGHSSYQTT 210 >gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv. glycinea str. B076] Length = 319 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 267 HGLRATAATNALDHDADIAKVQMWLGHANISTTRLY 302 >gi|317181437|dbj|BAJ59221.1| integrase/recombinase [Helicobacter pylori F57] Length = 286 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 22/42 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RHSFAT + DL LGHS L +T+IY + + Sbjct: 225 HLFRHSFATFIYDEAQDLVLTSRALGHSSLLSTKIYIHTTQE 266 >gi|315651157|ref|ZP_07904189.1| phage integrase family site-specific recombinase [Eubacterium saburreum DSM 3986] gi|315486622|gb|EFU76972.1| phage integrase family site-specific recombinase [Eubacterium saburreum DSM 3986] Length = 351 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LR ++ T+L GD+ + +LGHS ++TT+ Sbjct: 293 TPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNTTK 328 >gi|315080448|gb|EFT52424.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL078PA1] Length = 420 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT R A+ L G D+++ SILGHS + T YT +N+ Sbjct: 339 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 379 >gi|332654094|ref|ZP_08419838.1| putative prophage LambdaCh01, site-specific recombinase, phage integrase family [Ruminococcaceae bacterium D16] gi|332517180|gb|EGJ46785.1| putative prophage LambdaCh01, site-specific recombinase, phage integrase family [Ruminococcaceae bacterium D16] Length = 377 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+FAT G L I LGHS STT +IYT++ Sbjct: 319 TFHGLRHTFATIASCQGASLFDIGKALGHSTPSTTGRIYTHL 360 >gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C] gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C] Length = 422 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI-TQK 63 H LRHS AT LL G DL I+ +LGH+ + T +Y +V + + D +I +Q+ Sbjct: 351 HDLRHSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHVRLRLQRDAIDTLGHAIGSQE 410 Query: 64 D 64 D Sbjct: 411 D 411 >gi|293382367|ref|ZP_06628306.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|293389371|ref|ZP_06633829.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|312907391|ref|ZP_07766382.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312910009|ref|ZP_07768856.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|291080312|gb|EFE17676.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|291081258|gb|EFE18221.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|310626419|gb|EFQ09702.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|311289282|gb|EFQ67838.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|315577567|gb|EFU89758.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 408 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+++ +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 403 >gi|312200229|ref|YP_004020290.1| integrase family protein [Frankia sp. EuI1c] gi|311231565|gb|ADP84420.1| integrase family protein [Frankia sp. EuI1c] Length = 511 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIY 41 H LRH AT LL++G +++ + +LGH+ + T+ +Y Sbjct: 434 HDLRHGAATMLLASGAEMKLVSDVLGHASAAFTSDVY 470 >gi|296136393|ref|YP_003643635.1| integrase family protein [Thiomonas intermedia K12] gi|295796515|gb|ADG31305.1| integrase family protein [Thiomonas intermedia K12] Length = 208 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H++R + AT + +LR++Q +LGH++L +T Y + + ++I +Q Sbjct: 156 HSMRRTKATLIYRKTKNLRAVQLLLGHTKLESTVRYLGIEVEDALDIAEQ 205 >gi|54307178|ref|YP_133692.1| integrase [Enterococcus faecalis] gi|135952|sp|P22886|TNR6_ENTFA RecName: Full=Transposase from transposon Tn916; AltName: Full=Integrase gi|154956|gb|AAA19427.1| ORF2 [Enterococcus faecalis] gi|532535|gb|AAB60030.1| ORF2 [Enterococcus faecalis] gi|1097952|prf||2114402Y int-Tn gene Length = 405 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|99078096|ref|YP_611354.1| phage integrase [Ruegeria sp. TM1040] gi|99035234|gb|ABF62092.1| phage integrase [Ruegeria sp. TM1040] Length = 210 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H++R + T + G+LR++Q +LGH+++ +T Y V + + I Sbjct: 158 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAI 204 >gi|65321027|ref|ZP_00393986.1| COG0582: Integrase [Bacillus anthracis str. A2012] Length = 178 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T+ +Y++++ K Sbjct: 118 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 160 >gi|317475117|ref|ZP_07934385.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316908761|gb|EFV30447.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 421 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 361 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 400 >gi|311897190|dbj|BAJ29598.1| hypothetical protein KSE_37990 [Kitasatospora setae KM-6054] Length = 111 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRHS AT LL G +L I+ +LGH+ + T +Y +V + + D Sbjct: 34 HGLRHSTATLLLEQGVELVVIKELLGHAHIGVTATVYAHVRLRLQRDAID 83 >gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 362 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 H+ RH FAT + G D++++ ILGHS + T N N+ Sbjct: 306 HSTRHLFATRCVELGFDVKTLSEILGHSSVEVTIPVPNSNT 346 >gi|262381576|ref|ZP_06074714.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262296753|gb|EEY84683.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 406 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 346 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 385 >gi|49186550|ref|YP_029802.1| phage integrase family protein [Bacillus anthracis str. Sterne] gi|227813398|ref|YP_002813407.1| phage integrase, phage integrase family [Bacillus anthracis str. CDC 684] gi|254683591|ref|ZP_05147451.1| phage integrase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254735737|ref|ZP_05193443.1| phage integrase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254739564|ref|ZP_05197259.1| phage integrase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254751133|ref|ZP_05203172.1| phage integrase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254759450|ref|ZP_05211475.1| phage integrase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|49180477|gb|AAT55853.1| phage integrase, phage integrase family [Bacillus anthracis str. Sterne] gi|227005207|gb|ACP14950.1| phage integrase, phage integrase family [Bacillus anthracis str. CDC 684] Length = 209 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T+ +Y++++ K Sbjct: 149 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITSNVYSHISDK 191 >gi|82702826|ref|YP_412392.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82410891|gb|ABB75000.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 660 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH---SRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TA T+RHS+ T+L+ G L ++ I+GH S +S+ Y+ R + + HP++ Sbjct: 598 TAETIRHSYITYLVRQGLRLSELEQIVGHLDPSVISSYGTYSPPQQGRPLHEIEVLHPAL 657 >gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88] gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88] Length = 343 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 + HTLR+++A L GG + + ILGHS ++ T+ Sbjct: 278 SPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVTE 313 >gi|163941385|ref|YP_001646269.1| integrase family protein [Bacillus weihenstephanensis KBAB4] gi|163863582|gb|ABY44641.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 381 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T +Y++++ K Sbjct: 321 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 363 >gi|325849921|ref|ZP_08170960.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479945|gb|EGC83028.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 405 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|312904161|ref|ZP_07763329.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|310632637|gb|EFQ15920.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] Length = 408 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+++ +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 403 >gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 323 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 13/38 (34%), Positives = 22/38 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + + H LR+ FA + + NGG+ + +LGHS + T Sbjct: 259 IDISPHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVT 296 >gi|296163746|ref|ZP_06846454.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886007|gb|EFG65917.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 410 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH AT ++ +G + I +L H +T IY V + + E+ Sbjct: 352 AHLFRHGLATTMIRHGASMAEIAEVLRHRSTDSTAIYAKVAFEDLREV 399 >gi|148925349|gb|ABR19673.1| integrase [Streptococcus suis SC84] Length = 405 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|332882855|ref|ZP_08450464.1| hypothetical protein HMPREF9074_06276 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679175|gb|EGJ52163.1| hypothetical protein HMPREF9074_06276 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 84 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T + S G + SI ++GH+ + TTQ Y + ++ + D+ Sbjct: 22 HQSRHTFGTLMASAGVPMESIAKMMGHTNIRTTQGYACITDDKISKDMDK 71 >gi|313764266|gb|EFS35630.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL013PA1] gi|313816357|gb|EFS54071.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL059PA1] gi|314915743|gb|EFS79574.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL005PA4] gi|314917889|gb|EFS81720.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL050PA1] gi|314920271|gb|EFS84102.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL050PA3] gi|314957876|gb|EFT01979.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL002PA1] gi|315098723|gb|EFT70699.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL059PA2] gi|315101508|gb|EFT73484.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL046PA1] gi|327450593|gb|EGE97247.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL087PA3] gi|327454068|gb|EGF00723.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL083PA2] gi|328753150|gb|EGF66766.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL025PA2] gi|328754011|gb|EGF67627.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL087PA1] Length = 420 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT R A+ L G D+++ SILGHS + T YT +N+ Sbjct: 339 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 379 >gi|154252784|ref|YP_001413608.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154156734|gb|ABS63951.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 210 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H++R + A + G+LR++Q +LGH++L +T Y + ++I Sbjct: 158 HSMRRTKAAQIYRKTGNLRAVQLLLGHTKLESTVRYLGIEVDDALKI 204 >gi|431133|gb|AAC36983.1| ORF3 [Enterococcus faecalis] Length = 361 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334 >gi|37679961|ref|NP_934570.1| integrase [Vibrio vulnificus YJ016] gi|37198707|dbj|BAC94541.1| integrase [Vibrio vulnificus YJ016] Length = 402 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH FA+ L+ DL ++ +LGH+ L T Y ++ Sbjct: 351 HDLRHHFASKLVMKEADLNVVRELLGHADLKMTLRYAHL 389 >gi|323441307|gb|EGA98973.1| integrase [Staphylococcus aureus O46] Length = 354 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 11/63 (17%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H++RH+ ++LL NG + I LGH + TT M++Y I QK Sbjct: 289 TLHSIRHTHCSYLLHNGVSIYYISKRLGHKSIKTT-----------MDVYSHLLDEIEQK 337 Query: 64 DKK 66 +K+ Sbjct: 338 EKE 340 >gi|320352402|ref|YP_004193741.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120904|gb|ADW16450.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 415 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 24/42 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H LRH+ T L G L+ IQ + GH ++TT IY + Sbjct: 357 TLSPHALRHTAFTMLAQEGVKLQDIQKLAGHQDINTTMIYVH 398 >gi|322433741|ref|YP_004215953.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321161468|gb|ADW67173.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 395 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+ A+ L S G +I + G S+ YT V++ + YDQ +K Sbjct: 313 STHRLRHTMASRLASGGASFPTIMAAGGWKSPSSMMHYTKVDADQARHGYDQAMRRAEEK 372 Query: 64 DK 65 K Sbjct: 373 SK 374 >gi|294637853|ref|ZP_06716123.1| type 1 fimbriae regulatory protein FimB [Edwardsiella tarda ATCC 23685] gi|291088971|gb|EFE21532.1| type 1 fimbriae regulatory protein FimB [Edwardsiella tarda ATCC 23685] Length = 179 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+ L G D R IQ LGH + T YT N+ R ++ + + Sbjct: 101 ICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVRYTASNAARFQGVWQRKKRLV 160 Query: 61 T 61 T Sbjct: 161 T 161 >gi|266626173|ref|ZP_06119108.1| site-specific tyrosine recombinase [Clostridium hathewayi DSM 13479] gi|288861916|gb|EFC94214.1| site-specific tyrosine recombinase [Clostridium hathewayi DSM 13479] Length = 60 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 LRH++ T+LL G D +++Q + GH TT IY V + E++ Sbjct: 1 LRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELF 47 >gi|258513212|ref|YP_003189468.1| phage integrase [Acetobacter pasteurianus IFO 3283-01] gi|256635115|dbj|BAI01089.1| phage integrase [Acetobacter pasteurianus IFO 3283-01] gi|256638170|dbj|BAI04137.1| phage integrase [Acetobacter pasteurianus IFO 3283-03] gi|256641224|dbj|BAI07184.1| phage integrase [Acetobacter pasteurianus IFO 3283-07] gi|256644279|dbj|BAI10232.1| phage integrase [Acetobacter pasteurianus IFO 3283-22] gi|256647334|dbj|BAI13280.1| phage integrase [Acetobacter pasteurianus IFO 3283-26] gi|256650387|dbj|BAI16326.1| phage integrase [Acetobacter pasteurianus IFO 3283-32] gi|256653378|dbj|BAI19310.1| phage integrase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656431|dbj|BAI22356.1| phage integrase [Acetobacter pasteurianus IFO 3283-12] Length = 212 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 30/51 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR + + G++R++Q +LGHS+L +T Y V+ + + + + T Sbjct: 160 HSLRRTKVAMIYKRTGNIRAVQILLGHSKLDSTVRYLGVDVEDALALSEAT 210 >gi|239906586|ref|YP_002953327.1| putative molybdenum-pterin binding protein [Desulfovibrio magneticus RS-1] gi|239796452|dbj|BAH75441.1| putative molybdenum-pterin binding protein [Desulfovibrio magneticus RS-1] Length = 338 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +S TA LRHS A LL +G L +Q +LGHS + T IY Sbjct: 138 VSPTA--LRHSRAVELLRSGVPLPVVQMMLGHSSVVLTSIY 176 >gi|254441008|ref|ZP_05054501.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] gi|198251086|gb|EDY75401.1| site-specific recombinase, phage integrase family [Octadecabacter antarcticus 307] Length = 198 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 1 MSTTAHTLRHSFATH----LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + ++H+ R +F T+ + + GG LR +Q + GHS L TT+ Y + K I D Sbjct: 139 IGCSSHSGRRTFVTNAAQKITTVGGSLRDVQYLAGHSSLQTTERYIEYSEKARRSIVD 196 >gi|153007056|ref|YP_001381381.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152030629|gb|ABS28397.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 463 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV 44 H LRH+ + L+ +G DL ++Q IL HS TT++Y ++ Sbjct: 333 HDLRHTTGSLLIMSGADLAAVQRILRHSDPKLTTEVYAHL 372 >gi|42782203|ref|NP_979450.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196042844|ref|ZP_03110083.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196047844|ref|ZP_03115022.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|228950294|ref|ZP_04112470.1| Transposition regulatory protein TnpB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229112910|ref|ZP_04242440.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15] gi|42738128|gb|AAS42058.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196021100|gb|EDX59829.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196026328|gb|EDX64996.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|228670541|gb|EEL25855.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15] gi|228809381|gb|EEM55826.1| Transposition regulatory protein TnpB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 701 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ ++Q +L H+ T Y + Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 540 >gi|332674301|gb|AEE71118.1| integrase/recombinase [Helicobacter pylori 83] Length = 358 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RHSFAT + + D+ LGH LS+T+IY Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337 >gi|315123568|ref|YP_004065574.1| putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2 [Pseudoalteromonas sp. SM9913] gi|315017328|gb|ADT70665.1| putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2 [Pseudoalteromonas sp. SM9913] Length = 403 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + TAH LRH+ ATH + L+ + LGH++++TT QIY N K Sbjct: 347 AATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIK 392 >gi|307127283|ref|YP_003879314.1| integrase [Streptococcus pneumoniae 670-6B] gi|306484345|gb|ADM91214.1| integrase [Streptococcus pneumoniae 670-6B] Length = 361 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334 >gi|303239571|ref|ZP_07326097.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592949|gb|EFL62671.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 417 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT L+ G ++R++ S LGH+ STT Sbjct: 352 HCLRHTAATLLIHKGLNVRAVSSRLGHANTSTT 384 >gi|300117726|ref|ZP_07055504.1| Tn554-related, transposase B [Bacillus cereus SJ1] gi|298724893|gb|EFI65557.1| Tn554-related, transposase B [Bacillus cereus SJ1] Length = 701 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ ++Q +L H+ T Y + Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 540 >gi|269140380|ref|YP_003297081.1| probable DNA recombinase [Edwardsiella tarda EIB202] gi|267986041|gb|ACY85870.1| probable DNA recombinase [Edwardsiella tarda EIB202] Length = 179 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+ L G D R IQ LGH + T YT N+ R ++ + + Sbjct: 101 ICSHPHMLRHACGYALADRGIDTRLIQDYLGHRNIRHTVRYTASNAARFQGVWQRKKRLV 160 Query: 61 T 61 T Sbjct: 161 T 161 >gi|217970537|ref|YP_002355771.1| integrase [Thauera sp. MZ1T] gi|217507864|gb|ACK54875.1| integrase family protein [Thauera sp. MZ1T] Length = 394 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + +AH LRH+ +++ DLR ++ LGH ++TT +Y Sbjct: 334 AASAHWLRHTAGSNMAGAEVDLRFVRDNLGHESITTTSLY 373 >gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B] gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B] Length = 355 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH++A+ L+++G L +Q LGHS T Y++++ + + Sbjct: 295 HDLRHNYASMLVNSGHSLYEVQQALGHSDPKVTMRYSHLSKESL 338 >gi|317488602|ref|ZP_07947146.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832826|ref|ZP_08165557.1| integrase/recombinase, phage integrase family protein [Eggerthella sp. HGA1] gi|316912296|gb|EFV33861.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485824|gb|EGC88286.1| integrase/recombinase, phage integrase family protein [Eggerthella sp. HGA1] Length = 266 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + ++ D+ + ++GH + TT+IY Sbjct: 213 HSFRHRFAKNFIAKNPDIAFLADLMGHESIETTRIY 248 >gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 397 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FA+ L+ NG L ++ LGH +S T Sbjct: 313 HDLRHTFASLLIQNGESLAYVRDQLGHCSISLT 345 >gi|296164229|ref|ZP_06846822.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900420|gb|EFG79833.1| site specific recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 342 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 22/38 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH FAT L ++ + + +LGH + T+Q Y + Sbjct: 285 HALRHEFATQLANSDTSVYVLMKLLGHESMVTSQRYVD 322 >gi|294850413|ref|ZP_06791145.1| transposase transposon [Staphylococcus aureus A9754] gi|294822756|gb|EFG39193.1| transposase transposon [Staphylococcus aureus A9754] Length = 405 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHILRHTFCTNYANAGMNPKALQYIMGHANINMTLNY 378 >gi|294776003|ref|ZP_06741499.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294450141|gb|EFG18645.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 429 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+F T + L+N L+ + +LGH+ TQ Y V + + E + + Q Sbjct: 370 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 429 >gi|290891528|ref|ZP_06554586.1| hypothetical protein AWRIB429_1976 [Oenococcus oeni AWRIB429] gi|290478877|gb|EFD87543.1| hypothetical protein AWRIB429_1976 [Oenococcus oeni AWRIB429] Length = 324 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 S T H LRH+ A+ LL+NG ++ I LGH+ L T+ Sbjct: 285 SVTIHGLRHTHASLLLANGVSMQYISKRLGHANLMITE 322 >gi|223932876|ref|ZP_03624872.1| integrase family protein [Streptococcus suis 89/1591] gi|223898457|gb|EEF64822.1| integrase family protein [Streptococcus suis 89/1591] Length = 390 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQT 56 H RH+ A+ LL++G + +Q LGHSR+S T IY+++ N+K + Y++ Sbjct: 332 HGFRHTHASLLLNSGIPYKELQHRLGHSRISMTMDIYSHLSKENAKNAVAFYEKA 386 >gi|220909513|ref|YP_002484824.1| integrase family protein [Cyanothece sp. PCC 7425] gi|219866124|gb|ACL46463.1| integrase family protein [Cyanothece sp. PCC 7425] Length = 498 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+ T +++NG IQ LGH T +Y ++ + M + Sbjct: 330 HQFRHTVGTRMINNGVPQHIIQRYLGHESPEMTAVYAQIHDQTMKQ 375 >gi|120602084|ref|YP_966484.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562313|gb|ABM28057.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 372 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+F + + G L I ++GHS L T+ Y+ + Sbjct: 312 HTLRHTFGSWMAQRGVPLYVIGELMGHSTLEMTRRYSKL 350 >gi|327395182|dbj|BAK12604.1| phage integrase [Pantoea ananatis AJ13355] Length = 327 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 24/46 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + HT RH THL G L + + GH TTQIY +++ + + Sbjct: 258 STHTFRHLRLTHLARAGWKLHELATYAGHRDPRTTQIYIHLSGRDL 303 >gi|314931491|gb|EFS95322.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL067PA1] Length = 420 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HT R A+ L G D+++ SILGHS + T YT +N+ Sbjct: 339 HTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINA 379 >gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 331 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKR 48 + H LRH+ AT + +G D +++ ILGH + TT+IYT+++ ++ Sbjct: 262 STHKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQ 307 >gi|209559283|ref|YP_002285755.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131] gi|209540484|gb|ACI61060.1| Prophage ps2 probable integrase [Streptococcus pyogenes NZ131] Length = 379 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT+V E+ D Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374 >gi|169828995|ref|YP_001699153.1| integrase/recombinase [Lysinibacillus sphaericus C3-41] gi|168993483|gb|ACA41023.1| integrase/recombinase [Lysinibacillus sphaericus C3-41] Length = 349 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH +R +AT+L G D+ I L H LSTT Y ++S +++ Sbjct: 296 SAHAIRRLYATNLRKKGADVVLISKALSHKSLSTTTRYLGISSDDVLK 343 >gi|111221204|ref|YP_711998.1| integrase [Frankia alni ACN14a] gi|111148736|emb|CAJ60412.1| Integrase [Frankia alni ACN14a] Length = 405 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ A L+S G L SIQ LGH ++TT Sbjct: 314 HDLRHTHAAWLISAGRPLPSIQRRLGHRSITTT 346 >gi|29346005|ref|NP_809508.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253568594|ref|ZP_04846005.1| integrase [Bacteroides sp. 1_1_6] gi|29337899|gb|AAO75702.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251842667|gb|EES70747.1| integrase [Bacteroides sp. 1_1_6] Length = 318 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 23/39 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++T+RHS+AT G + I LGH + TTQIY Sbjct: 252 VTSYTIRHSWATTAKFRGVPIEMISESLGHKSIKTTQIY 290 >gi|315033819|gb|EFT45751.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] Length = 408 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+++ +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSAEVKERAVNKLELYQMQH 403 >gi|313906409|ref|ZP_07839747.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313468744|gb|EFR64108.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 354 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H R ++ + LL DL+++Q++LGH + TT Y Sbjct: 293 VTGHVFRKTYGS-LLYEASDLKNVQAVLGHESIVTTSTY 330 >gi|296165952|ref|ZP_06848417.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898696|gb|EFG78237.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 380 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 HT RHS+AT LL + + +LGH+ ++TT Sbjct: 319 HTFRHSYATELLRRQVPVEVVAHLLGHASIATT 351 >gi|228982672|ref|ZP_04142931.1| Integrase [Bacillus thuringiensis Bt407] gi|228776855|gb|EEM25163.1| Integrase [Bacillus thuringiensis Bt407] Length = 327 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + H LRH+FA++ + N + + SILGHS+ S T IY +V Sbjct: 268 SPHNLRHTFASYSVLNNISIPVLSSILGHSKKSITMDIYAHV 309 >gi|208434939|ref|YP_002266605.1| integrase-recombinase protein [Helicobacter pylori G27] gi|208432868|gb|ACI27739.1| integrase-recombinase protein [Helicobacter pylori G27] Length = 358 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H RHSFAT + + D+ LGH LS+T+IY Sbjct: 299 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIY 337 >gi|153809189|ref|ZP_01961857.1| hypothetical protein BACCAC_03500 [Bacteroides caccae ATCC 43185] gi|149128165|gb|EDM19385.1| hypothetical protein BACCAC_03500 [Bacteroides caccae ATCC 43185] Length = 319 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T++TLRHS+AT+ G + I LGH + TTQ Y Sbjct: 252 TVTSYTLRHSWATNAKYQGISIEMISESLGHKSIRTTQTY 291 >gi|37515379|emb|CAE48333.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|46092528|dbj|BAD14384.1| integrase [Pseudomonas aeruginosa] Length = 296 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 15/22 (68%), Positives = 18/22 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRS 25 T HTLRHSFAT LL +G D+R+ Sbjct: 275 TPHTLRHSFATALLRSGYDIRT 296 >gi|15612016|ref|NP_223668.1| integrase/recombinase (XERCD family) [Helicobacter pylori J99] gi|4155532|gb|AAD06529.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99] Length = 357 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332 >gi|15800030|ref|NP_286042.1| hypothetical protein Z0394 [Escherichia coli O157:H7 EDL933] gi|217324374|ref|ZP_03440458.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|331651224|ref|ZP_08352249.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M718] gi|25389776|pir||B90673 probable invertase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi|25518221|pir||F85523 probable invertase [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12513120|gb|AAG54650.1|AE005209_6 hypothetical protein Z0394 [Escherichia coli O157:H7 str. EDL933] gi|13359811|dbj|BAB33777.1| putative invertase [Escherichia coli O157:H7 str. Sakai] gi|217320595|gb|EEC29019.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|320192354|gb|EFW66998.1| putative phage integrase [Escherichia coli O157:H7 str. EC1212] gi|326343408|gb|EGD67172.1| putative phage integrase [Escherichia coli O157:H7 str. 1044] gi|326347228|gb|EGD70954.1| putative phage integrase [Escherichia coli O157:H7 str. 1125] gi|331050965|gb|EGI23017.1| type 1 fimbriae Regulatory protein FimB [Escherichia coli M718] Length = 52 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 24/48 (50%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 LRH+ L NG D R +Q LGH + T YT N+ R ++ + Sbjct: 2 LRHACGFALADNGVDTRLLQDYLGHRNIQHTVRYTASNAARFKGVWKK 49 >gi|257437573|ref|ZP_05613328.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199880|gb|EEU98164.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|295109631|emb|CBL23584.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 434 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 13/72 (18%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRL-------------STTQIYTNVNSKRMMEI 52 H LRH+ AT++ GD ++ +LGH+ + T Y +V +R E+ Sbjct: 338 HDLRHTAATNMHQLTGDFYTVGEVLGHTLAGIGVSLGLSMNFEAVTARYVDVRLERKKEV 397 Query: 53 YDQTHPSITQKD 64 D H ++ Q D Sbjct: 398 LDAYHGAVKQAD 409 >gi|221195318|ref|ZP_03568374.1| phage integrase family protein [Atopobium rimae ATCC 49626] gi|221185221|gb|EEE17612.1| phage integrase family protein [Atopobium rimae ATCC 49626] Length = 355 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 +RHSFAT ++ G D+ + +LGH+ ++TT Y + M++ +D Sbjct: 304 MRHSFATACMNAGMDVTKVSKLLGHTNITTTVSRYVRYKPEDMVKDFD 351 >gi|218887898|ref|YP_002437219.1| TOBE domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758852|gb|ACL09751.1| TOBE domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 362 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 LR S A LL +G L +Q +LGHS S T Y +V+++ M + Sbjct: 167 LRRSRAIELLRSGLPLPVVQRLLGHSTASLTAAYIDVSNEDMQRM 211 >gi|210632230|ref|ZP_03297247.1| hypothetical protein COLSTE_01141 [Collinsella stercoris DSM 13279] gi|210159688|gb|EEA90659.1| hypothetical protein COLSTE_01141 [Collinsella stercoris DSM 13279] Length = 373 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +LRHSFAT ++ G + + I+GH+ + TT Y Sbjct: 306 TMASLRHSFATACVNEGMEASKLSRIMGHADIKTTMRY 343 >gi|42780063|ref|NP_977310.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196047805|ref|ZP_03114983.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|42735981|gb|AAS39918.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196021061|gb|EDX59790.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] Length = 708 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H RH++A +L+ G D+ ++Q +L H+ T Y Sbjct: 503 HAFRHTYAVKMLNGGADILTVQELLAHASPEMTMRYA 539 >gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 367 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 H LR + AT+LL+ G +L+ I LGHS + TT IY +V Sbjct: 307 HGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAHV 346 >gi|160943619|ref|ZP_02090851.1| hypothetical protein FAEPRAM212_01111 [Faecalibacterium prausnitzii M21/2] gi|158445074|gb|EDP22077.1| hypothetical protein FAEPRAM212_01111 [Faecalibacterium prausnitzii M21/2] Length = 462 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHS 33 H LRHS AT+ LL +GGD +S+Q GH+ Sbjct: 356 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 384 >gi|94988426|ref|YP_596527.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS9429] gi|94541934|gb|ABF31983.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS9429] Length = 379 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT+V E+ D Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374 >gi|42528242|ref|NP_973340.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41819512|gb|AAS13259.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 269 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH +A + L D+ + ++GH + TT+IY + E+ D Sbjct: 216 HSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVD 264 >gi|532536|gb|AAB60031.1| ORF3 [Enterococcus faecalis] gi|1097930|prf||2114402AA ORF 3 Length = 361 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334 >gi|307545192|ref|YP_003897671.1| integrase family protein [Halomonas elongata DSM 2581] gi|307217216|emb|CBV42486.1| integrase family protein [Halomonas elongata DSM 2581] Length = 404 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 23/44 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+ TH G +LR + HSRL TT Y + ++ Sbjct: 334 TPHWLRHTALTHQAQAGIELRYLAETARHSRLDTTARYLHAEAE 377 >gi|303253788|ref|ZP_07339923.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248455|ref|ZP_07530475.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250673|ref|ZP_07532610.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307262546|ref|ZP_07544186.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302647372|gb|EFL77593.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855023|gb|EFM87206.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857281|gb|EFM89400.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306867758|gb|EFM99594.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 267 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA L D+ + ++GH + TT+IY Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIY 249 >gi|302540132|ref|ZP_07292474.1| LOW QUALITY PROTEIN: phage integrase family domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302457750|gb|EFL20843.1| LOW QUALITY PROTEIN: phage integrase family domain protein [Streptomyces himastatinicus ATCC 53653] Length = 359 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ ATH G L +Q +LGH +TT Y Sbjct: 293 HLLRHACATHRYEAGMSLWEVQKLLGHDWTTTTVRY 328 >gi|293369970|ref|ZP_06616537.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292634888|gb|EFF53410.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 406 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RH++AT L + G + I +LGH+ ++TT+IY Sbjct: 351 TTYVARHTYATVLRNEGVPVSIISPMLGHTSITTTEIY 388 >gi|270291611|ref|ZP_06197831.1| integrase [Pediococcus acidilactici 7_4] gi|270279930|gb|EFA25768.1| integrase [Pediococcus acidilactici 7_4] Length = 359 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV-------NSKRMMEIYDQ 55 T H LRHS A++LL G + + + LGH+ +S TQ +Y ++ +R MEI Sbjct: 289 TTHGLRHSHASYLLYRGISINYVSARLGHANVSITQRVYAHMLKEEKQREQERAMEILSM 348 Query: 56 THPSITQK 63 + P++ ++ Sbjct: 349 S-PNVPKR 355 >gi|254555639|ref|YP_003062056.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1] gi|254044566|gb|ACT61359.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1] Length = 385 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 35/53 (66%), Gaps = 2/53 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM-MEIYD 54 T H LRH+FA+ ++N +++++Q +GHS + T IY +++ + + ++YD Sbjct: 326 TVHGLRHTFASIQVANNINVKALQMQMGHSDIKITLNIYAHLSQQELSAQVYD 378 >gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 398 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+ +SNG L +Q +L H + TQ Y ++ + + Sbjct: 333 HGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAHLEDEAL 376 >gi|160960276|emb|CAP45546.1| integrase [Streptococcus pneumoniae] Length = 405 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 341 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 378 >gi|139473904|ref|YP_001128620.1| phage integrase [Streptococcus pyogenes str. Manfredo] gi|225871356|ref|YP_002747303.1| phage integrase [Streptococcus equi subsp. equi 4047] gi|134272151|emb|CAM30396.1| phage integrase [Streptococcus pyogenes str. Manfredo] gi|225700760|emb|CAW95414.1| phage integrase [Streptococcus equi subsp. equi 4047] Length = 379 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT+V E+ D Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374 >gi|317014414|gb|ADU81850.1| integrase/recombinase (XERCD family) protein [Helicobacter pylori Gambia94/24] Length = 357 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332 >gi|313112560|ref|ZP_07798223.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|310625126|gb|EFQ08418.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 466 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHS 33 H LRHS AT+ LL +GGD +S+Q GH+ Sbjct: 360 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 388 >gi|262383666|ref|ZP_06076802.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262294564|gb|EEY82496.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 429 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH++AT + +S G + ++ ++GH + TTQIY + ++++ E Sbjct: 352 HMGRHTYATQVCISQGVPIETLCKMMGHRSVQTTQIYAKITNQKVNE 398 >gi|237718113|ref|ZP_04548594.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452534|gb|EEO58325.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 422 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F + + G++ + + ++GH L +T IY +V + ++ D T + + + Sbjct: 333 HCSRHTFGILVQAVTGNIETTKKLMGHKSLKSTAIYADVLTNEKVKAVDNTKKAFRSRKQ 392 Query: 66 K 66 + Sbjct: 393 R 393 >gi|255037949|ref|YP_003088570.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950705|gb|ACT95405.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 406 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T H RH+FAT + LSN + ++ +LGH L T IY + ++ E Sbjct: 344 TLTFHIARHTFATTVTLSNKVPIETVSKMLGHRSLKQTMIYAKILDVKISE 394 >gi|15674956|ref|NP_269130.1| putative integrase [Streptococcus pyogenes M1 GAS] gi|13622101|gb|AAK33851.1| putative integrase - phage associated [Streptococcus pyogenes M1 GAS] Length = 379 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT+V E+ D Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374 >gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98] Length = 376 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H +R +F T L+ + + + + +LGH+ +ST+ IYT+V +R +E Sbjct: 304 HDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQIE 350 >gi|307823332|ref|ZP_07653561.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307735317|gb|EFO06165.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 311 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LR +F T LL G D + + + GH ++ TT +Y Sbjct: 257 SPHDLRRTFVTRLLEQGVDFNTARQLAGHEQIQTTALY 294 >gi|302334961|ref|YP_003800168.1| integrase family protein [Olsenella uli DSM 7084] gi|301318801|gb|ADK67288.1| integrase family protein [Olsenella uli DSM 7084] Length = 62 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T RHSFAT L GG + + ILGHS + TT Sbjct: 4 VTVENCRHSFATSYLHAGGRVEDLSRILGHSDIITT 39 >gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2] gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2] Length = 390 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+ + L +G ++ +Q+ LGH+ + TT N SKR E Sbjct: 322 TPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTTMDIYNHLSKRQTE 369 >gi|253990065|ref|YP_003041421.1| type 1 fimbriae regulatory recombinase protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781515|emb|CAQ84678.1| similar to type 1 fimbriae regulatory recombinase protein fimb o escherichia coli [Photorhabdus asymbiotica] Length = 206 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 24/48 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ L G D R IQ LGHS + T YT N +R ++ Sbjct: 135 HMLRHACGFALADRGVDTRLIQDYLGHSNIRHTVRYTASNVERFHGVW 182 >gi|94495316|ref|ZP_01301897.1| phage integrase family protein [Sphingomonas sp. SKA58] gi|94425582|gb|EAT10602.1| phage integrase family protein [Sphingomonas sp. SKA58] Length = 149 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 32/52 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H+LR + A+ + G+LR++Q +LGH+++ +T Y V+ + + + + T Sbjct: 97 HSLRRTKASIIYKATGNLRAVQILLGHTKIESTVRYLGVDVEDALTLAEGTE 148 >gi|308177820|ref|YP_003917226.1| phage integrase [Arthrobacter arilaitensis Re117] gi|307745283|emb|CBT76255.1| putative phage integrase [Arthrobacter arilaitensis Re117] Length = 371 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH FA+ L+++G D++ +Q+ + H+ TT Sbjct: 304 HDLRHFFASFLIASGEDVKKVQAAMRHASAKTT 336 >gi|154502513|ref|ZP_02039573.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149] gi|153796909|gb|EDN79329.1| hypothetical protein RUMGNA_00326 [Ruminococcus gnavus ATCC 29149] Length = 420 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 T H RH++ T++ ++G + +++Q ++GHS +S T IYT Sbjct: 338 PVTPHICRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNIYT 379 >gi|94990305|ref|YP_598405.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS10270] gi|94994227|ref|YP_602325.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS10750] gi|94543813|gb|ABF33861.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS10270] gi|94547735|gb|ABF37781.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS10750] Length = 379 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T+H RH+ + L N L++I +GH+ TT QIYT+V E+ D Sbjct: 323 TSHIFRHTLVSRLAENKVPLKTIMDRVGHADSKTTQQIYTHVTKSMKNEVVD 374 >gi|33867121|ref|NP_898679.1| putative DNA integrase/recombinase [Rhodococcus erythropolis] gi|33668955|gb|AAP73949.1| putative DNA integrase/recombinase [Rhodococcus erythropolis] Length = 419 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIY 41 T H LRHS A + ++ L ++ +LGH+ LSTT+IY Sbjct: 331 TLHDLRHSAARRMANDPHLSLVEVKEVLGHAHLSTTEIY 369 >gi|77163593|ref|YP_342118.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254435225|ref|ZP_05048732.1| site-specific recombinase, phage integrase family [Nitrosococcus oceani AFC27] gi|76881907|gb|ABA56588.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207088336|gb|EDZ65608.1| site-specific recombinase, phage integrase family [Nitrosococcus oceani AFC27] Length = 251 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 21/38 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRHS A++L NG L I +LGH L + Y + Sbjct: 194 HDLRHSAASYLAMNGATLAEIAEVLGHKTLQMVKRYAH 231 >gi|331004356|ref|ZP_08327830.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411160|gb|EGG90577.1| hypothetical protein HMPREF0491_02692 [Lachnospiraceae oral taxon 107 str. F0167] Length = 352 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 23/36 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LR ++ T+L GD+ + +LGHS ++TT+ Sbjct: 293 TPHKLRSTYGTNLYKETGDIYLVADVLGHSDVNTTK 328 >gi|325474567|gb|EGC77753.1| phage integrase family Site-specific recombinase [Treponema denticola F0402] Length = 269 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+ RH +A + L D+ + ++GH + TT+IY + E+ D Sbjct: 216 HSFRHRYAKNFLEKFNDISLLADLMGHESIETTRIYLRRTASEQRELVD 264 >gi|311697242|gb|ADQ00114.1| phage integrase family protein [marine bacterium HP15] Length = 418 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 +++ H LRH+ A+ + G ++R I LGHS T QIY N + Sbjct: 360 IASETHYLRHTGASQAIEGGANIRHISEELGHSSAGFTEQIYVNAD 405 >gi|241895633|ref|ZP_04782929.1| integrase [Weissella paramesenteroides ATCC 33313] gi|241871211|gb|EER74962.1| integrase [Weissella paramesenteroides ATCC 33313] Length = 358 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 3/48 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV--NSKR 48 T H LRH+ A+ LLS+G D++ + + LGH + T ++YT++ N KR Sbjct: 298 TFHGLRHTHASWLLSHGVDIQYVSARLGHKSVGMTLRVYTHMLDNLKR 345 >gi|326445404|ref|ZP_08220138.1| putative recombinase [Streptomyces clavuligerus ATCC 27064] Length = 375 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ ATH G L +Q +LGH +TT Y Sbjct: 309 HLLRHACATHNYERGMTLWEVQKVLGHDWATTTLRY 344 >gi|254393682|ref|ZP_05008807.1| phage integrase family protein [Streptomyces clavuligerus ATCC 27064] gi|197707294|gb|EDY53106.1| phage integrase family protein [Streptomyces clavuligerus ATCC 27064] Length = 358 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+ ATH G L +Q +LGH +TT Y Sbjct: 292 HLLRHACATHNYERGMTLWEVQKVLGHDWATTTLRY 327 >gi|187935337|ref|YP_001886583.1| DNA integration/recombination protein [Clostridium botulinum B str. Eklund 17B] gi|187723490|gb|ACD24711.1| DNA integration/recombination protein [Clostridium botulinum B str. Eklund 17B] Length = 337 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 23/38 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 S T H LR++FA L D+ ++ ILGHS ++ T+ Sbjct: 272 SITPHGLRNNFARRFLLASSDIHTLSKILGHSSVTVTE 309 >gi|169829222|ref|YP_001699380.1| phage integrase family site specific recombinase [Lysinibacillus sphaericus C3-41] gi|168993710|gb|ACA41250.1| site-specific recombinase (phage integrase family) [Lysinibacillus sphaericus C3-41] Length = 193 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 22/42 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLR +F H+ + D+ +Q I GHS T Y VN + Sbjct: 139 HTLRKTFGYHIYMDSKDVALLQDIFGHSSEYITLRYIGVNQE 180 >gi|50954597|ref|YP_061885.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951079|gb|AAT88780.1| phage-related integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 382 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ A+ +S G +++++Q +LGH+ S T YT++ Sbjct: 311 TPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYTDL 352 >gi|119714857|ref|YP_921822.1| phage integrase family protein [Nocardioides sp. JS614] gi|119535518|gb|ABL80135.1| phage integrase family protein [Nocardioides sp. JS614] Length = 329 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRH+ A +LL+ G D+ I LGH+ +T Y + + D+T P Q Sbjct: 254 TMHTLRHTAAMNLLAAGVDVAVIALWLGHADTHSTDGYLHADMAIKQAALDRTRPPDVQ 312 >gi|315655075|ref|ZP_07907977.1| integrase [Mobiluncus curtisii ATCC 51333] gi|315490556|gb|EFU80179.1| integrase [Mobiluncus curtisii ATCC 51333] Length = 412 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H RH+ AT LL+ G + I++ILGHS + T Y +V+ Sbjct: 345 HETRHTTATLLLAAGVEPEVIKAILGHSDIVTQATYQHVD 384 >gi|308513234|ref|YP_003933637.1| phage integrase family site-specific recombinase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|307346940|gb|ADN43924.1| site-specific recombinase, phage integrase family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 296 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 232 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 269 >gi|301311317|ref|ZP_07217244.1| transposase [Bacteroides sp. 20_3] gi|300830403|gb|EFK61046.1| transposase [Bacteroides sp. 20_3] Length = 411 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+F T + L+N L+ + +LGH+ TQ Y V + + E + + Q Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 411 >gi|119953753|ref|YP_950558.1| integrase [Streptococcus phage SMP] gi|118430565|gb|ABK91889.1| integrase [Streptococcus phage SMP] Length = 380 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSK 47 T+H RH+ + L N L++I +GH+ +TTQIYT+V K Sbjct: 324 TSHIFRHTLVSRLAENRVPLKAIMDRVGHADAKTTTQIYTHVTKK 368 >gi|327309842|ref|YP_004336740.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326955177|gb|AEA28873.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 337 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRH F T L G LR +Q GH+ TT+ Y Sbjct: 277 HTLRHGFVTAALDAGVSLRDVQDSAGHADPRTTRAY 312 >gi|307275978|ref|ZP_07557111.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|306507308|gb|EFM76445.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] Length = 382 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|228477659|ref|ZP_04062288.1| transposase from transposon [Streptococcus salivarius SK126] gi|228250548|gb|EEK09759.1| transposase from transposon [Streptococcus salivarius SK126] Length = 361 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 297 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 334 >gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae] gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae] Length = 319 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302 >gi|72383806|ref|YP_293160.1| Phage integrase [Ralstonia eutropha JMP134] gi|72123149|gb|AAZ65303.1| Phage integrase [Ralstonia eutropha JMP134] Length = 208 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 30/52 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HT+R + + + +LR++Q +LGH++L +T Y + +E+ +QT Sbjct: 156 HTMRRTKVSLIYRRTKNLRAVQLLLGHAKLESTVRYLGIEVDDALEMAEQTE 207 >gi|315173229|gb|EFU17246.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1346] Length = 382 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|288869864|ref|ZP_06112100.2| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288869311|gb|EFD01610.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 407 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH++ T+L+ + D +++Q + GH S T IY V R E+ + Q Sbjct: 344 TPHQLRHTYITNLIHSSVDPKTVQYLAGHESSKITMDIYAKVKYNRPDELVKSMGGAFAQ 403 Query: 63 KD 64 D Sbjct: 404 WD 405 >gi|256956495|ref|ZP_05560666.1| site-specific recombinase [Enterococcus faecalis DS5] gi|294780322|ref|ZP_06745691.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|256946991|gb|EEU63623.1| site-specific recombinase [Enterococcus faecalis DS5] gi|294452586|gb|EFG21019.1| site-specific recombinase, phage integrase family [Enterococcus faecalis PC1.1] gi|315034593|gb|EFT46525.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0027] Length = 382 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|256619518|ref|ZP_05476364.1| site-specific recombinase [Enterococcus faecalis ATCC 4200] gi|256599045|gb|EEU18221.1| site-specific recombinase [Enterococcus faecalis ATCC 4200] Length = 389 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 329 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 370 >gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413] gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413] Length = 320 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 24/40 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S + H R +F + LL +G D+ ++Q + GH+ +TT Y Sbjct: 255 SFSPHDFRRTFCSDLLDSGTDIVTVQKLAGHASPATTSKY 294 >gi|29376554|ref|NP_815708.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227555403|ref|ZP_03985450.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|29344018|gb|AAO81778.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227175446|gb|EEI56418.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|315167585|gb|EFU11602.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] Length = 382 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4] gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4] Length = 382 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 T H RH+ + L G ++ +Q LGHS + TT IY +V K Sbjct: 323 TPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYAHVTEK 367 >gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 280 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 21/36 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA D+ + +LGHS ++TT+IY Sbjct: 226 HNLRHLFAYSFYQMEKDIAKLADLLGHSNINTTRIY 261 >gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 279 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 21/36 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA D+ + +LGHS ++TT+IY Sbjct: 225 HNLRHLFACSFYQMEKDIAKLADLLGHSNINTTRIY 260 >gi|315171645|gb|EFU15662.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1342] Length = 382 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|295113292|emb|CBL31929.1| Site-specific recombinase XerD [Enterococcus sp. 7L76] Length = 382 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|260577793|ref|ZP_05845728.1| integrase [Corynebacterium jeikeium ATCC 43734] gi|258604188|gb|EEW17430.1| integrase [Corynebacterium jeikeium ATCC 43734] Length = 391 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H+ RH AT LLS G ++++Q LGHS T Sbjct: 316 TPHSFRHFHATELLSAGVPVKAVQRRLGHSSARVT 350 >gi|296139147|ref|YP_003646390.1| integrase family protein [Tsukamurella paurometabola DSM 20162] gi|296027281|gb|ADG78051.1| integrase family protein [Tsukamurella paurometabola DSM 20162] Length = 509 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 24/35 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 TAH+LRH++A+ +S G + I S GH+ ++TT Sbjct: 438 TAHSLRHTYASFCVSAGLHPKQISSYCGHASVNTT 472 >gi|254477630|ref|ZP_05091016.1| phage integrase [Ruegeria sp. R11] gi|214031873|gb|EEB72708.1| phage integrase [Ruegeria sp. R11] Length = 210 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H++R + T + G+LR++Q +LGH+++ +T Y V + + I Sbjct: 158 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAI 204 >gi|119473089|ref|ZP_01614864.1| putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2 [Alteromonadales bacterium TW-7] gi|119444591|gb|EAW25904.1| putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2 [Alteromonadales bacterium TW-7] Length = 403 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + TAH LRH+ ATH + L+ + LGH++++TT QIY N K Sbjct: 347 AATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIK 392 >gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36] gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36] Length = 353 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT +L ++ + +LGH+ + TT Y +V + + + D Sbjct: 286 HDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDLRDALD 334 >gi|315146182|gb|EFT90198.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4244] Length = 389 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 329 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 370 >gi|257087242|ref|ZP_05581603.1| site-specific recombinase [Enterococcus faecalis D6] gi|307270291|ref|ZP_07551599.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|256995272|gb|EEU82574.1| site-specific recombinase [Enterococcus faecalis D6] gi|306513345|gb|EFM81969.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4248] gi|315026044|gb|EFT37976.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2137] Length = 382 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|207093349|ref|ZP_03241136.1| integrase/recombinase (xerD) [Helicobacter pylori HPKX_438_AG0C1] Length = 93 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYD 54 T H RHSFAT + + D+ LGH LS+T+IY + +K++ I+D Sbjct: 34 TGLHLFRHSFATLVYAKSRDIVLTSRALGHQSLSSTKIYIHTAQEYNKQVASIFD 88 >gi|134278334|ref|ZP_01765048.1| transposase IS66 [Burkholderia pseudomallei 305] gi|134250118|gb|EBA50198.1| transposase IS66 [Burkholderia pseudomallei 305] Length = 149 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L ++ L H+ +STT Y + + + +DQ Sbjct: 87 CASPHWMRHTHASHALARGAELIMVRDNLRHASISTTSTYLHSDEVQRARQFDQA 141 >gi|266619589|ref|ZP_06112524.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288868877|gb|EFD01176.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 279 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH FA D+ + ILGH+ + TT+IYT+ + + Sbjct: 225 HNLRHLFALTYYRLEKDIVRLADILGHANIETTRIYTSTTEEECL 269 >gi|300860289|ref|ZP_07106376.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|300849328|gb|EFK77078.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TUSoD Ef11] gi|323481177|gb|ADX80616.1| phage integrase family protein [Enterococcus faecalis 62] Length = 382 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|213616424|ref|ZP_03372250.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 133 Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 25/53 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++ H LRH+ L G D R IQ LGH + T YT N+ R I+ Sbjct: 75 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 127 >gi|190150796|ref|YP_001969321.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264085|ref|ZP_07545682.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915927|gb|ACE62179.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870563|gb|EFN02310.1| Phage integrase/recombinase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 267 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA L D+ + ++GH + TT+IY Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIY 249 >gi|160887405|ref|ZP_02068408.1| hypothetical protein BACOVA_05424 [Bacteroides ovatus ATCC 8483] gi|156107816|gb|EDO09561.1| hypothetical protein BACOVA_05424 [Bacteroides ovatus ATCC 8483] Length = 422 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H RH+F + + G++ + + ++GH L +T IY +V + ++ D T + + + Sbjct: 333 HCARHTFGILVQAVTGNIETTKKLMGHKSLKSTSIYADVLTNEKVKAVDNTKKAFRGRKQ 392 Query: 66 K 66 + Sbjct: 393 R 393 >gi|77362462|ref|YP_342036.1| putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2 [Pseudoalteromonas haloplanktis TAC125] gi|76877373|emb|CAI89590.1| putative site-specific tyrosine integrase/recombinase; may be used for the termination of replication of chromosome 2 [Pseudoalteromonas haloplanktis TAC125] Length = 403 Score = 34.3 bits (77), Expect = 6.6, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + TAH LRH+ ATH + L+ + LGH++++TT QIY N K Sbjct: 347 AATAHWLRHTGATH-DAQTRPLKHLSEDLGHAKIATTDQIYIQTNIK 392 >gi|229545371|ref|ZP_04434096.1| phage integrase family site specific recombinase [Enterococcus faecalis TX1322] gi|229549618|ref|ZP_04438343.1| phage integrase family site specific recombinase [Enterococcus faecalis ATCC 29200] gi|255972315|ref|ZP_05422901.1| predicted protein [Enterococcus faecalis T1] gi|256962649|ref|ZP_05566820.1| site-specific recombinase [Enterococcus faecalis HIP11704] gi|257079417|ref|ZP_05573778.1| site-specific recombinase [Enterococcus faecalis JH1] gi|257090319|ref|ZP_05584680.1| predicted protein [Enterococcus faecalis CH188] gi|307272763|ref|ZP_07554010.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|307295840|ref|ZP_07575672.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|312902821|ref|ZP_07762025.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|229305283|gb|EEN71279.1| phage integrase family site specific recombinase [Enterococcus faecalis ATCC 29200] gi|229309478|gb|EEN75465.1| phage integrase family site specific recombinase [Enterococcus faecalis TX1322] gi|255963333|gb|EET95809.1| predicted protein [Enterococcus faecalis T1] gi|256953145|gb|EEU69777.1| site-specific recombinase [Enterococcus faecalis HIP11704] gi|256987447|gb|EEU74749.1| site-specific recombinase [Enterococcus faecalis JH1] gi|256999131|gb|EEU85651.1| predicted protein [Enterococcus faecalis CH188] gi|306496171|gb|EFM65750.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306510377|gb|EFM79400.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|310633875|gb|EFQ17158.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|315028564|gb|EFT40496.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] gi|315159447|gb|EFU03464.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] gi|315161436|gb|EFU05453.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315576751|gb|EFU88942.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 389 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 329 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 370 >gi|229018890|ref|ZP_04175734.1| Phage integrase [Bacillus cereus AH1273] gi|229025129|ref|ZP_04181555.1| Phage integrase [Bacillus cereus AH1272] gi|228736164|gb|EEL86733.1| Phage integrase [Bacillus cereus AH1272] gi|228742399|gb|EEL92555.1| Phage integrase [Bacillus cereus AH1273] Length = 211 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H+LRH+ A LL +G ++ IQ LGH + T +Y++++ K Sbjct: 151 HSLRHTHAVLLLESGASMKYIQDRLGHKSIEITANVYSHISDK 193 >gi|255279724|ref|ZP_05344279.1| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255269497|gb|EET62702.1| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 280 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA DL + ILGHS + TT+IY Sbjct: 226 HNLRHLFAVIFHRACNDLVKLADILGHSSIETTRIY 261 >gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM 15897] gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM 15897] Length = 354 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H R + AT L G + +Q +LGH ++ TT IY ++K Sbjct: 303 HRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKTDTK 344 >gi|168484170|ref|ZP_02709122.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|169832472|ref|YP_001693830.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae Hungary19A-6] gi|225858151|ref|YP_002739661.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|168994974|gb|ACA35586.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] gi|172042548|gb|EDT50594.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|225721376|gb|ACO17230.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|332203462|gb|EGJ17529.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Streptococcus pneumoniae GA47368] Length = 73 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT G L +I L HS TTQIY N ++ M + + S+ Q Sbjct: 15 TPHKLRHTGATLAKKAGMSLEAISKALTHSDTGTTQIYVNTSNVVPMTVGEFALKSLKQ 73 >gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM 17241] gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM 17241] Length = 354 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H RH+FA+ + +G +Q ILGH+ STT +IY + + Sbjct: 303 HCTRHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVHAD 343 >gi|158522916|ref|YP_001530786.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511742|gb|ABW68709.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 357 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRHS A+ + N + +IQ ILGH TT+IY Sbjct: 291 HALRHSGASIMDGNDVPIAAIQRILGHENRKTTEIY 326 >gi|78777815|ref|YP_394130.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498355|gb|ABB44895.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 150 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 22/38 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH L++N L I LGHS+++TTQ Y+N Sbjct: 94 HDFRHLLGFTLVNNNVPLEYISKALGHSKITTTQRYSN 131 >gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 320 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT+IY Sbjct: 268 HGLRATAATNALEHEADIAKVQVWLGHANISTTRIY 303 >gi|324323949|gb|ADY24992.1| integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 +AH+LRHSF +L+ L+ I + GH L TT+ Y Sbjct: 240 SAHSLRHSFCRNLVDANQPLQIIAQLAGHESLETTRRY 277 >gi|237750699|ref|ZP_04581179.1| phage integrase [Helicobacter bilis ATCC 43879] gi|229373789|gb|EEO24180.1| phage integrase [Helicobacter bilis ATCC 43879] Length = 182 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 24/35 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T ++ RH+FA+ LS G DL I ++LGH +STT Sbjct: 120 TLYSTRHTFASLSLSYGEDLLWIANMLGHKDVSTT 154 >gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676] gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676] Length = 387 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMME 51 T H RH+ A HLL +G +++ + LGHS + T +Y ++ +K M E Sbjct: 319 TLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTANVYLHI-TKSMEE 366 >gi|167462646|ref|ZP_02327735.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 232 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 18/33 (54%), Positives = 19/33 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS LL N DL+ IQ LGHS TT Sbjct: 165 HDLRHSHVAILLENETDLKIIQERLGHSSYQTT 197 >gi|150399016|ref|YP_001322783.1| phage integrase family protein [Methanococcus vannielii SB] gi|150011719|gb|ABR54171.1| phage integrase family protein [Methanococcus vannielii SB] Length = 326 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 22/37 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H+LRH A LL G + ++ LGH+ + TT IY+ Sbjct: 273 HSLRHGRAVDLLGKGVPIDVVKEYLGHTSIETTLIYS 309 >gi|90961706|ref|YP_535622.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90820900|gb|ABD99539.1| Phage integrase [Lactobacillus salivarius UCC118] gi|300214507|gb|ADJ78923.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 373 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT--------QIYTNVNSKRMMEIYDQTH 57 H+LRH+ +LLS DL I LGHS +STT Y N ++ I D+ Sbjct: 301 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKLF 360 Query: 58 PSITQKDKKN 67 T DKKN Sbjct: 361 DD-TVDDKKN 369 >gi|254432223|ref|ZP_05045926.1| phage integrase family [Cyanobium sp. PCC 7001] gi|197626676|gb|EDY39235.1| phage integrase family [Cyanobium sp. PCC 7001] Length = 60 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 21/42 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT R SFAT NG L +I+ GH L Y +V S+ Sbjct: 8 HTFRRSFATTAAQNGAALETIRRFTGHKSLDQLSRYIDVTSR 49 >gi|257077138|ref|ZP_05571499.1| site-specific integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 67 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 ++ N DL S++ +LGH L+TT IY+ +N++ +E Sbjct: 1 MIKNDIDLESLRQMLGHEDLATTGIYSRMNTEEALE 36 >gi|119945025|ref|YP_942705.1| hypothetical protein Ping_1279 [Psychromonas ingrahamii 37] gi|119863629|gb|ABM03106.1| hypothetical protein Ping_1279 [Psychromonas ingrahamii 37] Length = 81 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 20/34 (58%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 H F T LL N D+R+++ +LGH L +T I Sbjct: 39 VFWHYFGTDLLQNRTDIRTVEELLGHPALYSTDI 72 >gi|325288243|ref|YP_004264424.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324963644|gb|ADY54423.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 537 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 26/42 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+ R +F T LL N L ++ +LGHS++ + + Y +V+ + Sbjct: 477 HSFRRAFGTRLLQNEIPLELLRQLLGHSKIDSAKPYLSVDEQ 518 >gi|301300085|ref|ZP_07206303.1| site-specific recombinase, phage integrase family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852317|gb|EFK79983.1| site-specific recombinase, phage integrase family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 373 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT--------QIYTNVNSKRMMEIYDQTH 57 H+LRH+ +LLS DL I LGHS +STT Y N ++ I D+ Sbjct: 303 HSLRHTHVAYLLSENIDLYIISKRLGHSDISTTSRVYSYLIDEYKNRADNKIENIVDKLF 362 Query: 58 PSITQKDKKN 67 T DKKN Sbjct: 363 DD-TVDDKKN 371 >gi|257437687|ref|ZP_05613442.1| putative bacteriophage integrase [Faecalibacterium prausnitzii A2-165] gi|257199994|gb|EEU98278.1| putative bacteriophage integrase [Faecalibacterium prausnitzii A2-165] Length = 466 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHS 33 H LRHS AT+ LL +GGD +S+Q GH+ Sbjct: 360 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 388 >gi|256853560|ref|ZP_05558925.1| site-specific recombinase [Enterococcus faecalis T8] gi|256710503|gb|EEU25546.1| site-specific recombinase [Enterococcus faecalis T8] gi|315143469|gb|EFT87485.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] gi|315157213|gb|EFU01230.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0043] Length = 382 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|32471271|ref|NP_864264.1| integrase [Rhodopirellula baltica SH 1] gi|32396973|emb|CAD71943.1| probable integrase [Rhodopirellula baltica SH 1] Length = 71 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 3/43 (6%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYDQ 55 LL G D+R IQ +LGH+ + TT+I T N N +++ + D+ Sbjct: 14 LLWQGTDIRQIQQLLGHNDVKTTEIDTHVRNPNEAKVVSLLDR 56 >gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 384 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+ ++ G L I +LGH++ TT Y ++ ++ + D ++ Q Sbjct: 325 HDLRHTFASTAVAAGQGLPMIGKLLGHTQAQTTARYAHLAAEPVKMAADAVAQNLRQ 381 >gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 384 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H RH+ A+ L +G ++ +Q LGH + TT IYT+V Sbjct: 327 HGFRHTHASLLFESGASIKEVQDRLGHENIKTTMDIYTHV 366 >gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis CI] gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus biovar anthracis str. CI] Length = 317 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+LRH + + L+ G +Q ++ HS++ TT Y + + + E ++ +P Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311 >gi|257422176|ref|ZP_05599166.1| recombinase [Enterococcus faecalis X98] gi|312951221|ref|ZP_07770123.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|257164000|gb|EEU93960.1| recombinase [Enterococcus faecalis X98] gi|310630755|gb|EFQ14038.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0102] gi|315031051|gb|EFT42983.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] Length = 382 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|228955380|ref|ZP_04117385.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804172|gb|EEM50786.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 383 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTHPS 59 T H+LRH+ A+ LL NG +++ I LGH + T Q Y++V ++ I DQT + Sbjct: 318 TCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDEMEQKESRIVDQTMLN 377 Query: 60 ITQ 62 + Q Sbjct: 378 LFQ 380 >gi|212695232|ref|ZP_03303360.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855] gi|212662142|gb|EEB22716.1| hypothetical protein BACDOR_04770 [Bacteroides dorei DSM 17855] Length = 411 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+F T + L+N L+ + +LGH+ TQ Y V + + E + + Q Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNNVKERLAQ 411 >gi|227885195|ref|ZP_04003000.1| outer membrane usher protein FimD precursor [Escherichia coli 83972] gi|158117666|gb|ABW16854.1| FimB/FimD fusion [Escherichia coli] gi|227838024|gb|EEJ48490.1| outer membrane usher protein FimD precursor [Escherichia coli 83972] gi|307556555|gb|ADN49330.1| outer membrane usher protein FimD precursor [Escherichia coli ABU 83972] Length = 840 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHS L + G D R IQ LGH + T YT N+ R+ + Sbjct: 141 HMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRLRD 186 >gi|71737173|ref|YP_273416.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557726|gb|AAZ36937.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322897|gb|EFW78988.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] gi|320329794|gb|EFW85782.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 382 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 8/44 (18%) Query: 6 HTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIY 41 H LRH++ATH L SNG D L +Q LGHS + TT +Y Sbjct: 313 HMLRHTYATHTLVSLQRNPSNGLDPLVFLQRQLGHSSIQTTMVY 356 >gi|332638801|ref|ZP_08417664.1| integrase [Weissella cibaria KACC 11862] Length = 363 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 H LRHS ++LLS+G D+ LGHS +S TQ Sbjct: 304 HGLRHSHVSYLLSSGVDISYASKRLGHSNISITQ 337 >gi|291542126|emb|CBL15236.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 392 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRHS A++LL+ G + +Q LGHS +TT Y +V+ + I Sbjct: 333 HDLRHSVASNLLNMGFTVVQVQEWLGHSSAATTLNFYAHVDKTSKLNI 380 >gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 360 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + H RH++AT LL G ++ +LGH+ + TT IY++V S+ Sbjct: 299 IKVYPHLFRHTYATRLLKAGYSPERVKYLLGHTSIQTTLDIYSHVISE 346 >gi|146337601|ref|YP_001202649.1| putative phage related integrase [Bradyrhizobium sp. ORS278] gi|146190407|emb|CAL74406.1| putative phage related integrase [Bradyrhizobium sp. ORS278] Length = 429 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T+H LRHS+++ G + +I++++GHSR S T+ Y Sbjct: 355 TSHGLRHSYSSTAEDLGFSIPTIKALIGHSRASVTEGY 392 >gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16] Length = 379 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS--ITQ 62 H LRH+ AT D++ +Q LGHS++ TT +Y + + + + E +++ + IT+ Sbjct: 312 HLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHAFHITK 371 Query: 63 KDKKN 67 K K+ Sbjct: 372 KSGKD 376 >gi|118477873|ref|YP_895024.1| phage integrase [Bacillus thuringiensis str. Al Hakam] gi|118417098|gb|ABK85517.1| phage integrase [Bacillus thuringiensis str. Al Hakam] Length = 317 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+LRH + + L+ G +Q ++ HS++ TT Y + + + E ++ +P Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311 >gi|295110017|emb|CBL23970.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 100 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQTH 57 + T H+ RH+F T + +G ++ I GHS T+ YT++ K E YD+ + Sbjct: 37 LEVTPHSFRHTFVTRCVRSGMGPATVGKISGHSTQKMTEYYTHLEQGYVKDEYERYDKKY 96 >gi|228968233|ref|ZP_04129231.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar sotto str. T04001] gi|228791406|gb|EEM39010.1| Integrase (Phage-related protein) [Bacillus thuringiensis serovar sotto str. T04001] Length = 383 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQTHPS 59 T H+LRH+ A+ LL NG +++ I LGH + T Q Y++V ++ I DQT + Sbjct: 318 TCHSLRHTHASILLYNGVNIKYISRRLGHKDIVITLQTYSHVLDEMEQKESRIVDQTMLN 377 Query: 60 ITQ 62 + Q Sbjct: 378 LFQ 380 >gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680] gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 393 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH AT L + G R I ILGHS++S T +YT+V ++D +I+ D Sbjct: 320 HDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHV-------VHDTQREAISHMD 372 Query: 65 K 65 + Sbjct: 373 R 373 >gi|325846686|ref|ZP_08169601.1| site-specific tyrosine recombinase XerC domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481444|gb|EGC84485.1| site-specific tyrosine recombinase XerC domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 49 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 24/28 (85%) Query: 22 DLRSIQSILGHSRLSTTQIYTNVNSKRM 49 D+R+++ +LGH +STTQIYT+++++ + Sbjct: 8 DIRALKDVLGHESVSTTQIYTHLDNEDL 35 >gi|313678682|ref|YP_004056422.1| site-specific recombinase, phage integrase family [Mycoplasma bovis PG45] gi|312950469|gb|ADR25064.1| site-specific recombinase, phage integrase family [Mycoplasma bovis PG45] Length = 265 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH +A + L D+ + I+GH + TT+IY Sbjct: 212 HSFRHLYAKNFLEKFNDISLLADIMGHESIETTRIY 247 >gi|298388141|ref|ZP_06997683.1| integrase [Bacteroides sp. 1_1_14] gi|298259097|gb|EFI01979.1| integrase [Bacteroides sp. 1_1_14] Length = 413 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS L+ T+ Y Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLAVTENY 390 >gi|228987487|ref|ZP_04147606.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772219|gb|EEM20666.1| Phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 398 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 H LRH+ A LL G +++ IQ LGH + T+ IY++V K Sbjct: 336 VHGLRHTHAVLLLEAGVEMKYIQERLGHKSIEITSNIYSHVTPK 379 >gi|194466741|ref|ZP_03072728.1| integrase family protein [Lactobacillus reuteri 100-23] gi|194453777|gb|EDX42674.1| integrase family protein [Lactobacillus reuteri 100-23] Length = 156 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH +LLS G D+ +I LGH +STT Sbjct: 83 HSLRHVHVAYLLSQGVDIYAISQRLGHKDISTT 115 >gi|322375625|ref|ZP_08050137.1| prophage Sa05, site-specific recombinase, phage integrase family [Streptococcus sp. C300] gi|321279333|gb|EFX56374.1| prophage Sa05, site-specific recombinase, phage integrase family [Streptococcus sp. C300] Length = 388 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMMEIYDQT 56 S + H RH+ A+ LL+ G + IQ+ LGHS++S T Y+++ + KR + I+++ Sbjct: 323 SVSFHAFRHTHASILLNAGVGYKEIQTRLGHSKISITMDTYSHLSKDSKKRTVSIFEKV 381 >gi|315164754|gb|EFU08771.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1302] Length = 382 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 322 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 363 >gi|312901685|ref|ZP_07760954.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] gi|311291154|gb|EFQ69710.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0470] Length = 421 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 22/44 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H RH+F+T G + I +L HS + T+IY N S Sbjct: 343 ATPHMFRHTFSTLAYEGGATMEQISQMLTHSDTNITKIYINTES 386 >gi|149186687|ref|ZP_01864998.1| phage integrase [Erythrobacter sp. SD-21] gi|148829595|gb|EDL48035.1| phage integrase [Erythrobacter sp. SD-21] Length = 255 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 24/40 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H L+H+ AT L+ +L + +LGH+ + TTQ Y N N Sbjct: 191 HDLQHTGATRLVRAVPNLELARQLLGHADIKTTQKYANTN 230 >gi|124006309|ref|ZP_01691144.1| phage integrase family protein [Microscilla marina ATCC 23134] gi|123988233|gb|EAY27891.1| phage integrase family protein [Microscilla marina ATCC 23134] Length = 400 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H+LRH+ +L +G L +Q L H+ TT +Y N K++ E++ Sbjct: 350 HSLRHTCGQQMLESGNPLEFVQRQLRHASTDTTAVYVN---KKLDEMF 394 >gi|322375862|ref|ZP_08050373.1| integrase/recombinase, phage integrase family [Streptococcus sp. C300] gi|321279130|gb|EFX56172.1| integrase/recombinase, phage integrase family [Streptococcus sp. C300] Length = 404 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 25/49 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ AT G L +I L HS TTQIY N ++ M + Sbjct: 347 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAV 395 >gi|309798727|ref|ZP_07692992.1| integrase/recombinase, phage integrase family [Streptococcus infantis SK1302] gi|308117670|gb|EFO55081.1| integrase/recombinase, phage integrase family [Streptococcus infantis SK1302] Length = 73 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT G L +I L HS TTQIY N ++ M + + S+ Q Sbjct: 15 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMTVGEFALKSLKQ 73 >gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio parahaemolyticus AQ4037] gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio parahaemolyticus AQ4037] Length = 385 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LR ++AT +L D+R Q LGHS ++ T+ Y Sbjct: 322 TIHDLRRTYATQMLIATNDIRLAQQSLGHSNVNVTERYA 360 >gi|226366647|ref|YP_002784430.1| tyrosine recombinase [Rhodococcus opacus B4] gi|226245137|dbj|BAH55485.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 307 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 23/45 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 AH LRHS A +L GG + +LGH+ T Y++ + M Sbjct: 251 AHRLRHSAARAVLVGGGTFEEVGELLGHATRQVTMAYSSFDLASM 295 >gi|144901242|emb|CAM78106.1| Phage-related integrase, fragment [Magnetospirillum gryphiswaldense MSR-1] Length = 190 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 23/39 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFA+ S G L+ + ILGHS TT Y ++ Sbjct: 127 HDLRHSFASTAASAGVPLQVLGGILGHSSPQTTARYAHL 165 >gi|44286|emb|CAA37686.1| integrase [Mycobacterium fortuitum] gi|226924|prf||1611403A sul3 assocd ORF 2M Length = 303 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 15/21 (71%), Positives = 17/21 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLR 24 T HTLRHSFAT LL +G D+R Sbjct: 275 TPHTLRHSFATALLRSGYDIR 295 >gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] Length = 304 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AHT RH+F + G ++Q ++ HS ++ T+ Y + + E D+ +P Sbjct: 244 SAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYAAMWGNDLREQNDKFNP 298 >gi|288871715|ref|ZP_06118720.2| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] gi|288862309|gb|EFC94607.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] Length = 143 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 21/36 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH FA D+ + +LGHS ++TT+IY Sbjct: 89 HNLRHLFARSFYEIDKDIAKLADVLGHSSINTTRIY 124 >gi|284031312|ref|YP_003381243.1| integrase family protein [Kribbella flavida DSM 17836] gi|283810605|gb|ADB32444.1| integrase family protein [Kribbella flavida DSM 17836] Length = 463 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 23/36 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH++ T L ++ +Q+ +GH+ ++TTQ Y Sbjct: 344 HALRHAYVTIALEQDARIQHVQADVGHASIATTQYY 379 >gi|326203040|ref|ZP_08192906.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325986686|gb|EGD47516.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 201 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 HTLR +F H NG L + I HS S T Y + ++ ++Y Q++ Sbjct: 148 HTLRKTFGYHAFQNGTSLELLMDIFNHSSKSQTLRYIGITEEQKKDVYLQSN 199 >gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 317 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+LRH + + L+ G +Q ++ HS++ TT Y + + + E ++ +P Sbjct: 256 VSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYVTLWGQSLQEGNEKGNP 311 >gi|431134|gb|AAC36984.1| ORF4 [Enterococcus faecalis] Length = 324 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 260 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 297 >gi|532537|gb|AAB60032.1| ORF4 [Enterococcus faecalis] gi|209969466|dbj|BAG80637.1| integrase [Streptococcus parauberis] gi|1097931|prf||2114402AB ORF 4 Length = 324 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 26/38 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+LRH+F T+ + G + +++Q I+GH+ ++ T Y Sbjct: 260 TPHSLRHTFCTNYANAGMNPKALQYIMGHANIAMTLNY 297 >gi|325264365|ref|ZP_08131096.1| putative integrase/recombinase, phage integrase family [Clostridium sp. D5] gi|324030436|gb|EGB91720.1| putative integrase/recombinase, phage integrase family [Clostridium sp. D5] Length = 279 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH FA + +L + ILGHS + TT+IY Sbjct: 225 HNLRHLFARSFYAVEKNLSHLADILGHSSIETTRIYV 261 >gi|317010220|gb|ADU80800.1| integrase/recombinase XercD family protein [Helicobacter pylori India7] Length = 357 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332 >gi|288922104|ref|ZP_06416309.1| hypothetical protein FrEUN1fDRAFT_6007 [Frankia sp. EUN1f] gi|288346581|gb|EFC80905.1| hypothetical protein FrEUN1fDRAFT_6007 [Frankia sp. EUN1f] Length = 94 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHS 33 H LRH AT LL+ G D++ + +LGH+ Sbjct: 28 HDLRHGAATMLLATGADMKLVADVLGHA 55 >gi|302878058|ref|YP_003846622.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302580847|gb|ADL54858.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 353 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LRH + ++ G L +QS+ GHS + YT++++ R+ Sbjct: 303 TFHDLRHEATSRMVEAGLSLLEVQSVTGHSNAEMVKRYTHLDTLRL 348 >gi|237710116|ref|ZP_04540597.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA] gi|229455578|gb|EEO61299.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 9_1_42FAA] Length = 225 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TT IY + +++ Sbjct: 157 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKI 203 >gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC 29799] gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC 29799] Length = 377 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+FAT + G L I LGHS +TT +IYT++ Sbjct: 319 TLHGLRHTFATVASAQGAPLFDIGKALGHSTPATTGRIYTHL 360 >gi|120537160|ref|YP_957217.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120553151|ref|YP_957502.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120323000|gb|ABM17315.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120326995|gb|ABM21302.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 459 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 25/48 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 TTAH RHS+ L D I++ L H + + Q+YT + K+M Sbjct: 387 GTTAHAHRHSYGQALADANADSLIIKNALHHKSIESQQVYTELTDKQM 434 >gi|325661845|ref|ZP_08150466.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471823|gb|EGC75040.1| hypothetical protein HMPREF0490_01202 [Lachnospiraceae bacterium 4_1_37FAA] Length = 377 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYT 42 T H RH++ T++ ++G + +++Q ++GHS +S T +YT Sbjct: 297 TPHVCRHTYCTNMANSGMNPKTLQYLMGHSDVSVTLNVYT 336 >gi|322376325|ref|ZP_08050818.1| integrase/recombinase, phage integrase family [Streptococcus sp. M334] gi|321282132|gb|EFX59139.1| integrase/recombinase, phage integrase family [Streptococcus sp. M334] Length = 78 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 25/49 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ AT G L +I L HS TTQIY N ++ M + Sbjct: 20 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAV 68 >gi|313112790|ref|ZP_07798437.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624860|gb|EFQ08168.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 229 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H LRH+FAT L D++++ +LGHS + T + Y + + KR Sbjct: 173 PHALRHTFATTCLQAHCDIKTLSELLGHSDAAVTLKKYVHSDMKR 217 >gi|294495142|ref|YP_003541635.1| integrase family protein [Methanohalophilus mahii DSM 5219] gi|292666141|gb|ADE35990.1| integrase family protein [Methanohalophilus mahii DSM 5219] Length = 176 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQT 56 HT+R S A HLL G L + L + LSTT Y +V + +R ME+ D Sbjct: 118 HTMRRSRAEHLLDKGLPLTFVSKYLRYKNLSTTMKYLDVSVADIQREMEMIDDC 171 >gi|255014184|ref|ZP_05286310.1| integrase [Bacteroides sp. 2_1_7] Length = 440 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 HT R SFAT++ G L SI +I GHS + Y ++ Sbjct: 380 HTARRSFATNMYKTGASLNSIMAITGHSSEQQLKTYLKLD 419 >gi|120402128|ref|YP_951957.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954946|gb|ABM11951.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 637 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 22/29 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H LRH++AT L++ G L+S+ ++LGH Sbjct: 467 TPHQLRHTYATALVNAGVSLQSLMALLGH 495 >gi|332880867|ref|ZP_08448538.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681250|gb|EGJ54176.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 418 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RH++A+ + G DL + + LGH L TTQIY Sbjct: 359 TTYVARHTWASTMRDMGYDLSIVSTGLGHENLKTTQIY 396 >gi|322378855|ref|ZP_08053276.1| integrase/recombinase (XerD) [Helicobacter suis HS1] gi|322380172|ref|ZP_08054408.1| integrase/recombinase XerD [Helicobacter suis HS5] gi|321147402|gb|EFX42066.1| integrase/recombinase XerD [Helicobacter suis HS5] gi|321148718|gb|EFX43197.1| integrase/recombinase (XerD) [Helicobacter suis HS1] Length = 364 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYD 54 T H RHSFAT + DL LGH+ L +T+IY T ++K++ ++D Sbjct: 304 TGLHLFRHSFATLIYQETQDLVLTSRALGHNSLLSTKIYIHTTQEHNKKVACVFD 358 >gi|308176208|ref|YP_003915614.1| phage integrase family protein [Arthrobacter arilaitensis Re117] gi|307743671|emb|CBT74643.1| phage integrase family protein [Arthrobacter arilaitensis Re117] Length = 597 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 22/29 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGH 32 T H LRH++AT L++ G L+S+ ++LGH Sbjct: 426 TPHQLRHTYATALINAGVTLQSLMALLGH 454 >gi|307710443|ref|ZP_07646881.1| integrase [Streptococcus mitis SK564] gi|307618796|gb|EFN97934.1| integrase [Streptococcus mitis SK564] Length = 405 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 21/41 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT G L +I L HS TTQIY N Sbjct: 346 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVN 386 >gi|299148657|ref|ZP_07041719.1| putative integrase [Bacteroides sp. 3_1_23] gi|298513418|gb|EFI37305.1| putative integrase [Bacteroides sp. 3_1_23] Length = 456 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +HT R SFAT+ G L SIQ+I GHS + + Y ++++ Sbjct: 398 SHTARRSFATNAYKAGVPLPSIQAITGHSSEAQLRRYLKLDAE 440 >gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 369 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+F T+ G + + + +GH L YT++N K++ Sbjct: 300 HDLRHTFCTYASETGASILELAAAMGHQTLQMVNRYTHMNQKKI 343 >gi|265750916|ref|ZP_06086979.1| transposase [Bacteroides sp. 3_1_33FAA] gi|263237812|gb|EEZ23262.1| transposase [Bacteroides sp. 3_1_33FAA] Length = 410 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TT IY + +++ Sbjct: 342 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKI 388 >gi|260495435|ref|ZP_05815561.1| site-specific recombinase [Fusobacterium sp. 3_1_33] gi|260196972|gb|EEW94493.1| site-specific recombinase [Fusobacterium sp. 3_1_33] Length = 396 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H LRHS AT L L+ IQ LGHS + TT IY++ + R Sbjct: 337 HDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTR 380 >gi|229065158|ref|ZP_04200449.1| Transposition regulatory protein TnpB [Bacillus cereus AH603] gi|228716124|gb|EEL67846.1| Transposition regulatory protein TnpB [Bacillus cereus AH603] Length = 703 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV--NSKR 48 AH RH++ +L+ G D+ ++Q +L H+ T Y + N+KR Sbjct: 502 AHQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKR 547 >gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902] gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902] Length = 291 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 22/40 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRHS ATH + G ++ +Q LGHS TT Y N Sbjct: 242 HKLRHSHATHAIRRGTNVFCLQHTLGHSSTDTTSGYVKQN 281 >gi|210134634|ref|YP_002301073.1| integrase/recombinase XercD family [Helicobacter pylori P12] gi|210132602|gb|ACJ07593.1| integrase/recombinase XercD family [Helicobacter pylori P12] Length = 357 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332 >gi|254184559|ref|ZP_04891148.1| phage integrase [Burkholderia pseudomallei 1655] gi|184215151|gb|EDU12132.1| phage integrase [Burkholderia pseudomallei 1655] Length = 60 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 25/41 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 M + H +RH+ A H L+ G + +++ L H+ ++TT IY Sbjct: 1 MRASPHWMRHTHAAHALARGAEPTTVRDNLRHASIATTSIY 41 >gi|40218637|gb|AAR83256.1| PZ15b [Helicobacter pylori] Length = 357 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 297 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 332 >gi|261207832|ref|ZP_05922517.1| integrase [Enterococcus faecium TC 6] gi|289566384|ref|ZP_06446812.1| transposase [Enterococcus faecium D344SRF] gi|83940967|gb|ABC48872.1| integrase [Enterococcus faecium] gi|260078215|gb|EEW65921.1| integrase [Enterococcus faecium TC 6] gi|289161822|gb|EFD09694.1| transposase [Enterococcus faecium D344SRF] Length = 399 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 24/38 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H+LRH+F T + + G ++Q I+GHS +S T Y Sbjct: 343 SPHSLRHTFCTKMANKGMTPNTLQYIMGHSDISMTLNY 380 >gi|116662216|ref|YP_829271.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116612968|gb|ABK05690.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 803 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H R FAT L++G +Q ++GH+ L+TTQ Y + Sbjct: 609 TPHDFRRIFATEALASGLPPHIVQVLMGHASLATTQGYAAI 649 >gi|317011740|gb|ADU85487.1| integrase/recombinase XercD family protein [Helicobacter pylori SouthAfrica7] Length = 330 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 270 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 305 >gi|296877295|ref|ZP_06901335.1| phage integrase family integrase/recombinase [Streptococcus parasanguinis ATCC 15912] gi|296431815|gb|EFH17622.1| phage integrase family integrase/recombinase [Streptococcus parasanguinis ATCC 15912] Length = 405 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT G L +I L HS TTQIY N ++ M + + S+ Q Sbjct: 347 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMAVGEFALQSLKQ 405 >gi|294084585|ref|YP_003551343.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664158|gb|ADE39259.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 188 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 30/47 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R +F T L ++G ++R + ++ GH +S TQ Y +VN ++ Sbjct: 135 ASSHSGRRTFITKLANSGVNVRLLATLAGHQHISVTQRYIDVNDTQL 181 >gi|111017694|ref|YP_700666.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|111023863|ref|YP_706835.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110817224|gb|ABG92508.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|110823393|gb|ABG98677.1| possible integrase/recombinase [Rhodococcus jostii RHA1] Length = 353 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LR + ATH G DL +IQ +LGH + +T Y + + + Y Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRPSETFIEDAY 335 >gi|109897057|ref|YP_660312.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109699338|gb|ABG39258.1| phage integrase [Pseudoalteromonas atlantica T6c] Length = 305 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + + H LR ++ T LL DL +++ + GH +STT +Y ++K M Sbjct: 241 NVSPHDLRRTYITRLLEQNIDLNTVRLMAGHQDISTTVVYDKRDNKVM 288 >gi|46201750|ref|ZP_00131495.2| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 189 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R F T L +G + I ++ GH LSTTQ Y VN + M Sbjct: 135 GASSHSGRRWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVNDQMM 182 >gi|315575035|gb|EFU87226.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315582461|gb|EFU94652.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 191 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 131 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 172 >gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 369 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 4/50 (8%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV---NSKRMME 51 H RH++AT LL + + ++LGHS ++TT IY ++ +++R +E Sbjct: 308 HWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDARRALE 357 >gi|237741434|ref|ZP_04571915.1| site-specific recombinase [Fusobacterium sp. 4_1_13] gi|237745172|ref|ZP_04575653.1| site-specific recombinase [Fusobacterium sp. 7_1] gi|294785953|ref|ZP_06751241.1| site-specific recombinase, phage integrase family [Fusobacterium sp. 3_1_27] gi|229429082|gb|EEO39294.1| site-specific recombinase [Fusobacterium sp. 4_1_13] gi|229432401|gb|EEO42613.1| site-specific recombinase [Fusobacterium sp. 7_1] gi|294487667|gb|EFG35029.1| site-specific recombinase, phage integrase family [Fusobacterium sp. 3_1_27] Length = 396 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H LRHS AT L L+ IQ LGHS + TT IY++ + R Sbjct: 337 HDLRHSCATLLYEQDIQLKDIQMWLGHSDIQTTANIYSHFDYTR 380 >gi|228997868|ref|ZP_04157471.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17] gi|229005405|ref|ZP_04163118.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4] gi|228755767|gb|EEM05099.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4] gi|228761866|gb|EEM10809.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17] Length = 182 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 22/39 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH++A LL+ G D+ ++Q +L H+ T Y + Sbjct: 96 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKL 134 >gi|217038356|gb|ACJ76643.1| class 1 integrase intI1 [Klebsiella pneumoniae] Length = 295 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 15/21 (71%), Positives = 17/21 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLR 24 T HTLRHSFAT LL +G D+R Sbjct: 275 TPHTLRHSFATALLRSGYDIR 295 >gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas aeruginosa PA7] gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas aeruginosa PA7] Length = 404 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA+ L+ G L +++ +LGHS ++ T Y ++ Sbjct: 354 HDLRHTFASKLVMAGVPLNTVRELLGHSDITMTLRYAHL 392 >gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 376 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + H LRH+FAT + G +++Q +LGHS + T Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 350 >gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1] gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1] Length = 291 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 24/41 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T H LRH+F T +G +L+ + ++GHS ++ T Y Sbjct: 228 VKVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKY 268 >gi|296164168|ref|ZP_06846774.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900480|gb|EFG79880.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 350 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +R + ATH G DL +IQ +LGH +++T Y + + + Y + Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQR 337 >gi|291485264|dbj|BAI86339.1| hypothetical protein BSNT_04132 [Bacillus subtilis subsp. natto BEST195] Length = 339 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 19/36 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR FA LL G ++ I LGHS +S T Y Sbjct: 286 HALRRGFAKSLLDKGANVAVISKALGHSDISVTTKY 321 >gi|168206201|ref|ZP_02632206.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] gi|170662365|gb|EDT15048.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] Length = 368 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H LRH+ AT L+ NG +++ + LGH+ ++TT YT++ M E+ D T Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHI----MEEMKDNT 356 >gi|139438848|ref|ZP_01772308.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC 25986] gi|133775559|gb|EBA39379.1| Hypothetical protein COLAER_01312 [Collinsella aerofaciens ATCC 25986] Length = 264 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA + ++ D+ + ++GH + TT+IY Sbjct: 211 HSFRHLFAKNFINRNPDISLLADLMGHESIETTRIY 246 >gi|111017486|ref|YP_700458.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|110817016|gb|ABG92300.1| probable tyrosine recombinase [Rhodococcus jostii RHA1] Length = 350 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H +R + ATH G DL +IQ +LGH +++T Y + + + Y + Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQR 337 >gi|83955209|ref|ZP_00963864.1| phage integrase family protein [Sulfitobacter sp. NAS-14.1] gi|83840202|gb|EAP79376.1| phage integrase family protein [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H++R + T + G+LR++Q +LGH+++ +T Y V + + I + Sbjct: 131 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAE 179 >gi|312873817|ref|ZP_07733861.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2052A-d] gi|311090698|gb|EFQ49098.1| site-specific recombinase, phage integrase family [Lactobacillus iners LEAF 2052A-d] Length = 372 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H RH+FAT L+S +++Q +LGH + T +YT++N +E Sbjct: 313 TVHGFRHTFATLLISETNVKPKTVQMLLGHKNIEITLNLYTHINQDNQIE 362 >gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7] gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7] Length = 361 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 21/32 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 S T H+LRH A+ + G D++++ ILGHS Sbjct: 302 SFTYHSLRHKMASEAIEIGFDVKTLSEILGHS 333 >gi|227496965|ref|ZP_03927216.1| integrase family protein [Actinomyces urogenitalis DSM 15434] gi|226833527|gb|EEH65910.1| integrase family protein [Actinomyces urogenitalis DSM 15434] Length = 412 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH+ AT LL G D R+IQ ILG ++ T Y Sbjct: 353 HSARHTCATLLLEAGADQRTIQEILGQTQALTLARY 388 >gi|198274712|ref|ZP_03207244.1| hypothetical protein BACPLE_00871 [Bacteroides plebeius DSM 17135] gi|198272159|gb|EDY96428.1| hypothetical protein BACPLE_00871 [Bacteroides plebeius DSM 17135] Length = 456 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 26/43 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +HT R SFAT+ G L SIQ+I GHS + + Y ++++ Sbjct: 398 SHTARRSFATNAYKAGVPLSSIQAITGHSSEAQLRRYLKLDAE 440 >gi|54022678|ref|YP_116920.1| putative phage integrase [Nocardia farcinica IFM 10152] gi|54014186|dbj|BAD55556.1| putative phage integrase [Nocardia farcinica IFM 10152] Length = 403 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 24/35 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H +RH+ A+ +S+G + ++Q +LGH + STT Sbjct: 321 TPHEMRHTAASLAVSHGASVLALQRMLGHDKPSTT 355 >gi|328913318|gb|AEB64914.1| Tyrosine recombinase xerC [Bacillus amyloliquefaciens LL3] Length = 385 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSK 47 + H LRHS A HL+ DL+ + LGHS + T Y +V K Sbjct: 326 SPHALRHSHAVHLIEAKADLKFVSERLGHSSIKITADTYLHVTKK 370 >gi|325963597|ref|YP_004241503.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323469684|gb|ADX73369.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 268 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 24/30 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 T+H LRH++AT L++ G L+++ ++LGH+ Sbjct: 92 TSHQLRHTYATALVNAGVSLQALMALLGHA 121 >gi|295839066|ref|ZP_06825999.1| integrase [Streptomyces sp. SPB74] gi|295827305|gb|EDY44619.2| integrase [Streptomyces sp. SPB74] Length = 378 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 + T H RH +A+ L+S G + +Q LGH++ S T +YT++ Sbjct: 318 AATLHDARHFYASVLISKGATPKQVQRRLGHAKPSVTLNVYTHL 361 >gi|227872383|ref|ZP_03990731.1| possible tyrosine recombinase [Oribacterium sinus F0268] gi|227841772|gb|EEJ52054.1| possible tyrosine recombinase [Oribacterium sinus F0268] Length = 358 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LR S+ T+L GD+ + +LGHS ++TT+ Sbjct: 297 TPHKLRSSYGTNLYQETGDIYLVADVLGHSDVNTTK 332 >gi|167815702|ref|ZP_02447382.1| phage integrase family protein [Burkholderia pseudomallei 91] Length = 132 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ ATH L+ G +L ++ H+ +STT Y + + R +DQ Sbjct: 73 ASPHWIRHAHATHALARGAELIMVRDNRRHASISTTSAYLHSDEVRRTLQFDQA 126 >gi|114566824|ref|YP_753978.1| phage integrase family site specific recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337759|gb|ABI68607.1| site-specific recombinase, phage integrase family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 98 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT LLS G ++ + LGH S T +IY +V R + D+ + + Sbjct: 32 TFHHLRHTHATILLSAGANINEVSERLGHKDASITLKIYGHVLPGRDQSLADKFDTLVFE 91 Query: 63 KDKK 66 ++K Sbjct: 92 PEQK 95 >gi|111024894|ref|YP_707314.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110823873|gb|ABG99156.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 399 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LR + ATH G DL +IQ +LGH + +T Y + + + Y Sbjct: 332 SPHALRRACATHNYERGVDLVAIQQMLGHWTVGSTMRYVRPSETFIEDAY 381 >gi|154175228|ref|YP_001408727.1| site-specific recombinase, phage integrase family protein [Campylobacter curvus 525.92] gi|112802137|gb|EAT99481.1| site-specific recombinase, phage integrase family protein [Campylobacter curvus 525.92] Length = 385 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FA+HL G + +I+ ++ HS ++ T Y + Sbjct: 333 HTLRHTFASHLAIKGTPILTIKKLMNHSDINHTLRYAKL 371 >gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 349 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H+LRHSF + L+ +G + I LGHS +TTQ IY+++ + E Y++ Sbjct: 289 TIHSLRHSFCSILIHHGFSILYISKHLGHSNPATTQSIYSHL----LQETYER 337 >gi|289664416|ref|ZP_06485997.1| putative integrase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 314 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 14/19 (73%), Positives = 15/19 (78%) Query: 4 TAHTLRHSFATHLLSNGGD 22 T HTLRH+FATHLL G D Sbjct: 277 TCHTLRHAFATHLLEAGHD 295 >gi|266625452|ref|ZP_06118387.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288862643|gb|EFC94941.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 282 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH FA S +L + ILGHS + TT+IY +++ Sbjct: 222 HNFRHLFAKTFYSIEKNLAHLADILGHSSIETTRIYVAASTR 263 >gi|255038916|ref|YP_003089537.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254951672|gb|ACT96372.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 411 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T + RHS+AT L NG +I LGH L TT IY Sbjct: 357 TTYVARHSYATTLRRNGVSKENIGRSLGHDSLKTTDIY 394 >gi|257784371|ref|YP_003179588.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257472878|gb|ACV50997.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 391 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T H+LRH+ A+ L++G DL+++ LGH+ +TT +IY+++ R Sbjct: 326 TFHSLRHTHASWCLASGVDLKTLSERLGHADPATTLRIYSHLLPGR 371 >gi|163816187|ref|ZP_02207555.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759] gi|158448607|gb|EDP25602.1| hypothetical protein COPEUT_02371 [Coprococcus eutactus ATCC 27759] Length = 426 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 7/70 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEDFRKA 406 Query: 57 HPSITQKDKK 66 I ++++K Sbjct: 407 QTEIEKENEK 416 >gi|121583050|ref|YP_973491.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120596312|gb|ABM39749.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 609 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMME 51 T H LRH+F T ++ L IQ+ +GH+ + +TT IY KR ++ Sbjct: 554 TTHWLRHTFGTRAIAREVPLDVIQAQMGHASIQTTTAIYGRAPIKRRVD 602 >gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp. NAS-14.1] gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp. NAS-14.1] Length = 353 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FAT +L ++ + +LGH+ + TT Y +V Sbjct: 286 HDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHV 324 >gi|148252808|ref|YP_001237393.1| putative phage related integrase [Bradyrhizobium sp. BTAi1] gi|146404981|gb|ABQ33487.1| putative phage related integrase [Bradyrhizobium sp. BTAi1] Length = 434 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+ A+ G L I +LGH++ STTQ Y +++S + + ++ SI+ Sbjct: 352 HDLRHTHASVGAGAGLGLPIIGKLLGHTQASTTQRYAHLDSDPLQKASNKIAASIS 407 >gi|331699799|ref|YP_004336038.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326954488|gb|AEA28185.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 827 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 22/41 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H R F T L+ +G L S+LGH L TT+ YT V Sbjct: 665 TPHDFRRLFTTELVGSGLPLHIAASLLGHLSLDTTRGYTAV 705 >gi|307708158|ref|ZP_07644625.1| integrase/recombinase, phage integrase family [Streptococcus mitis NCTC 12261] gi|307615604|gb|EFN94810.1| integrase/recombinase, phage integrase family [Streptococcus mitis NCTC 12261] Length = 271 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 21/41 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRH+ AT G L +I L HS TTQIY N Sbjct: 212 ATPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVN 252 >gi|239907685|ref|YP_002954426.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797551|dbj|BAH76540.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 348 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + +RH AT LL GGDL ++ ++GHS + T Sbjct: 292 YDIRHLLATTLLQEGGDLSAVSKLMGHSSVHMT 324 >gi|218128949|ref|ZP_03457753.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697] gi|217988912|gb|EEC55229.1| hypothetical protein BACEGG_00521 [Bacteroides eggerthii DSM 20697] Length = 411 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+F T + L+N L+ + +LGH+ TQ Y V + + E + + Q Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNSVKERLAQ 411 >gi|307289825|ref|ZP_07569760.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306499116|gb|EFM68596.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|315144225|gb|EFT88241.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] Length = 314 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LRH+ A+ LL++G SI LGHS ++TTQ Sbjct: 253 TMHGLRHTHASILLADGVSTHSIAKRLGHSSVTTTQ 288 >gi|320010246|gb|ADW05096.1| integrase family protein [Streptomyces flavogriseus ATCC 33331] Length = 382 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH AT L + G R I ILGHS++S T +YT+V ++D +I+ D Sbjct: 320 HDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHV-------VHDTQREAISHMD 372 Query: 65 K 65 + Sbjct: 373 R 373 >gi|227519548|ref|ZP_03949597.1| possible bacteriophage integrase [Enterococcus faecalis TX0104] gi|257090848|ref|ZP_05585209.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312902483|ref|ZP_07761689.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|227072997|gb|EEI10960.1| possible bacteriophage integrase [Enterococcus faecalis TX0104] gi|256999660|gb|EEU86180.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310634153|gb|EFQ17436.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|315579708|gb|EFU91899.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] Length = 314 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LRH+ A+ LL++G SI LGHS ++TTQ Sbjct: 253 TMHGLRHTHASILLADGVSTHSIAKRLGHSSVTTTQ 288 >gi|283797059|ref|ZP_06346212.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075474|gb|EFE12838.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 658 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+ A+ L NG +++I+ LGH+ T+ Y + KR+ Sbjct: 585 HDYRHTMASGLYDNGVSIQTIRDYLGHNNEDMTKQYIDYMPKRI 628 >gi|169343416|ref|ZP_02864420.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] gi|169298502|gb|EDS80588.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] Length = 368 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H LRH+ AT L+ NG +++ + LGH+ ++TT YT++ M E+ D T Sbjct: 307 SIHGLRHTHATLLILNGENIKIVSDRLGHNDITTTLNTYTHI----MEEMKDNT 356 >gi|153008037|ref|YP_001369252.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151559925|gb|ABS13423.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 720 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGH-SRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH F+ L G ++ ++ I GH R YTN+ S +M+ +P IT Sbjct: 636 HALRHGFSNTLKQKGIEMSIMEDITGHLGRTEGETRYTNIASLTVMKKTIDVYPVIT 692 >gi|111025268|ref|YP_707688.1| integrase/recombinase [Rhodococcus jostii RHA1] gi|110824247|gb|ABG99530.1| probable integrase/recombinase [Rhodococcus jostii RHA1] Length = 439 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHS A HL G L + LGH+ TT IY + +++ Sbjct: 264 HMLRHSRAMHLYQAGMPLALLTEWLGHADPETTLIYAHADTE 305 >gi|330989733|gb|EGH87836.1| Orf28 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 132 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 80 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 115 >gi|322516068|ref|ZP_08069005.1| phage integrase family prophage Sa05 [Streptococcus vestibularis ATCC 49124] gi|322125483|gb|EFX96829.1| phage integrase family prophage Sa05 [Streptococcus vestibularis ATCC 49124] Length = 388 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60 H RH+ A+ LL++G + +Q LGHS+LS T Y+++ N+K+ ++Q SI Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSKLSMTMDTYSHLSKENAKKATSFFEQALKSI 388 >gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 288 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + HTLRH+ A+H L G + + LGHS ++ T Y Sbjct: 236 VSPHTLRHAHASHALERGAKIHLVSETLGHSSIAITSRY 274 >gi|270291392|ref|ZP_06197614.1| phage integrase [Pediococcus acidilactici 7_4] gi|270280238|gb|EFA26074.1| phage integrase [Pediococcus acidilactici 7_4] Length = 371 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+ +LLS DL I LGHS +STT Sbjct: 302 HSLRHTHVAYLLSENVDLFIISKRLGHSDISTT 334 >gi|256848881|ref|ZP_05554315.1| integrase [Lactobacillus crispatus MV-1A-US] gi|256714420|gb|EEU29407.1| integrase [Lactobacillus crispatus MV-1A-US] Length = 370 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 20/33 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+ LL G DL SI LGHS +S T Sbjct: 312 HSLRHTHVAMLLFKGVDLYSISKRLGHSNMSIT 344 >gi|90961742|ref|YP_535658.1| Phage integrase [Lactobacillus phage Sal1] gi|90820936|gb|ABD99575.1| Phage integrase [Lactobacillus phage Sal1] gi|300214518|gb|ADJ78934.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 315 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 22/36 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LRH AT+L+S G D R++ LGH S T+ Sbjct: 255 TLHGLRHEHATYLVSQGIDSRAVAERLGHVDDSVTR 290 >gi|320084984|emb|CBY94773.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 168 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 25/53 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++ H LRH+ L G D R IQ LGH + T YT N+ R I+ Sbjct: 110 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 162 >gi|315574014|gb|EFU86205.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315581965|gb|EFU94156.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 191 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 131 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 172 >gi|158320580|ref|YP_001513087.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140779|gb|ABW19091.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 405 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LR + AT L+ G + +Q++L H ++TTQ+Y Sbjct: 348 SPHKLRATAATSLIQQGFSIYDVQNLLDHDNVTTTQLYA 386 >gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] Length = 376 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + H LRH+FAT + G +++Q +LGHS + T Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 350 >gi|71278258|ref|YP_269343.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71143998|gb|AAZ24471.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 418 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 +AH LRH+ A+ + G L+ I LGH+ ++TT +Y +K+ E Sbjct: 362 SAHWLRHTGASMEIERGRPLKDISEDLGHASMATTDTVYVQSENKKRAE 410 >gi|56414164|ref|YP_151239.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363087|ref|YP_002142724.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128421|gb|AAV77927.1| probable DNA recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094564|emb|CAR60085.1| probable DNA recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 188 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 25/53 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++ H LRH+ L G D R IQ LGH + T YT N+ R I+ Sbjct: 130 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 182 >gi|50119564|ref|YP_048731.1| putative phage integrase [Pectobacterium atrosepticum SCRI1043] gi|49610090|emb|CAG73530.1| putative phage integrase [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 3 TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +AH RH+ AT L+ + +L ++ +LGH +STT Y +N MEI +T Sbjct: 267 VSAHRFRHTLATELMKAPERNLLLVKDLLGHRNVSTTMEYVELN----MEIVGRT 317 >gi|331004726|ref|ZP_08328179.1| hypothetical protein HMPREF0491_03041 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408983|gb|EGG88443.1| hypothetical protein HMPREF0491_03041 [Lachnospiraceae oral taxon 107 str. F0167] Length = 404 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LR + T+++ G + ++ +LGHSR+ T+ Y +++S + E Sbjct: 340 CTFHGLRRAVGTNMVIAGIPVTTVSQVLGHSRIDPTKQYISLDSVHLKE 388 >gi|319651079|ref|ZP_08005213.1| hypothetical protein HMPREF1013_01824 [Bacillus sp. 2_A_57_CT2] gi|317397249|gb|EFV77953.1| hypothetical protein HMPREF1013_01824 [Bacillus sp. 2_A_57_CT2] Length = 532 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T H RH F T+ L G ++ + ILGH + T+ Y Sbjct: 334 LKLTQHYFRHIFTTYALKGGMNIHDVAEILGHKSIYMTETY 374 >gi|312602394|ref|YP_004022239.1| hypothetical protein RBRH_01886 [Burkholderia rhizoxinica HKI 454] gi|312169708|emb|CBW76720.1| Hypothetical protein RBRH_01886 [Burkholderia rhizoxinica HKI 454] Length = 55 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +RH+ A+H L+ G +L + L HS + TT IY + + + + +DQ Sbjct: 1 MRHTHASHALARGAELIMVHDNLRHSSIPTTSIYLHSDEVQRVRRFDQA 49 >gi|160942744|ref|ZP_02089985.1| hypothetical protein FAEPRAM212_00220 [Faecalibacterium prausnitzii M21/2] gi|158445909|gb|EDP22912.1| hypothetical protein FAEPRAM212_00220 [Faecalibacterium prausnitzii M21/2] Length = 410 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Query: 6 HTLRHSFATH-LLSNGGDLRSIQSILGHS 33 H LRHS AT+ LL +GGD +S+Q GH+ Sbjct: 304 HGLRHSSATYQLLQSGGDFKSVQGNTGHA 332 >gi|329568808|gb|EGG50608.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1467] Length = 229 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V Sbjct: 169 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDV 210 >gi|309776162|ref|ZP_07671153.1| integrase [Erysipelotrichaceae bacterium 3_1_53] gi|308916113|gb|EFP61862.1| integrase [Erysipelotrichaceae bacterium 3_1_53] Length = 286 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 23/42 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH FA D+ + +LGH+ + TT+IYT + K Sbjct: 228 HNLRHLFALTFYRLQKDVVRLADLLGHASIETTRIYTMITGK 269 >gi|307637687|gb|ADN80137.1| hypothetical protein hp908_1014 [Helicobacter pylori 908] gi|325996287|gb|ADZ51692.1| integrase/recombinase [Helicobacter pylori 2018] gi|325997876|gb|ADZ50084.1| XERCD family protein/integrase/ recombinase [Helicobacter pylori 2017] Length = 178 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H RHSFAT + DL LGHS L +T+IY Sbjct: 112 HLFRHSFATFIYDETQDLVLTSRALGHSSLLSTKIY 147 >gi|255262462|ref|ZP_05341804.1| phage integrase [Thalassiobium sp. R2A62] gi|255104797|gb|EET47471.1| phage integrase [Thalassiobium sp. R2A62] Length = 177 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H++R + T + G+LR++Q +LGH+++ +T Y V + + I + Sbjct: 125 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAE 173 >gi|302879690|ref|YP_003848254.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302582479|gb|ADL56490.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 208 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H++R + AT + +LR++Q +LGH++L +T Y + + I +QT Sbjct: 156 HSMRRTKATLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALVISEQTE 207 >gi|163783399|ref|ZP_02178391.1| integrase protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881321|gb|EDP74833.1| integrase protein [Hydrogenivirga sp. 128-5-R1-1] Length = 313 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 + AH R+++ T L + G + I +GHS++STT IY ++M+E Sbjct: 256 IEVNAHRFRNTYITKLATLGFPVNLIAEWVGHSKISTTMDIYMEAEKEKMLE 307 >gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756] gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756] Length = 376 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + H LRH+FAT + G +++Q +LGHS + T Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGIT 350 >gi|313206734|ref|YP_004045911.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446050|gb|ADQ82405.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|315023805|gb|EFT36807.1| phage integrase family protein [Riemerella anatipestifer RA-YM] gi|325335826|gb|ADZ12100.1| integrase [Riemerella anatipestifer RA-GD] Length = 402 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFA-THLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT R +FA T LL+N + I +LGHS+++TTQ Y Sbjct: 343 THHTGRKTFASTVLLNNDIPIEVISKLLGHSKITTTQEY 381 >gi|312890147|ref|ZP_07749689.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311297386|gb|EFQ74513.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 447 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+ RH++A L NG +Q LGHS+LS T Y + Sbjct: 392 SCHSARHTYAILSLENGMRPEVLQRNLGHSKLSQTMDYVKI 432 >gi|29346451|ref|NP_809954.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29338347|gb|AAO76148.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 413 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 21/38 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T +T RHSFAT L G I LGHS L+ T+ Y Sbjct: 353 TTYTARHSFATVLKRGGAKTSYISESLGHSNLTVTENY 390 >gi|46202569|ref|ZP_00208567.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 159 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R F T L +G + I ++ GH LSTTQ Y VN + M Sbjct: 105 GASSHSGRRWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVNDQMM 152 >gi|317055894|ref|YP_004104361.1| integrase family protein [Ruminococcus albus 7] gi|315448163|gb|ADU21727.1| integrase family protein [Ruminococcus albus 7] Length = 362 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 23/33 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+FAT+ G +++++ ++LGHS + T Sbjct: 308 HKLRHTFATNSAEKGFNVKALSAVLGHSSVPLT 340 >gi|301163006|emb|CBW22554.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 125 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H+ RHS+AT + L+NG + ++ +LGH+ S T+ Y V + +++ + + +++ Sbjct: 65 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARVLDQNILKDMQKVNSCLSE 122 >gi|27379637|ref|NP_771166.1| site-specific integrase [Bradyrhizobium japonicum USDA 110] gi|27352789|dbj|BAC49791.1| intA [Bradyrhizobium japonicum USDA 110] Length = 388 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 11/57 (19%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS A+H+L++ + +Q LGHS ++ T M+IY P++ Sbjct: 319 TLHGLRHSHASHMLASNIHPKIVQERLGHSSIAIT-----------MDIYSHLMPNM 364 >gi|298253182|ref|ZP_06976974.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532577|gb|EFH71463.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 298 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRH + T + DL + +LGH+ + TTQIY ++ Sbjct: 246 HSLRHRYDTKAYESTHDLLLVSKLLGHASVETTQIYISL 284 >gi|295687895|ref|YP_003591588.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295429798|gb|ADG08970.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 386 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M H RH T +L+ G+L+ Q +LGH+ + +T Y + + + + P Sbjct: 308 MPRLIHGTRHHAGTMMLAKSGNLKLAQQLLGHADIKSTMRYAHAMDGALRNVLENLDP 365 >gi|253563307|ref|ZP_04840764.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251947083|gb|EES87365.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 394 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 23/38 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H+ RH+FAT L+ + D+ I LGH ++ TQ Y Sbjct: 335 TYHSSRHTFATLLVIDNVDIYKISKYLGHKSVNMTQRY 372 >gi|227544984|ref|ZP_03975033.1| integrase [Lactobacillus reuteri CF48-3A] gi|300909983|ref|ZP_07127443.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112] gi|227185045|gb|EEI65116.1| integrase [Lactobacillus reuteri CF48-3A] gi|300892631|gb|EFK85991.1| tyrosine recombinase XerC [Lactobacillus reuteri SD2112] Length = 362 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH +LLS G D+ +I LGHS ++ T Sbjct: 304 HSLRHVHVAYLLSKGVDIYAISKRLGHSNITIT 336 >gi|218529622|ref|YP_002420438.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521925|gb|ACK82510.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 330 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 23/46 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ A+ DLR Q++L HS T Y +VN M E Sbjct: 261 HDLRHTAASRFQRANKDLRLTQTLLNHSSPKMTVRYAHVNEDDMRE 306 >gi|212692905|ref|ZP_03301033.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855] gi|212664527|gb|EEB25099.1| hypothetical protein BACDOR_02405 [Bacteroides dorei DSM 17855] Length = 446 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 21/36 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H RH+FA L+NG D+ + +L HS + T+ Sbjct: 379 TMHVARHTFAVFALNNGVDVHKVSCLLAHSSVMVTE 414 >gi|160893952|ref|ZP_02074731.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50] gi|156864330|gb|EDO57761.1| hypothetical protein CLOL250_01507 [Clostridium sp. L2-50] Length = 427 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV------NSKRMMEIYDQT 56 T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + + Sbjct: 347 TPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFRKA 406 Query: 57 HPSITQKD 64 I +K+ Sbjct: 407 QAEIEKKN 414 >gi|23013027|ref|ZP_00052983.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 193 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H+ R F T L +G + I ++ GH LSTTQ Y VN + M Sbjct: 135 ASSHSGRRWFITQLAHSGVSAKVIMTLAGHRHLSTTQRYIEVNDQMM 181 >gi|323128246|gb|ADX25543.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 421 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H RH+ A+ LL+ G + + +Q +GH +STT Y + +R +E D Sbjct: 361 HLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVD 410 >gi|291449689|ref|ZP_06589079.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291352636|gb|EFE79540.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 105 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%) Query: 9 RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK---RMME 51 RH++ THL+ G R +Q +GH+ STT +Y V+ + R++E Sbjct: 42 RHTYITHLIEFGYPERFVQEQVGHAYASTTALYAWVSDEYRNRLLE 87 >gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia hofstadii F0254] gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia hofstadii F0254] Length = 342 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 M T H RH+FAT + + +I I+GH+ ++ T+ YT+ N ++M Sbjct: 286 MEHTIHDTRHTFATMISDVSDNETAITGIIGHTNINMTKRYTHTNIEKM 334 >gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876] gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876] Length = 345 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH RH++A +++ NG D ++Q + G + + T + Y ++++ + +D P Sbjct: 278 TAHVYRHTWAKNMILNGCDPFTLQKMGGWADMRTMRRYIQMDTEEIRRSHDDFSP 332 >gi|163858822|ref|YP_001633120.1| hypothetical protein Bpet4502 [Bordetella petrii DSM 12804] gi|163262550|emb|CAP44853.1| unnamed protein product [Bordetella petrii] Length = 204 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 HT+R + A+ + +LR++Q +LGH++L +T Y + +EI + Sbjct: 156 HTMRRTKASLIYRRTKNLRAVQLLLGHTKLESTVRYLGIEVDDALEIAE 204 >gi|163734963|ref|ZP_02142400.1| phage integrase [Roseobacter litoralis Och 149] gi|161391745|gb|EDQ16077.1| phage integrase [Roseobacter litoralis Och 149] Length = 137 Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H++R + T + G+LR++Q +LGH+++ +T Y V + + I + Sbjct: 85 HSMRRTKVTQIYKKTGNLRAVQLLLGHTKMDSTVRYLGVELEDALAIAE 133 >gi|163739991|ref|ZP_02147396.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161386736|gb|EDQ11100.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 249 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H++R + A + G+LR++Q +LGH+++ +T Y V + + I Sbjct: 197 HSMRRTKAAEIYRKTGNLRAVQLLLGHTKVDSTVRYLGVELEDALSI 243 >gi|7620530|gb|AAF64651.1|AF200320_1 IntA [Bradyrhizobium japonicum] Length = 388 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 11/57 (19%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS A+H+L++ + +Q LGHS ++ T M+IY P++ Sbjct: 319 TLHGLRHSHASHMLASNIHPKIVQERLGHSSIAIT-----------MDIYSHLMPNM 364 >gi|330880014|gb|EGH14163.1| Orf28 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 183 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 131 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 166 >gi|315575528|gb|EFU87719.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315580031|gb|EFU92222.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 408 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+ + +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403 >gi|306824504|ref|ZP_07457850.1| phage integrase family integrase/recombinase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433291|gb|EFM36261.1| phage integrase family integrase/recombinase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 434 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT G L +I L HS TTQIY N ++ M + + S+ Q Sbjct: 376 TPHKLRHTGATLAKQAGMSLEAISEALTHSDTGTTQIYVNTSNVVPMTVGEFALKSLNQ 434 >gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7] gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7] Length = 403 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIY----TNVNSKRMMEIYD 54 H+LRH A+ L+ +G ++R++ + LGHS+ STT IY N++ M + D Sbjct: 329 HSLRHLNASLLIHSGVNIRTVSACLGHSQTSTTLNIYAHSMAKANAEAMESVAD 382 >gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] Length = 301 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHP 58 + + HTLRH L NG DL S I GH + T+ Y + ++ ++E+ +T P Sbjct: 238 IRCSPHTLRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRYLQGLETENILEMAQKTSP 296 >gi|293372928|ref|ZP_06619297.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292631996|gb|EFF50605.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 368 Score = 33.9 bits (76), Expect = 8.7, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 314 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 350 >gi|227518002|ref|ZP_03948051.1| conserved hypothetical protein [Enterococcus faecalis TX0104] gi|227074524|gb|EEI12487.1| conserved hypothetical protein [Enterococcus faecalis TX0104] Length = 81 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T H LRH+ AT L+ G +++ + + LGH ++ T +Y++V + E D Sbjct: 21 TVHGLRHTHATFLIEAGANIKYVSTRLGHKNINITLDVYSDVLKEEEKETAD 72 >gi|189466894|ref|ZP_03015679.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM 17393] gi|189435158|gb|EDV04143.1| hypothetical protein BACINT_03276 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 33.9 bits (76), Expect = 8.7, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H RH+FAT + L+N L ++ ++GH+ TQ Y V + +M Sbjct: 350 TTHVARHTFATTITLANKVSLENVAKMMGHASTRMTQHYARVLDQTIM 397 >gi|167771429|ref|ZP_02443482.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM 17241] gi|167666069|gb|EDS10199.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM 17241] Length = 395 Score = 33.9 bits (76), Expect = 8.7, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +AH LRH FAT L+ G + + +++GH TT Sbjct: 327 SAHDLRHMFATFLVEKGESIHYLSALMGHKSEETT 361 >gi|29375984|ref|NP_815138.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|29343446|gb|AAO81208.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] Length = 408 Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+ + +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403 >gi|320333468|ref|YP_004170179.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754757|gb|ADV66514.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 350 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 23/32 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 S H LRH++A+ L+++G D R++ +LGHS Sbjct: 288 SIRIHDLRHTYASMLIAHGIDPRTVSDLLGHS 319 >gi|212694398|ref|ZP_03302526.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855] gi|212662899|gb|EEB23473.1| hypothetical protein BACDOR_03925 [Bacteroides dorei DSM 17855] Length = 232 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT LLS+G + ++ +LGH+ + TT IY + +++ Sbjct: 164 TYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTPIYAKITVQKI 210 >gi|167719505|ref|ZP_02402741.1| phage integrase family protein [Burkholderia pseudomallei DM98] Length = 132 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ ATH L+ G +L ++ H+ +STT Y + + R +DQ Sbjct: 73 ASPHWIRHAHATHALARGAELIMVRDNRRHASISTTSAYLHSDEVRRTLQFDQA 126 >gi|153810220|ref|ZP_01962888.1| hypothetical protein RUMOBE_00601 [Ruminococcus obeum ATCC 29174] gi|153811730|ref|ZP_01964398.1| hypothetical protein RUMOBE_02123 [Ruminococcus obeum ATCC 29174] gi|153811867|ref|ZP_01964535.1| hypothetical protein RUMOBE_02260 [Ruminococcus obeum ATCC 29174] gi|149832001|gb|EDM87086.1| hypothetical protein RUMOBE_02260 [Ruminococcus obeum ATCC 29174] gi|149832133|gb|EDM87218.1| hypothetical protein RUMOBE_02123 [Ruminococcus obeum ATCC 29174] gi|149833399|gb|EDM88480.1| hypothetical protein RUMOBE_00601 [Ruminococcus obeum ATCC 29174] Length = 633 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 23/44 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H R +FAT +L L I + LGH+R T ++Y + +M Sbjct: 578 HMTRKTFATRMLRADNKLDDISNALGHARQETAEVYLERDEDKM 621 >gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1] gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1] gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1] gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 379 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS--ITQ 62 H LRH+ AT D++ +Q LGHS++ TT +Y + + + + E +++ + IT+ Sbjct: 312 HLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHAFDITK 371 Query: 63 KDKKN 67 K K+ Sbjct: 372 KTGKD 376 >gi|218281819|ref|ZP_03488158.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989] gi|218217108|gb|EEC90646.1| hypothetical protein EUBIFOR_00726 [Eubacterium biforme DSM 3989] Length = 481 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+ RHS T+ L NGGD++++Q GH++++ T +Y+++ + ++ E++++ Sbjct: 374 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 428 >gi|213646621|ref|ZP_03376674.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 177 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 25/53 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++ H LRH+ L G D R IQ LGH + T YT N+ R I+ Sbjct: 119 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 171 >gi|150003228|ref|YP_001297972.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149931652|gb|ABR38350.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 411 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+F T + L+N L+ + +LGH+ TQ Y V + + E + + Q Sbjct: 352 TTHVARHTFGTTVTLANNVPLQDVSVMLGHASTRMTQHYARVMNSSLKEAMNTVKERLAQ 411 >gi|153811766|ref|ZP_01964434.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174] gi|149832169|gb|EDM87254.1| hypothetical protein RUMOBE_02159 [Ruminococcus obeum ATCC 29174] Length = 481 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+ RHS T+ L NGGD++++Q GH++++ T +Y+++ + ++ E++++ Sbjct: 374 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 428 >gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 372 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + H LR + AT L+ G + +Q++L H ++TTQ+Y Sbjct: 316 SPHKLRATAATSLIQQGFSIYDVQNLLDHDDVTTTQLYA 354 >gi|326402598|ref|YP_004282679.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325049459|dbj|BAJ79797.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 423 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T HTLRH+FA+ G +I ++LGH+ TQ Y +++ Sbjct: 351 TPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYVHID 392 >gi|315179070|gb|ADT85984.1| phage-related integrase [Vibrio furnissii NCTC 11218] Length = 341 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 23/39 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T H LR ++AT +L D+R Q LGHS ++ T+ Y Sbjct: 278 TIHDLRRTYATQMLLATNDIRLAQQSLGHSNVNVTERYA 316 >gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302 >gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 372 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 20/33 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRHS LL G D+ +I LGHS L+TT Sbjct: 304 HALRHSHVALLLYKGVDIYAISKRLGHSDLTTT 336 >gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv. phaseolicola] Length = 319 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LR + AT+ L + D+ +Q LGH+ +STT++Y Sbjct: 267 HGLRATAATNALEHDADIAKVQMWLGHANISTTRLY 302 >gi|295084504|emb|CBK66027.1| Site-specific recombinase XerC [Bacteroides xylanisolvens XB1A] Length = 368 Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 314 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 350 >gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160] gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160] Length = 397 Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 24/35 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH+ A+ +S+G ++++Q +LGH+ + T Sbjct: 298 TPHDLRHTAASLAVSSGATVKAVQRMLGHASAAMT 332 >gi|260592937|ref|ZP_05858395.1| conserved domain protein [Prevotella veroralis F0319] gi|260535137|gb|EEX17754.1| conserved domain protein [Prevotella veroralis F0319] Length = 77 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 22 LSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 54 >gi|319940150|ref|ZP_08014503.1| phage integrase family domain-containing protein [Streptococcus anginosus 1_2_62CV] gi|319810621|gb|EFW06951.1| phage integrase family domain-containing protein [Streptococcus anginosus 1_2_62CV] Length = 421 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H RH+ A+ +L+ G + + +Q+ +GH ++TT Y + K+ E D Sbjct: 361 HLFRHTHASMMLNAGANWKELQARMGHKSITTTMDTYAELAPKKKFEAVD 410 >gi|315029961|gb|EFT41893.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 408 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+ + +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403 >gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS AT LL G + +Q +LGHS + T M IY PS+ ++ Sbjct: 321 HDLRHSAATILLVKGVHPKMVQELLGHSSIVMT-----------MNIYSHVMPSMRKE 367 >gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L] gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L] Length = 343 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRHS AT L++NG D+ I LGHS +TT Y+++ R E D Sbjct: 285 VHDLRHSHATLLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVD 335 >gi|227553215|ref|ZP_03983264.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|227177581|gb|EEI58553.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] Length = 408 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK------RMMEIYDQTH 57 H RH+ A L G L I+ +LGH + TT+IY +V+ + +E+Y H Sbjct: 346 HDGRHTNAARLRQAGVPLEDIKDMLGHKNVKTTEIYAHVSPEVKERAVNKLELYQMQH 403 >gi|197302205|ref|ZP_03167264.1| hypothetical protein RUMLAC_00932 [Ruminococcus lactaris ATCC 29176] gi|197298636|gb|EDY33177.1| hypothetical protein RUMLAC_00932 [Ruminococcus lactaris ATCC 29176] Length = 212 Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+ RHS T+ L NGGD++++Q GH++++ T +Y+++ + ++ E++++ Sbjct: 105 HSFRHSSVTYKLKLNGGDIKAVQGNSGHAQVNMVTDVYSHILDDDRRKNAELFEE 159 >gi|153809553|ref|ZP_01962221.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185] gi|149127798|gb|EDM19022.1| hypothetical protein BACCAC_03871 [Bacteroides caccae ATCC 43185] Length = 116 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RHS+AT + L+NG + ++ +LGH+ S T+ Y V Sbjct: 56 HSARHSYATSICLANGVSMENVAKMLGHADTSVTKHYARV 95 >gi|94991427|ref|YP_599527.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS10270] gi|94544935|gb|ABF34983.1| DNA integration/recombination/inversion protein [Streptococcus pyogenes MGAS10270] Length = 421 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H RH+ A+ LL+ G + + +Q +GH +STT Y + +R +E D Sbjct: 361 HLFRHTHASMLLNAGTNWKELQVRMGHKSISTTMDTYAELAPQRKLEAVD 410 >gi|262172444|ref|ZP_06040122.1| site-specific recombinase phage integrase family protein [Vibrio mimicus MB-451] gi|261893520|gb|EEY39506.1| site-specific recombinase phage integrase family protein [Vibrio mimicus MB-451] Length = 380 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 10/56 (17%) Query: 2 STTAHTLRHSFATHLLSNGGD---------LRSIQSILGHSRLSTT-QIYTNVNSK 47 S T HTLRH FAT L + L +Q LGHS +STT IY N+ S+ Sbjct: 299 SITPHTLRHVFATGTLEQWQESGFSSEMACLIWLQKQLGHSHVSTTANIYINMTSE 354 >gi|255692526|ref|ZP_05416201.1| tyrosine site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260621804|gb|EEX44675.1| tyrosine site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 318 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T++TLRHS+AT G + I LGH + TTQ Y Sbjct: 253 VTSYTLRHSWATIAKYRGVSIEMISEALGHKSIKTTQTY 291 >gi|189423359|ref|YP_001950536.1| integrase [Geobacter lovleyi SZ] gi|189419618|gb|ACD94016.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ] Length = 362 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRH+ T L D+R++Q L H +ST+ IY Sbjct: 282 SCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIY 319 >gi|16759658|ref|NP_455275.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16764086|ref|NP_459701.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142569|ref|NP_805911.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161615058|ref|YP_001589023.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552867|ref|ZP_02346618.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992991|ref|ZP_02574086.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168238858|ref|ZP_02663916.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240567|ref|ZP_02665499.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168467729|ref|ZP_02701566.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820157|ref|ZP_02832157.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446017|ref|YP_002039954.1| hypothetical protein SNSL254_A0776 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450002|ref|YP_002044748.1| DNA recombinase HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194737935|ref|YP_002113823.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197265135|ref|ZP_03165209.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200390568|ref|ZP_03217179.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929831|ref|ZP_03220852.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|213163174|ref|ZP_03348884.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428157|ref|ZP_03360907.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582132|ref|ZP_03363958.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213852661|ref|ZP_03382193.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289803851|ref|ZP_06534480.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289826644|ref|ZP_06545650.1| HbiF [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25301278|pir||AH0588 probable DNA recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16419225|gb|AAL19660.1| putative phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501950|emb|CAD05178.1| probable DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138200|gb|AAO69771.1| probable DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161364422|gb|ABX68190.1| hypothetical protein SPAB_02818 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404680|gb|ACF64902.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408306|gb|ACF68525.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194713437|gb|ACF92658.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195629209|gb|EDX48577.1| HbiF [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243390|gb|EDY26010.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288341|gb|EDY27722.1| HbiF [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603013|gb|EDZ01559.1| HbiF [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320825|gb|EDZ06026.1| HbiF [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322551|gb|EDZ10390.1| HbiF [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328859|gb|EDZ15623.1| HbiF [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339818|gb|EDZ26582.1| HbiF [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343132|gb|EDZ29896.1| HbiF [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261245980|emb|CBG23782.1| putative type 1 fimbriae regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992454|gb|ACY87339.1| putative phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157308|emb|CBW16796.1| putative type 1 fimbriae regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911743|dbj|BAJ35717.1| HbiF [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226292|gb|EFX51343.1| putative DNA recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129027|gb|ADX16457.1| DNA recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987653|gb|AEF06636.1| putative phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 188 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 25/53 (47%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++ H LRH+ L G D R IQ LGH + T YT N+ R I+ Sbjct: 130 IAPHPHMLRHACGYALADKGIDTRLIQDYLGHRNIQHTVRYTASNAGRFHGIW 182 >gi|288919365|ref|ZP_06413699.1| integrase family protein [Frankia sp. EUN1f] gi|288349254|gb|EFC83497.1| integrase family protein [Frankia sp. EUN1f] Length = 811 Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 24/50 (48%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H R FAT ++ G + +LGH L+TTQ Y V ++ Y Sbjct: 624 TPHDFRRMFATEAVTGGLPVHIAACLLGHHSLTTTQAYLAVFQDDLVRAY 673 >gi|108804429|ref|YP_644366.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765672|gb|ABG04554.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 377 Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV 44 H LRH+ AT LL G + +Q +LGH+ +S T IY++V Sbjct: 322 HDLRHTCATILLVAGKHPKYVQELLGHASISITLDIYSHV 361 >gi|325288245|ref|YP_004264426.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324963646|gb|ADY54425.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 341 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 AH LRH+ A HL G + + LGH+ TT++Y +++ Sbjct: 262 AHMLRHTRAMHLYHQGMPMMLLSEYLGHASEETTKVYAYADTE 304 >gi|296393463|ref|YP_003658347.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180610|gb|ADG97516.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 411 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 25/35 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH A++L+++G D++++Q+ L H+ TT Sbjct: 343 TFHDLRHYNASYLIASGADIKTVQTRLRHASAKTT 377 >gi|296163768|ref|ZP_06846471.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885989|gb|EFG65904.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 329 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 21/40 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + T H LRH+ A LL G D I LGH + TT IY Sbjct: 252 NVTFHVLRHTAAMRLLEAGVDPTVIALWLGHEHVDTTTIY 291 >gi|295099066|emb|CBK88155.1| Phage integrase family. [Eubacterium cylindroides T2-87] Length = 462 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+ RHS T+ L NGGD++++Q GH++++ T +Y+++ + ++ E++++ Sbjct: 356 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 410 >gi|163937928|ref|YP_001642814.1| integrase family protein [Bacillus weihenstephanensis KBAB4] gi|163865783|gb|ABY46839.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 182 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTLR +F H G +++IQ +L HS T Y +N + E++ Sbjct: 130 HTLRKTFGYHAYKAGSSIQTIQKLLNHSSEKDTIKYIGINQDNLDEVH 177 >gi|85715552|ref|ZP_01046533.1| bacteriophage integrase [Nitrobacter sp. Nb-311A] gi|85697747|gb|EAQ35623.1| bacteriophage integrase [Nitrobacter sp. Nb-311A] Length = 248 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-----QIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATH+L++G + LGHS++ T + N+ + + ++ D +I Sbjct: 181 HDLRHAHATHMLASGVHPKIASERLGHSKVGITLDLYSHVLPNMQADAVAQVDDALRAAI 240 Query: 61 TQKDK 65 ++ K Sbjct: 241 NKRTK 245 >gi|223933696|ref|ZP_03625672.1| integrase family protein [Streptococcus suis 89/1591] gi|223897649|gb|EEF64034.1| integrase family protein [Streptococcus suis 89/1591] Length = 388 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 4/53 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYD 54 H RH+ A+ LL++G + +Q LGHS LS T IY+++ N+K+ + Y+ Sbjct: 330 HGFRHTHASLLLNSGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAVSFYE 382 >gi|325300525|ref|YP_004260442.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324320078|gb|ADY37969.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 405 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 23/40 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 S T +T RH++A+ L G L I LGH L TTQIY Sbjct: 343 SLTTYTGRHTWASILRDMGTSLSVISKGLGHESLKTTQIY 382 >gi|312984164|ref|ZP_07791510.1| phage integrase [Lactobacillus crispatus CTV-05] gi|310894383|gb|EFQ43459.1| phage integrase [Lactobacillus crispatus CTV-05] Length = 371 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H+LRH+ +L+S+ D+ SI LGH+++STT Sbjct: 313 HSLRHTHVAYLISHHVDIYSISRRLGHAKISTT 345 >gi|307266069|ref|ZP_07547615.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918938|gb|EFN49166.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 291 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 21/35 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 +AH LRH+F T L+S + I + GHS + TT Sbjct: 237 SAHVLRHTFCTRLMSENVPIPIISKLAGHSSIQTT 271 >gi|298253391|ref|ZP_06977183.1| phage-like integrase [Gardnerella vaginalis 5-1] gi|297532786|gb|EFH71672.1| phage-like integrase [Gardnerella vaginalis 5-1] Length = 279 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 26/53 (49%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LRH FAT D+ ++ LGH ++TTQ Y + + I T Sbjct: 224 SGHSLRHRFATTAYCKTHDIFAVSRALGHESVATTQRYVALPVDALQNIISAT 276 >gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] Length = 374 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Query: 4 TAHTLRHSFATHLL--SNGGDLRSIQSILGHSRLSTT-QIYT 42 T H RH+FAT +L G + +Q ILGHS + T IYT Sbjct: 314 TIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYT 355 >gi|253734681|ref|ZP_04868846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] gi|253727344|gb|EES96073.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TCH130] Length = 79 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 13/20 (65%), Positives = 17/20 (85%) Query: 4 TAHTLRHSFATHLLSNGGDL 23 + H LRH+FATHLL++G DL Sbjct: 60 SPHVLRHAFATHLLNHGADL 79 >gi|253565255|ref|ZP_04842710.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251945534|gb|EES85941.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 182 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHS+AT + L+NG + ++ +LGH+ + T+ Y V Sbjct: 122 HTARHSYATSICLANGVSMENVAKMLGHADTNVTKHYARV 161 >gi|148996722|ref|ZP_01824440.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|168494705|ref|ZP_02718848.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC3059-06] gi|168576711|ref|ZP_02722569.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|225853896|ref|YP_002735408.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225856054|ref|YP_002737565.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|237649396|ref|ZP_04523648.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974] gi|237821304|ref|ZP_04597149.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974M2] gi|298254050|ref|ZP_06977636.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502114|ref|YP_003724054.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|303255201|ref|ZP_07341275.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS455] gi|303259408|ref|ZP_07345385.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|303261163|ref|ZP_07347112.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|303263491|ref|ZP_07349414.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|303265783|ref|ZP_07351681.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|303267786|ref|ZP_07353588.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|307066972|ref|YP_003875938.1| hypothetical protein SPAP_0343 [Streptococcus pneumoniae AP200] gi|147757297|gb|EDK64336.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|183575388|gb|EDT95916.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC3059-06] gi|183577520|gb|EDT98048.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|225723298|gb|ACO19151.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225725152|gb|ACO21004.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|298237709|gb|ADI68840.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|301801238|emb|CBW33912.1| degenerate integrase [Streptococcus pneumoniae INV200] gi|302597834|gb|EFL64906.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS455] gi|302638000|gb|EFL68486.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|302639342|gb|EFL69800.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|302642482|gb|EFL72827.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|302644691|gb|EFL74940.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|302647264|gb|EFL77488.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|306408509|gb|ADM83936.1| hypothetical protein SPAP_0343 [Streptococcus pneumoniae AP200] gi|332077599|gb|EGI88060.1| phage integrase family protein [Streptococcus pneumoniae GA41301] Length = 140 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 25/49 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ AT G L +I L HS TTQIY N ++ M + Sbjct: 82 TPHKLRHTGATLAKQAGMSLEAISEALIHSDTGTTQIYVNTSNVVPMAV 130 >gi|118578673|ref|YP_899923.1| phage integrase domain/SAM domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501383|gb|ABK97865.1| phage integrase domain protein SAM domain protein [Pelobacter propionicus DSM 2379] Length = 362 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + H LRH+ T L D+R++Q L H +ST+ IY Sbjct: 282 SCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIY 319 >gi|320546776|ref|ZP_08041087.1| hypothetical protein HMPREF0819_0493 [Streptococcus equinus ATCC 9812] gi|320448655|gb|EFW89387.1| hypothetical protein HMPREF0819_0493 [Streptococcus equinus ATCC 9812] Length = 71 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H +RH FAT G + + + LGHS TQ YT++ + E+ D Sbjct: 14 TPHMMRHFFATQGQIAGVPVEHMAAALGHSTAYMTQKYTHIKDEVASEVTD 64 >gi|260170629|ref|ZP_05757041.1| putative phage integrase/recombinase [Bacteroides sp. D2] Length = 368 Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 314 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 350 >gi|254498068|ref|ZP_05110827.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352704|gb|EET11480.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 194 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 25/43 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + ++H+ R +F T LL G ++++ S+ GH+ TT IY Sbjct: 137 IGASSHSGRRTFITRLLEQGVSIKAVSSLAGHANTITTAIYAE 179 >gi|125624092|ref|YP_001032575.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris MG1363] gi|124492900|emb|CAL97861.1| tyrosine recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070865|gb|ADJ60265.1| site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. cremoris NZ9000] Length = 351 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HTLRH+FAT L + + + LGHS T++YT++ S Sbjct: 296 VRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVS 341 >gi|296110177|ref|YP_003620558.1| integrase [Leuconostoc kimchii IMSNU 11154] gi|295831708|gb|ADG39589.1| integrase [Leuconostoc kimchii IMSNU 11154] Length = 360 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 24/34 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 H LRH+ A+ LL +G +L S+ LGHS ++TTQ Sbjct: 301 HGLRHTHASILLYSGVNLLSVSKRLGHSNVTTTQ 334 >gi|294500323|ref|YP_003564023.1| putative tyrosine recombinase XerC-like protein [Bacillus megaterium QM B1551] gi|294350260|gb|ADE70589.1| probable tyrosine recombinase XerC-like protein [Bacillus megaterium QM B1551] Length = 283 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 22/36 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H LRH+F L+ G D+ ++ + GHS ++ T+ Y Sbjct: 231 HKLRHTFCHELVKKGIDIATVAELAGHSDVNVTKRY 266 >gi|89098245|ref|ZP_01171130.1| integrase-recombinase [Bacillus sp. NRRL B-14911] gi|89087102|gb|EAR66218.1| integrase-recombinase [Bacillus sp. NRRL B-14911] Length = 374 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 21/37 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 HTLRHSFA + D+ I LGH ++ TT IY Sbjct: 314 PHTLRHSFAIISYLSKVDIYQIMRSLGHEKIETTVIY 350 >gi|296163644|ref|ZP_06846371.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886111|gb|EFG66002.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 355 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH T L +G L I GH L TT+ Y +++ + + + + +T I Sbjct: 284 STHTLRHLCLTDLARSGWQLHEIARFAGHQSLETTRQYIHLSGQDLADRFAKTMRQI 340 >gi|255103126|ref|ZP_05332103.1| phage integrase family protein [Clostridium difficile QCD-63q42] gi|255652385|ref|ZP_05399287.1| phage integrase family protein [Clostridium difficile QCD-37x79] Length = 202 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGG-DLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 TAH++R ++A + G D+ ++ +LGHS + T+ Y +N ++ E Sbjct: 144 TAHSMRKTYARTIYEESGFDIIRVKEMLGHSSIEETKAYLGLNEEQYQE 192 >gi|253567964|ref|ZP_04845375.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842037|gb|EES70117.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 266 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 AH RH FA L D+ + +LGH + TT+IY Sbjct: 212 AHAFRHFFAKMFLKKTKDVIQLADLLGHGSVDTTRIY 248 >gi|159904824|ref|YP_001548486.1| integrase family protein [Methanococcus maripaludis C6] gi|159886317|gb|ABX01254.1| integrase family protein [Methanococcus maripaludis C6] Length = 323 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN--SKRMME 51 H+LRH A LL G + ++ LGHS L TT Y + K+M++ Sbjct: 270 HSLRHGRAVDLLDKGFPIDIVKEYLGHSSLETTLFYAHAKEREKKMLD 317 >gi|113473868|ref|YP_718131.1| simiolar to site-specific recombinase XerD [Sphingomonas sp. KA1] gi|112821548|dbj|BAF03419.1| simiolar to site-specific recombinase XerD [Sphingomonas sp. KA1] Length = 377 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%) Query: 4 TAHTLRHSFATHLL-------SNGGDLR---SIQSILGHSRLSTTQIYTNV 44 T H LRH+FA +L N +L ++Q +LGH+ L+TT +Y V Sbjct: 307 TFHALRHTFAAAMLRFLQREAQNNPELNPLLTLQVLLGHADLATTAVYLRV 357 >gi|121610295|ref|YP_998102.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] gi|121554935|gb|ABM59084.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] Length = 191 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +AH +RH+ TH S+ DL+ ++ LGH+ ++TT IY + + +DQT Sbjct: 131 ASAHWMRHTAGTHQ-SDNMDLKVVRDNLGHANIATTSIYIHTEGDKR---HDQT 180 >gi|78067678|ref|YP_370447.1| Phage integrase [Burkholderia sp. 383] gi|77968423|gb|ABB09803.1| Phage integrase [Burkholderia sp. 383] Length = 303 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 13/67 (19%) Query: 1 MSTTAHTLRHSFATHLL------SNGGD----LRSIQSILGHSRLSTTQIY---TNVNSK 47 + T H LRH++A L ++ GD L+++Q +LGH+ + TT+IY + NS Sbjct: 230 IDATLHHLRHTYAVTALKYLQERAHNGDSINPLKTLQMLLGHTAIETTEIYLRALDANSA 289 Query: 48 RMMEIYD 54 + E D Sbjct: 290 AVQEALD 296 >gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 379 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH+ AT LLS G + + +Q +LGH+ + T Sbjct: 323 HDLRHTCATVLLSQGVNPKFVQELLGHADIKLT 355 >gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 389 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN---SKRM 49 TAH LRH+ T LL G ++ +Q LGH ++Y+++N SKR+ Sbjct: 327 TAHGLRHTHVTLLLEAGMSIKEVQERLGHENTKMVLEVYSHINKESSKRI 376 >gi|281491739|ref|YP_003353719.1| site-specific tyrosine recombinase Xers [Lactococcus lactis subsp. lactis KF147] gi|281375453|gb|ADA64963.1| Site-specific tyrosine recombinase XerS [Lactococcus lactis subsp. lactis KF147] Length = 351 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HTLRH+FAT L + + + LGHS T++YT++ S Sbjct: 296 VRVTPHTLRHTFATRLYNVSHSQVLVSNQLGHSSTKPTELYTHIVS 341 >gi|160914337|ref|ZP_02076556.1| hypothetical protein EUBDOL_00345 [Eubacterium dolichum DSM 3991] gi|158433810|gb|EDP12099.1| hypothetical protein EUBDOL_00345 [Eubacterium dolichum DSM 3991] Length = 129 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS A++L+ G +Q LGH ++ TT Q Y+++ + ++ D I K Sbjct: 51 VHDLRHSHASYLIELGMQPNLVQERLGHEKIETTLQTYSHLYPNKQNQLADYLDQIIQIK 110 Query: 64 DKK 66 D++ Sbjct: 111 DQE 113 >gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC 29799] gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC 29799] Length = 397 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 13/33 (39%), Positives = 22/33 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 H LRH++AT + +G + +Q +LGH+ + TT Sbjct: 336 HALRHTYATRAIESGIQPKVLQKLLGHASIKTT 368 >gi|192292186|ref|YP_001992791.1| integrase family protein [Rhodopseudomonas palustris TIE-1] gi|192285935|gb|ACF02316.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 210 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR + AT + G+LR++Q +LGH+++ +T Y + + +Q Sbjct: 158 HSLRRTKATLIYRRTGNLRAVQLLLGHTKIESTVRYLGTEVDDALAMAEQ 207 >gi|47060319|ref|NP_665769.2| ANL28 [Synechococcus elongatus PCC 7942] gi|81230370|ref|YP_398752.1| integrase/recombinase [Synechococcus elongatus PCC 7942] gi|51338807|sp|Q8KUV2|XERC_SYNE7 RecName: Full=Tyrosine recombinase xerC gi|47059650|gb|AAM81156.2|AF441790_27 ANL28 [Synechococcus elongatus PCC 7942] gi|81170342|gb|ABB58680.1| integrase/recombinase [Synechococcus elongatus PCC 7942] Length = 320 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 4 TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RHS T L + GG++R +Q + HSRL T Q Y + Sbjct: 262 SPHRIRHSAITAALDATGGNIRLVQKLSRHSRLETLQRYDD 302 >gi|94310184|ref|YP_583394.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354036|gb|ABF08125.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 419 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 +HTLRH+ HL+ + I +GHS S+T +Y V ++ +I Sbjct: 363 SHTLRHACVQHLVEADMPFKVIGDYVGHSHPSSTLVYGKVAVHKLRQI 410 >gi|330937767|gb|EGH41639.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. pisi str. 1704B] Length = 390 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%) Query: 6 HTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIYTNV 44 H LRH++ATH L NG D L +Q LGHS + TT +Y ++ Sbjct: 321 HMLRHTYATHTLVNLQRTPQNGLDPLVFLQRQLGHSSIQTTMVYLHL 367 >gi|315608525|ref|ZP_07883511.1| phage integrase family site-specific recombinase [Prevotella buccae ATCC 33574] gi|315249797|gb|EFU29800.1| phage integrase family site-specific recombinase [Prevotella buccae ATCC 33574] Length = 267 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH +A + L D+ + ++GH + TT+IY + I D+ Sbjct: 214 HSFRHRYAKNFLEAFNDIALLADLMGHESIETTRIYLRRTASEQQAIVDKV 264 >gi|312888616|ref|ZP_07748185.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311298930|gb|EFQ76030.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 435 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIY 41 T H RH+FAT + LSNG + ++ +LGH+ L T Y Sbjct: 344 TFHLARHTFATTICLSNGVPMETVSKMLGHTNLKQTLHY 382 >gi|303250872|ref|ZP_07337065.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246987|ref|ZP_07529049.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253724|ref|ZP_07535588.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255956|ref|ZP_07537755.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259763|ref|ZP_07541483.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302650287|gb|EFL80450.1| integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852107|gb|EFM84350.1| Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858800|gb|EFM90849.1| Integrase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861086|gb|EFM93081.1| Integrase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866153|gb|EFM98021.1| Integrase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 267 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 H+ RH FA L D+ + ++GH + TT+IY Sbjct: 214 HSFRHRFAKSFLERFNDIAFLADLMGHESIETTRIY 249 >gi|169825501|ref|YP_001695676.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168994778|gb|ACA42317.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 368 Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H R++F+ + GG L ++ LGH + TT +YT + K ++ Sbjct: 311 TPHKARYTFSKQYQAQGGTLIGLRDQLGHQNIETTSLYTTESMKEQKDV 359 >gi|312864175|ref|ZP_07724409.1| site-specific recombinase, phage integrase family [Streptococcus vestibularis F0396] gi|311100176|gb|EFQ58385.1| site-specific recombinase, phage integrase family [Streptococcus vestibularis F0396] Length = 388 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQTHPSI 60 H RH+ A+ LL++G + +Q LGHS LS T Y+++ N+K+ Y+Q SI Sbjct: 330 HGFRHTHASLLLNSGIPYKELQHRLGHSTLSMTMDTYSHLSKENAKKATSFYEQALKSI 388 >gi|291522979|emb|CBK81272.1| Phage integrase family [Coprococcus catus GD/7] Length = 463 Score = 33.5 bits (75), Expect = 10.0, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 37/55 (67%), Gaps = 5/55 (9%) Query: 6 HTLRHSFATHLLS-NGGDLRSIQSILGHSRLS-TTQIYTNV---NSKRMMEIYDQ 55 H+ RHS T+ L NGGD++++Q GH++++ T +Y+++ + ++ E++++ Sbjct: 356 HSFRHSSVTYKLKLNGGDIKAVQGDSGHAQVNMVTDVYSHILDDDRRKNAELFEE 410 >gi|289192602|ref|YP_003458543.1| integrase family protein [Methanocaldococcus sp. FS406-22] gi|288939052|gb|ADC69807.1| integrase family protein [Methanocaldococcus sp. FS406-22] Length = 185 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 23/41 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT R + A HLL++G L + L H ++TT Y N+ Sbjct: 127 STHTFRRTRALHLLNDGVPLEKVSKYLRHKSINTTMKYLNI 167 >gi|290957659|ref|YP_003488841.1| integrase [Streptomyces scabiei 87.22] gi|260647185|emb|CBG70288.1| putative integrase [Streptomyces scabiei 87.22] Length = 407 Score = 33.5 bits (75), Expect = 10.0, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 20/35 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T H LRH FA+ L+NG + + LGH + TT Sbjct: 347 TPHGLRHFFASTALANGIPIHEVSRWLGHKSIKTT 381 >gi|299822017|ref|ZP_07053904.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816645|gb|EFI83882.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 309 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T H LRH+ A+ LL G + S+ + LGHS ++TTQ Sbjct: 248 TIHGLRHTHASLLLFAGVSIASVATRLGHSSMTTTQ 283 >gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82] gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82] Length = 398 Score = 33.5 bits (75), Expect = 10.0, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH++AT + G + +Q +LGH+ + TT Y +V + + + Q + + Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLAKAVQQFEAATPTVE 395 Query: 65 KK 66 K+ Sbjct: 396 KR 397 >gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654] gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654] Length = 379 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H RH+ A+HL+SNG L + +LGH+ TTQ Y ++ Sbjct: 323 HDNRHTHASHLVSNGLTLPVVGRLLGHTNPLTTQRYAHL 361 Searching..................................................done Results from round 2 >gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] Length = 295 Score = 130 bits (329), Expect = 5e-29, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ E+YD+ HP Sbjct: 237 EITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKNRLKEVYDKAHPRA 295 >gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 296 Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ R+ E+Y Q HP Sbjct: 238 EVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPR 295 >gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] Length = 296 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP Sbjct: 233 KVSPHTFRHSFATHLLSNGADIRIVQELLGHSDVATTQIYTHIVSSKLHEVYQKAHPLTR 292 Query: 62 QKDK 65 + DK Sbjct: 293 RNDK 296 >gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 44/58 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHLL G DLRS+Q +LGH LSTTQIYT+V+++RM E+Y + HP Sbjct: 257 TPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMKEVYKEAHPRAK 314 >gi|332799335|ref|YP_004460834.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] gi|332697070|gb|AEE91527.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] Length = 295 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RHSFATHLL NG DLR +Q ILGHS +STTQIYT++ ++ E+YD THP Sbjct: 237 KITPHTFRHSFATHLLENGADLRVVQEILGHSDISTTQIYTHITRNKIKEVYDNTHPRA 295 >gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] Length = 317 Score = 126 bits (319), Expect = 7e-28, Method: Composition-based stats. Identities = 38/66 (57%), Positives = 50/66 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRH+FATH+L G DLRSIQ +LGHS LSTTQ YT+V R++E+YD+ HP Sbjct: 248 SISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLEVYDKAHPRAR 307 Query: 62 QKDKKN 67 + D++N Sbjct: 308 ETDQQN 313 >gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] Length = 312 Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G DLR++Q +LGH+ ++TTQIYT+V+ + + ++ Q HP Sbjct: 254 PVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM 4136] Length = 318 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 37/60 (61%), Positives = 48/60 (80%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+NG DLRS+Q++LGH+ LSTTQIYT+V ++RM E+Y+ HP Sbjct: 259 VQVTPHKLRHSFATHLLNNGADLRSVQTLLGHASLSTTQIYTHVTTERMKEVYEDAHPRA 318 >gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] Length = 296 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++ R+ E+Y +HP Sbjct: 238 PITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKTRLKEVYKNSHPRA 296 >gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] Length = 296 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ R+ E+Y+++HP Sbjct: 238 EIHPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYEKSHPRA 296 >gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] Length = 310 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP + Sbjct: 246 ISPHKLRHSFATHMLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARK 305 Query: 63 KDKKN 67 K +K Sbjct: 306 KGRKE 310 >gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] Length = 296 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLLSNG D+R +Q +LGHS ++TTQIYT++ S ++ E+Y + HP + Sbjct: 233 KVSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMR 292 Query: 62 QKDK 65 + K Sbjct: 293 RNTK 296 >gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 295 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++ R+ ++Y++THP Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTRNRLRDVYNRTHPRA 295 >gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] Length = 294 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATH+L G DLR+IQ +LGH+ LSTTQ YT+V+ R+ME+YD+ HP Sbjct: 233 KISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSIDRLMEVYDKAHPKAR 292 Query: 62 QK 63 +K Sbjct: 293 KK 294 >gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 303 Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRHSFATH+L+ G DLRS+Q +LGH+ +STTQIYT++ S + YD HP + Sbjct: 244 VTPHTLRHSFATHMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSAHPRARK 303 >gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] Length = 297 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATH+L G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP + Sbjct: 238 VSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRAKK 297 >gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 328 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP + Sbjct: 269 VSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTVEHLREVYASSHPRARR 328 >gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] Length = 295 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y++THP Sbjct: 237 AITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTQTRLKDVYERTHPRA 295 >gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] Length = 301 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATH+L NG DLR++Q +LGH+ +STTQIYT++ + R+ +++D+THP Sbjct: 243 PLTPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] Length = 340 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 48/58 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL G DLRS+Q +LGH++LSTTQIYT+V+++R+ EIY +THP Sbjct: 283 ISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 298 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 47/60 (78%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RHSFATHLL NG DLR++Q LGHS LSTTQIYT+V ++R+ ++YD+THP Sbjct: 239 LRVSPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] Length = 302 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPRAK 302 >gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 295 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQIYT++ +R+ ++Y ++HP Sbjct: 237 KITPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQIYTHLTKQRLKDVYSKSHPRA 295 >gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773] Length = 298 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YDQ HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDQYHPRA 298 >gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] Length = 302 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPRAK 302 >gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 294 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ E+Y +THP Sbjct: 236 EITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTKGRLKEVYARTHPRA 294 >gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] Length = 328 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 47/60 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATHLLSNG DLR++Q +LGH+ +STTQIYT++ R+ E+YD++HP Sbjct: 258 EVTPHTLRHSFATHLLSNGADLRAVQEMLGHADVSTTQIYTHLTMGRLREVYDRSHPRAR 317 >gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] Length = 297 Score = 123 bits (311), Expect = 6e-27, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 47/65 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RHS+ATHLL G D+R++Q +LGH RLSTT+IYT+++ +R+ E+Y +THP Sbjct: 232 KITPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRSR 291 Query: 62 QKDKK 66 ++ Sbjct: 292 EEKND 296 >gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] Length = 302 Score = 123 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPRAK 302 >gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS] gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS] Length = 302 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATH+LS G DLRS+Q +LGH+ +STTQIYT++ S+ + Y++ HP Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPRAK 302 >gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] Length = 293 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V+ ++ME+YD+ HP Sbjct: 233 KVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKAHPKAR 292 Query: 62 Q 62 + Sbjct: 293 E 293 >gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] Length = 312 Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++ Y Q HP I Sbjct: 248 KVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIK 307 Query: 62 QKD 64 + + Sbjct: 308 KHN 310 >gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHLL+NG DLR +Q +LGH+ +STTQIYT+++ +R+ E+YD+THP Sbjct: 240 VTPHMLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVERLREVYDKTHPRA 297 >gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 313 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT+RH+FATHLL G DLR +Q +LGH RL+TTQIYT+++ ++ E+Y Q HP ++ Sbjct: 247 VSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASR 306 Query: 63 KDKKN 67 + N Sbjct: 307 DNIDN 311 >gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] Length = 299 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQ+YT++ R+ E+YD+THP Sbjct: 242 ITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYTHITRTRIKEVYDKTHPRA 299 >gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4] gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4] Length = 302 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT++ S R+ E+Y + HP + Sbjct: 241 SPHTLRHSFATHLLENGADLRVVQELLGHVSISTTQIYTHLTSTRVREVYRRAHPRSRKT 300 Query: 64 D 64 + Sbjct: 301 E 301 >gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] Length = 301 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 50/64 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL NG DLRS+Q++LGH +STTQIYT+++ R+ ++Y++THP Sbjct: 238 KVSPHTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAK 297 Query: 62 QKDK 65 + +K Sbjct: 298 ENNK 301 >gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] Length = 298 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 240 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 298 >gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] Length = 303 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H LRHSFATHLL G DLR++Q +LGH LSTTQ YT++N + ++YDQ HP Sbjct: 239 VTVTPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTHINIDHLSKVYDQAHPQA 298 Query: 61 TQK 63 +K Sbjct: 299 QKK 301 >gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] Length = 302 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++++R+ E+Y + P Sbjct: 244 TVSPHMLRHSFATHLLENGADLRMVQELLGHADISTTQIYTHISTQRLQEVYRKYFPRA 302 >gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21] gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21] Length = 293 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 47/61 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V+ ++ME+YD++HP Sbjct: 233 KVSPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVSIDKLMEVYDKSHPKAR 292 Query: 62 Q 62 + Sbjct: 293 K 293 >gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7] gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7] Length = 302 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RH+FATHLL NG DLRSIQ +LGHS +STT IYT+++++++ Y Q HP I Sbjct: 238 KVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPRIK 297 Query: 62 QKD 64 + + Sbjct: 298 KHN 300 >gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 302 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL G DLR +Q +LGH+ +STT+ YT+V R+ E+Y HP Sbjct: 236 EVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHPRA 294 >gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] Length = 295 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHPRA 295 >gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341] gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341] Length = 310 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 295 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHLL NG DLRS+Q++LGH+ L+TTQIYT+V +R+ I+++ HP Sbjct: 237 TISPHTLRHSFATHLLENGADLRSVQAMLGHADLATTQIYTHVTRERLKRIHEEYHPR 294 >gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121] Length = 295 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQYHPRA 295 >gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] Length = 311 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573] gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573] Length = 266 Score = 122 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 262 Query: 63 KDKK 66 K+K Sbjct: 263 KNKD 266 >gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 311 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 34/65 (52%), Positives = 49/65 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT+++ +++ + Y Q HP Sbjct: 243 LSIHPHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHLSKEKLRDNYLQFHPHA 302 Query: 61 TQKDK 65 QK + Sbjct: 303 KQKKE 307 >gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4] gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 294 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATH+L G DLR+IQ +LGHS LSTTQ YT+V+ R+ME+YD+ HP Sbjct: 234 KVSPHTLRHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTHVSIDRLMEVYDKAHPKAR 293 >gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 305 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP Sbjct: 247 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHPRA 305 >gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar chinensis CT-43] Length = 299 Score = 122 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|332799166|ref|YP_004460665.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] gi|332696901|gb|AEE91358.1| Tyrosine recombinase xerC [Tepidanaerobacter sp. Re1] Length = 300 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 47/60 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATH+L+NG DL+++Q +LGHS LSTTQIYT+V +R+ E+YD+T P Sbjct: 239 EVSPHTLRHTFATHMLNNGADLKTVQELLGHSSLSTTQIYTHVTKERLKEVYDKTFPHNK 298 >gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] Length = 299 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 298 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHPRA 298 >gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL G DLR +Q +LGH+ +STT+ YT+V R+ E+Y HP Sbjct: 236 EVTPHTLRHSFATHLLEGGADLRVVQELLGHADISTTERYTHVTPHRLREVYRNAHPRA 294 >gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] Length = 299 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] Length = 310 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 45/65 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP + Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKK 305 Query: 63 KDKKN 67 K Sbjct: 306 KGSDQ 310 >gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 297 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP Sbjct: 240 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHPRA 297 >gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] Length = 302 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MKISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+Y++ HP Sbjct: 238 NVTPHTLRHSFATHILENGADLRVVQELLGHADISTTQIYTHISKKRLAEVYNKYHPRA 296 >gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] Length = 305 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 241 INPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQVYTHLDFQHLAKVYDAAHPRARK 300 Query: 63 KDKK 66 + + Sbjct: 301 RKRD 304 >gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] Length = 305 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR +Q +LGH+ ++TTQIYT+V S R+ E+ HP + Sbjct: 246 VSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVASDRLSEVVRSKHPLAKK 305 >gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] Length = 297 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 45/59 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATH+L G DLR IQ ILGH+ LS+TQIYT+V R+ME+YD+ HP Sbjct: 238 VPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHPR 296 >gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99] Length = 297 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|332312396|gb|EGJ25491.1| Tyrosine recombinase xerD [Listeria monocytogenes str. Scott A] Length = 302 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 244 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 302 >gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21] gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21] Length = 298 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATH+L NG DLR++Q +LGHS +STTQIYT++ + R+ IYD++HP Sbjct: 240 SLTPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 294 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 33/61 (54%), Positives = 43/61 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H +RHSFATHLL G DLRS+Q +LGHS +STTQIYT V+ R+ + Y + HP Sbjct: 234 VNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRA 293 Query: 61 T 61 Sbjct: 294 K 294 >gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816] gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220] Length = 297 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] Length = 310 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586] gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586] Length = 310 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603] gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603] Length = 301 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 301 >gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] Length = 301 Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 242 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 301 >gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis str. Al Hakam] gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al Hakam] gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 302 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] Length = 300 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H +RH+FATH+L G DLRS+Q +LGH+ LSTTQIYT+V RM E+Y Q HP Sbjct: 241 FTISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA 300 >gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.] Length = 310 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 41/59 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATH+L G DLR +Q +LGH LSTTQ YT+V R+ME YD+ HP Sbjct: 251 VPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHVGIDRLMETYDKAHPR 309 >gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514] gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514] Length = 306 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRHSFATHLL +G DLR IQ +LGH+ +STT+IYT+V+ R+ E++ + HP Sbjct: 248 NVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRKFHPR 305 >gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] Length = 309 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 46/62 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP + Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKK 305 Query: 63 KD 64 K+ Sbjct: 306 KE 307 >gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223] gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223] Length = 310 Score = 121 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 297 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603] gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603] Length = 310 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] Length = 295 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQFHPRA 295 >gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 297 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067] gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171] Length = 297 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676] gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676] Length = 299 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 299 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] Length = 296 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296 >gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4] Length = 267 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 262 Query: 63 KDKKN 67 K+K + Sbjct: 263 KNKDD 267 >gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 299 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] Length = 299 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 48/63 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP + Sbjct: 240 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 299 Query: 63 KDK 65 ++K Sbjct: 300 RNK 302 >gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] Length = 298 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDAFHPRA 298 >gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] Length = 310 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 46/65 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP + Sbjct: 246 ISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKK 305 Query: 63 KDKKN 67 + K Sbjct: 306 RSNKE 310 >gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] Length = 311 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 302 >gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264] gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264] gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] Length = 299 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] Length = 296 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296 >gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12] gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12] Length = 301 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 47/66 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR +Q +LGH R+STTQIYT++ S+++ + Y +HP Sbjct: 235 KVSPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAI 294 Query: 62 QKDKKN 67 +K+ K Sbjct: 295 KKETKE 300 >gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296 >gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] Length = 311 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y++ HP Sbjct: 245 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYEKAHPRA 302 >gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] Length = 302 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262] gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262] gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378] gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023] Length = 297 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] Length = 296 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 238 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 296 >gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] Length = 306 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R++Q +LGHS +TTQIYT V R+ E+Y +HP Sbjct: 246 VSPHTLRHSFATHLLDGGADIRTVQELLGHSSATTTQIYTRVTVDRLREVYATSHPRA 303 >gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] Length = 255 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSFATHLL G D+R +Q +LGHS LSTTQIYT V+ + E+Y HP Sbjct: 194 VHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYTMVSRDTVREVYALAHPRA 253 >gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 14579] gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 14579] Length = 294 Score = 121 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 235 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 294 >gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] Length = 311 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. A1055] gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI] gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 299 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L] gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus E33L] Length = 299 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein [polymorphum gilvum SL003B-26A1] gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 316 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 38/58 (65%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++E YD+ HP Sbjct: 258 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTEVDTARLLEAYDKAHPR 315 >gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] Length = 325 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT V R++E++ + HP Sbjct: 267 TVSPHTLRHSFATHLLAGGADLRAVQELLGHASISTTQIYTRVEVSRLLEVHAKFHPR 324 >gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] Length = 311 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724] gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724] Length = 300 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR +Q +LGH R+STTQIYT++ + ++ Y +HP Sbjct: 235 KISPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIRRTYTVSHPRAI 294 Query: 62 QKDKKN 67 +K+++ Sbjct: 295 KKEREE 300 >gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] Length = 299 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC 33323] gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] Length = 302 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 302 >gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] Length = 302 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS ++TTQIYTN+ K ++E+Y+Q HP Sbjct: 244 NVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQAHPRA 302 >gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 10987] gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus ATCC 10987] Length = 299 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1] gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 299 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] Length = 312 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAKVYDQAHPRARK 306 Query: 63 KDKKN 67 K+ K+ Sbjct: 307 KNNKD 311 >gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 48/63 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP + Sbjct: 235 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKK 294 Query: 63 KDK 65 ++K Sbjct: 295 RNK 297 >gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187] gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187] gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] Length = 299 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] Length = 266 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 262 Query: 63 KDKK 66 K+ + Sbjct: 263 KNGE 266 >gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 312 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/63 (57%), Positives = 48/63 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATH+L G DLR +Q +LGHSR+STTQ YT++N ++M+ YD+ HP + Sbjct: 246 VSPHTLRHSFATHMLQAGADLRIVQELLGHSRISTTQRYTHLNLDQVMQTYDKAHPLARE 305 Query: 63 KDK 65 KDK Sbjct: 306 KDK 308 >gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] Length = 311 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385] gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385] Length = 311 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S] gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] Length = 297 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395] gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395] gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395] gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] Length = 311 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH ++TTQIYT+++ + + ++YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRARK 306 Query: 63 KDKKN 67 K+K + Sbjct: 307 KNKDD 311 >gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 266 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 262 Query: 63 KDKK 66 K+ + Sbjct: 263 KNGE 266 >gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e] gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 1988] gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561] gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161] gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e] gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] Length = 297 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 295 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 37/58 (63%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ + TTQIYT++ K++ EIYD THP Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQELLGHADIGTTQIYTHLTRKKIREIYDHTHPRA 295 >gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] Length = 302 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 300 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ HTLRHSFATHLL G D+RS+Q +LGH L TTQIYT+V++ R+ E Y++ HP + Sbjct: 241 TSPHTLRHSFATHLLDAGADIRSVQELLGHKSLVTTQIYTHVSTTRLKEAYEKAHPRAQR 300 >gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] Length = 302 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +R++++YD+ HP Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA 295 >gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 295 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA 295 >gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114] gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] Length = 303 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + G+LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 243 ISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKK 302 Query: 63 K 63 K Sbjct: 303 K 303 >gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGHS +STTQIYT+++ KR+ +IYD++HP Sbjct: 242 NVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHISKKRLSKIYDESHPHA 300 >gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] Length = 303 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + G+LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 243 ISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKK 302 Query: 63 K 63 K Sbjct: 303 K 303 >gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] Length = 318 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHLL G DLRS+Q +LGH LSTTQIYT++++ R+++ YDQ HP Sbjct: 259 ITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQAHPHAQ 317 >gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] Length = 295 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKTQIRQMYNQFHPRA 295 >gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 315 Score = 120 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V +R+ E+ + HP Sbjct: 255 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVETHHPLAKG 314 Query: 63 K 63 + Sbjct: 315 R 315 >gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 295 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA 295 >gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118] gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius UCC118] Length = 297 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA 297 >gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803] gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803] Length = 302 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 298 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD+ HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDEYHPRA 298 >gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y Q HP Sbjct: 263 VHVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQALREVYAQAHPRA 322 Query: 61 TQ 62 + Sbjct: 323 VR 324 >gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] Length = 295 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++ K + E+Y + HP Sbjct: 238 VTPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHISHKHLTEVYQKFHPRA 295 >gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] Length = 296 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +R++++YD+ HP Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA 296 >gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] Length = 295 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +R++++YD+ HP Sbjct: 237 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDVYDKYHPRA 295 >gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 295 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ +IY +THP Sbjct: 237 EITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHVTRTRIKDIYAKTHPRA 295 >gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius CECT 5713] Length = 297 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 239 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA 297 >gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] Length = 327 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y HP Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHPRA 327 >gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] Length = 302 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 243 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 302 >gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] Length = 297 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] Length = 298 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT+++ KR+ E+YD HP Sbjct: 241 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISKKRLSEVYDNFHPRA 298 >gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] Length = 353 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+RS+Q +LGH+ ++TTQIYT V + E+Y HP Sbjct: 295 VSPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVTVDALREVYVTAHPRAR 353 >gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1] gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1] Length = 296 Score = 120 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ R+ E+Y + HP Sbjct: 238 PITPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKLRLREVYTKAHPRA 296 >gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] Length = 296 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296 >gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Sterne] gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. CNEVA-9066] gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Western North America USA6153] gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Kruger B] gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Vollum] gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Australia 94] gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] Length = 299 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1] gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] Length = 296 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296 >gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] Length = 297 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297 >gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] Length = 307 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302 Query: 62 QKDK 65 +KD+ Sbjct: 303 KKDE 306 >gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] Length = 310 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 46/65 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP + Sbjct: 246 ISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRARK 305 Query: 63 KDKKN 67 + K Sbjct: 306 RGNKE 310 >gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 303 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 246 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 303 >gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87] gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87] Length = 295 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 300 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+ R+ E+Y Q HP Sbjct: 242 EITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTHVSKTRLSEVYKQFHPRA 300 >gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] Length = 294 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATH+L G DLR +Q +LGHS +STTQIYT++ ++RM EIY Q HP Sbjct: 236 EVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNERMKEIYKQAHPR 293 >gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01] Length = 310 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+ + Sbjct: 307 KNGE 310 >gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] Length = 295 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ +IY+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHPRA 295 >gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] Length = 307 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302 Query: 62 QKDK 65 +KD+ Sbjct: 303 KKDE 306 >gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] Length = 297 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 239 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 297 >gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] Length = 296 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 238 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 296 >gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] Length = 290 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLADIYNRAHPRA 290 >gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1] gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1] Length = 298 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 45/60 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ + HT+RHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V K++ +Y +HP Sbjct: 239 LNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKKKIKRVYKMSHPRA 298 >gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 315 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 33/61 (54%), Positives = 45/61 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRHSFATHLLSNG DLR IQ +LGH+ +STTQIYT+V+ +R+ ++ + HP Sbjct: 255 INVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQRLKAVHHRFHPRA 314 Query: 61 T 61 Sbjct: 315 K 315 >gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] Length = 295 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ +IY+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKAQIRQIYNQYHPRA 295 >gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] Length = 310 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+ + Sbjct: 307 KNGE 310 >gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2] Length = 315 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ + + E+Y +HP Sbjct: 256 EVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTKVSEETLREVYATSHPRAR 315 >gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str. Toulouse] gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse] Length = 322 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H+LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++ R++EIY + HP Sbjct: 264 TATPHSLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDRLLEIYQKAHPRA 322 >gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment'] Length = 295 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +Y++ HP Sbjct: 238 VTPHTLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTHVSRAHLKTVYNRYHPRA 295 >gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM 2380] Length = 295 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFATHLL NG DLR++Q++LGH+ +STTQIYT+V +RM I+ Q HP Sbjct: 237 NITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYTHVTRERMKVIHQQHHPR 294 >gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] Length = 229 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 166 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 225 Query: 63 KDKK 66 K+ + Sbjct: 226 KNGE 229 >gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] Length = 307 Score = 119 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302 Query: 62 QKDK 65 +KD+ Sbjct: 303 KKDE 306 >gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus 10329] Length = 310 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+ + Sbjct: 307 KNGE 310 >gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] Length = 308 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP + Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRAKK 305 Query: 63 KDK 65 K K Sbjct: 306 KGK 308 >gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] Length = 309 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT+V + ++Y HP Sbjct: 251 VSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHVTVDALRDVYAGAHPRAR 309 >gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] Length = 301 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301 >gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] Length = 301 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R++Q +LGH+ ++TTQIYT++ + + E++ HP Sbjct: 244 ISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHITADNLREVWRMAHPRA 301 >gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB] gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans MPOB] Length = 294 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRHSFATHLL NG DLRS+Q++LGH+ +STTQIYT+V KR+ E++ + HP Sbjct: 236 NLTPHVLRHSFATHLLENGADLRSLQAMLGHADISTTQIYTHVAKKRLKEVHLKFHPR 293 >gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1] gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1] Length = 301 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K+++ +Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNVYQKTHPRL 301 >gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 310 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+ + Sbjct: 307 KNGE 310 >gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] Length = 296 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296 >gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] Length = 302 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 49/64 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT+RHSFATHLL NG DLRSIQ +LGHS +STT IYT+++++++ + Y HP + Sbjct: 238 KISPHTIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQKIKKEYQLFHPRVK 297 Query: 62 QKDK 65 +K+K Sbjct: 298 KKNK 301 >gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 310 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATHLL G DLR++Q +LGH +STTQIYT+VN RM E+Y++ HP Sbjct: 242 VSPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 280 Score = 119 bits (301), Expect = 9e-26, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + H LRH+FATHLL G DLRSIQ +LGH+ LSTTQIYT V+++ + E Y +THP Sbjct: 222 SISPHKLRHTFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEHLKESYFRTHPRA 280 >gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] Length = 301 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026] Length = 307 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302 Query: 62 QKDK 65 +KD+ Sbjct: 303 KKDE 306 >gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATH+L+NG DL+++Q +LGH LSTTQIYT+V +R+ E+YD+ P Sbjct: 240 KISPHTLRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHVTKERLKEVYDKAFP 296 >gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] Length = 299 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 37/58 (63%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K ++E+Y +THP Sbjct: 242 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKHILEVYIETHPRA 299 >gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] Length = 362 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 306 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 362 >gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314] gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] Length = 304 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT+V ++ + +++ HP Sbjct: 247 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTAENLRQVWRSAHPRA 304 >gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3] gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3] Length = 443 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V R+ E+Y +HP Sbjct: 355 VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYAASHPRA 412 >gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323] gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC 33323] gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] Length = 307 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302 Query: 62 QKDK 65 +KD+ Sbjct: 303 KKDE 306 >gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGSDLRAVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] Length = 304 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR++Q +LGHS +STTQIYT+++ + + ++YD HP Sbjct: 240 KLHPHMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLSKVYDAAHPRAR 299 Query: 62 QKDK 65 +K+K Sbjct: 300 RKNK 303 >gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 295 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y++ HP Sbjct: 237 SLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHPRA 295 >gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] Length = 296 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296 >gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum SS9] gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9] Length = 313 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP + Sbjct: 251 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 310 >gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] Length = 295 Score = 119 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RHSFATHLL NG DLRS+Q +LGH+ +STTQIYT V ++ ++Y+++HP Sbjct: 237 EITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQVTKHKLRDVYEKSHPRA 295 >gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] Length = 295 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47] Length = 300 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T+ HTLRHSFATHLL G D+RS+Q +LGH L+TTQIYT+V++ + ++Y++ HP Sbjct: 242 TSPHTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTHVSAANLRQVYEKAHPRSA 300 >gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] Length = 307 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y + P Sbjct: 243 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQKFFPRKD 302 Query: 62 QKDK 65 +KD+ Sbjct: 303 KKDE 306 >gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] Length = 296 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++ +RM +Y HP Sbjct: 238 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKQRMSSVYKTYHPRA 296 >gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] Length = 299 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT++ KRM +Y HP Sbjct: 241 EVTPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHITKKRMSSVYKTYHPRA 299 >gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] Length = 302 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP Sbjct: 244 ISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302 >gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] Length = 302 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFAT+LL NG DLR +Q +LGHS +STTQIYT+V+ K + E Y++ HP Sbjct: 244 ISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRAK 302 >gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 373 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H+LRHSFATHLL G D+RS+Q +LGH RL+TTQ YT V+ + +M+ YDQ HP Sbjct: 311 FTVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQAHPRS 370 Query: 61 TQK 63 ++ Sbjct: 371 GKR 373 >gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 41/63 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHSFATHLL NG DLR +Q +LGHS LSTTQ+Y +V +R+ + Y HP Sbjct: 242 VHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHAHPRA 301 Query: 61 TQK 63 +K Sbjct: 302 QEK 304 >gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] Length = 300 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP Sbjct: 243 ITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHPRA 300 >gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] Length = 296 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] Length = 300 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP Sbjct: 243 ITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYQKTHPRA 300 >gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium diphtheriae NCTC 13129] gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae] Length = 302 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 42/59 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+ ATHLL NG DLR +Q +LGHS L+TTQIYT+V+++R+ E Y HP + Sbjct: 243 PHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQRLKEAYKNAHPRAQKN 301 >gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 336 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331 Query: 64 DKKN 67 + + Sbjct: 332 KQDD 335 >gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae L20] gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 336 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331 Query: 64 DKKN 67 + + Sbjct: 332 KQDD 335 >gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] Length = 316 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + + E+Y +HP Sbjct: 257 VSPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVEHLREVYATSHPRAR 315 >gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 312 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/64 (54%), Positives = 49/64 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRHSFA+H+L G DLRS+Q +LGHSR+STTQ YT+++ ++M +YD HP Sbjct: 245 SISPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAA 304 Query: 62 QKDK 65 +KD+ Sbjct: 305 KKDE 308 >gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT] gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT] Length = 291 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 45/60 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L N DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP +K Sbjct: 232 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRKK 291 >gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 296 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296 >gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G DLR++Q +LGH+ LSTTQ YT++N + +YD+ HP Sbjct: 271 VSPHALRHSFATHLLEMGADLRTVQELLGHASLSTTQRYTHLNLDHLTAVYDKAHPRAQ 329 >gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] Length = 299 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3] gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3] Length = 299 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] Length = 295 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V +R+ +++Q HP Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHPR 294 >gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218] Length = 309 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP + Sbjct: 246 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAHK 305 Query: 63 KDKK 66 K K+ Sbjct: 306 KAKE 309 >gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum USDA 110] gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 39/58 (67%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLLS GGDLR+IQ +LGHS LSTTQIYT ++S+R++E+Y HP Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHSSLSTTQIYTGIDSERLLEVYASAHPR 320 >gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] Length = 323 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 46/66 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + TT HTLRH+FATHLL G D+RS+Q +LGH L TTQIYT+V++ + +Y++ HP Sbjct: 248 LRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYERAHPRA 307 Query: 61 TQKDKK 66 K + Sbjct: 308 RNKSGR 313 >gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 296 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296 >gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 336 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331 Query: 64 DKKN 67 + + Sbjct: 332 KQDD 335 >gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] Length = 299 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHILRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 299 >gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] Length = 296 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 297 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSKFHPRA 297 >gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] Length = 295 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295 >gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10] gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] Length = 295 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ + TTQIYT++ S+ + +YD+THP Sbjct: 237 EITPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAVYDRTHPRA 295 >gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] Length = 336 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 276 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRAR 335 >gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] Length = 300 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG D+R++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 244 TPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYTHVSKTRLKDVYSQFHPRA 300 >gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909] Length = 295 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295 >gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21] gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21] Length = 292 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +RM +++ + HP Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHAEFHPR 291 >gi|158313594|ref|YP_001506102.1| integrase family protein [Frankia sp. EAN1pec] gi|158108999|gb|ABW11196.1| integrase family protein [Frankia sp. EAN1pec] Length = 383 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V + E+Y +HP + Sbjct: 277 ASPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTMDHLREVYASSHPRALR 336 Query: 63 KD 64 + Sbjct: 337 RP 338 >gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 336 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331 Query: 64 DKKN 67 + + Sbjct: 332 KQDD 335 >gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] Length = 296 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296 >gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 14579] gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264] gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264] gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar chinensis CT-43] Length = 296 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] Length = 298 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS ATH++ G DLR +Q +LGHS L TTQIYT+V+++R+ +YD+ HP Sbjct: 240 EISPHSLRHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLKNVYDRAHPRA 298 >gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 296 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] Length = 346 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + EIY HP Sbjct: 287 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHPRA 344 >gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068] gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068] Length = 314 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRHSFATHLLS G DLR +Q +LGH+ + TTQIYT+V+ R+ +I+ Q HP Sbjct: 256 SMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 336 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 272 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331 Query: 64 DKKN 67 + + Sbjct: 332 KQDD 335 >gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400] Length = 295 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 46/57 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL NG DLRS+Q++LGH+ LSTTQIYT+V +R+ +++Q HP Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQAMLGHADLSTTQIYTHVTRERLKRLHEQFHPR 294 >gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3] gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3] Length = 296 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296 >gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 298 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298 >gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 301 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301 >gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 304 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP + Sbjct: 242 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 301 >gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13] Length = 296 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V RM ++Y HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMKDVYSMFHPRA 296 >gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10] gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10] Length = 302 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++ HP Sbjct: 242 KISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPRNK 301 >gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 298 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 241 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 298 >gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] Length = 296 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296 >gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia stuttgartiensis] Length = 295 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL NG DLR++Q +LGH +STTQIYT+VN + + I+ + HP Sbjct: 237 AISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] Length = 299 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 299 >gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] Length = 307 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 45/60 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M T H +RHS+ATHLL NG DLR +Q +LGH++LSTTQIYT+VN R+ E +DQ HP Sbjct: 248 MDLTPHKIRHSYATHLLDNGADLRLVQELLGHAKLSTTQIYTHVNIGRLKEAFDQAHPRA 307 >gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1] gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1] Length = 285 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 229 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 285 >gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 298 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL G D+R++Q +LGH+ ++TTQIYT+V + + E++ HP Sbjct: 241 ISPHTLRHSFATHLLEGGADVRTVQELLGHASVTTTQIYTHVTPENLREVWRTAHPR 297 >gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2] gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2] Length = 329 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS+ATHLL+ G DLR +Q +LGH+ L+TTQIYT+V+ R+ +IYD+ HP Sbjct: 273 SPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDIYDKAHPRA 329 >gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] Length = 297 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V RM ++Y + HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYSKFHPRA 297 >gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] Length = 302 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 41/62 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHSFATHLL NG DLR +Q +LGHS LSTTQIY +V+ +R+ Y+ HP Sbjct: 241 VHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRA 300 Query: 61 TQ 62 + Sbjct: 301 KE 302 >gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 315 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 40/58 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHLL G DLR+IQ +LGHS +STTQIYT+V+ + E Y HP Sbjct: 255 HPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRAK 312 >gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] Length = 300 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K + ++Y +THP Sbjct: 243 ITPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHIFDVYLKTHPRA 300 >gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028] Length = 295 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295 >gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] Length = 301 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HT RHSFATHLL G D+R +Q +LGHS LSTTQIYT+V ++ + E+YD HP Sbjct: 242 KVHPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQHLKEVYDHAHPRNK 301 >gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 336 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR+IQ +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 272 HPHKLRHSFATHMLEASGDLRAIQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 331 Query: 64 DKKN 67 + + Sbjct: 332 KQDD 335 >gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] Length = 299 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 299 >gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W] gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 310 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V +R+ E+Y HP + Sbjct: 251 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVERLREVYATAHPRAVR 310 >gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296 >gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987] gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187] gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987] gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187] gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 308 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 +S + H LRHSFATH+L G DLR++Q ILGH LSTTQ YT+V+ ++ME+YD HP Sbjct: 249 VSLSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTHVSMDKLMEVYDHAHPR 307 >gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 47/63 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH+FA+HLL G DLR IQ +LGH+ LSTTQIYT+V+ K ++E+YD++HP Sbjct: 239 KIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPLSK 298 Query: 62 QKD 64 + + Sbjct: 299 EDE 301 >gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144] gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045] Length = 295 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA 295 >gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames] gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne] gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. Al Hakam] gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNEVA-9066] gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A1055] gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Western North America USA6153] gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kruger B] gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vollum] gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Australia 94] gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI] gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames] gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne] gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al Hakam] gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] Length = 297 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y+Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHPRA 297 >gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 302 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 240 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARR 299 >gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 318 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH FATHLL G D+R++Q +LGH+ ++TTQIYT V++ + E+Y HP Sbjct: 257 VPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHPRA 316 Query: 61 T 61 Sbjct: 317 R 317 >gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L] gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L] gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A] gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A] Length = 322 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y HP Sbjct: 264 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYRTAHPRA 322 >gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYSQYHPRA 297 >gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] Length = 300 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATH+L+ G DLR++Q +LGH LSTTQIYT+V R+ +Y HP Sbjct: 241 IHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHPRA 300 >gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] Length = 300 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATH+L+ G DLR++Q +LGH LSTTQIYT+V R+ +Y HP Sbjct: 241 IHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLKAVYMNHHPRA 300 >gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] Length = 297 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y+Q HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKARLKDVYNQFHPRA 297 >gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus WK1] gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 244 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 300 >gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1] gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1] Length = 304 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR+IQ +LGH+ +STTQ+YT+++ + + ++YDQ HP + Sbjct: 238 VHPHMLRHSFATHMLESSGDLRAIQELLGHADISTTQVYTHLDFQHLAQVYDQAHPRARR 297 Query: 63 KD 64 + Sbjct: 298 RK 299 >gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621] gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 296 >gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL NG DLRS+Q +LGHS +STTQIYT+++ RM ++Y + HP Sbjct: 238 EISPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTHISQTRMRDVYRKHHPRA 296 >gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] Length = 306 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP Sbjct: 248 TATPHALRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHPKA 306 >gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125] Length = 303 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATHLL+NG DLR +Q +LGH LSTTQ+YT+V R+ ++Y HP Sbjct: 246 VSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLRDVYRTHHPRA 303 >gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18] gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18] Length = 292 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V +R+ ++ + HP Sbjct: 235 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSTTQIYTHVTRERLKRLHAEFHPR 291 >gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis X14] gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14] Length = 300 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++E+Y HP Sbjct: 242 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLEVYKTAHPRA 300 >gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] Length = 299 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT+++S+ M EIY +T P Sbjct: 241 EVSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTHIHSQHMREIYKKTFPRA 299 >gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] Length = 269 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 45/64 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 203 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 262 Query: 63 KDKK 66 ++ Sbjct: 263 RNDD 266 >gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 309 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 40/60 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 HTLRHSFATH+L G DLR+IQ ILGHS +STTQIY +V+ + E Y HP K Sbjct: 249 HPHTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRAHLK 308 >gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] Length = 311 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 44/64 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+V+ KR+ +YD HP + Sbjct: 247 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHVDWKRLAAVYDAAHPRAKR 306 Query: 63 KDKK 66 + ++ Sbjct: 307 ERER 310 >gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803] gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803] Length = 298 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ +Q HP Sbjct: 240 KVSPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHVDRSHLRQVMEQFHPR 297 >gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 294 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQIYT+V+++R+ +YDQ HP Sbjct: 238 SPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQIYTHVSAQRLKNVYDQAHPRA 294 >gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] Length = 296 Score = 118 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 238 SISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 296 >gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] Length = 308 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 38/65 (58%), Positives = 49/65 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+V+ R+ ++YDQTHP Sbjct: 243 IDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHVDFDRLAQVYDQTHPRA 302 Query: 61 TQKDK 65 QK K Sbjct: 303 QQKVK 307 >gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] Length = 296 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 238 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLQDVYKKYHPRA 296 >gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803] gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803] Length = 296 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 291 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATHLL+ G DLR +Q ++GH+ ++TTQIYT+V+ R+ +++ Q HP Sbjct: 234 VSPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup] gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup] Length = 322 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 37/58 (63%), Positives = 48/58 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT+V++ +++IY + HP Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQIYTHVDTDHLLKIYQKAHPR 321 >gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] Length = 307 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG DLR++Q +LGH LSTTQIYT+V + + Y + P + Sbjct: 241 KVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTHVTMAHLQDEYQKFFPRNS 300 Query: 62 QKDKK 66 +KDKK Sbjct: 301 RKDKK 305 >gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 308 >gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1] gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1] Length = 324 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M T H LRHS+ATHLL+ G DLR +Q +LGH++L+TTQ+YT+V+ R+ EIY + HP Sbjct: 265 MDLTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] Length = 355 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R+M++Y HP Sbjct: 297 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDAERLMDVYQSAHPRA 355 >gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 328 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 64/71 (90%), Positives = 65/71 (91%), Gaps = 4/71 (5%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56 +STTAHTLRHSFATHLLSNGGDLRSIQSILGH RLSTTQIYTNVNSK MMEIYDQT Sbjct: 258 LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQT 317 Query: 57 HPSITQKDKKN 67 HPSITQKDKKN Sbjct: 318 HPSITQKDKKN 328 >gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 309 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ Q HP Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHPRA 308 Query: 61 T 61 Sbjct: 309 R 309 >gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] Length = 290 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++K++ +IY++ HP Sbjct: 232 NITPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHLSNKQLTDIYNRAHPRA 290 >gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR] gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR] Length = 295 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ ++TTQIYT++ R+ E+Y +THP Sbjct: 238 ITPHTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTHLTRGRLREVYSKTHPRA 295 >gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S] gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S] Length = 309 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ Q HP Sbjct: 249 VAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAQAHPRA 308 Query: 61 T 61 Sbjct: 309 R 309 >gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301 >gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 321 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHLLS G DLR++Q +LGH+ ++TTQIYT+V+ R+ ++ Q HP Sbjct: 243 TVSPHTLRHSFATHLLSGGADLRTVQELLGHASIATTQIYTHVDRDRLKALHRQFHPR 300 >gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] Length = 222 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 163 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 220 >gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 311 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FAT LL G D+R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP Sbjct: 251 KITPHKFRHTFATDLLDAGADIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHAR 310 Query: 62 Q 62 + Sbjct: 311 K 311 >gi|316931849|ref|YP_004106831.1| integrase family protein [Rhodopseudomonas palustris DX-1] gi|315599563|gb|ADU42098.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 323 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 323 >gi|91975033|ref|YP_567692.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB5] gi|91681489|gb|ABE37791.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB5] Length = 329 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 271 SATPHALRHSFATHLLTRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 329 >gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 290 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 48/58 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL+NG DLRS+Q +LGH +LSTTQIYT+++ +++ +I+ QTHP Sbjct: 232 KVSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTHLSREKIKDIHQQTHPR 289 >gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505] gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505] Length = 311 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 252 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 309 >gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] Length = 297 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 239 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 297 >gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] Length = 296 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 298 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 38/60 (63%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATHLL NG DLR++Q +LGHS LSTTQ YT V +M E+YD THP Sbjct: 238 EITPHTLRHSFATHLLENGADLRAVQELLGHSDLSTTQRYTFVTKTKMKEVYDLTHPRAK 297 >gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens TA208] gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 296 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQYHPRA 296 >gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] Length = 322 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP + Sbjct: 255 VHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDNAHPRAKR 314 Query: 63 KD 64 Sbjct: 315 DP 316 >gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] Length = 339 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR +Q +LGH+ LSTTQ YT++N + +YDQ HP Sbjct: 280 VSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 295 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] Length = 331 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E+Y THP Sbjct: 272 NVSPHTLRHSFATHLLQGGADVRVVQELLGHASVTTTQIYTMVTPDTLREVYAATHPRAR 331 >gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] Length = 299 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LS TQIYT+V+ +R+ +Y + HP Sbjct: 240 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSATQIYTHVSKERLRSVYMKHHPRA 299 >gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21193] Length = 295 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|307316349|ref|ZP_07595793.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306898189|gb|EFN28931.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 330 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 330 >gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] Length = 302 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/65 (52%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+FATH+L G DLR+IQ +LGH+ LSTTQ YT+V+ R+ME+YD+ HP Sbjct: 238 ISPHTLRHTFATHMLEGGADLRAIQELLGHASLSTTQKYTHVSLDRLMEVYDKAHPKART 297 Query: 63 KDKKN 67 + + Sbjct: 298 PEPEE 302 >gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR] gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR] Length = 302 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RHSFATHLL G DLR++Q +LGH ++STTQIYT+V + + E+Y + HP Sbjct: 245 VSPHIIRHSFATHLLDAGADLRTVQELLGHVKMSTTQIYTHVTREHLKEVYKKAHPRA 302 >gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9] gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30] gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132] gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1] gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus] gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30] gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ST398] gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981] gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus ED133] gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH60] gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS03] gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS00] gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS01] gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA131] gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA177] gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus T0131] gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21189] gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21172] Length = 295 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] Length = 315 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H +RH FATHLL +G DLRS+Q +LGH+ +STTQIYT++ R+ +++++ HP Sbjct: 248 KIYPHLMRHCFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLRDVFEKAHPRAK 307 Query: 62 QKDKKN 67 + +KN Sbjct: 308 RGGQKN 313 >gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL NG DLR +Q +LGHS + TTQIYT++ ++++ E++ + HP Sbjct: 229 NLTPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYTHLTTRKLREVFRKAHPRA 287 >gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str. Houston-1] gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1] Length = 326 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 38/62 (61%), Positives = 50/62 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT+V++K ++EIY + HP Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHVDTKHLLEIYQKAHPRSL 323 Query: 62 QK 63 + Sbjct: 324 KD 325 >gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 301 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR +Q ILGH+ +STTQIYTN+ K ++++Y +THP I Sbjct: 244 VTPHTLRHSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDVYQKTHPRI 301 >gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] Length = 310 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHVLESSQNLRTVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 301 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN++ K ++++Y +THP + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPRL 301 >gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] Length = 296 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296 >gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222] Length = 310 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+V+ K + E+Y++ HP Sbjct: 239 VTPHTLRHSFATHLLENGADLRIVQELLGHSDISTTQIYTHVSHKHLTEVYNKYHPRA 296 >gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] Length = 297 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y + HP Sbjct: 240 ITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYAKFHPRA 297 >gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RH+FATH+L+ G DLR++Q +LGH +STTQ+YT+V +R+ +YD HP Sbjct: 243 LRVSPHTFRHTFATHMLNGGADLRTVQELLGHVNVSTTQVYTHVTKERLRHVYDTAHPRA 302 >gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4] Length = 313 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KD 64 K+ Sbjct: 307 KN 308 >gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] Length = 311 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD HP + Sbjct: 246 VHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGAHPRARK 305 Query: 63 KDKKN 67 + +N Sbjct: 306 RKDEN 310 >gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308 >gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70] gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70] Length = 299 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 243 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQIYTHVTKTRLKDVYKQYHPRA 299 >gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] Length = 299 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H+LRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y++ HP Sbjct: 241 KLTPHSLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNEFHPRA 299 >gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group] Length = 752 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 693 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 751 >gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1] Length = 332 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 36/61 (59%), Positives = 51/61 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ R++E+Y + HP + Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTDRLLEVYQKAHPRAS 323 Query: 62 Q 62 + Sbjct: 324 K 324 >gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] Length = 302 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 46/62 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+FATHLL G DLRS+Q +LGH L+TTQIYT+V+++R+ + Y Q HP Sbjct: 241 ISPHTLRHTFATHLLDGGADLRSVQEMLGHKSLTTTQIYTHVSTQRLKDTYQQAHPHAKV 300 Query: 63 KD 64 +D Sbjct: 301 QD 302 >gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi Nb-255] gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255] Length = 321 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++S+R++++Y HP Sbjct: 263 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDSERLLDVYRTAHPRA 321 >gi|332637865|ref|ZP_08416728.1| site-specific recombinase XerD [Weissella cibaria KACC 11862] Length = 303 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L NG DLR +Q +LGH+ +STTQIYT++++KR+ E+Y ++HP Sbjct: 246 VSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKRLTEVYQKSHPRA 303 >gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] Length = 296 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 296 >gi|15966799|ref|NP_387152.1| site-specific tyrosine recombinase XerC [Sinorhizobium meliloti 1021] gi|307301627|ref|ZP_07581386.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|15076071|emb|CAC47625.1| Probable integrase/recombinase [Sinorhizobium meliloti 1021] gi|306903325|gb|EFN33914.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 330 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 272 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 330 >gi|192288610|ref|YP_001989215.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris TIE-1] gi|192282359|gb|ACE98739.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 323 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 265 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 323 >gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122] gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122] Length = 295 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] Length = 297 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATHLL++G DLR +Q +LGH +STTQIYT+V +R+ ++ + HP Sbjct: 238 IPLSPHVLRHAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVARERLKSLHKKHHPRA 297 >gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH] gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH] Length = 325 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 46/61 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K+ Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKN 295 Query: 65 K 65 K Sbjct: 296 K 296 >gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] Length = 306 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP + Sbjct: 244 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 303 >gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH FATHLL G D+R++Q +LGH+ ++TTQIYT V++ + E+Y HP Sbjct: 248 VPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSNDMLREVYASAHPRA 307 Query: 61 T 61 Sbjct: 308 R 308 >gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] Length = 302 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 240 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591] Length = 302 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 240 VNPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP 105476] gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476] Length = 322 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 37/58 (63%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT+V++ ++EIY + HP Sbjct: 264 TATPHTLRHSFATHLLSRGGDLRTIQELLGHASLSTTQTYTHVDTDHLLEIYQKAHPR 321 >gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49] gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49] Length = 299 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL G DLR+IQ +LGH ++TT+IYT+++ + E+ + HP Sbjct: 240 NVSPHTFRHSFATHLLERGADLRAIQQMLGHESITTTEIYTHIDKSHLTEVIHKFHPR 297 >gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30] gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10] Length = 296 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296 >gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20] gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20] Length = 296 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296 >gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] Length = 329 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H++RH+FATH+L G DLRS+Q +LGH LSTTQ YT+V+ R+ME+YD+THP Sbjct: 271 ISPHSMRHTFATHMLDGGADLRSVQELLGHKSLSTTQKYTHVSLDRLMEVYDKTHPR 327 >gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 301 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297 Query: 63 KDKK 66 + Sbjct: 298 GKNE 301 >gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31] gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31] Length = 308 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 41/61 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FATHLL G DLR IQ++LGH+ ++TTQIYT+V + E+ HP Sbjct: 248 TVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGDHLAEVVKSKHPLGR 307 Query: 62 Q 62 + Sbjct: 308 K 308 >gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71] gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71] Length = 312 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + ++YD +HP + Sbjct: 246 VHPHMLRHSFASHLLESSGDLRAVQELLGHSDISTTQIYTHLDFQHLAKVYDGSHPRARK 305 Query: 63 KDKKN 67 + + Sbjct: 306 QKDDD 310 >gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20] Length = 307 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 248 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 305 >gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 306 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + +IYD HP +K Sbjct: 242 HPHKLRHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRK 301 Query: 64 DKKN 67 + + Sbjct: 302 KQDD 305 >gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32] gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32] Length = 310 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQ+YT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHVLESSQNLRAVQELLGHENISTTQVYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 K+K Sbjct: 307 KNKD 310 >gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus ATCC 19977] gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus] Length = 315 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 256 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVSALREVWAGAHPRAR 315 >gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703] Length = 302 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 240 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|34222987|sp|Q92LK1|XERC_RHIME RecName: Full=Tyrosine recombinase xerC Length = 318 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 318 >gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] Length = 438 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + +ME+Y HP ++ Sbjct: 378 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 437 >gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] Length = 437 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + +ME+Y HP ++ Sbjct: 377 SPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 436 >gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] Length = 309 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + E+YDQ HP + Sbjct: 246 ISPHKLRHSFATHVLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAEVYDQAHPRAKK 305 Query: 63 KDKK 66 K K+ Sbjct: 306 KTKE 309 >gi|260576668|ref|ZP_05844655.1| integrase family protein [Rhodobacter sp. SW2] gi|259021153|gb|EEW24462.1| integrase family protein [Rhodobacter sp. SW2] Length = 307 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP Sbjct: 249 SATPHALRHSFATHLLSAGGDLRAIQELLGHASLSTTQGYTAVDTQRLMEVYDKAHPRA 307 >gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336] gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336] Length = 295 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 45/60 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L N DLR++Q +LGHS LSTTQIYT+++ + + ++YD+ HP +K Sbjct: 236 PHKLRHSFATHMLENSSDLRAVQELLGHSNLSTTQIYTHLDFQHLAQVYDKAHPRAKRKK 295 >gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] Length = 304 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT++ ++ + ++ HP Sbjct: 241 KISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKTEELRDVILSYHPR 298 >gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01] gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01] Length = 313 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 45/64 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 ++ Sbjct: 307 RNDD 310 >gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] Length = 362 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y HP Sbjct: 303 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRA 360 >gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14] gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14] Length = 301 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD+ HP + Sbjct: 240 INPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKR 299 Query: 63 KD 64 Sbjct: 300 NK 301 >gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] Length = 296 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RHSFATHLL NG DLR +Q +LGHS ++TTQIYT+V+ KR++ +Y THP Sbjct: 239 VTPHTMRHSFATHLLENGADLRVVQELLGHSDITTTQIYTHVSQKRLLTVYKNTHPRA 296 >gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 307 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V + E+Y HP Sbjct: 247 EVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHPRAR 306 >gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] Length = 304 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 48/67 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRH+FATHLL+NG DLRS+Q +LGH+ LS+TQIYT++ ++ E Y HP Sbjct: 237 LSIHPHKLRHTFATHLLNNGADLRSVQEMLGHADLSSTQIYTHITKDKLRENYMHLHPRA 296 Query: 61 TQKDKKN 67 ++ K++ Sbjct: 297 HRQTKED 303 >gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308 >gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] Length = 322 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 264 KVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRVAHPRA 322 >gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC BAA-1116] gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116] Length = 313 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 45/64 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRARK 306 Query: 63 KDKK 66 ++ Sbjct: 307 RNDD 310 >gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS LSTTQIYT+++ + + +IYD HP +K Sbjct: 241 HPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDSAHPRARRK 300 Query: 64 DKK 66 + Sbjct: 301 QED 303 >gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] Length = 311 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ R+ E+Y HP Sbjct: 253 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVSPHRLREVYAGAHPRAR 311 >gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] Length = 332 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 46/62 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT V+ R+ME+YD+THP + Sbjct: 271 ASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQVSLDRLMEVYDRTHPRGRK 330 Query: 63 KD 64 K Sbjct: 331 KK 332 >gi|86747397|ref|YP_483893.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris HaA2] gi|86570425|gb|ABD04982.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris HaA2] Length = 351 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT ++++R++E+Y HP Sbjct: 293 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYTGIDTERLLEVYASAHPRA 351 >gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] Length = 304 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHMLESSGDLRAVQELLGHANISTTQIYTHLDFQHLAKVYDAAHPRAKR 300 Query: 63 KDKK 66 + + Sbjct: 301 RKRD 304 >gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 297 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 47/63 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL+NG DLR+IQ +LGHS ++TT+IYT++ ++ I +Q HP Sbjct: 235 ISPHTLRHSFATHLLTNGADLRTIQLLLGHSDIATTEIYTHITDNKVRSILEQFHPRFKM 294 Query: 63 KDK 65 ++K Sbjct: 295 RNK 297 >gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 331 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H+LRHSFATHLL+ G DLRS+Q +LGH RL+TTQ YT V+ + ++ YDQ HP Sbjct: 269 FTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQVSLEHLIRAYDQAHPRS 328 Query: 61 TQK 63 +K Sbjct: 329 GKK 331 >gi|169830786|ref|YP_001716768.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637630|gb|ACA59136.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 317 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FATHLL G DLR++Q +LGH+RLSTTQIYT V++ R++E+Y + HP + Sbjct: 257 PHLLRHCFATHLLEAGADLRTVQELLGHARLSTTQIYTRVSADRLLEVYRRAHPRGRSRK 316 >gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308 >gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] Length = 331 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 43/66 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL+ G DLR++Q +LGH+ LS+TQIYT+V ++ Y + HP Sbjct: 265 LKIYPHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRA 324 Query: 61 TQKDKK 66 Q + Sbjct: 325 KQAKQD 330 >gi|332559009|ref|ZP_08413331.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides WS8N] gi|332276721|gb|EGJ22036.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides WS8N] Length = 306 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHPRA 306 >gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] Length = 323 Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V R+ E+Y +HP Sbjct: 257 VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHPRA 314 >gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565] gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565] Length = 325 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP + Sbjct: 258 VHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKR 317 Query: 63 KD 64 Sbjct: 318 DP 319 >gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V ++R+ I+ + HP Sbjct: 250 PVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRSIHRKFHPRSQ 309 >gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 300 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 43/59 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V + R+ ++ ++ HP Sbjct: 240 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLTQVVNRHHPLAK 298 >gi|332716418|ref|YP_004443884.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] Length = 331 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V +R+ E+ HP Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325 Query: 62 QKDK 65 Q Sbjct: 326 QGKN 329 >gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18] gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18] Length = 292 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR IQ +LGH+ LSTTQ YT V+ R+ME+YDQ HP Sbjct: 232 KVSPHTLRHTFATHLLEGGADLRCIQELLGHASLSTTQKYTQVSIDRLMEVYDQAHPKAR 291 >gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4] gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 295 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +R+ +++ + HP Sbjct: 237 NISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKKLHQEFHPR 294 >gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] Length = 301 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 44/65 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RH+FATHLL+NG DLRS+Q +LGH LS+TQIYT+V+ + + + Y HP Sbjct: 237 IKVAPHMIRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTHVSKEHLRQAYALAHPRA 296 Query: 61 TQKDK 65 + K Sbjct: 297 RKDRK 301 >gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684] gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684] Length = 313 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL NG DLRSIQ +LGH+ +STTQ+YT V S R+ Y +HP Sbjct: 256 VSPHALRHSFATHLLENGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHPRA 313 >gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum ATCC 33209] gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium salmoninarum ATCC 33209] Length = 312 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y HP Sbjct: 253 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYASAHPRA 310 >gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS ATH++ NG DLR++Q+ILGH+ +STTQIYT++ R+ +++ HP + Sbjct: 247 ASPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKR 306 Query: 63 KD 64 ++ Sbjct: 307 RN 308 >gi|146277269|ref|YP_001167428.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17025] gi|145555510|gb|ABP70123.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 306 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRAIQELLGHASLSTTQVYTAVDGARLMEVYARAHPRA 306 >gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum R] gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R] Length = 304 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT++ + + E++ HP Sbjct: 247 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHPRA 304 >gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032] gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032] Length = 304 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT++ + + E++ HP Sbjct: 247 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLREVWRGAHPRA 304 >gi|254717978|ref|ZP_05179789.1| site-specific tyrosine recombinase XerC [Brucella sp. 83/13] gi|265982921|ref|ZP_06095656.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306838931|ref|ZP_07471758.1| tyrosine recombinase XerC [Brucella sp. NF 2653] gi|306842934|ref|ZP_07475568.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|264661513|gb|EEZ31774.1| tyrosine recombinase xerC [Brucella sp. 83/13] gi|306286862|gb|EFM58387.1| tyrosine recombinase XerC [Brucella sp. BO2] gi|306406001|gb|EFM62253.1| tyrosine recombinase XerC [Brucella sp. NF 2653] Length = 315 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKAHPRA 315 >gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 313 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/64 (56%), Positives = 49/64 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T+ HTLRH+FATHLL G DLRS+Q +LGH L+TTQIYT+V++KR++E Y++ HP Sbjct: 250 KTSPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHAQ 309 Query: 62 QKDK 65 + K Sbjct: 310 RSKK 313 >gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365] gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365] Length = 395 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHLL +G DLR+IQ +LGH+ L++TQIYT V+ +M +YD +HP Sbjct: 301 EATPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRAR 360 >gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040] gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040] Length = 317 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ Q HP Sbjct: 252 KVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHQHHPLAA 311 Query: 62 QKDK 65 + D+ Sbjct: 312 KDDE 315 >gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1] Length = 307 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH FATHLLS G D+R +Q +LGH+ ++TTQIYT+V + E+Y HP Sbjct: 247 AVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTHVTVDTLREVYATAHPRA 305 >gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis m4-4] Length = 297 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ E+Y + HP Sbjct: 241 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKEVYSKFHPRA 297 >gi|153008277|ref|YP_001369492.1| site-specific tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] gi|151560165|gb|ABS13663.1| tyrosine recombinase XerC [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHPRA 315 >gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] Length = 296 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHPRA 296 >gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] Length = 315 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATH+L NG DLRS+Q +LGH+ +STT YT+V+ R+M YD+ HP Sbjct: 254 PLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPRGE 313 Query: 62 Q 62 + Sbjct: 314 K 314 >gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016] gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016] Length = 322 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP + Sbjct: 253 ITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARK 312 Query: 63 KDKKN 67 K ++ Sbjct: 313 KSSQH 317 >gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] Length = 305 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD HP Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPRSQ 299 Query: 62 QKD 64 + D Sbjct: 300 KDD 302 >gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] Length = 292 Score = 117 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +RM +++ HP Sbjct: 234 SISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPR 291 >gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] Length = 309 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL NG DLR +Q +LGHS +STTQIYT+++++ M +IY+Q HP Sbjct: 252 ISPHTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTHIHAQHMKDIYNQNHPRA 309 >gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 304 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 47/67 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 238 VKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDSAHPRA 297 Query: 61 TQKDKKN 67 ++ K+ Sbjct: 298 KKRGNKS 304 >gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 298 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 44/60 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL G DLRS+QS+LGH+ LSTTQIYT+V +R+ YD+ HP Sbjct: 239 LKVSPHKLRHSFATHLLDAGADLRSVQSLLGHASLSTTQIYTHVTIERLKTAYDEAHPRA 298 >gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654] gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654] Length = 313 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 37/63 (58%), Positives = 49/63 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+++R+ME+YD+ HP Sbjct: 251 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTQRLMEVYDRAHPRAL 310 Query: 62 QKD 64 K Sbjct: 311 GKS 313 >gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] Length = 299 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 35/63 (55%), Positives = 47/63 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLSEVYDQAHPRAKRKK 295 Query: 65 KKN 67 +K+ Sbjct: 296 QKS 298 >gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. JH642] gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. SMY] gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] Length = 296 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] Length = 302 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + ++ ++ HP Sbjct: 244 NVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMHVDRSHLSDVLNKFHPR 301 >gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC BAA-894] gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARR 298 >gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] Length = 300 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] Length = 305 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHL+ NG DLR +Q +LGHS +STTQIYT+++ + + ++YD HP Sbjct: 240 EISPHKLRHSFATHLIENGVDLRLVQEMLGHSDISTTQIYTHISKEHLKDVYDLYHPRSQ 299 Query: 62 QKD 64 + D Sbjct: 300 KDD 302 >gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus JKD6159] Length = 295 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|239833042|ref|ZP_04681371.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] gi|239825309|gb|EEQ96877.1| tyrosine recombinase XerC [Ochrobactrum intermedium LMG 3301] Length = 315 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+ HP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTERLLEVYDKAHPRA 315 >gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] Length = 300 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++ R+ E+Y Q HP Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHPRA 300 >gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] Length = 300 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1] gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1] Length = 299 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 45/66 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + + ++YD HP Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 61 TQKDKK 66 ++ K Sbjct: 294 KKQQDK 299 >gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + EIY HP Sbjct: 275 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHPRA 332 >gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis z3032] gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032] Length = 306 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 244 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRARR 303 >gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032] gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 296 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHPRA 296 >gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] Length = 319 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + + E+Y HP Sbjct: 260 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRA 317 >gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. natto BEST195] Length = 296 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] Length = 315 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKA 311 >gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] Length = 307 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS+ATHLL NG DLR++Q +LGH+ LSTTQ+YT+V+ R+ E + Q HP Sbjct: 251 TPHKLRHSYATHLLDNGADLRAVQELLGHANLSTTQVYTHVSIARLKEAHKQAHPRA 307 >gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] Length = 313 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR +Q +LGH+ +STTQIYT+++ + + ++YD+ HP Sbjct: 241 PVHPHMLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAG 300 Query: 62 QKD 64 +K Sbjct: 301 RKK 303 >gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB] gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB] Length = 301 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297 Query: 63 KDKK 66 + Sbjct: 298 GKNE 301 >gi|254470878|ref|ZP_05084281.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] gi|211960020|gb|EEA95217.1| tyrosine site-specific integrase/recombinase protein [Pseudovibrio sp. JE062] Length = 319 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 39/58 (67%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT VNS ++++ YD+ HP Sbjct: 261 TATPHALRHSFATHLLSEGGDLRSIQELLGHASLSTTQIYTEVNSAQLLDAYDKAHPR 318 >gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 311 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311 >gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] Length = 301 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290 Query: 61 TQKD 64 K Sbjct: 291 KAKS 294 >gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11] gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46] Length = 295 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q HP Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885] gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT+RHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++ ++E Y + HP + Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLKAHPRLA 311 Query: 62 Q 62 Q Sbjct: 312 Q 312 >gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] Length = 296 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 46/65 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 229 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 288 Query: 63 KDKKN 67 + K + Sbjct: 289 RSKDD 293 >gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644] gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644] Length = 442 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H+LRHSFATHLL G DLRS+Q +LGH RL+TTQIYT V +R++E Y + HP Sbjct: 385 ATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQVTRERLLETYRKAHPRA 442 >gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + HTLRH+FATH+L NG D+RS+Q +LGH+ LSTTQ YT++ +M +YD+ HP + + Sbjct: 270 SPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTHITLDHLMRVYDKAHPRSSVR 329 Query: 64 DK 65 K Sbjct: 330 GK 331 >gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] Length = 300 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VNPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] Length = 305 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKQLHAKHHPR 297 >gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] Length = 302 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT+RHSFATHLL +G DLRS+Q +LGH+ LSTTQIYT+V+++ + +Y + HP Sbjct: 244 NVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSNEHVTNVYKKNHPRA 302 >gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM] Length = 303 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E + HP Sbjct: 241 NISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHPR 298 >gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] Length = 319 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2] gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2] Length = 296 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM E+Y Q P Sbjct: 238 NVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTEVYKQHFPRA 296 >gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] Length = 309 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ E++ + HP Sbjct: 251 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQERLKELHTRFHPR 308 >gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] Length = 313 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L G DLRS+Q +LGH RL+TTQ YT+++ + +M++YDQ HP + Sbjct: 248 VHPHMLRHSFATHMLEAGADLRSVQELLGHERLTTTQRYTHLDMQHLMQVYDQAHPRAKE 307 Query: 63 KDK 65 K Sbjct: 308 DGK 310 >gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] Length = 311 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIYD HP Sbjct: 253 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYDNAHPRA 311 >gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] Length = 311 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 249 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 308 >gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR +Q++LGH+ +STTQ+YT+V ++R+ E+ + HP + Sbjct: 242 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLSKR 301 Query: 63 K 63 + Sbjct: 302 R 302 >gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 326 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP Sbjct: 262 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAR 321 Query: 62 QKD 64 +K Sbjct: 322 RKP 324 >gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868] gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868] gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD] Length = 303 Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR IQ +LGHS ++TT+IYT+++++ + E + HP Sbjct: 241 NISPHTFRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTHLDNEDLRETIMKYHPR 298 >gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium aurimucosum ATCC 700975] gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R++Q +LGHS ++TTQIYT+V + + E++ HP Sbjct: 234 KISPHTLRHSFATHLLEGGADVRTVQELLGHSSVTTTQIYTHVTADSLREVWRTAHPRA 292 >gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides KD131] gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 306 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHPRA 306 >gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334] gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang] gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334] gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang] gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W] gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II] Length = 293 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292 >gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36] gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36] Length = 315 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKA 311 >gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] Length = 299 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 45/66 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + + ++YD HP Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 61 TQKDKK 66 ++ K Sbjct: 294 KKQQDK 299 >gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] Length = 290 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y HP Sbjct: 230 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYATAHPRAR 289 >gi|39933259|ref|NP_945535.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris CGA009] gi|39652884|emb|CAE25626.1| putative site-specific recombinase, INTEGRASE/RECOMBINASE RIPX (xerC) [Rhodopseudomonas palustris CGA009] Length = 371 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+Y+ HP Sbjct: 313 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAHPRA 371 >gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1] gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1] Length = 308 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V KR+ E+ + HP Sbjct: 249 KISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKRLQELVQKHHPLA 307 >gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] Length = 304 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYTAVDTARLMEVYDRTHPKA 304 >gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] Length = 310 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHL+ G DLR++Q +LGH+ L+TTQIYT+VN+ R+ +YD+ HP Sbjct: 237 PLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHPR 294 >gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] Length = 303 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLANVYDAAHPRAKR 300 >gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] Length = 319 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] Length = 300 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 319 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 46/62 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT+++ R+M++YDQ HP + Sbjct: 257 AHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLDLARLMQVYDQAHPRSDE 316 Query: 63 KD 64 Sbjct: 317 SK 318 >gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA] gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter sulfurreducens PCA] gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400] Length = 294 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V R+ME+YD+ HP Sbjct: 234 KISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKAR 293 >gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides 2.4.1] gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17029] gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1] gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 306 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V+ R+ME+Y + HP Sbjct: 248 TATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYAKAHPRA 306 >gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] Length = 310 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRH FATH+LS G D+R +Q +LGH+ ++TTQIYT+V++ + E+Y +HP Sbjct: 250 SVSPHTLRHCFATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALREVYASSHPRA 308 >gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 300 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 250 SLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHPRA 308 >gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1] gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1] Length = 311 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ + Y Q HP Sbjct: 256 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 311 >gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22] gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22] Length = 300 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7] gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7] Length = 304 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HT+RHSFATHLL+ G D+R++Q +LGH LSTTQIYT+++ + E+Y + HP Sbjct: 244 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPRNI 303 Query: 62 Q 62 + Sbjct: 304 E 304 >gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7] gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7] Length = 299 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 45/66 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH LSTTQIYT+++ + + ++YD HP Sbjct: 234 MRVHPHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 61 TQKDKK 66 ++ K Sbjct: 294 KKQQDK 299 >gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] Length = 300 Score = 116 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 300 >gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ EI+ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEIHAKHHPR 297 >gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] Length = 543 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 46/67 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LSN GDLR++Q +LGHS L+TTQIYT+V+ + ++YDQ HP Sbjct: 477 VDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTHVDFDHLAQVYDQAHPRA 536 Query: 61 TQKDKKN 67 KN Sbjct: 537 AASKIKN 543 >gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens FZB42] gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQYHPRA 296 >gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC BAA-895] gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] Length = 302 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HT+RHSFATHLL+ G D+R++Q +LGH LSTTQIYT+++ + E+Y + HP Sbjct: 242 KIHPHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPRNI 301 Query: 62 Q 62 + Sbjct: 302 E 302 >gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] Length = 298 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V +RM E++ Q HP Sbjct: 240 NLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAKQRMQELHAQHHPR 297 >gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2] gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2] Length = 302 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 41/63 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHSFATHLL NG DLR +Q +LGH+ LSTTQ+Y +V +R+ + Y HP Sbjct: 240 VHVHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHAHPRA 299 Query: 61 TQK 63 +K Sbjct: 300 QEK 302 >gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] Length = 316 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V + R++EIYD+ HP Sbjct: 258 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVETSRLLEIYDRAHPRA 316 >gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP + Sbjct: 258 VHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTHLDFQHLAKVYDSAHPRAKR 317 Query: 63 KD 64 Sbjct: 318 DP 319 >gi|944942|gb|AAA74432.1| RipX [Bacillus subtilis] Length = 163 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 107 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 163 >gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] Length = 316 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + ++YDQ HP + Sbjct: 247 ITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARK 306 Query: 63 KDKKN 67 K ++ Sbjct: 307 KSSQH 311 >gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] Length = 298 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 50/64 (78%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S T H LRHSFATHLL+ G DLR+IQ +LGH+ L+TT+ YT+++ ++ E+YD++HP Sbjct: 234 ISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRA 293 Query: 61 TQKD 64 ++D Sbjct: 294 GRRD 297 >gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP Sbjct: 263 NIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHPRA 321 >gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V + E+Y +HP Sbjct: 205 ISPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTKVTVDHLREVYATSHPRA 262 >gi|319780736|ref|YP_004140212.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166624|gb|ADV10162.1| tyrosine recombinase XerC [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 312 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+Q HP Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYEQAHPRA 312 >gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] Length = 315 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y +HP Sbjct: 255 EVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYASSHPRA 313 >gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] Length = 296 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYHKFHPRA 296 >gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51] gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHSFATHLL +G DLRS+Q +LGH+ ++TTQIYT+++ +R++E++ + HP Sbjct: 263 NIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHPRA 321 >gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++ R+ E+Y Q HP Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHPRA 300 >gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] Length = 311 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDQSRLLEVYDRAHPRA 311 >gi|332881238|ref|ZP_08448888.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680614|gb|EGJ53561.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 317 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G +LR+IQ++LGH +STT+IYT+++ R+ + HP Sbjct: 252 KISPHTFRHSFATHLLEGGANLRAIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNI 311 Query: 62 QKD 64 + D Sbjct: 312 RDD 314 >gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2] gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580] gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYRQYHPRA 296 >gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125] Length = 299 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V RM ++Y HP Sbjct: 241 PLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMRDVYAHFHPRA 299 >gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] Length = 299 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL +G DLR++Q++LGH+ +STTQIYT+V+ R++ +Y++ HP Sbjct: 241 EISPHKLRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTHVSRARLVALYEKHHPRA 299 >gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 300 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 327 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH FATHLL G D+R++Q +LGH+ ++TTQIYT V + + E+Y HP Sbjct: 257 VPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTNDMIREVYASAHPRA 316 Query: 61 T 61 Sbjct: 317 R 317 >gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] Length = 302 Score = 116 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT+RH+FATH+L+NG DLRS+Q +LGH LSTTQ+YT+V +R+ +Y +THP Sbjct: 244 KVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 299 Score = 116 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H++RHSFATHLL+ G DLR +Q +LGH +STTQIYT++ ++ E+Y+ HP Sbjct: 242 ISPHSIRHSFATHLLNAGADLRVVQELLGHVNISTTQIYTHITRDQLKEVYNGAHPRA 299 >gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] Length = 299 Score = 116 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + + HP Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREYLKGVIIEHHPR 298 >gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 319 Score = 116 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 37/64 (57%), Positives = 48/64 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++ +YD HP Sbjct: 254 SATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVDADRLLSVYDNAHPRAR 313 Query: 62 QKDK 65 +K + Sbjct: 314 RKAE 317 >gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c] gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c] Length = 294 Score = 116 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 232 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 291 Query: 63 KDK 65 K + Sbjct: 292 KAR 294 >gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] Length = 302 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 300 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 300 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888); contains similarity to Pfam family PF00589 ('Phage' integrase family), score=227.1, E=2.5e-64, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990784|gb|AEF09767.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 300 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 300 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 297 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL NG DLRS+Q +LGH+ LSTTQIYT+V RM ++Y + HP Sbjct: 241 SPHTLRHSFATHLLENGADLRSVQEMLGHADLSTTQIYTHVTKTRMKDVYSRYHPRA 297 >gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] Length = 322 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT V+S R++++YD+ HP Sbjct: 264 TATPHALRHSFATHLLSGGGDLRTIQELLGHASLSTTQIYTGVDSARLLDVYDRAHPRA 322 >gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 300 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] Length = 311 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E+Y HP Sbjct: 252 ISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTLVTVDTLREVYAMAHPRA 309 >gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431] Length = 282 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 221 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 280 >gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T] gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T] Length = 309 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 252 ISPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPRA 309 >gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 294 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL G DLR+IQ +LGH+ LSTTQ YT+V R+ME+YD+ HP Sbjct: 234 KISPHTLRHTFATHLLEGGADLRAIQELLGHASLSTTQKYTHVGIDRLMEVYDKAHPKAR 293 Query: 62 Q 62 + Sbjct: 294 K 294 >gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] Length = 331 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS LSTTQIYT+++ + + +IYD HP +K Sbjct: 268 HPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQIYTSLDFQHLAQIYDAAHPRARRK 327 Query: 64 DKKN 67 ++ Sbjct: 328 KEEE 331 >gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733] gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12] gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733] gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12] gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] Length = 295 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 295 >gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] Length = 306 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y + HP Sbjct: 248 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQTYTAVDTTHLMDVYMRAHPKA 306 >gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1] gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1] Length = 308 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 249 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVGALREVWAGAHPRAR 308 >gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15] gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980] gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15] gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980] Length = 295 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 295 >gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] Length = 284 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 226 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 284 >gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 242 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 300 >gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 319 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+M++YD HP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYTAVDTARLMKVYDAAHPRAH 305 Query: 62 QK 63 + Sbjct: 306 PR 307 >gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 294 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFA+HLL G D+R +Q +LGH+ ++TTQIYT+++ R+++ + + HP Sbjct: 236 NITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPR 293 >gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] Length = 317 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR IQ++LGH +STT+IYT+++ R+ + HP Sbjct: 252 TISPHTFRHSFATHLLEGGANLRVIQAMLGHESISTTEIYTHIDRSRLRREIMEHHPRNI 311 Query: 62 QKD 64 + D Sbjct: 312 RDD 314 >gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL] gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL] Length = 291 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291 >gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638] gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDSAHPRAKR 298 >gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus] Length = 209 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHL+ G DLR++Q +LGH+ L+TTQIYT+VN+ R+ +YD+ HP Sbjct: 136 PLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTHVNAARLRSVYDEFHPR 193 >gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] Length = 302 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] Length = 304 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 238 IKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDNAHPRA 297 Query: 61 TQKDKK 66 ++ K Sbjct: 298 KKRGDK 303 >gi|311234212|gb|ADP87066.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 490 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHSFATHLL G DLRS+Q +LGH+RL+TTQ YT++ ++E+YD+ HP + Sbjct: 380 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHPRAS 439 >gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42] gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 311 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311 >gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ NG DLR++Q +LGH+ +STTQIYT+++ R+ E+Y Q HP Sbjct: 244 TPHTLRHSFATHLVENGADLRAVQEMLGHADISTTQIYTHISKTRLSEVYKQFHPRA 300 >gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] Length = 254 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ +++ HP Sbjct: 196 AISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVARQRLQQLHAAHHPR 253 >gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae NTUH-K2044] gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 42/62 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFAT LL+ G D+R +Q +LGHS ++TTQ YT+++ + + Y ++HP T Sbjct: 238 EVTPHIFRHSFATELLNQGVDIRFVQELLGHSSIATTQFYTHISKNTLKDAYMKSHPFAT 297 Query: 62 QK 63 +K Sbjct: 298 KK 299 >gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] Length = 327 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 45/62 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G DLRS+Q +LGH RL+TTQ YT V+ +R+M +YD+ HP Sbjct: 266 PVSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDEAHPRAQ 325 Query: 62 QK 63 +K Sbjct: 326 KK 327 >gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis 2002] gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis 2002] Length = 291 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291 >gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] Length = 316 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q ++GH+ ++TTQIYT V + + E++ HP Sbjct: 258 VSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHPRAK 316 >gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato Max13] gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato K40] gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655] Length = 295 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] Length = 325 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFATHLL +G DLR++Q++LGH+ ++TTQIYT+V+++R+ +I+ Q HP Sbjct: 267 EVGPHVLRHSFATHLLEHGADLRAVQAMLGHADIATTQIYTHVDAQRLKKIHRQFHPR 324 >gi|23502766|ref|NP_698893.1| site-specific tyrosine recombinase XerC [Brucella suis 1330] gi|62290770|ref|YP_222563.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 1 str. 9-941] gi|82700682|ref|YP_415256.1| site-specific tyrosine recombinase XerC [Brucella melitensis biovar Abortus 2308] gi|161619834|ref|YP_001593721.1| site-specific tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189024985|ref|YP_001935753.1| site-specific tyrosine recombinase XerC [Brucella abortus S19] gi|225853354|ref|YP_002733587.1| site-specific tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|254690060|ref|ZP_05153314.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 6 str. 870] gi|254694548|ref|ZP_05156376.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 3 str. Tulya] gi|254696173|ref|ZP_05158001.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 2 str. 86/8/59] gi|254700560|ref|ZP_05162388.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 5 str. 513] gi|254704930|ref|ZP_05166758.1| site-specific tyrosine recombinase XerC [Brucella suis bv. 3 str. 686] gi|254707556|ref|ZP_05169384.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M163/99/10] gi|254708907|ref|ZP_05170718.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis B2/94] gi|254715980|ref|ZP_05177791.1| site-specific tyrosine recombinase XerC [Brucella ceti M13/05/1] gi|254731091|ref|ZP_05189669.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 4 str. 292] gi|256030433|ref|ZP_05444047.1| site-specific tyrosine recombinase XerC [Brucella pinnipedialis M292/94/1] gi|256112250|ref|ZP_05453171.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 3 str. Ether] gi|256158417|ref|ZP_05456315.1| site-specific tyrosine recombinase XerC [Brucella ceti M490/95/1] gi|256253837|ref|ZP_05459373.1| site-specific tyrosine recombinase XerC [Brucella ceti B1/94] gi|256258313|ref|ZP_05463849.1| site-specific tyrosine recombinase XerC [Brucella abortus bv. 9 str. C68] gi|256263161|ref|ZP_05465693.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|256370318|ref|YP_003107829.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169343|ref|ZP_05756154.1| site-specific tyrosine recombinase XerC [Brucella sp. F5/99] gi|260546037|ref|ZP_05821777.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260567595|ref|ZP_05838065.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260755595|ref|ZP_05867943.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260758821|ref|ZP_05871169.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260760545|ref|ZP_05872888.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260884621|ref|ZP_05896235.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|261214868|ref|ZP_05929149.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|261217745|ref|ZP_05932026.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261220972|ref|ZP_05935253.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|261315040|ref|ZP_05954237.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261316403|ref|ZP_05955600.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261751064|ref|ZP_05994773.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261755626|ref|ZP_05999335.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|261758859|ref|ZP_06002568.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|265987475|ref|ZP_06100032.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|265993679|ref|ZP_06106236.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|265996931|ref|ZP_06109488.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|294851157|ref|ZP_06791830.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297247158|ref|ZP_06930876.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306843367|ref|ZP_07475968.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|34222806|sp|Q7ZAN7|XERC_BRUSU RecName: Full=Tyrosine recombinase xerC gi|23348785|gb|AAN30808.1| integrase/recombinase XerC [Brucella suis 1330] gi|62196902|gb|AAX75202.1| XerC, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616783|emb|CAJ11872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|161336645|gb|ABX62950.1| tyrosine recombinase XerC [Brucella canis ATCC 23365] gi|189020557|gb|ACD73279.1| Phage integrase [Brucella abortus S19] gi|225641719|gb|ACO01633.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|256000481|gb|ACU48880.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260096144|gb|EEW80020.1| tyrosine recombinase xerC [Brucella abortus NCTC 8038] gi|260157113|gb|EEW92193.1| tyrosine recombinase xerC [Brucella suis bv. 4 str. 40] gi|260669139|gb|EEX56079.1| tyrosine recombinase xerC [Brucella abortus bv. 4 str. 292] gi|260670977|gb|EEX57798.1| tyrosine recombinase xerC [Brucella abortus bv. 2 str. 86/8/59] gi|260675703|gb|EEX62524.1| tyrosine recombinase xerC [Brucella abortus bv. 6 str. 870] gi|260874149|gb|EEX81218.1| tyrosine recombinase xerC [Brucella abortus bv. 9 str. C68] gi|260916475|gb|EEX83336.1| tyrosine recombinase xerC [Brucella abortus bv. 3 str. Tulya] gi|260919556|gb|EEX86209.1| tyrosine recombinase xerC [Brucella ceti B1/94] gi|260922834|gb|EEX89402.1| tyrosine recombinase xerC [Brucella ceti M13/05/1] gi|261295626|gb|EEX99122.1| tyrosine recombinase xerC [Brucella pinnipedialis B2/94] gi|261304066|gb|EEY07563.1| tyrosine recombinase xerC [Brucella pinnipedialis M163/99/10] gi|261738843|gb|EEY26839.1| tyrosine recombinase xerC [Brucella sp. F5/99] gi|261740817|gb|EEY28743.1| tyrosine recombinase xerC [Brucella suis bv. 5 str. 513] gi|261745379|gb|EEY33305.1| tyrosine recombinase xerC [Brucella suis bv. 3 str. 686] gi|262551399|gb|EEZ07389.1| tyrosine recombinase xerC [Brucella ceti M490/95/1] gi|262764660|gb|EEZ10581.1| tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] gi|263093066|gb|EEZ17216.1| tyrosine recombinase xerC [Brucella melitensis bv. 2 str. 63/9] gi|264659672|gb|EEZ29933.1| tyrosine recombinase xerC [Brucella pinnipedialis M292/94/1] gi|294819746|gb|EFG36745.1| tyrosine recombinase XerC [Brucella sp. NVSL 07-0026] gi|297174327|gb|EFH33674.1| tyrosine recombinase XerC [Brucella abortus bv. 5 str. B3196] gi|306276058|gb|EFM57758.1| tyrosine recombinase XerC [Brucella sp. BO1] gi|326409918|gb|ADZ66983.1| Phage integrase [Brucella melitensis M28] gi|326539631|gb|ADZ87846.1| tyrosine recombinase XerC [Brucella melitensis M5-90] Length = 315 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 315 >gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct] Length = 304 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 Query: 64 DKKN 67 + Sbjct: 295 GNAD 298 >gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens str. C58] gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 331 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V +R+ E+ HP Sbjct: 266 AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQTHHPLAK 325 Query: 62 QKDK 65 Q Sbjct: 326 QGKN 329 >gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355] Length = 301 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297 Query: 63 KDKK 66 + Sbjct: 298 GKSE 301 >gi|256059893|ref|ZP_05450079.1| site-specific tyrosine recombinase XerC [Brucella neotomae 5K33] Length = 309 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 251 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 309 >gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1] gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1] Length = 341 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/61 (54%), Positives = 47/61 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ R+ ++YD+ HP +Q+ Sbjct: 278 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFDRLTQVYDKAHPRASQEK 337 Query: 65 K 65 K Sbjct: 338 K 338 >gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 215 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 274 Query: 63 KDK 65 K + Sbjct: 275 KAR 277 >gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] Length = 298 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V R+ ++Y Q HP Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA 298 >gi|46580471|ref|YP_011279.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449890|gb|AAS96539.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 474 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHSFATHLL G DLRS+Q +LGH+RL+TTQ YT++ ++E+YD+ HP + Sbjct: 364 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHPRAS 423 >gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ Q HP Sbjct: 249 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTALREVWAQAHPRAR 307 >gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus HTA426] gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 298 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V R+ ++Y Q HP Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA 298 >gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa Temecula1] gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23] gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1] gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23] gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp. fastidiosa GB514] Length = 294 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 232 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 291 Query: 63 KDK 65 K + Sbjct: 292 KAR 294 >gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163] gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 302 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 242 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRRIYLQAHPRA 300 >gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] Length = 299 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + +I HP Sbjct: 241 TVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPR 298 >gi|302865900|ref|YP_003834537.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|315502445|ref|YP_004081332.1| integrase family protein [Micromonospora sp. L5] gi|302568759|gb|ADL44961.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|315409064|gb|ADU07181.1| integrase family protein [Micromonospora sp. L5] Length = 352 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATHLL G DLR++Q +LGHS L++TQIYT+V+ +R+ Y Q HP Sbjct: 295 VTPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHPRA 352 >gi|218513302|ref|ZP_03510142.1| site-specific tyrosine recombinase XerC [Rhizobium etli 8C-3] Length = 210 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 152 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 210 >gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 300 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] Length = 297 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN + E Y HP Sbjct: 238 NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHPRAK 297 >gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103] gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103] Length = 301 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 238 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 297 Query: 63 KDKK 66 + Sbjct: 298 GKSE 301 >gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] Length = 315 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FAT LL+NG D+R +Q +LGHS +STTQ+YT+V+ + ++Y THP Sbjct: 255 EVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTHVSKALLKDVYMNTHPLAR 314 Query: 62 Q 62 + Sbjct: 315 E 315 >gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] Length = 307 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] Length = 296 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 42/62 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL DLR++Q +LGH+ LSTTQIYT+++ + + +YD HP Sbjct: 235 KVHPHKLRHSFATHLLEASKDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDTAHPRAK 294 Query: 62 QK 63 +K Sbjct: 295 KK 296 >gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] Length = 297 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATH+L+ G DLR IQ ILGHS +STTQIYT+VN + E Y HP Sbjct: 238 NLHPHTLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTHVNRTHIREEYLSAHPRAK 297 >gi|163843939|ref|YP_001628343.1| site-specific tyrosine recombinase XerC [Brucella suis ATCC 23445] gi|163674662|gb|ABY38773.1| tyrosine recombinase XerC [Brucella suis ATCC 23445] Length = 315 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 315 >gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] Length = 295 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS L+TTQIYT+++ K + ++YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASADLRAVQELLGHSNLATTQIYTHLDFKHLTDVYDQAHPRAKRK 294 >gi|254713666|ref|ZP_05175477.1| site-specific tyrosine recombinase XerC [Brucella ceti M644/93/1] gi|261321407|ref|ZP_05960604.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261323863|ref|ZP_05963060.1| tyrosine recombinase xerC [Brucella neotomae 5K33] gi|261294097|gb|EEX97593.1| tyrosine recombinase xerC [Brucella ceti M644/93/1] gi|261299843|gb|EEY03340.1| tyrosine recombinase xerC [Brucella neotomae 5K33] Length = 308 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 250 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 308 >gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica CNB-440] gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440] Length = 325 Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 265 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRA 323 >gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN] gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae Br4923] gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae] gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae] gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 316 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q ++GH+ ++TTQIYT V + + E++ HP Sbjct: 258 VSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAHPRAK 316 >gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|296532590|ref|ZP_06895295.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] gi|296267081|gb|EFH13001.1| tyrosine recombinase XerC [Roseomonas cervicalis ATCC 49957] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ G DLRSIQ +LGH+ LSTTQ YT+V+S R++E + + HP Sbjct: 248 SATPHALRHSFATHLLTAGADLRSIQELLGHASLSTTQRYTSVDSARLLETWQKAHPRAR 307 >gi|148252009|ref|YP_001236594.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. BTAi1] gi|146404182|gb|ABQ32688.1| tyrosine recombinase XerC subunit [Bradyrhizobium sp. BTAi1] Length = 324 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y HP Sbjct: 266 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHPR 323 >gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] Length = 319 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1] gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410] gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO] gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68] gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6] gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162] gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410] gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68] gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6] gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162] Length = 295 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 237 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 295 >gi|225628115|ref|ZP_03786150.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237816277|ref|ZP_04595270.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] gi|225616940|gb|EEH13987.1| tyrosine recombinase XerC [Brucella ceti str. Cudo] gi|237788344|gb|EEP62559.1| tyrosine recombinase XerC [Brucella abortus str. 2308 A] Length = 317 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 259 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 317 >gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 336 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+NG DLRS+ +LGHS LSTT+IYT+++ +R+ ++Y Q HP Sbjct: 280 SPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTHISFERLKQVYQQAHPKA 336 >gi|17986431|ref|NP_539065.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. 16M] gi|256045523|ref|ZP_05448406.1| site-specific tyrosine recombinase XerC [Brucella melitensis bv. 1 str. Rev.1] gi|260562833|ref|ZP_05833319.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|265991947|ref|ZP_06104504.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] gi|34222942|sp|Q8YJD9|XERC_BRUME RecName: Full=Tyrosine recombinase xerC gi|17982026|gb|AAL51329.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260152849|gb|EEW87941.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. 16M] gi|263003013|gb|EEZ15306.1| tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] Length = 315 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGVDTQRLLEVYDKTHPRA 315 >gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 242 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 301 Query: 62 QKDK 65 ++++ Sbjct: 302 KENE 305 >gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13] Length = 302 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATH+L+ G DLR +Q +LGH+ LS+TQIYT+V + + + Y+Q HP Sbjct: 243 LHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYTHVTKEHLQKTYNQFHPRA 302 >gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H+LRHSFATHLL G DLRS+Q +LGH +STTQIYT+V + +I+ + HP Sbjct: 240 TITPHSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVVRDHLKKIHSKYHPR 297 >gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510] gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510] Length = 355 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL +G DLRS+Q +LGH+ ++TTQIYT+V ++R+ ++ HP Sbjct: 287 KVSPHVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVVTERLRKVMHDHHPLAR 346 Query: 62 QK 63 ++ Sbjct: 347 RR 348 >gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] Length = 319 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH FATHLL G D+R +Q +LGH+ ++TT+IYT V+ + ++E+Y HP Sbjct: 258 PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] Length = 304 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTSRLMEVYRKAHPK 303 >gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] Length = 300 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 49/63 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRA 296 Query: 61 TQK 63 +K Sbjct: 297 RKK 299 >gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] Length = 304 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 242 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 301 >gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium] Length = 321 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+FATHLL G DLRSIQ +LGH+ L+TTQ YT+++ + +IYD HP Sbjct: 255 KVTPHALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTHLDLANLTKIYDAAHPRAR 314 Query: 62 QKD 64 ++ Sbjct: 315 RQP 317 >gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] Length = 300 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 239 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298 >gi|115522315|ref|YP_779226.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisA53] gi|115516262|gb|ABJ04246.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisA53] Length = 342 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R++E+Y HP Sbjct: 284 SATPHALRHSFATHLLSRGGELRAIQELLGHASLSTTQIYTGIDSERLLEVYATAHPRA 342 >gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 301 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL NG DLRS+Q +LGH RLSTTQIYT+V+ +++ ++ + HP Sbjct: 243 AISPHTLRHTFATHLLDNGADLRSVQELLGHVRLSTTQIYTHVSVEKLKGVHKKYHPR 300 >gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] Length = 295 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H+LRH+ ATHLL G DLR++Q LGHS L TTQIYT+V+ +R+ +IY+ HP Sbjct: 238 ITPHSLRHTAATHLLEGGADLRAVQEFLGHSSLQTTQIYTHVSGERLKKIYNNAHPRA 295 >gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ I+ Q HP Sbjct: 247 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHPR 305 >gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD+ HP Sbjct: 249 TATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYTAVDTARLMEVYDKAHPRA 307 >gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] Length = 302 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT +L+NG DLRS+Q +LGH LSTTQIYT+V +R+ + Y++ P Sbjct: 240 NVHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNK 299 Query: 62 QKD 64 KD Sbjct: 300 GKD 302 >gi|150398130|ref|YP_001328597.1| site-specific tyrosine recombinase XerC [Sinorhizobium medicae WSM419] gi|150029645|gb|ABR61762.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 313 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 313 >gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 327 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/61 (59%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ+YT V+ R++ +YDQ HP Sbjct: 266 TATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYTEVDRDRLLSVYDQAHPRTA 325 Query: 62 Q 62 + Sbjct: 326 R 326 >gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 328 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V + ++Y HP Sbjct: 267 EISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHPRAR 326 Query: 62 Q 62 + Sbjct: 327 R 327 >gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] Length = 304 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RH+FATHLL G DLR++Q +LGHS +STTQIYT+++ + E++ HP Sbjct: 247 ISPHTFRHTFATHLLEGGADLRAVQEMLGHSSISTTQIYTHIDRSFVKEVHKTFHPR 303 >gi|90421704|ref|YP_530074.1| site-specific tyrosine recombinase XerC [Rhodopseudomonas palustris BisB18] gi|90103718|gb|ABD85755.1| tyrosine recombinase XerC subunit [Rhodopseudomonas palustris BisB18] Length = 324 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GG+LR+IQ +LGH+ LSTTQIYT ++S+R+ E+Y HP Sbjct: 266 SATPHALRHSFATHLLSRGGELRAIQELLGHTSLSTTQIYTGIDSERLFEVYKTAHPRA 324 >gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RH+FAT +L++G D+R +Q +LGHS +STTQ YT+V +R+ ++Y Q P + Sbjct: 246 VSPHAFRHTFATGMLNSGADIRIVQELLGHSNISTTQRYTHVTLERLKKVYSQAFPHSGK 305 Query: 63 KD 64 KD Sbjct: 306 KD 307 >gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] Length = 300 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 235 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 294 Query: 62 QKDK 65 ++++ Sbjct: 295 KENE 298 >gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium diphtheriae NCTC 13129] gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae] Length = 311 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQIYT+V + + ++ ++HP Sbjct: 253 ISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLRFVWSRSHPRA 310 >gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 295 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/57 (63%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT+V RM ++Y Q HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHVTKTRMKDVYAQYHPRA 295 >gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G LR++Q +LGH+ L+ TQIYT+V+ R+ +Y Q HP Sbjct: 268 LEAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQIYTHVSRARLWAVYRQAHPRA 327 Query: 61 TQ 62 + Sbjct: 328 RR 329 >gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] Length = 297 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATH+L+ G DLR++Q +LGHSRLS+TQ+YT+V R+ ++Y HP Sbjct: 240 ISPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLRDVYRSAHPRA 297 >gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] Length = 356 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL +G DLR++Q +LGH+ ++TTQIYT+V++ R+ I+ + HP Sbjct: 298 EISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTHVDTNRLKAIHRKFHPR 355 >gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367] gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 47/58 (81%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATH+L NG DLR +Q +LGH+ ++TTQIYT+++ KR++++YDQ HP Sbjct: 241 VTPHTLRHSFATHILENGADLRVVQELLGHADITTTQIYTHISKKRLVKVYDQYHPRA 298 >gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V M E++ Q HP Sbjct: 249 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVTAMREVWAQAHPRAR 307 >gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 314 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 258 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL NG +LR+IQ +LGH+ ++TT+IYT+V + + HP Sbjct: 247 TVSPHTFRHSFATHLLENGANLRAIQQLLGHASITTTEIYTHVGISHLRQEIMNFHPRNK 306 Query: 62 Q 62 + Sbjct: 307 K 307 >gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit 7] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297 >gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 304 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR++Q +LGH+ L +TQIYT+ +R++++Y HP Sbjct: 246 KISPHVLRHTFATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRERLLQVYLHAHPRA 304 >gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b] gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b] Length = 302 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLASVYDSAHPRAKR 299 >gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] Length = 307 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ E+ + HP Sbjct: 247 KISPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVESAHPLAK 306 Query: 62 Q 62 + Sbjct: 307 K 307 >gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297 >gi|146337558|ref|YP_001202606.1| site-specific tyrosine recombinase XerC [Bradyrhizobium sp. ORS278] gi|146190364|emb|CAL74360.1| Tyrosine recombinase (integrase/recombinase) [Bradyrhizobium sp. ORS278] Length = 327 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT ++S+R++++Y HP Sbjct: 269 SATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDSERLLQVYASAHPR 326 >gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ ++ HP Sbjct: 240 SISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRTHLADVMNKYHPR 297 >gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] Length = 296 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 229 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 288 Query: 63 KDK 65 + K Sbjct: 289 RSK 291 >gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] Length = 341 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 STT H LRHSFATHLL G DLR+IQ +LGH+ LSTTQ YT+V+++ ++ +Y+ HP Sbjct: 257 STTPHALRHSFATHLLGGGADLRAIQDLLGHASLSTTQRYTDVDAEHLLSVYETAHPRAR 316 Query: 62 QK 63 ++ Sbjct: 317 RQ 318 >gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627] gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134] Length = 305 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 247 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 304 >gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a] gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni ACN14a] Length = 349 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V R+ E+Y +HP Sbjct: 273 VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLREVYATSHPR 329 >gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297 >gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 331 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATHLL +G D+RS+Q +LGH+RLSTTQ YT++ R+M++YD+ HP + Sbjct: 261 THPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTHLELARIMQVYDKAHPRSDE 320 Query: 63 KD 64 D Sbjct: 321 AD 322 >gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297 >gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 296 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA+HLL NG DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFASHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12] gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12] Length = 277 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 215 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 274 Query: 63 KDK 65 K + Sbjct: 275 KAR 277 >gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 215 VHPHMLRHSFASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAAHPRARR 274 Query: 63 KDK 65 K + Sbjct: 275 KAR 277 >gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHAKHHPR 297 >gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] Length = 304 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L GDLR++Q +LGH+ L+TTQIYT+V+ +R+ +YDQ+HP + Sbjct: 239 VHPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARR 298 Query: 63 KDKK 66 + Sbjct: 299 DRPR 302 >gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM 10152] gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 316 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 257 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVSTLREVWATAHPRAR 316 >gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2] gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa UCBPP-PA14] gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa LESB58] gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAb1] gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016] gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14] gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58] gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016] Length = 303 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 Query: 64 DKKN 67 + Sbjct: 295 GNAD 298 >gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12] gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12] Length = 308 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 47/67 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294 Query: 61 TQKDKKN 67 ++ K N Sbjct: 295 SRSKKLN 301 >gi|296446249|ref|ZP_06888196.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296256286|gb|EFH03366.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 339 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQIY V+ +R++E Y HP Sbjct: 274 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDKQRLLEAYRSAHPRAG 333 Query: 62 QKDKKN 67 + + + Sbjct: 334 RGESRE 339 >gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 311 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 45/66 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G DLRS+Q +LGH +STTQ+YT+V+ + E+Y HP Sbjct: 238 NLHPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHVREVYLSAHPRAH 297 Query: 62 QKDKKN 67 + +K+ Sbjct: 298 EAFRKD 303 >gi|120602210|ref|YP_966610.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120562439|gb|ABM28183.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 472 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHSFATHLL G DLRS+Q +LGH+RL+TTQ YT++ ++E+YD+ HP + Sbjct: 362 SVSPHGLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTHLTLAHLIEVYDKAHPRAS 421 >gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863] gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium] Length = 294 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 46/60 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H LRHSFATHLL +G DLR++QS+LGH+ LSTTQIYT+V ++R+ YD HP Sbjct: 235 VNVTPHKLRHSFATHLLDHGADLRAVQSLLGHASLSTTQIYTHVTTERLKRAYDDAHPRA 294 >gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus thermodenitrificans NG80-2] gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQ+YT+V R+ ++Y Q HP Sbjct: 242 TPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA 298 >gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis] Length = 296 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL +G DLR++Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 240 TPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 301] gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae Sd197] gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185] gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50] gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718] gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli BL21(DE3)] gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017] gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185] gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1] gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489] gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007] gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718] gi|332750959|gb|EGJ81364.1| tyrosine recombinase XerC [Shigella flexneri 4343-70] gi|332751049|gb|EGJ81453.1| tyrosine recombinase XerC [Shigella flexneri K-671] gi|332751906|gb|EGJ82301.1| tyrosine recombinase XerC [Shigella flexneri 2747-71] gi|332764345|gb|EGJ94580.1| tyrosine recombinase XerC [Shigella flexneri 2930-71] gi|332996985|gb|EGK16603.1| tyrosine recombinase XerC [Shigella flexneri VA-6] gi|332997912|gb|EGK17519.1| tyrosine recombinase XerC [Shigella flexneri K-218] gi|332998245|gb|EGK17847.1| tyrosine recombinase XerC [Shigella flexneri K-272] gi|333013785|gb|EGK33148.1| tyrosine recombinase XerC [Shigella flexneri K-227] gi|333019500|gb|EGK38781.1| tyrosine recombinase XerC [Shigella flexneri K-304] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium intracellulare ATCC 13950] Length = 209 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ + HP Sbjct: 151 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHPRAR 209 >gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_001A02] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL G DLRS+Q +LGH+ ++TTQ+YT+++ + + E++ HP Sbjct: 239 EVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37] gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37] Length = 299 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + G+LR++Q++LGH+ L+TTQIYT+++ + + +IYDQ HP + Sbjct: 238 INPHKLRHSFATHMLESSGNLRAVQTLLGHADLATTQIYTHLDFQHLSKIYDQAHPRAKR 297 Query: 63 KD 64 K Sbjct: 298 KK 299 >gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] Length = 303 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H +RH+FATH+L+ G DLR++Q +LGH+ L TQIYT+V R+ ++Y +HP Sbjct: 243 KLTPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRAK 302 Query: 62 Q 62 + Sbjct: 303 K 303 >gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti 1021] gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein [Sinorhizobium meliloti 1021] gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] Length = 311 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAK 305 Query: 62 QKDKKN 67 Q K++ Sbjct: 306 QAKKQD 311 >gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS L+TTQIYT+V +R+ +++ + HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQRLQDLHAKHHPR 297 >gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. viciae 3841] gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312 Query: 63 KDK 65 K Sbjct: 313 AKK 315 >gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5] gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5] Length = 323 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRAR 323 >gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] Length = 318 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ + HP Sbjct: 252 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLAELVLEHHPLAK 311 >gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 296 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 HT RHSFA+HLL G DLRS+Q +LGH+ +STTQIYT+V + + +I+ + HP Sbjct: 238 KVHPHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPR 295 >gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108] gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108] Length = 291 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291 >gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] Length = 307 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E Y HP + Sbjct: 248 EVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQLAHPRV 306 >gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11] gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11] Length = 305 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +ME+Y++ HP Sbjct: 247 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYNRAHPKA 305 >gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] Length = 295 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRHSFATHLL+NG DLRS+Q +LGH+ LSTTQIYT+V +R+ +++ + HP Sbjct: 237 SISPHTLRHSFATHLLANGADLRSVQIMLGHADLSTTQIYTHVTRERLKQLHRELHPR 294 >gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408] gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408] Length = 223 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 165 EVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQHFPRA 223 >gi|218682269|ref|ZP_03529870.1| site-specific tyrosine recombinase XerC [Rhizobium etli CIAT 894] Length = 248 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 190 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 248 >gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. mori str. 301020] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHAKHHPR 297 >gi|307295097|ref|ZP_07574939.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879571|gb|EFN10789.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT+V++ +++IY HP Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTHVDAAHLLDIYRNAHPRA 298 >gi|110635731|ref|YP_675939.1| site-specific tyrosine recombinase XerC [Mesorhizobium sp. BNC1] gi|110286715|gb|ABG64774.1| tyrosine recombinase XerC subunit [Chelativorans sp. BNC1] Length = 313 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIY+ HP Sbjct: 255 TATPHALRHSFATHLLGRGGDLRAIQELLGHASLSTTQVYTAVDTSRLLEIYENAHPR 312 >gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT++ R+ E+Y HP Sbjct: 239 ITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTHLTKIRLREVYTNAHPRA 296 >gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99] gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99] Length = 308 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 47/67 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 235 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 294 Query: 61 TQKDKKN 67 ++ K N Sbjct: 295 SRAKKLN 301 >gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens str. C58] gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 315 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++EIYD HP Sbjct: 257 NATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDTARLLEIYDNAHPRA 315 >gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR++Q++LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 241 ISPHKLRHSFATHLLEGGADLRAVQAMLGHADVSTTQIYTHVDRSHVRRLYDRFHPRA 298 >gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 86-028NP] gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP] gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] Length = 295 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. natto BEST195] Length = 304 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300 Query: 61 TQKD 64 +K+ Sbjct: 301 FKKN 304 >gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430] gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430] Length = 302 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLASVYDAAHPRAKR 299 >gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri 93-146] gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146] Length = 300 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 238 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHPRAKR 297 >gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] Length = 301 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/60 (61%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ R+ME+YD HP Sbjct: 241 TATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYTAVDTARLMEVYDAAHPRAA 300 >gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] Length = 312 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++Y + HP Sbjct: 252 KLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPR 309 >gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A] gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1] gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A] gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905] gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82] gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] Length = 316 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + + HP Sbjct: 259 VSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 328 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL G DLR +Q +LGHS LSTTQIYT+V+ + ++Y +HP Sbjct: 265 EVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQARKVYLSSHPLAK 324 Query: 62 QKDK 65 ++++ Sbjct: 325 EQER 328 >gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 302 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFATHLL N DL+S+Q +LGH +STTQIYT++ +K + E++ + HP Sbjct: 244 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPR 301 >gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFA+HLL G DLR +Q +LGH +STTQIYT+V +R++EI+++ HP Sbjct: 240 NITPHTLRHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVARERLIEIHERYHPR 297 >gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134] Length = 327 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 269 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 326 >gi|323137166|ref|ZP_08072245.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397524|gb|EFY00047.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 336 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V+ KR+++ Y HP Sbjct: 277 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTAVDKKRLLDAYRSAHPRA 335 >gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143] gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019] gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CNPAF512] Length = 317 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312 Query: 63 KDK 65 K Sbjct: 313 AKK 315 >gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY + ++++ ++Y++ HP Sbjct: 241 ITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYAQLVNQKLKDVYNKAHPRA 298 >gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] Length = 310 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 50/62 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLLS GGDLRSIQ +LGH+ LSTTQ+YT V++ R+ME+Y+ +HP Sbjct: 249 TATPHAMRHSFATHLLSAGGDLRSIQDLLGHASLSTTQVYTGVDTARLMEVYEASHPRAA 308 Query: 62 QK 63 ++ Sbjct: 309 RR 310 >gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155] gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155] Length = 306 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 44/66 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300 Query: 61 TQKDKK 66 + K Sbjct: 301 KKTQDK 306 >gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 306 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V + R+ ++ Q HP Sbjct: 246 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVATDRLAQVVQQNHPLAR 304 >gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida subsp. multocida str. Pm70] gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70] Length = 295 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YD HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRKK 295 >gi|13473627|ref|NP_105195.1| site-specific tyrosine recombinase XerC [Mesorhizobium loti MAFF303099] gi|34222994|sp|Q98ED9|XERC_RHILO RecName: Full=Tyrosine recombinase xerC gi|14024377|dbj|BAB50981.1| site-specific recombinase, integrase/recombinase RipX; XerC [Mesorhizobium loti MAFF303099] Length = 312 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+ HP Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTARLLEIYESAHPRA 312 >gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] Length = 302 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 47/58 (81%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H+ RH+FATHLL NG DLR+IQ +LGHS L+TTQ YT++N ++++YD+THP Sbjct: 238 LNYSPHSFRHTFATHLLENGADLRTIQKLLGHSSLATTQKYTHLNLSEILKVYDKTHP 295 >gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] Length = 323 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 264 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVERLREVYATAHPRAR 323 >gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 356 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FATH+L++G DLR++Q +LGH+ LSTTQIYT+V ++R+ Y + HP + Sbjct: 290 ISPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHPRQRR 349 >gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831] Length = 297 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQ+YT+V R+ ++Y HP Sbjct: 239 TITPHTLRHSFATHLLENGADLRLVQEMLGHADISTTQVYTHVTKARLKDMYQSYHPRA 297 >gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. SMY] gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642] gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] Length = 304 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300 Query: 61 TQKD 64 +K+ Sbjct: 301 FKKN 304 >gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] Length = 313 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RHSFATHLL G +LR +Q++LGHS + TTQIYT+++ KR++E Y + HP Sbjct: 255 EVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 291 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y + HP Sbjct: 233 EITPHILRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANIKLKEVYQKAHPRA 291 >gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] Length = 314 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V +R+ E++ Q HP Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARQRLQELHRQHHPR 313 >gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200] Length = 302 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 46/66 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 237 VRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDSAHPRA 296 Query: 61 TQKDKK 66 ++ K Sbjct: 297 KKQQDK 302 >gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073] gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046] gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227] gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS] gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11] gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ATCC 35469] gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a] gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989] gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39] gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026] gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9] gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B] gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412] gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354] gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088] gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736] gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W] gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332282681|ref|ZP_08395094.1| tyrosine recombinase xerC [Shigella sp. D9] gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073] gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli] gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Shigella sonnei Ss046] gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227] gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS] gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11] gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1] gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088] gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412] gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354] gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W] gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972] gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1] gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1] gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3] gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83] gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B] gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14] gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010] gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68] gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180] gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357] gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11] gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520] gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482] gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120] gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3] gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253] gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167] gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74] gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9] gi|332345790|gb|AEE59124.1| tyrosine recombinase XerC [Escherichia coli UMNK88] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 304 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300 Query: 61 TQKD 64 +K+ Sbjct: 301 FKKN 304 >gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] Length = 303 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 300 >gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans 568] gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568] Length = 303 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 300 >gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193] gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193] Length = 312 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M +Y+++HP Sbjct: 254 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMAVYNRSHPKA 312 >gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAO1] gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1] gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] Length = 303 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 Query: 64 DKKN 67 + Sbjct: 295 GNAD 298 >gi|148559918|ref|YP_001259740.1| site-specific tyrosine recombinase XerC [Brucella ovis ATCC 25840] gi|148371175|gb|ABQ61154.1| tyrosine recombinase XerC [Brucella ovis ATCC 25840] Length = 315 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 49/59 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT ++++R++E+YD+THP Sbjct: 257 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQVYTGIDTQRLLEVYDKTHPRA 315 >gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] Length = 303 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD+ HP +K Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRK 294 Query: 64 DKKN 67 + Sbjct: 295 GNAD 298 >gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] Length = 299 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHL+ G DLR+IQ +LGH ++TT+IYT+++ + + Q HP Sbjct: 241 NISPHTFRHSFATHLIEGGADLRAIQEMLGHESITTTEIYTHLDRDFLKQTITQFHPR 298 >gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] Length = 291 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291 >gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC] gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC] gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] Length = 320 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + +YDQ HP Sbjct: 259 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDQAHPRAR 318 Query: 62 QK 63 +K Sbjct: 319 RK 320 >gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327] gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ECD227] Length = 298 Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] Length = 313 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL++G DLR +Q +LGHS L+TTQIYT+V +R+ E++ + HP Sbjct: 255 PLSPHTLRHSFATHLLNHGADLRVVQLLLGHSDLTTTQIYTHVARQRLQELHARHHPR 312 >gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] Length = 300 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 44/61 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + ++YD HP +K Sbjct: 239 HPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298 Query: 64 D 64 Sbjct: 299 K 299 >gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 303 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHPRAKR 300 >gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 291 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 233 EITPHVLRHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291 >gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] Length = 295 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH+ +S+TQ+YT++++K++ E+Y THP Sbjct: 237 KLTPHTLRHSFATHLLENGADLRAVQEMLGHADISSTQLYTHIDTKQIREVYKNTHPRA 295 >gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280] gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042] gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 EDL933] gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4024] gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14359] gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966] gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Escherichia coli O157:H7 str. EDL933] gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli] gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli] gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli] gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli] gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli] gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212] gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. G5101] gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. 493-89] gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. H 2687] gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. USDA 5905] gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. LSU-61] gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125] gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|332994945|gb|AEF05000.1| tyrosine recombinase [Alteromonas sp. SN2] Length = 307 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 246 KVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAH 305 Query: 62 QK 63 +K Sbjct: 306 KK 307 >gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] Length = 392 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 336 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRSLHAQHHPR 391 >gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] Length = 295 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2866] Length = 295 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320] gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis] gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 307 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 245 VNPHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAKR 304 Query: 63 KD 64 + Sbjct: 305 EK 306 >gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] Length = 296 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 232 VGVHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTSLDFQHLAKVYDGAHPRA 291 Query: 61 TQK 63 +K Sbjct: 292 RKK 294 >gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] Length = 299 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 45/66 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 231 MRVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 290 Query: 61 TQKDKK 66 + K Sbjct: 291 AKAKKD 296 >gi|148260195|ref|YP_001234322.1| site-specific tyrosine recombinase XerC [Acidiphilium cryptum JF-5] gi|146401876|gb|ABQ30403.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 313 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 43/59 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++ HP Sbjct: 254 ATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHPRAK 312 >gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] Length = 296 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR++Q +LGH+ +STTQIYT++ KRM ++Y Q P Sbjct: 238 TVTPHTLRHSFATHLLENGADLRTVQELLGHADISTTQIYTHITKKRMTDVYKQYFPRA 296 >gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 317 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 47/63 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP T Sbjct: 252 KVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLDARLAELVHRHHPLAT 311 Query: 62 QKD 64 + D Sbjct: 312 KDD 314 >gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] Length = 302 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHLL G DLRS+Q +LGH+ +STTQIYT+V R+ ++ HP Sbjct: 246 TPHVLRHSFATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >gi|326402863|ref|YP_004282944.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] gi|325049724|dbj|BAJ80062.1| tyrosine recombinase XerC [Acidiphilium multivorum AIU301] Length = 313 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 43/59 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHLL+NG DLR+IQ +LGH+ LSTTQ YT V++ R+M ++ HP Sbjct: 254 ATPHALRHSFATHLLANGADLRAIQELLGHASLSTTQRYTAVDADRLMAVWQAAHPRAK 312 >gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] Length = 302 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT +L+NG DLRS+Q +LGH LSTTQIYT+V +R+ + Y++ P Sbjct: 240 NVHPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTHVTMERLQKDYEKFFPRNE 299 Query: 62 QKD 64 KD Sbjct: 300 GKD 302 >gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT 652] gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 311 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311 >gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi 35000HP] gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP] Length = 304 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL DLR++Q +LGHS LSTTQIYT+++ + + +IYD +HP +K Sbjct: 242 HPHKLRHSFATHLLEASTDLRAVQELLGHSSLSTTQIYTHLDFQHLAKIYDASHPRARRK 301 Query: 64 DKK 66 + Sbjct: 302 RED 304 >gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] Length = 297 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ + HP Sbjct: 239 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARERLKQLHARHHPR 296 >gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72] gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72] Length = 305 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 248 ISPHTLRHAFATHLINHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPR 304 >gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd KW20] gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20] gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] Length = 295 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae B728a] gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPR 297 >gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 45/66 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L + DLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 234 VKVHPHKLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDNAHPRA 293 Query: 61 TQKDKK 66 + K Sbjct: 294 KKDRGK 299 >gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPR 297 >gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498] Length = 321 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++ ++EIY + HP Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHPRA 321 >gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFATHLL N DL+S+Q +LGH +STTQIYT++ +K + E++ + HP Sbjct: 240 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDISTTQIYTHMANKTLKEVHKKFHPR 297 >gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3] Length = 321 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQIYT++++ ++EIY + HP Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQIYTHIDTNHLLEIYQKAHPRA 321 >gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199] gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199] Length = 323 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+++++ HP Sbjct: 262 TATPHALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYTEVDAARLLDVHRSAHPRDR 321 Query: 62 QK 63 + Sbjct: 322 GR 323 >gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 304 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 304 >gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] Length = 179 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K +M++Y +THP I Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQKHIMDVYKRTHPRI 179 >gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 314 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/66 (51%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E + HP Sbjct: 235 NVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLARYHPRGK 294 Query: 62 QKDKKN 67 Q D++ Sbjct: 295 QPDREQ 300 >gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 332 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+FAT LL G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP Sbjct: 272 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHAR 331 Query: 62 Q 62 + Sbjct: 332 K 332 >gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] Length = 299 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP T Sbjct: 239 EVSPHTLRHSFATHLLEAGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRAT 298 >gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 295 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment'] Length = 349 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS+ATHLL G DLR+IQ +LGHSRLSTTQ YT++N +M +YD+ HP Sbjct: 291 KITPHGLRHSYATHLLQAGADLRAIQELLGHSRLSTTQRYTHLNLDHLMAVYDKAHPRA 349 >gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii NGR234] gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234] Length = 313 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/65 (50%), Positives = 47/65 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ E+ HP Q Sbjct: 249 ISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHELVQNHHPLAKQ 308 Query: 63 KDKKN 67 K++ Sbjct: 309 AKKQD 313 >gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] Length = 291 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M H LRHSFATHLL NG D+R +Q +LGHS LSTTQIYT+V + ++++ Y + HP Sbjct: 231 MKLHPHMLRHSFATHLLDNGADIRVVQELLGHSSLSTTQIYTHVTTAQLVKAYKKAHP 288 >gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 298 >gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 303 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+ RHSFATHLL G D+R +Q +LGHS + TTQIYT V+ + E + ++HP Sbjct: 245 VSPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPR 301 >gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] Length = 300 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H +RHSFATHLL NG DLRS+Q +LGH LSTTQIYT+V +++ +IY +HP Sbjct: 240 NISPHVIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIYTHVTKQKLKKIYHLSHPRAK 299 >gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM] gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM] Length = 305 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++EIY HP Sbjct: 247 SATPHAMRHSFATHLLNAGGDLRTIQELLGHASLSTTQAYTAVDTARLLEIYRAAHPKA 305 >gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] Length = 304 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD HP Sbjct: 240 NLHPHMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTHLDFQHLSKVYDTAHPRAR 299 Query: 62 QKD 64 ++ Sbjct: 300 KRK 302 >gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus thermodenitrificans NG80-2] gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus thermodenitrificans NG80-2] Length = 309 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 251 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRCIYLQAHPRA 309 >gi|111225141|ref|YP_715935.1| tyrosine recombinase [Frankia alni ACN14a] gi|111152673|emb|CAJ64414.1| Tyrosine recombinase [Frankia alni ACN14a] Length = 355 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATH+L G DLRS+Q LGH+ L+TTQIYT+V +R+ ++Q HP Sbjct: 299 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHPRA 355 >gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis HTE831] gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] Length = 305 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGH LS+TQIYT+V + E Y ++HP Sbjct: 241 VHVHPHKLRHTFATHLLNEGADLRSVQELLGHESLSSTQIYTHVTKDHLREAYMKSHPRA 300 >gi|99082221|ref|YP_614375.1| site-specific tyrosine recombinase XerC [Ruegeria sp. TM1040] gi|99038501|gb|ABF65113.1| phage integrase [Ruegeria sp. TM1040] Length = 311 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +ME+Y + HP Sbjct: 253 TATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARAHPKA 311 >gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] Length = 308 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ + HP Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHPRA 308 >gi|110597063|ref|ZP_01385352.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] gi|110341254|gb|EAT59719.1| Phage integrase:Phage integrase, N-terminal SAM-like [Chlorobium ferrooxidans DSM 13031] Length = 336 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL++G DL S+ +LGHS LSTT+IYT+V R+ E+Y + HP Sbjct: 281 PHILRHSFATHLLNSGADLTSVSEMLGHSNLSTTEIYTHVTFDRLKEVYRKAHPRA 336 >gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60] Length = 303 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHPRAKR 300 >gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222] Length = 304 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 304 >gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] Length = 305 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] Length = 307 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 38/60 (63%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ YT V++ +M+IYD+ HP Sbjct: 246 SATPHALRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYTAVDAAHLMQIYDRAHPRAR 305 >gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 298 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRHSFATHLL NG DLRSIQ +LGH ++TT+IY +++ + E+ HP Sbjct: 240 SISPHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVHLDRSFLKEVMHSYHPR 297 >gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae PittEE] gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE] gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2846] Length = 295 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. sepedonicus] gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp. sepedonicus] Length = 328 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFATHL++ G D+R +Q +LGHS ++TTQIYT V + ++Y HP Sbjct: 267 EISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTRVTVDTLRDVYTTAHPRAR 326 Query: 62 Q 62 + Sbjct: 327 R 327 >gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 300 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +RM +++ Q HP Sbjct: 242 SLSPHTLRHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKERMKDLHAQHHPR 299 >gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1] Length = 365 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+ HP + Sbjct: 282 VHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYENAHPRARR 341 Query: 63 K 63 + Sbjct: 342 Q 342 >gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHPR 297 >gi|218458541|ref|ZP_03498632.1| site-specific tyrosine recombinase XerC [Rhizobium etli Kim 5] Length = 198 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 140 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 198 >gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] Length = 304 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRHSFATHLL G DLR +Q +LGH+ L+TTQIYT V+ + + E+Y +HP Sbjct: 246 ITPHTLRHSFATHLLEGGADLRVVQELLGHASLATTQIYTRVSVESLREVYATSHPRAR 304 >gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII] gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII] Length = 295 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] Length = 294 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHLL NG DLR +Q +LGH+ LSTTQ+YT+VN R+ ++Y HP Sbjct: 237 ITPHVLRHSFATHLLENGADLRVVQEMLGHADLSTTQMYTHVNKARLHDVYKNHHPRA 294 >gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467] Length = 305 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P + Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRAS 297 >gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii NGR234] gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234] Length = 310 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 39/59 (66%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+S R++EIYD+ HP Sbjct: 252 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLEIYDRAHPRA 310 >gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] Length = 330 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 40/62 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH FATHLL +G DLRS+Q +LGH+ + TTQIYT+V R+ + HP Sbjct: 266 KVSPHVLRHCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHPLAK 325 Query: 62 QK 63 ++ Sbjct: 326 RR 327 >gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 300 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G D+RSIQ +LGH+ LSTTQ YT+V +++ ++YD HP Sbjct: 242 KVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTHVTVEQLQQVYDAAHPRA 300 >gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 383 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 319 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQ 378 Query: 63 KDK 65 K Sbjct: 379 AKK 381 >gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] Length = 299 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQELHARHHPR 297 >gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514] gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514] Length = 337 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHS+ATH+L G DLRS+Q +LGH+ L TTQ+YT+V+++R+ YD HP Sbjct: 279 SLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKRAYDSAHPRA 337 >gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSFATHLL+ G DLR++Q +LGH+ +STTQIYT++ ++E Y + HP + Sbjct: 248 AVSPHTLRHSFATHLLAGGADLRAVQELLGHADISTTQIYTHLTRHHLLEAYLRAHPRM 306 >gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 313 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR IQ++LGH+ ++TTQIYT+V + + + HP Sbjct: 249 KVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHPLGR 308 Query: 62 QK 63 +K Sbjct: 309 KK 310 >gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] Length = 301 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 45/62 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS A+HLL + GDLR++Q +LGH+ +STTQIYT++N + + E+YD+ HP ++ Sbjct: 240 PHLFRHSCASHLLESSGDLRAVQELLGHADISTTQIYTHLNFQHLAEVYDKAHPRARKRK 299 Query: 65 KK 66 K Sbjct: 300 KD 301 >gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv. citri str. 306] gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] Length = 307 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 41/63 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL G DLR +Q +LGHS LSTTQIYT+V + ++Y +HP Sbjct: 238 VHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLARP 297 Query: 63 KDK 65 ++ Sbjct: 298 QNN 300 >gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] Length = 294 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQ+Y + R+ E+Y +THP Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQVYAQIAKNRIKEVYKKTHPRA 294 >gi|167625815|ref|YP_001676109.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] gi|167355837|gb|ABZ78450.1| tyrosine recombinase XerC [Shewanella halifaxensis HAW-EB4] Length = 303 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 238 MKVHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRA 297 Query: 61 TQK 63 ++ Sbjct: 298 RKR 300 >gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] Length = 311 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+FAT LL G ++R++Q +LGHS LSTTQIY +V+ +++ E+Y + HP Sbjct: 251 TITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHAR 310 Query: 62 Q 62 + Sbjct: 311 K 311 >gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 305 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RHS ATHLL G DLR +Q +LGHS L+TTQIYT+V+++R+ +YDQ HP Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHPRA 305 >gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 246 PISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQTLHAEHHPR 303 >gi|182680028|ref|YP_001834174.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635911|gb|ACB96685.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 323 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 37/58 (63%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ+YT V+S+R++E Y HP Sbjct: 264 SATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQLYTAVDSERLLEAYRSAHPR 321 >gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] Length = 303 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +I++ HP Sbjct: 245 PLSPHGLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKKIHEMHHPR 302 >gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] Length = 294 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++ K + E+Y ++HP Sbjct: 237 VTPHTLRHSFATVLLENGADLRIVQELLGHSDISTTQIYTHISKKHLTEVYQRSHPR 293 >gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] Length = 305 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RHS ATHLL G DLR +Q +LGHS L+TTQIYT+V+++R+ +YDQ HP Sbjct: 249 TPHGVRHSAATHLLEGGADLRVVQELLGHSSLNTTQIYTHVSAQRLQRVYDQAHPRA 305 >gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] Length = 281 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ+YT+V S+R+ ++++Q HP Sbjct: 224 VSPHALRHSAATHMLEGGADLRVVQELLGHSSLQTTQVYTHVTSERLKKVFNQAHPRA 281 >gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6] gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6] Length = 295 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ + Y Q HP Sbjct: 240 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 295 >gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] Length = 301 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL + GDLR++Q +LGH+ + TTQIYT+++ + + YD+ HP Sbjct: 237 NLHPHMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTHLDFQHLANTYDKAHPRAK 296 Query: 62 QKDKK 66 +K Sbjct: 297 RKKDD 301 >gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] Length = 310 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHL+ G DLR++Q++LGH+ L+TTQIYT+VNS R+ +YD+ HP Sbjct: 237 PISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHPR 294 >gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175] gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175] Length = 306 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 44/66 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300 Query: 61 TQKDKK 66 + K Sbjct: 301 KKTQDK 306 >gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F] gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY3-11A] Length = 288 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL +G DLR IQ +LGH+ LSTTQ YT+++ + +M++Y++ HP Sbjct: 228 AVGPHTLRHTFATHLLQSGADLRVIQELLGHASLSTTQKYTHLDIQHLMDVYEKCHPLA 286 >gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae WSM419] gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419] Length = 313 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 248 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQSHHPLAK 307 Query: 62 QKDKKN 67 Q K++ Sbjct: 308 QAKKQD 313 >gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 309 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V ++R+ I+ Q HP Sbjct: 249 AVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLRGIHHQFHPRSQ 308 >gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] Length = 300 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG D+R+IQ +LGH ++TT++Y +V+ + E+ + HP Sbjct: 240 NVSPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMHVDRTHLAEVVREHHPR 297 >gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] Length = 296 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGH +STTQIYT++ RM ++Y + HP Sbjct: 240 TPHTLRHSFATHLLENGADLRAVQEMLGHVDISTTQIYTHITKTRMKDVYSRYHPRA 296 >gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase [Rhizobium etli CIAT 652] gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 383 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 319 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 378 Query: 63 KDK 65 K Sbjct: 379 AKK 381 >gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] Length = 321 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 263 VSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYSAAHPRAR 321 >gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] Length = 302 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 238 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 297 Query: 63 KD 64 K Sbjct: 298 KK 299 >gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] Length = 301 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L NG DLR +Q +LGH +STTQIYT+++ R+ E+Y ++ P Sbjct: 243 KVSPHVLRHSFATHILENGADLRLVQELLGHENISTTQIYTHISHYRLQEVYRKSFPGA 301 >gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] Length = 295 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHLL NG DLR+IQ +LGH+ L+TTQ+YT+VN R+ ++Y + HP Sbjct: 237 EITPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str. 8401] gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] Length = 298 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510] gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510] Length = 321 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 47/61 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL++GGDLR+IQ +LGH+ LSTTQ YT+V ++++M +Y HP Sbjct: 260 NATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQLMNVYRNAHPRAR 319 Query: 62 Q 62 + Sbjct: 320 K 320 >gi|217977361|ref|YP_002361508.1| integrase family protein [Methylocella silvestris BL2] gi|217502737|gb|ACK50146.1| integrase family protein [Methylocella silvestris BL2] Length = 329 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 40/59 (67%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLLS GGDLRSIQ +LGH+ LSTTQIYT V+S R++E Y HP Sbjct: 270 SATPHALRHSFATHLLSRGGDLRSIQELLGHASLSTTQIYTAVDSARLIEAYRSAHPRA 328 >gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] Length = 314 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 255 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHPRAR 314 >gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 326 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD +HP Sbjct: 262 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDASHPRAR 321 Query: 62 QKD 64 +K Sbjct: 322 RKP 324 >gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] Length = 309 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 250 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 309 >gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica RB50] gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50] Length = 310 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA 310 >gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M] gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M] Length = 313 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP T Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313 >gi|209551174|ref|YP_002283091.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536930|gb|ACI56865.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 317 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312 Query: 63 KDK 65 K Sbjct: 313 AKK 315 >gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf0-1] gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297 >gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12] gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12] Length = 317 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++ +R+ ++ + HP Sbjct: 258 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHPRA 317 >gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13] gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13] Length = 298 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 240 AISPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKDLHQKHHPR 297 >gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] Length = 311 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHPKA 311 >gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536] gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536] Length = 298 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] Length = 310 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT RHSFATHLL G D+R +Q +LGHS ++TTQIYT V + + EIY HP Sbjct: 250 ISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTKVTRETLKEIYATAHPRA 307 >gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans Agy99] gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99] Length = 313 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP T Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313 >gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 306 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP Sbjct: 245 KVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAH 304 Query: 62 QK 63 +K Sbjct: 305 KK 306 >gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] Length = 313 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + +LR++Q +LGH +STTQIYT+++ + + + YDQ HP + Sbjct: 244 VSPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAHK 303 Query: 63 ----KDKKN 67 K K++ Sbjct: 304 NGTPKKKED 312 >gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+FA+HLL+NG DLR++Q +LGH+ +STTQIYT+V +R+ E+ HP + Sbjct: 256 VSPHTLRHAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDERLKELVQTHHPLAKK 315 >gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 299 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V +++ E+Y Q+HP Sbjct: 242 SPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVQQLREVYAQSHPRAR 299 >gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] Length = 297 Score = 114 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S HTLRHSFA+HLL G DLRS+Q +LGHS +STTQIYT+V + + + +++ HP Sbjct: 240 SIKPHTLRHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTHVTYRHLKDAHEKFHPR 297 >gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 261 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVNALREVWAGAHPRAR 320 >gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATHLL G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP Sbjct: 236 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHPRA 292 >gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4] gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4] Length = 332 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR +Q +LGHS +STTQIYT+V +R+ + + HP Sbjct: 267 AVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTHVLEERLQILVETHHPLAK 326 Query: 62 QKDK 65 + Sbjct: 327 HRKN 330 >gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58] gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58] Length = 338 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH FATHLL+ G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 280 VSPHTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYTLVTVDSLREVYAAAHPRAR 338 >gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] Length = 304 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHTQHHPRA 304 >gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] Length = 298 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFATHLL NG DLR +Q +LGH +STTQIYT+V + + ++ HP Sbjct: 240 NVTPHTLRHSFATHLLENGADLRVVQMLLGHVDISTTQIYTHVTREHVRHVHQSFHPR 297 >gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411] Length = 299 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ + + EI+ +HP Sbjct: 242 VSPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHPR 298 >gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. B076] gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHPR 297 >gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] Length = 297 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] Length = 294 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + + YDQ HP + Sbjct: 233 VHPHMLRHAFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDWQHLAKAYDQAHPRARK 292 Query: 63 KD 64 KD Sbjct: 293 KD 294 >gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] Length = 360 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+RS+Q +LGH+ ++TTQIYT++ + + ++ HP Sbjct: 303 ISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 173 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 232 >gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223] gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223] Length = 306 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 44/66 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300 Query: 61 TQKDKK 66 + K Sbjct: 301 KKTQDK 306 >gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 313 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ + HP Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHPRAR 313 >gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89] gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88] gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605] gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89] gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15] gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034] gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146] gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3] gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1] gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252] gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263] gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86] gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605] Length = 298 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC 19707] gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707] gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] Length = 300 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 49/63 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + +IYDQTHP Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKIYDQTHPRA 296 Query: 61 TQK 63 +K Sbjct: 297 RKK 299 >gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 298 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ ++ HP Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEVYMHVDRSHLAQVLNEFHPR 297 >gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans 568] gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568] Length = 299 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] Length = 306 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL+ G DLRS+Q +LGH+RLSTTQ+YT+V ++R+ IYD P Sbjct: 247 LKISPHTLRHTFATHLLNGGADLRSVQELLGHARLSTTQVYTHVTAERLKNIYDDKFPR 305 >gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] Length = 302 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT+RH+FATHLL +G DLRS+Q +LGH+ LSTTQIYT+V + R+ +Y + HP Sbjct: 245 VSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302 >gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185] gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185] Length = 306 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 44/66 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300 Query: 61 TQKDKK 66 + K Sbjct: 301 KKTQDK 306 >gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] Length = 342 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+ +YD HP Sbjct: 252 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAHPR 308 >gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + + ++ + HP Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDEHLKDLVLRHHPLAR 310 Query: 62 Q 62 + Sbjct: 311 E 311 >gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 309 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 36/65 (55%), Positives = 47/65 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T+ HTLRHSFATHLL G DLRS+Q +LGH L+TTQIYT+V++ R+ + Y+ HP T Sbjct: 240 KTSPHTLRHSFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTARLRDTYELAHPHAT 299 Query: 62 QKDKK 66 +K Sbjct: 300 AARRK 304 >gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] Length = 305 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRHSFATHLL G DLRS+Q +LGHS + TQIYT+V+ + E++ HP Sbjct: 247 SISPHTLRHSFATHLLEGGADLRSVQEMLGHSSIKATQIYTHVDRAFIKEVHKSFHPR 304 >gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] Length = 313 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+HLL+ G DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 248 KVSPHVLRHAFASHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDERLKQLVSEHHPLAK 307 Query: 62 QKDKKN 67 Q ++ Sbjct: 308 QPKNRD 313 >gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii PYR-1] gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1] Length = 317 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 258 TVSPHVLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVTALREVWAGAHPRAR 317 >gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1] Length = 298 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] Length = 312 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 254 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 312 >gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32] gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32] Length = 320 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 264 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320 >gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 311 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310 Query: 62 Q 62 + Sbjct: 311 E 311 >gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76] gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342] Length = 296 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296 >gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] Length = 300 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 242 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRTLHEQHHPR 299 >gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379] gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379] Length = 295 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +R+ ++ + HP Sbjct: 238 ISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKRLHQEIHPR 294 >gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678] Length = 306 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 44/66 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L DLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP Sbjct: 241 VRVHPHKLRHSFATHMLEASADLRAVQELLGHANLATTQIYTSLDFQHLAKVYDNAHPRA 300 Query: 61 TQKDKK 66 + K Sbjct: 301 KKTQDK 306 >gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] Length = 313 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y HP Sbjct: 254 VSPHMLRHSFATHLLDGGADVRVVQELLGHASVATTQVYTLVTVDRLREVYAAAHPRAR 312 >gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/63 (55%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL +G DLRS+Q +LGHSRLSTTQ YT+++ +M+ YDQ HP Sbjct: 244 EISPHVLRHSFATHLLRSGADLRSVQELLGHSRLSTTQRYTHLSLDGIMQTYDQAHPKAK 303 Query: 62 QKD 64 + + Sbjct: 304 KNE 306 >gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 308 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ + Y Q HP Sbjct: 253 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQAHPRA 308 >gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] Length = 294 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ +R+ E++ + HP Sbjct: 238 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIARERLKELHSKYHPR 293 >gi|145641992|ref|ZP_01797565.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae R3021] gi|145273358|gb|EDK13231.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 22.4-21] Length = 185 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 126 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 185 >gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 307 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 45/67 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFAT LL NG DLR +Q +LGHS L+ TQ+YT++N ++ EI+ + HP Sbjct: 241 IKISPHKLRHSFATELLGNGADLRMVQEMLGHSSLAATQVYTHINFAKLQEIFSKAHPRA 300 Query: 61 TQKDKKN 67 +++ Sbjct: 301 KLHKEES 307 >gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 295 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|118590571|ref|ZP_01547973.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] gi|118437034|gb|EAV43673.1| site-specific tyrosine recombinase XerC [Stappia aggregata IAM 12614] Length = 319 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S ++ YD+ HP Sbjct: 261 SATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHPR 318 >gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] Length = 311 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT+RH+FATHLL +G DLR++Q +LGH LSTTQIYT+V ++R+ +Y++ HP Sbjct: 254 VSPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] Length = 307 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGHS ++TTQ+YT V M E+Y +HP Sbjct: 248 EVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYTLVTVNTMREVYATSHPRAR 307 >gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 253 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 311 >gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8] gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8] gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000] Length = 296 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEYFPRA 296 >gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQEMHARHHPR 297 >gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] Length = 312 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++Y + HP Sbjct: 252 KLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPR 309 >gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] Length = 299 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] Length = 314 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y+ HP Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNNAHPKAG 313 Query: 62 Q 62 + Sbjct: 314 R 314 >gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] Length = 317 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 258 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHPRAR 317 >gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1] gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1] Length = 282 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATH+L NG D+R+IQ +LGHS LSTTQIYT V + + + ++ Sbjct: 218 IRVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKA 273 >gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313] Length = 294 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + R+ EIY +THP Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 294 >gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 316 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 258 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 316 >gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] Length = 296 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + R+ EIY +THP Sbjct: 239 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 327 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP Sbjct: 262 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAR 321 Query: 62 QKD 64 +K Sbjct: 322 RKP 324 >gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 35/65 (53%), Positives = 49/65 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T HT RH FA+HLL+NG DLRSIQ +LGH LS+TQIYT +NS + +Y+++HP + Sbjct: 247 SLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306 Query: 62 QKDKK 66 +++ K Sbjct: 307 EQNNK 311 >gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct] Length = 299 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ +++ + HP Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPR 297 >gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92] gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92] Length = 299 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH +STTQIYT+++ + +M++Y+ HP + Sbjct: 236 VHPHRLRHSFASHMLESSGDLRAVQELLGHEDISTTQIYTHLDFQHLMQVYEGAHPRAHK 295 Query: 63 KDKK 66 K KK Sbjct: 296 KGKK 299 >gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614] gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614] Length = 318 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E++ HP Sbjct: 259 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDNLREVFATAHPRAR 317 >gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] Length = 337 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHPLAR 319 Query: 62 QK 63 + Sbjct: 320 KD 321 >gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] Length = 299 Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFA+HLL++G DLR IQ +LGH+ +STT+IYT+++S R+ I+ + HP Sbjct: 241 NIHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPR 298 >gi|289707069|ref|ZP_06503398.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58] gi|289556207|gb|EFD49569.1| site-specific tyrosine recombinase XerC [Micrococcus luteus SK58] Length = 373 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q +LGH+ L TTQ+YT+V+ R+ E Y Q HP Sbjct: 318 PHALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHPRA 373 >gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] Length = 302 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 303 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATHLL G DLR +Q +LGHS L TTQ+YT+V+++R+ ++Y ++HP Sbjct: 247 TPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLKDVYARSHPRA 303 >gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104] gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. avium ATCC 25291] gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104] Length = 313 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ + HP Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAEAHPRAR 313 >gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2] gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3] gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5] gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96] gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704] gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1] gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol] gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1] gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6] gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG] gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11] gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2] gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3] gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5] gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96] gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704] gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1] gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol] gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1] gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6] gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11] gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137] gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017] gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027] gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141] gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244] gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012] gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645] gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341] gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346] gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B] gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A] gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62] Length = 296 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296 >gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] Length = 301 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT LL+NG DLR++Q +LGHS LSTTQIYT+V +++ E Y + P T Sbjct: 240 KIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRST 299 >gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] Length = 299 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V+ + + EI+ +HP Sbjct: 242 VSPHSLRHSFATHLLEGGADIRVVQELLGHASVATTQIYTKVSPEHLREIWASSHPR 298 >gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1] gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188] gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98] gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1] gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188] gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98] gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031] gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043] gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312] gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630] gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF] Length = 296 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296 >gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42] Length = 317 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQMHHPLAKQ 312 Query: 63 KDK 65 K Sbjct: 313 AKK 315 >gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 298 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFATHLL N DL+S+Q +LGH ++TTQIYT++ +K + E++ + HP Sbjct: 240 KVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPR 297 >gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 320 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQIYT+V+S R+ + Y Q HP Sbjct: 265 PHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYTHVSSDRLRKAYRQAHPRA 320 >gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 325 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ ATHLL G DLRS+Q +LGH+ LSTTQ Y ++ ++++YDQ HP Sbjct: 258 PHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLHLTMDHLLKVYDQAHPRARSAQ 317 Query: 65 KKN 67 +++ Sbjct: 318 EED 320 >gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] Length = 305 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL NG ++ S++ +LGHS +STTQIYT+VN++R+ + + +THP Sbjct: 240 KASPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQAFKKTHPRA 298 >gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] Length = 296 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296 >gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] Length = 296 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296 >gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] Length = 289 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ +++ HP Sbjct: 231 AVSPHTLRHAFATHLVNHGADLRVVQMLLGHSNLSTTQIYTHVAEARLAKVFAAHHPRA 289 >gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. 8004] gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. B100] gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 258 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 317 Query: 63 KD 64 K Sbjct: 318 KK 319 >gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] Length = 300 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 244 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRALHEQHHPR 299 >gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei] Length = 293 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292 >gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 309 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 251 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 309 >gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083] gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083] Length = 314 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 35/63 (55%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLRSIQ++LGH+ ++TT+IYT+V R+ E+ Q HP Sbjct: 252 KVTPHTLRHAFATHLLENGADLRSIQTLLGHADVATTEIYTHVLEARLQELVLQHHPLAN 311 Query: 62 QKD 64 D Sbjct: 312 DDD 314 >gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001] gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001] gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG] Length = 293 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ +Y +THP Sbjct: 236 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292 >gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. viciae 3841] gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V++ R++E+YD+ HP Sbjct: 241 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDASRLLEVYDRAHPRA 299 >gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ +++ + HP Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPR 297 >gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 314 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+ +Y HP Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHPRAK 313 >gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As] Length = 317 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 45/60 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++ +R+ ++ + HP Sbjct: 258 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKTLHARHHPRA 317 >gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] Length = 323 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 2/68 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL NG DLR++Q +LGHS LSTTQIYT+V R+ + D HP Sbjct: 255 PLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHPHSK 314 Query: 62 Q--KDKKN 67 K +N Sbjct: 315 SVLKKSEN 322 >gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302] Length = 296 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HTLRHSFATHLL NG DLR +Q +LGH+ +STTQIYT++ +RM ++Y + P Sbjct: 238 NITPHTLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITKQRMADVYKEHFPRA 296 >gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] Length = 299 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHL+ G DLR++Q +LGHS ++TT+IYT+++ + I + HP Sbjct: 241 SISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRDYLRGIITEFHPR 298 >gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] Length = 333 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRHSFATH+L+ G DLR++Q ILGH+ ++TTQIYT+++ ++ E+Y HP Sbjct: 277 HPHTLRHSFATHMLAGGADLRALQEILGHADIATTQIYTHIDRTQLREVYLAAHPRA 333 >gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] Length = 322 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ ++EIY + HP Sbjct: 264 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNYLLEIYQKAHPRA 322 >gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum GMI1000] gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307 >gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] Length = 314 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ Q HP Sbjct: 256 EISPHTLRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVATARLQQLHQQHHPRA 314 >gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] Length = 313 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V ++ E+Y +HP Sbjct: 250 EISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDKLREVYATSHPRA 308 >gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ Q HP Sbjct: 252 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLSELVLQHHPLAR 311 >gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum] Length = 314 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/65 (52%), Positives = 47/65 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRHSFATHLLS+G D+RSIQ +LGHS + TT+IYT+V+ + + E + HP Sbjct: 235 SVSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRGK 294 Query: 62 QKDKK 66 + +K Sbjct: 295 RPEKD 299 >gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217] gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217] Length = 321 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 47/66 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP Sbjct: 255 VPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRA 314 Query: 61 TQKDKK 66 + +K Sbjct: 315 KKGREK 320 >gi|332289908|ref|YP_004420760.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 296 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 42/60 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGH LSTTQIYT++N + + ++YD HP +K Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHENLSTTQIYTHLNFQHLAQVYDSAHPRAKRKK 296 >gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD HP + Sbjct: 235 VHPHLLRHSFASHLLESSGDLRAVQELLGHADISTTQVYTHLDYQHLAKVYDAAHPRARR 294 Query: 63 KD 64 K Sbjct: 295 KP 296 >gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 305 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 41/64 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHSFATHLL NG DLR +Q +LGH+ LSTTQIY +V R+ Y+ HP Sbjct: 241 LHIHPHMFRHSFATHLLDNGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHAHPRA 300 Query: 61 TQKD 64 +++ Sbjct: 301 GKEN 304 >gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] Length = 302 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRHSFATHLL G DLRS+Q +LGH +STTQ+YT+V+ + ++Y + HP Sbjct: 240 HPHTLRHSFATHLLEGGADLRSVQELLGHVDISTTQLYTHVDRSHIRDVYLEAHPRA 296 >gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 311 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310 Query: 62 Q 62 + Sbjct: 311 E 311 >gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] Length = 282 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +RM E+++ HP Sbjct: 226 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKQRMQELHEHHHPR 281 >gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 305 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 ++ + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ I+ Q HP Sbjct: 246 VALSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKSIHQQHHPR 304 >gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 303 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + ++YD HP + Sbjct: 241 INPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLAKVYDAAHPRAKR 300 >gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] Length = 309 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YDQTHP + Sbjct: 241 VHPHKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTHLDFQHLAAVYDQTHPRSKR 300 Query: 63 KDKK 66 K K Sbjct: 301 KKLK 304 >gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 47/60 (78%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L + G+LR++QS+LGH+ LSTTQ+YT+++ + + E+YD+ HP +K Sbjct: 239 PHKLRHSFATHMLESSGNLRAVQSLLGHANLSTTQVYTHLDFQHLAEVYDKAHPRAKRKK 298 >gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] Length = 306 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y+++HP Sbjct: 248 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRSHPKA 306 >gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132] gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132] Length = 316 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 45/64 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATH+L G DLRS+Q +LGH L+TTQ YT+++ +R+M++YD HP Sbjct: 247 LDVHPHTLRHSFATHMLEAGADLRSVQELLGHENLTTTQRYTHLDMQRIMQVYDHAHPLA 306 Query: 61 TQKD 64 D Sbjct: 307 HAGD 310 >gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] Length = 314 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 47/60 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++Y++ HP T Sbjct: 254 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMDVYNRAHPKAT 313 >gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 337 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 260 AVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHPLAR 319 Query: 62 QK 63 + Sbjct: 320 KD 321 >gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ] gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHARHHPR 297 >gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAO1] gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2] gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa LESB58] gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAb1] gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1] gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58] gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ +++ + HP Sbjct: 240 SISPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQDLHARHHPR 297 >gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 321 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL+NG DLR +Q +LGH LSTTQ+YT+V R+ E+Y HP Sbjct: 266 PHDLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] Length = 298 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR++Q +LGH+ +STTQIYT+V+ + +YD+ HP Sbjct: 242 SPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 298 >gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] Length = 311 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310 Query: 62 Q 62 + Sbjct: 311 E 311 >gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] Length = 297 Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKFHPR 296 >gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 313 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 5/69 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP----- 58 H RHSFATHLL G D+R++Q +LGH+ LSTT IYT+V+ KR+ ++Y HP Sbjct: 245 HPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTHVSLKRLQDVYRNAHPHGSTG 304 Query: 59 SITQKDKKN 67 S+ +K++K+ Sbjct: 305 SVGKKEQKS 313 >gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] Length = 317 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 258 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTSHPRAR 317 >gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium efficiens YS-314] Length = 310 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+ ATHLL G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP Sbjct: 254 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] Length = 302 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + DLR++Q +LGHS +STTQIYT+++ + + EIYD+ HP + Sbjct: 240 IHPHMLRHSFASHLLESSHDLRAVQELLGHSNISTTQIYTHLDFQHLAEIYDKAHPRAKK 299 Query: 63 KD 64 K Sbjct: 300 KP 301 >gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10] gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10] Length = 299 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 241 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 299 >gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209] gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209] Length = 308 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +T+ H LRH+ ATHLL G DLR++Q ILGHS L+TTQIYT+V+ R+ Y Q HP Sbjct: 250 ATSPHALRHTAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRSSYQQAHPRA 308 >gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301] gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301] Length = 302 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHHKHHPR 301 >gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 313 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 252 KVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLQELVLEHHPLAK 311 Query: 62 Q 62 + Sbjct: 312 R 312 >gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 306 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL+ G DLRS+Q ++GH RLS+TQ+YT+V +R+ ++Y ++HP Sbjct: 246 KISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHPRAK 305 >gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] Length = 300 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 44/61 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L GDLR++Q +LGHS L+TTQIYT+++ + + ++YD HP +K Sbjct: 239 HPHKLRHSFATHMLEGSGDLRAVQELLGHSSLATTQIYTHLDFQHLAKVYDAAHPRARKK 298 Query: 64 D 64 Sbjct: 299 K 299 >gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010] gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010] Length = 303 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ Q HP Sbjct: 245 TLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKERLKQLHGQHHPR 302 >gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] Length = 308 Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAQHHPRA 308 >gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] Length = 320 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 46/63 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ + TTQIYT+++ + + ++YDQ HP +K Sbjct: 253 HPHLLRHSFASHLLESSGDLRAVQELLGHTDIGTTQIYTHLDFQHLAQVYDQAHPRARKK 312 Query: 64 DKK 66 K Sbjct: 313 ASK 315 >gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] Length = 329 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 267 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 326 Query: 63 KDK 65 ++K Sbjct: 327 QEK 329 >gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2] gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2] Length = 304 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ +M +Y++ HP Sbjct: 246 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDAAHLMSVYEKAHPKA 304 >gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] Length = 307 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 41/62 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL G DLR +Q +LGHS LSTTQIYT+V + ++Y +HP Sbjct: 238 VHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAKP 297 Query: 63 KD 64 ++ Sbjct: 298 QN 299 >gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia succiniciproducens MBEL55E] gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 295 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFAT +L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP ++ Sbjct: 236 PHKLRHSFATQMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRRK 295 >gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 302 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATH+L+NG DLRS+Q +LGHS +STTQIYT+V + + Y + P Sbjct: 244 TIHPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTHVTPEHLKRDYRKFFPRA 302 >gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8] gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8] Length = 301 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQDLHQAHHPR 300 >gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 310 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 46/61 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FATHLL N +R++Q +LGH LSTTQIYT+V+++R+ ++YD HP +K Sbjct: 250 TPHVLRHTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDACHPHGRKK 309 Query: 64 D 64 + Sbjct: 310 E 310 >gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis Tohama I] gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I] gi|332382048|gb|AEE66895.1| site-specific tyrosine recombinase XerD [Bordetella pertussis CS] Length = 310 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA 310 >gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] Length = 313 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V M E+Y HP Sbjct: 254 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVNTMREVYATAHPRAR 313 >gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4] gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4] Length = 304 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT RHSFATHLL G DLR++Q +LGH RL+TTQIYT ++ +R+ IY++THP Sbjct: 246 KVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTRLSLERIKHIYEKTHPRA 304 >gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36] gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36] Length = 333 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YD HP + Sbjct: 270 VNPHKLRHSFATHMLESSGDLRAVQELLGHANISTTQIYTSLDFQHLAKVYDAAHPRAKK 329 Query: 63 KDKK 66 K + Sbjct: 330 KRED 333 >gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] Length = 284 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 226 NITPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQQLHSRHHPR 283 >gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens] Length = 303 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLANVYDAAHPRAKR 300 >gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] Length = 311 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS+ATHLL+ G D+R +Q +LGH+ ++TTQ+YT V ++ + E+Y HP Sbjct: 252 VSPHTLRHSYATHLLAGGADVRVVQELLGHASVTTTQLYTLVTAQTLREVYAAAHPRAR 310 >gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 310 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 34/62 (54%), Positives = 47/62 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT H RHSFATHLL +G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y HP + Sbjct: 247 TTTPHVFRHSFATHLLLSGADIRSIQELLGHANLSTTQIYTHLDHKSIIDHYKNFHPQVI 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1] Length = 306 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [polymorphum gilvum SL003B-26A1] gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 248 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRQLVEAHHPLAK 307 >gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 299 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens SBW25] gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25] Length = 298 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297 >gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum magneticum AMB-1] gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 314 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL+ GGDLR+IQ +LGHS LSTTQ YT V++ R+ +Y HP Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYTEVDAARLTRVYRDAHPRAK 313 >gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ HP Sbjct: 238 PVHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRAR 297 Query: 62 Q 62 + Sbjct: 298 K 298 >gi|294012827|ref|YP_003546287.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] gi|292676157|dbj|BAI97675.1| integrase/recombinase XerC [Sphingobium japonicum UT26S] Length = 298 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ ++++Y HP Sbjct: 241 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDVYRNAHPRA 298 >gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 305 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|163738332|ref|ZP_02145747.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388253|gb|EDQ12607.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 311 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +M++Y++ HP Sbjct: 253 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMDVYNRAHPKA 311 >gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] Length = 328 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQ Y V++ +M +Y++ HP Sbjct: 270 SATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYAAVDTAHLMAVYNRAHPKA 328 >gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] Length = 307 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL+NG D+R++Q +LGH+ LSTTQIYT++ ++ + E Y + Sbjct: 243 NIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDRAK 302 Query: 62 QKDKK 66 + + Sbjct: 303 IRHDE 307 >gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] Length = 369 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 46/63 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQ HP + Sbjct: 280 VHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAKVYDQAHPRAGR 339 Query: 63 KDK 65 K Sbjct: 340 ASK 342 >gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] Length = 360 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+RS+Q +LGH+ ++TTQIYT++ + + ++ HP Sbjct: 303 ISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] Length = 298 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297 >gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20] gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20] Length = 299 Score = 113 bits (285), Expect = 6e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 241 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 299 >gi|332558273|ref|ZP_08412595.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N] gi|332275985|gb|EGJ21300.1| integrase/recombinase XerD [Rhodobacter sphaeroides WS8N] Length = 311 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLR IQ++LGH+ LSTT+IYT+V + E+ + HP Sbjct: 251 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKELVLKHHPLAR 310 Query: 62 Q 62 + Sbjct: 311 E 311 >gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V R+ ++ HP Sbjct: 240 VSPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQIYTHVAVDRLSQVVHANHPLAK 298 >gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis LMG 19424] gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 254 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 311 >gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont] Length = 303 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 43/64 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH LSTTQIYT+++ + + +YD HP + Sbjct: 240 IHPHKLRHSFATHLLESSGDLRAVQELLGHVNLSTTQIYTHLDFQHLASVYDAAHPRAKR 299 Query: 63 KDKK 66 + Sbjct: 300 GKSE 303 >gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] Length = 315 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T HTLRHSFATH+L+NG ++R++Q +LGH+ + TTQIYT+V R+ I+ Q HP Sbjct: 257 AVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTHVEHSRLKAIHKQCHPR 314 >gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2] gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2] Length = 314 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +RM + HP Sbjct: 255 VSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKAMVRDLHP 310 >gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] Length = 296 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLR++Q +LGH+ +STTQ YT V+ +M +IY HP Sbjct: 238 EITPHTLRHSFAAHLLENGADLRAVQELLGHADISTTQRYTKVSKVKMKDIYSNAHPRA 296 >gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37] gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37] Length = 298 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 242 SPHVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLKELHQEHHPRA 298 >gi|332665189|ref|YP_004447977.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] gi|332334003|gb|AEE51104.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] Length = 330 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 40/61 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RHSFATHLL G DL++IQ +LGH + TT+IYT++++ + E + HP + Sbjct: 270 VSPHTFRHSFATHLLEGGADLKAIQDMLGHESILTTEIYTHLDTDYLRETILRFHPRNRR 329 Query: 63 K 63 Sbjct: 330 N 330 >gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083] gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083] Length = 306 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLLS GGDLRSIQ +LGHS LSTTQ YT V++ R+ME+Y++ HP Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRSIQELLGHSSLSTTQAYTAVDTARLMEVYERAHPKA 306 >gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] Length = 302 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC BAA-1116] gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116] Length = 305 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 311 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 41/61 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RHSFATHLLS G D+R +Q +LGHS ++TTQIYT V + + ++Y HP Sbjct: 251 LDISPHTFRHSFATHLLSGGADVRVVQELLGHSSVATTQIYTLVTADTLRDMYTTAHPRA 310 Query: 61 T 61 Sbjct: 311 R 311 >gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82] gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1 str. NRG 857C] gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2] Length = 298 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD THP + Sbjct: 237 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDATHPRAKR 296 >gi|332534749|ref|ZP_08410577.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] Length = 308 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ + HP Sbjct: 250 PLSPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHPRA 308 >gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 304 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQIYT+V+ +R+ +++Q HP Sbjct: 249 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQIYTHVSVERLRAVHNQAHPRA 304 >gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] Length = 307 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 251 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRMLHEQHHPR 306 >gi|332521441|ref|ZP_08397895.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 298 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + ++ HP Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDKSHLKDVMQSYHPR 297 >gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 297 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS] gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS] Length = 307 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 41/62 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL G DLR +Q +LGHS LSTTQIYT+V + ++Y +HP Sbjct: 238 VHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAKP 297 Query: 63 KD 64 ++ Sbjct: 298 QN 299 >gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395] gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395] gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395] gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4] Length = 302 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] Length = 299 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzicola BLS256] Length = 345 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 281 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 340 Query: 63 KD 64 K Sbjct: 341 KK 342 >gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] Length = 294 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + ++ ++Y +THP Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 249 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G +R +Q +LGH+ + TTQIYT V + E+Y HP Sbjct: 174 VSPHTLRHSFATHLLEGGASVRDVQELLGHASVQTTQIYTRVTVAALREVYWTAHPRARG 233 Query: 63 K 63 + Sbjct: 234 R 234 >gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] Length = 317 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD HP Sbjct: 255 SVHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAK 314 Query: 62 QKD 64 +K Sbjct: 315 RKP 317 >gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587] gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587] Length = 302 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126] gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126] Length = 299 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + HP Sbjct: 241 NVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLSQTLKEFHPRA 299 >gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] Length = 294 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGHS +S+TQIY + ++ ++Y +THP Sbjct: 237 ITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str. 'morsitans'] gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 303 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + G+LR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGNLRAVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 300 Query: 63 KD 64 + Sbjct: 301 EK 302 >gi|241206577|ref|YP_002977673.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860467|gb|ACS58134.1| tyrosine recombinase XerD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 317 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 312 Query: 63 KDK 65 K Sbjct: 313 AKK 315 >gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] Length = 335 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRH+FATHLL G DLR+IQ ++GH+ LS TQ YT+++ + + ++YD HP Sbjct: 259 SVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQALAKVYDAAHPRAQ 318 Query: 62 QK 63 ++ Sbjct: 319 RR 320 >gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13] gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13] Length = 295 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + DLR++Q +LGHS +STTQIYT+++ + + +IYDQ HP Sbjct: 232 NIHPHLLRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSK 291 Query: 62 QK 63 +K Sbjct: 292 KK 293 >gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] Length = 323 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 49/66 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ E+ + HP Sbjct: 249 KVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRELVQEHHPLAV 308 Query: 62 QKDKKN 67 +K+ Sbjct: 309 ASRRKS 314 >gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 299 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] Length = 300 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS+A+HLL D+R++Q +LGHS LSTTQIYT ++ + + +YD+ HP +K Sbjct: 239 SPHMLRHSYASHLLQASRDIRAVQELLGHSNLSTTQIYTKLDLEHLAAVYDEAHPRAKRK 298 Query: 64 DK 65 + Sbjct: 299 KE 300 >gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] Length = 306 Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+RS+Q +LGH+ + TTQIYT+V+ ++E Y HP Sbjct: 247 PIHPHTLRHSFATHLIQGGADVRSVQELLGHASVQTTQIYTHVSPDSLIEAYAMAHPRAR 306 >gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] Length = 299 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299 >gi|256371427|ref|YP_003109251.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008011|gb|ACU53578.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 332 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 47/64 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL +G D+RSIQ +LGH+RL+TT+IYT+V+ + + +YD THP Sbjct: 268 LDVHPHQLRHAFATHLLDHGADVRSIQELLGHARLATTEIYTHVSRETLTRVYDATHPRA 327 Query: 61 TQKD 64 + + Sbjct: 328 GRGE 331 >gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] Length = 303 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT++ +R+ +++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIARERLKQLHAKHHPR 302 >gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ +R+ ++ Q HP Sbjct: 239 SVGPHALRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVERLRAVHRQAHPRA 297 >gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens TA208] gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 305 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 301 Query: 61 TQKD 64 +++ Sbjct: 302 FKEN 305 >gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] Length = 298 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 HT+RHSFATHLL+ G D+R++Q +LGH L+TTQ+YT+++ + ++Y +THP Sbjct: 240 KIHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTHISKNHLKKVYMKTHPR 297 >gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1] gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1] Length = 298 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297 >gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] Length = 307 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ E+ + HP Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHPLAR 306 Query: 62 Q 62 + Sbjct: 307 K 307 >gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] Length = 307 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH+ RHSFATHLL G DLR +Q +LGHS ++TTQIYT+V ++R+ E DQ HP +K Sbjct: 246 SAHSFRHSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRRLKEAIDQYHPRSVKK 305 Query: 64 DK 65 +K Sbjct: 306 EK 307 >gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 306 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + +YD+ HP Sbjct: 245 KVSPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLANVYDEAHPRAH 304 Query: 62 QK 63 +K Sbjct: 305 KK 306 >gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617] Length = 297 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|312195601|ref|YP_004015662.1| integrase family protein [Frankia sp. EuI1c] gi|311226937|gb|ADP79792.1| integrase family protein [Frankia sp. EuI1c] Length = 422 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 38/57 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFA HLL G D+R +Q +LGH+ + TTQIYT V + ++ E+Y HP Sbjct: 330 VSPHVLRHSFALHLLDGGADVRVVQELLGHASVRTTQIYTLVPADQLREVYAAAHPR 386 >gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens FZB42] gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42] Length = 305 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 301 Query: 61 TQKD 64 +++ Sbjct: 302 FKEN 305 >gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16] gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16] Length = 312 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ Q HP Sbjct: 254 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQQHHPR 311 >gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 311 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 310 >gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] Length = 307 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L+TTQ+YT V+ R+M++Y HP Sbjct: 249 TATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYTAVDQARLMQVYQAAHPRA 307 >gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3] gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3] Length = 298 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LS+TQIYT++ R+ E++ HP Sbjct: 241 ISPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLKELHKMHHPRA 298 >gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2] gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2] Length = 313 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLR IQ++LGH+ ++TT+IYT+V + + ++ HP Sbjct: 250 KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADIATTEIYTHVLDEHLKDLVLTHHPLAK 309 Query: 62 QKD 64 ++ Sbjct: 310 PRN 312 >gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] Length = 305 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RH ATHLL G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHPRA 305 >gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] Length = 312 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V ++R+ ++ Q HP Sbjct: 252 SISPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLHALHRQFHPRSQ 311 >gi|260464185|ref|ZP_05812378.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] gi|259029988|gb|EEW31271.1| tyrosine recombinase XerC [Mesorhizobium opportunistum WSM2075] Length = 312 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL GGDLR+IQ +LGH+ LSTTQIYT V++ R++EIY+ HP Sbjct: 254 TATPHALRHSFATHLLGRGGDLRTIQELLGHASLSTTQIYTGVDTTRLLEIYESAHPRA 312 >gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM 4136] Length = 297 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFATHLL NG DLR IQ +LGH+ ++TTQIYT+V+ KR+ + + + HP Sbjct: 242 PHLLRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTHVDQKRLKDTHRKFHPR 296 >gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25] gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25] Length = 305 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM 265] gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265] Length = 325 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL++G DL+S+ +LGHS LSTT+IYT+V+ +R+ E+Y + HP Sbjct: 270 PHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTHVSFERLKEVYRKAHPKA 325 >gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1] gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1] Length = 253 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHL+ G DLR++Q++LGH+ L+TTQIYT+VNS R+ +YD+ HP Sbjct: 180 PISPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTHVNSARLRAVYDEHHPR 237 >gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] Length = 286 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 47/59 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR++Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 227 VPLSPHTLRHAFATHLLNHGADLRAVQLLLGHADISTTQIYTHVARERLKQLHARHHPR 285 >gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] Length = 308 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307 >gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661] gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661] Length = 297 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 276 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL G D+R +Q +LGHS ++TTQIYT V + + E++ +HP + Sbjct: 218 PVNPHALRHSFATHLLQGGADVRVVQELLGHSSVATTQIYTKVTADHLREMWATSHPRV 276 >gi|218885871|ref|YP_002435192.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756825|gb|ACL07724.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 371 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL G DLRS+Q +LGH+RLSTTQ YT++ R++++YD+ HP Sbjct: 276 AISPHGLRHSFATHLLEAGADLRSVQELLGHARLSTTQRYTHLTLSRLVDVYDRAHPR 333 >gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium] Length = 323 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IYT+++ + +I + HP Sbjct: 265 KISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYTHIDKSHLTQIINNFHPR 322 >gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 298 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHLL NG DLR+IQ +LGH ++TT++Y +++ K + ++ + HP Sbjct: 240 TISPHTLRHSFATHLLENGADLRAIQQMLGHESITTTEVYVHIDRKHLSQVIENYHPR 297 >gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] Length = 310 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL+ G D+R +Q +LGH+ ++TTQIYT V M E+Y +HP Sbjct: 253 SPHTLRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTPDTMREVYAASHPRAR 310 >gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 300 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 48/63 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H+ RHSFATH+L +G DLR+IQS+LGHS LSTTQ YT++N +++IYD+ HP Sbjct: 238 LDFSPHSFRHSFATHMLESGADLRTIQSLLGHSSLSTTQKYTHLNLSDILKIYDEAHPFA 297 Query: 61 TQK 63 ++ Sbjct: 298 RKR 300 >gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 307 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFAT LL+N D+R +Q +LGHS +STTQ+YT+V+ + EIY + HP Sbjct: 246 EVTPHVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLAD 305 Query: 62 QK 63 + Sbjct: 306 ED 307 >gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum DSM 273] gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum DSM 273] Length = 341 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRH+FATHLL+ G DL+S+ +LGHS LSTT+IYT+V +R+ E+Y + HP Sbjct: 286 PHTLRHTFATHLLNGGADLQSVSEMLGHSNLSTTEIYTHVTFERLREVYRKAHPKA 341 >gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] Length = 305 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHPRGK 304 >gi|189499552|ref|YP_001959022.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494993|gb|ACE03541.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 330 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATH+L+NG DL+S+ +LGH+ L+TT+IYT+V R+ E+YD+ HP Sbjct: 275 PHALRHSFATHMLNNGADLKSVSEMLGHANLTTTEIYTHVTFGRVREVYDKAHPRA 330 >gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula baltica WH47] Length = 317 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V R+ ++ HP Sbjct: 259 EISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 317 >gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA] gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA] Length = 295 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 45/60 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRKK 295 >gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] Length = 306 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+YD+THP Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMEVYDRTHPKA 306 >gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila L48] gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 298 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297 >gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] Length = 298 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ HP Sbjct: 240 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHPR 297 >gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10] Length = 308 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 246 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 305 >gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 308 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307 >gi|259417214|ref|ZP_05741133.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] gi|259346120|gb|EEW57934.1| site-specific tyrosine recombinase XerC [Silicibacter sp. TrichCH4B] Length = 311 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ +ME+Y ++HP Sbjct: 253 TATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYTAVDTAHLMEVYARSHPKA 311 >gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] Length = 299 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola CNS-205] gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205] Length = 345 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQ+YT V +R+ E+Y HP Sbjct: 285 AVSPHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYTMVTVQRLREVYATAHPRA 343 >gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4] gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4] Length = 297 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + DLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 233 VHPHKLRHSFATHMLESSADLRAVQELLGHANLSTTQVYTSLDFQHLAKVYDGAHPRAKK 292 Query: 63 K 63 + Sbjct: 293 R 293 >gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] Length = 311 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 46/63 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+HLL+NG DLR++Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 249 PHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQNHHPLAKQAK 308 Query: 65 KKN 67 K++ Sbjct: 309 KQD 311 >gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] Length = 306 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++ Q HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVARARLQQLHQQHHPR 305 >gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] Length = 295 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H+LRHSFATHLL NG DLRS+Q +LGH+ LS+TQIYT+V +R+ +++ HP Sbjct: 237 SISPHSLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERLKQLHQDIHPR 294 >gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2] gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2] Length = 305 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP + Sbjct: 244 IHPHKLRHSFASHMLESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 303 Query: 63 K 63 + Sbjct: 304 Q 304 >gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] Length = 318 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 44/64 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+FATHLL G DLR IQ++LGH+ LSTT+IYT+V +R+ ++ HP + Sbjct: 254 VTPHVLRHAFATHLLQGGADLRVIQTLLGHADLSTTEIYTHVLEERLKDLVLGHHPLARR 313 Query: 63 KDKK 66 D + Sbjct: 314 ADPQ 317 >gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 310 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHL+ G DLRSIQ +LGH LSTTQ YT V+ R+M +YD+ HP Sbjct: 249 ISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRAHPKAR 307 >gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] Length = 300 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL G DLRS+Q +LGH +LS+TQIYT++ +++ E+Y Q+HP Sbjct: 242 PHMLRHTFATHLLDGGADLRSVQELLGHKKLSSTQIYTHLTREKLREVYRQSHPRAK 298 >gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 314 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATH+L G DLRS+Q +LGH LS+TQIYT+V + + ++Y +THP Sbjct: 255 KVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRAK 314 >gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 283 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 342 Query: 63 KD 64 K Sbjct: 343 KK 344 >gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 310 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y + HP Sbjct: 252 EIHPHKLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRKFHPRA 310 >gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] Length = 301 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 40/57 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHLL G D+R +Q +LGH+ +STTQIYT V ++ E+Y +HP Sbjct: 245 PHTLRHSFATHLLDGGADIRVVQELLGHAAVSTTQIYTLVTVDKLREVYATSHPRAR 301 >gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836] gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836] Length = 312 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+ ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V+S+R+ Y+Q HP Sbjct: 256 SPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERLRSAYEQAHPRA 312 >gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2] gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1] gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3] gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08] Length = 306 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADIRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|313607900|gb|EFR84054.1| tyrosine recombinase XerD [Listeria monocytogenes FSL F2-208] Length = 75 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 17 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 75 >gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 298 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL G DLRS+Q +LGH++LS+TQIYT++ +R+ E+Y+Q HP + Sbjct: 239 HPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297 >gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688] gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688] Length = 298 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ HP Sbjct: 240 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKQLHAMHHPR 297 >gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302 >gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] Length = 300 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 49/63 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH+FA+HLL + GDLR++Q +LGH+ +STTQIYT+++ + + ++YDQTHP Sbjct: 237 VAIHPHRLRHAFASHLLESSGDLRAVQELLGHADISTTQIYTHLDFQHLAKVYDQTHPRA 296 Query: 61 TQK 63 +K Sbjct: 297 RKK 299 >gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] Length = 309 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT++ +R+ + HP + Sbjct: 249 ISPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHILDERLKSMVRDLHPLADE 308 Query: 63 K 63 + Sbjct: 309 R 309 >gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] Length = 328 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 47/66 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ HP Sbjct: 252 KVTPHTLRHAFATHLLANGADLRAIQTLLGHADIATTEIYTHVLEARLQELVMDHHPLSK 311 Query: 62 QKDKKN 67 + K + Sbjct: 312 TRRKTD 317 >gi|85711580|ref|ZP_01042638.1| Site-specific recombinase XerC [Idiomarina baltica OS145] gi|85694732|gb|EAQ32672.1| Site-specific recombinase XerC [Idiomarina baltica OS145] Length = 302 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 48/64 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+ E+YD HP T Sbjct: 237 NLHPHKLRHSFASHMLESSGDLRAVQELLGHANLSTTQVYTHLDFKRLAEVYDSAHPRAT 296 Query: 62 QKDK 65 + K Sbjct: 297 KGKK 300 >gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] Length = 327 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 269 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPR 326 >gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 319 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 45/65 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 255 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLHQLVQMHHPLAKQ 314 Query: 63 KDKKN 67 K+ Sbjct: 315 GKKQE 319 >gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] Length = 308 Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q ILGHS L+TTQIYT+V+ +R+ + Y Q HP Sbjct: 253 PHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQAHPRA 308 >gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016] Length = 307 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 251 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 307 >gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 308 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 250 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 307 >gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] Length = 304 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ I+ Q HP Sbjct: 248 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKNIHSQHHPRA 304 >gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016] gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] Length = 305 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] Length = 321 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++++ HP Sbjct: 265 SPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTRLADLHEKHHPR 320 >gi|332290936|ref|YP_004429545.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + + +Q HP Sbjct: 240 SISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRSDLARVMEQYHPR 297 >gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] Length = 317 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 50/67 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ +R+ ++YD HP Sbjct: 250 VSVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQRLAQVYDAAHPRA 309 Query: 61 TQKDKKN 67 K++KN Sbjct: 310 KTKNEKN 316 >gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] Length = 295 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V +R+ +I+ + HP Sbjct: 237 PMSPHILRHAFATHLINHGADLRVVQMLLGHTDISTTQIYTHVARERLKKIHQEHHPR 294 >gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000] gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus NA1000] Length = 305 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR IQ++LGH+ ++TTQIYT+V + + I HP Sbjct: 243 KVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLGR 302 Query: 62 QK 63 +K Sbjct: 303 KK 304 >gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15] Length = 300 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHPR 299 >gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] Length = 296 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + ++YD HP +K Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLADVYDSAHPRAKRKK 296 >gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39] gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39] Length = 292 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHL+ G DLR++Q +LGHS ++TT+IYT+++ + E+ H Sbjct: 234 NISPHTFRHSFATHLIEGGADLRAVQEMLGHSSITTTEIYTHLDRNYLKEVVTTFHNR 291 >gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265] gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265] Length = 306 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RH+FATHLL G DLR++Q +LGHS + TQIY++++ + E++ HP Sbjct: 248 TVSPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYSHIDRSFVKEVHRSFHPR 305 >gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037] gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037] Length = 301 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLRS+Q ILGH+ L TTQIYT+V+ +R+ E Y HP Sbjct: 246 PHALRHSAATHLLDGGADLRSVQEILGHASLGTTQIYTHVSGERLREAYRLAHPRA 301 >gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4] gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4] Length = 328 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP + Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313 Query: 63 KDK 65 D+ Sbjct: 314 GDQ 316 >gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp] gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAKHHPR 297 >gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 305 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar Microtus str. 91001] gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua] gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516] gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides F] gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10] gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola] gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1] gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92] gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516] gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua] gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92] gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F] gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola] gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004] gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038] gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300 >gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] Length = 319 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRH+ ATHLL+ G DLR +Q +LGHS L++TQ+YT+V+++R+ + Y Q HP Sbjct: 264 PHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQVYTHVSTERLAQSYRQAHPRA 319 >gi|258653281|ref|YP_003202437.1| integrase [Nakamurella multipartita DSM 44233] gi|258556506|gb|ACV79448.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 336 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q +LGH+ L+TTQIYT+V+++R+ IY Q HP Sbjct: 278 EIAPHGLRHTAATHLLEGGADLRTVQELLGHASLATTQIYTHVSTERLAAIYRQAHPRA 336 >gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] Length = 307 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 247 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLTQLVESAHPLAK 306 Query: 62 Q 62 + Sbjct: 307 R 307 >gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri A1501] gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++ R+ E++ HP Sbjct: 241 ISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHPR 297 >gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum R] gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R] Length = 315 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+ ATHLL G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 315 >gi|86742264|ref|YP_482664.1| phage integrase [Frankia sp. CcI3] gi|86569126|gb|ABD12935.1| tyrosine recombinase XerC subunit [Frankia sp. CcI3] Length = 385 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATH+L G DLRS+Q LGH+ L+TTQIYT+V +R+ ++Q HP Sbjct: 329 TPHGLRHSAATHMLEGGADLRSVQEFLGHASLATTQIYTHVTPERLRAAFEQAHPRA 385 >gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 295 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 47/59 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFATHLL G DLRS+Q++LGH+ +++TQIYT+V+ + +++++ + HP Sbjct: 236 IKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPR 294 >gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110] gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110] Length = 303 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 45/59 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL+ G DLR++Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 244 VPLSPHTLRHAFATHLLNRGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAQHHPR 302 >gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 301 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T+ HTLRHSFATH+L G D+R +Q +LGH L+TTQ+YT+V ++R+ + Y + HP Sbjct: 244 TSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYTHVTTQRLQQSYQKAHPRA 301 >gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf0-1] gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 43/66 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHPRAK 292 Query: 62 QKDKKN 67 + + Sbjct: 293 RMKGDD 298 >gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297 >gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703] Length = 303 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300 >gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] Length = 291 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 230 VHPHMLRHSFASHVLESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 289 Query: 63 KD 64 K Sbjct: 290 KS 291 >gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] Length = 278 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +S T H LRHSFATH+L G D+R IQ ILGHS LSTTQIYT V + + + ++ Sbjct: 215 VSVTPHMLRHSFATHMLERGVDIRVIQEILGHSSLSTTQIYTKVTVEHLKKAQEKA 270 >gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+ R+ Y HP Sbjct: 254 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQRYTQVDEARLTRAYRDAHPRAK 313 >gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328 Query: 63 K 63 K Sbjct: 329 K 329 >gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 TLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297 >gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] Length = 311 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y THP Sbjct: 251 PVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATTHPRA 309 >gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, [Edwardsiella ictaluri 93-146] gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299 >gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] Length = 295 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQ HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQAHPRAKRKK 295 >gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] Length = 308 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 249 VPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAIHHPR 307 >gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 323 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 ++ + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 264 VTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 305 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|94495392|ref|ZP_01301972.1| phage integrase [Sphingomonas sp. SKA58] gi|94424780|gb|EAT09801.1| phage integrase [Sphingomonas sp. SKA58] Length = 312 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ +++IY HP Sbjct: 255 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQIYTQVDAAHLLDIYRNAHPRA 312 >gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619] gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297 >gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR] gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR] Length = 300 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ LSTTQ+YT+++ KR+ +YD HP +K Sbjct: 239 HPHKLRHSFASHMLESSGDLRAVQEMLGHANLSTTQVYTHLDFKRLASVYDSAHPRARKK 298 Query: 64 D 64 Sbjct: 299 S 299 >gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL NG DLR IQ ILGH ++TT+IY +V+ + E+ + HP Sbjct: 240 KISPHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVHVDKTYLKEVVETFHPR 297 >gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQIYT+++ ++E Y + HP T Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQIYTHLDYNSVIENYREFHPQTT 306 Query: 62 QKD 64 +K Sbjct: 307 KKS 309 >gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300 >gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193] gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193] Length = 328 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ Q HP Sbjct: 252 KVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLQHHPLSR 311 Query: 62 QKDKKN 67 + + + Sbjct: 312 EGEARQ 317 >gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Boryong] gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong] Length = 309 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFA+HLL G DL+ IQ +LGH +S+TQIYT+V +R+ + ++ HP+ Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM 4166] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT++ R+ E++ HP Sbjct: 241 ISPHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHATHHPR 297 >gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQIYT+++ + + +YDQ HP +K Sbjct: 235 HPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLANVYDQAHPRAKRK 294 >gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] Length = 300 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|87200080|ref|YP_497337.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135761|gb|ABD26503.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 297 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ ++++Y HP Sbjct: 239 TATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTRVDAATLLDVYRNAHPRA 297 >gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 308 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS+A+HLL +G +R+IQ +LGHS L+ TQIYT ++ R+ E+YD+ HP + Sbjct: 247 ISPHMLRHSYASHLLQSGAGIRAIQELLGHSDLAATQIYTKLDFARLAEVYDRAHPRAKR 306 Query: 63 KD 64 + Sbjct: 307 QK 308 >gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 46/63 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +YDQ HP + Sbjct: 242 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAAVYDQAHPRAKR 301 Query: 63 KDK 65 K + Sbjct: 302 KPE 304 >gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] Length = 295 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YD HP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDSAHPRAKRKK 295 >gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S HTLRHS+ATHLL G D+R++Q +LGH+ ++TTQIYT V+ + E+Y +HP Sbjct: 268 SVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPRA 326 >gi|114798167|ref|YP_761981.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] gi|114738341|gb|ABI76466.1| putative tyrosine recombinase XerC [Hyphomonas neptunium ATCC 15444] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRH+FATHLL+NG DLR+IQ++LGH+ LSTTQ+YT ++S R+ E++ HP Sbjct: 241 TATPHALRHAFATHLLANGADLRAIQTLLGHASLSTTQVYTGIDSSRLREVHAAAHPRA 299 >gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] Length = 320 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL+ G DLRS+Q +LGH+ ++TTQIYT+++++R+ ++Y HP Sbjct: 255 KMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRAQ 314 >gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B] gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B] Length = 305 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis 12822] gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis] Length = 310 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERLKALHAAHHPRA 310 >gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism] Length = 323 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM + + Q HP Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKLRMKQQHAQHHPR 322 >gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGHS ++TTQIYT+++ + + ++YD HP + Sbjct: 241 VHPHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRARR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] Length = 316 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 44/66 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ R+ + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNRLRSEIIEHHPRNI 307 Query: 62 QKDKKN 67 + K++ Sbjct: 308 KYRKEH 313 >gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae NTUH-K2044] gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N] gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N] Length = 314 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 256 PLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAHHPRA 314 >gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297 >gi|238063317|ref|ZP_04608026.1| phage integrase [Micromonospora sp. ATCC 39149] gi|237885128|gb|EEP73956.1| phage integrase [Micromonospora sp. ATCC 39149] Length = 340 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHS ATHLL G DLR++Q +LGHS L++TQIYT+V+ +R+ Y Q HP Sbjct: 283 TTPHGLRHSAATHLLEGGADLRAVQELLGHSSLASTQIYTHVSVERLRAAYRQAHPRA 340 >gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3] gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus horikoshii OT3] Length = 285 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 ++ T H LRHSFATH+L G D+R IQ +LGH+ LSTTQIYT V +K + E ++ Sbjct: 221 LNVTPHQLRHSFATHMLERGVDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKA 276 >gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 240 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297 >gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299 >gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans LB400] gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia xenovorans LB400] Length = 311 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 310 >gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 32953] gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 300 >gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297 >gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302 >gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii ATCC 12478] Length = 313 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP T Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAT 313 >gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] Length = 296 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHL+++G DLR +Q +LGHS +STTQIYT+V +R+ +++Q HP Sbjct: 238 PVSPHTLRHAFATHLVNHGADLRVVQLLLGHSDISTTQIYTHVARERLRRLHEQHHPR 295 >gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] Length = 296 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+ ATHLL G DLR +Q +LGHS L TTQIYT+V+S+R++E + Q HP Sbjct: 240 SPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 296 >gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia succiniciproducens MBEL55E] gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 240 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKYHPR 297 >gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440] gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1] gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440] gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1] Length = 298 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPR 297 >gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 299 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] Length = 263 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260 >gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] Length = 326 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRHSFATHLL++G DLR++Q +LGH+ LSTTQIYT V + + ++ + HP Sbjct: 268 TVTPHGLRHSFATHLLNHGADLRALQLLLGHASLSTTQIYTLVAREHLQRLHARHHPR 325 >gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44] gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44] Length = 348 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP + Sbjct: 270 VHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHPRAQR 329 >gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10] Length = 311 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 49/62 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY +V S R++ IYD THP Sbjct: 250 TATPHALRHAFATHLLAHGGDLRAIQELLGHASLSTTQIYADVESARLLSIYDGTHPRAR 309 Query: 62 QK 63 ++ Sbjct: 310 RR 311 >gi|90421041|ref|ZP_01228944.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] gi|90334676|gb|EAS48453.1| tyrosine recombinase XerC [Aurantimonas manganoxydans SI85-9A1] Length = 319 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+ R+M IY+ HP Sbjct: 255 SATPHALRHSFATHLLAGGGDLRTIQDLLGHASLSTTQNYTAVDQARLMSIYEDAHPRAR 314 Query: 62 QK 63 ++ Sbjct: 315 RR 316 >gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 327 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 269 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPR 326 >gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] Length = 263 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260 >gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] Length = 307 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 40/61 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RHSFATH+L NG DLR +Q +LGH L TTQIYT+V R+ ++ D+ HP Sbjct: 244 IHIHPHMIRHSFATHMLDNGADLRIVQELLGHENLGTTQIYTHVTQDRLRKVVDEAHPHS 303 Query: 61 T 61 Sbjct: 304 K 304 >gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] Length = 305 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 44/64 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LSN DLR++Q +LGHS LSTTQIYT+V+ + +IYDQ HP Sbjct: 241 VDLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTHVDFDHLAQIYDQAHPRA 300 Query: 61 TQKD 64 K Sbjct: 301 QHKK 304 >gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 311 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+FAT LL+ G D+R++Q +LGHS LS+TQ+Y +V+ R+ E+Y HP Sbjct: 251 AITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVSRDRLKEVYRNAHPHAK 310 Query: 62 Q 62 + Sbjct: 311 K 311 >gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893] gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893] Length = 310 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ HP Sbjct: 254 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARQRLQSLHQAHHPR 309 >gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] Length = 299 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] Length = 306 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 248 NISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFIREVHKTFHPRA 306 >gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 263 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H+LRHSFATHLL G LR +Q +LGH L+TTQ Y + ++ + + Y+ HP Sbjct: 202 VTPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRYLRITAQHLKKSYESAHPRA 259 >gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM 12804] gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii] Length = 310 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 252 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA 310 >gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] Length = 294 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T +TLRHSFATHL+ NG DL+S+Q +LGH+ +STTQIY V R+ E+Y++THP Sbjct: 236 SITPNTLRHSFATHLIQNGADLKSVQEMLGHADISTTQIYAYVMKNRIKEVYNKTHPRA 294 >gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1] Length = 325 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATHLL+ G DLR +Q +LGH+ + TTQIYT+V R+ ++ HP Sbjct: 267 EISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] Length = 298 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+LRHSFATHLLS G DLR+IQ +LGHS LSTT+ YT+++ + + E Y + HP + Sbjct: 240 SPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRSKE 298 >gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGQHHPRA 299 >gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60] Length = 299 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299 >gi|332704250|ref|ZP_08424338.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] gi|332554399|gb|EGJ51443.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] Length = 313 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HTLRHSFA+HLL +G LRS+Q +LGH RL+TTQ YT++N ++ YD HP Sbjct: 250 SISPHTLRHSFASHLLQSGAGLRSVQELLGHKRLTTTQRYTHLNLAQITRAYDAAHPRSK 309 Query: 62 QKD 64 +KD Sbjct: 310 KKD 312 >gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL+NG DLR IQ +LGH+ +S+T YT V+S + E + + HP Sbjct: 245 TISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPKWK 304 >gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032] Length = 315 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+ ATHLL G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP Sbjct: 259 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 315 >gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus] gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 300 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RHSFATHLL G D+RSIQ +LGHS LSTTQ YT V +++ ++YD HP Sbjct: 242 KVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHPRA 300 >gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] Length = 311 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 310 >gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG] gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG] Length = 292 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] Length = 305 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] Length = 296 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + ++YD HP +K Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHSHLSTTQIYTHLNFQHLADVYDAAHPRAKRKK 296 >gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22] gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22] Length = 298 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] Length = 299 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] Length = 316 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP + Sbjct: 255 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 314 Query: 63 KD 64 K Sbjct: 315 KK 316 >gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] Length = 299 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 317 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+++ + ++E Y +HP Sbjct: 258 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHISPENLIETYLMSHPRAR 317 >gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus 10329] Length = 305 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 304 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 42/55 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS ATHLL G DLR +Q ILGHS L+TTQIYT+V+ +R+ ++++Q HP Sbjct: 249 PHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLRKVHEQAHPR 303 >gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 296 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP + Sbjct: 235 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAKR 294 Query: 63 KD 64 K Sbjct: 295 KS 296 >gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATHL+ G DLR+IQ +LGH+ LSTTQ YT + R+ME++ + HP + Sbjct: 262 ATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLMEVWTRAHPRAAR 321 >gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] Length = 263 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260 >gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Ikeda] gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda] Length = 309 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFA+HLL G DL+ IQ +LGH +S+TQIYT+V +R+ + ++ HP+ Sbjct: 247 NVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTHVQPERLKHVIEKYHPASL 306 Query: 62 QK 63 +K Sbjct: 307 KK 308 >gi|188583991|ref|YP_001927436.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] gi|179347489|gb|ACB82901.1| tyrosine recombinase XerC [Methylobacterium populi BJ001] Length = 367 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325 Query: 62 Q 62 + Sbjct: 326 R 326 >gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155] gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155] Length = 309 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 308 >gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 301 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPRSR 298 Query: 62 QK 63 + Sbjct: 299 PR 300 >gi|94268395|ref|ZP_01291163.1| Phage integrase [delta proteobacterium MLMS-1] gi|93451622|gb|EAT02417.1| Phage integrase [delta proteobacterium MLMS-1] Length = 177 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR +Q +LGH+ LSTTQ YT++N + +YDQ HP Sbjct: 118 VSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 175 >gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134] gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134] Length = 339 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 45/60 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ ++TTQIYT+++ + + ++YD+ HP + Sbjct: 264 VHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYTSLDFQHLAKVYDKAHPRAGR 323 >gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS] gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS] Length = 303 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 45/59 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ +++ HP Sbjct: 244 VPLSPHTLRHAFATHLLNHGVDLRAVQLLLGHADISTTTIYTHVARERLKQLHAAHHPR 302 >gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] Length = 295 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 45/60 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + E+YDQTHP +K Sbjct: 236 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEMYDQTHPRAKRKK 295 >gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 317 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ L++TQIYT ++S ++ YD+ HP Sbjct: 259 TATPHALRHSFATHLLAGGGDLRTIQELLGHASLASTQIYTEIDSAHLLAAYDKAHPR 316 >gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] Length = 298 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J] gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J] Length = 314 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 313 >gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] Length = 323 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHPR 322 >gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] Length = 263 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260 >gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] Length = 306 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y + HP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARAHPQ 303 >gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] Length = 298 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQEHHPRA 298 >gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185] gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185] Length = 309 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 308 >gi|289644810|ref|ZP_06476863.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289505366|gb|EFD26412.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 404 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RHS ATHLL+ G DLRS+Q LGH+ +TTQIYT+V +R+ ++Q+HP Sbjct: 346 PISPHGIRHSAATHLLAGGADLRSVQEFLGHASPATTQIYTHVTPQRLRAAFEQSHPRA 404 >gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586] gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586] Length = 302 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195] gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195] Length = 309 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 308 >gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 508 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 449 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 507 >gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX] gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX] Length = 321 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHL+ G D+R +Q +LGH+ ++TTQ+YT V R+ E+Y HP Sbjct: 260 VSPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYAAAHPRAR 318 >gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] Length = 302 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51] gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 298 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL G DLRS+Q +LGH++LS+TQIYT++ +R+ E+Y+Q HP + Sbjct: 239 HPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297 >gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 255 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHPRAQ 313 >gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] Length = 301 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLR++Q +LGH+ LSTTQIYT+V +++ E Y + P T Sbjct: 240 KIHPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTHVTKEKLQESYRKFFPRST 299 Query: 62 Q 62 + Sbjct: 300 K 300 >gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLLS G D+R +Q +LGH+ ++TTQ+YT V + + E+Y Q+HP Sbjct: 258 ISPHTLRHSFATHLLSGGADVRVVQELLGHASVTTTQLYTMVTADSLREVYVQSHPRA 315 >gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] Length = 263 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 201 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 260 >gi|229186070|ref|ZP_04313240.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1] gi|228597489|gb|EEK55139.1| Tyrosine recombinase xerC [Bacillus cereus BGSC 6E1] Length = 130 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 71 MRISPHMLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 130 >gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS] gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS] Length = 317 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 43/66 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQIYT ++ + + + YD HP Sbjct: 251 PVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTRLDFQHLAKAYDAAHPRAK 310 Query: 62 QKDKKN 67 + K+ Sbjct: 311 ARTDKD 316 >gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] Length = 300 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 242 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHPRA 300 >gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ K + ++ HP Sbjct: 241 ISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEIYMHVDRKHLSQVMQTFHPRSK 299 >gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] Length = 314 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 314 >gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp. novicida GA99-3549] gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112] gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549] gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes KPA171202] gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202] gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1] gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1] gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2] gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2] gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1] gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1] gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1] gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2] gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1] gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2] gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1] gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2] gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1] gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1] gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1] gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4] gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1] gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3] gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3] gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1] gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1] gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1] gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2] gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1] gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1] gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1] gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1] gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2] gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1] gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2] gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3] gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2] gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1] gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3] gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1] gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1] gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2] gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1] gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1] gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2] gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3] gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1] gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2] gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1] gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2] gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2] gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3] gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2] gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1] gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2] gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1] gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1] gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1] Length = 306 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] Length = 294 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T HTLRHSFATHL+ NG DL+S+Q +LGHS +STTQ+Y + ++ ++Y++THP Sbjct: 236 SITPHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14] Length = 298 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330] gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330] Length = 314 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 314 >gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] Length = 334 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331 Query: 63 KDK 65 ++K Sbjct: 332 QEK 334 >gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10] gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar Microtus str. 91001] gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 32953] gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua] gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516] gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides F] gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola] gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92] gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10] gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516] gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua] gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92] gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F] gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola] gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004] gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038] gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 299 >gi|332653317|ref|ZP_08419062.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16] gi|332518463|gb|EGJ48066.1| tyrosine recombinase XerD [Ruminococcaceae bacterium D16] Length = 295 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRSIQ +LGH+ +S+TQIY+ + S+++ ++Y + HP Sbjct: 238 ITPHTLRHSFAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQKLKDVYHKAHPRA 295 >gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T] gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T] Length = 304 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 43/62 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+HLL + GDLR++Q +LGH+ + +TQIYT+++ + + +YD HP Sbjct: 243 VHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYTHLDFQHLAAVYDAAHPRA 302 Query: 61 TQ 62 + Sbjct: 303 RK 304 >gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548] gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548] Length = 292 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|332675806|gb|AEE72622.1| tyrosine recombinase XerD [Propionibacterium acnes 266] Length = 306 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes HL027PA2] Length = 331 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 274 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 330 >gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223] gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223] Length = 302 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C] Length = 321 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +TT H LRHSFATHLLS GGDLR+IQ +LGH+ LSTTQ+YT++++ ++EIY + HP Sbjct: 263 TTTPHALRHSFATHLLSRGGDLRTIQELLGHACLSTTQVYTHIDTNHLLEIYQKAHPRA 321 >gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031] Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 240 VEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010] gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010] Length = 302 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+H+L + GDLR++Q +LGHS +STTQIYT+V+ + + ++YD HP + Sbjct: 240 VHPHRLRHAFASHMLESSGDLRAVQELLGHSDISTTQIYTHVDFQHLAKVYDSAHPRAKK 299 Query: 63 KD 64 + Sbjct: 300 RS 301 >gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132] gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132] Length = 307 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HT RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R+ ++ + HP T Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLKTLHRKFHPRST 306 >gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] Length = 299 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 240 VEIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627] gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627] Length = 298 Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] Length = 301 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/60 (56%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRH+FATHLL N DLRSIQ +LGHS +STT IYT+V++ + +E Y + HP + Sbjct: 240 VTPHTLRHTFATHLLENDADLRSIQEMLGHSDISTTTIYTHVSNNKAIEEYRKLHPRSKK 299 >gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 294 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL G LR +Q +LGH L TTQ Y ++ S +M Y+Q HP Sbjct: 235 VTPHTLRHSFATHLLEGGASLRVVQELLGHESLLTTQRYLDITSDQMKRSYEQAHPRA 292 >gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] Length = 267 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 205 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 264 >gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894] Length = 311 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 253 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAK 311 >gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 314 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FAT +L+NG DLR++Q +LGH+ LSTTQIY +V + + + Y Q P T+ Sbjct: 243 IHPHMLRHTFATQMLNNGADLRTVQELLGHTSLSTTQIYAHVTKEHLQQDYRQFFPRATR 302 Query: 63 KDKKN 67 + K Sbjct: 303 ESTKE 307 >gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032] Length = 308 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+ ATHLL G DLR +Q +LGHS + TTQIYT+V++KR++E +++ HP Sbjct: 252 SPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct] Length = 327 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 261 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 317 >gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1] Length = 306 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 297 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 37/62 (59%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H+LRHSFATHLL G DLR+IQ +LGH LSTTQ YT V++ RMM+ YD+ HP Sbjct: 236 TATPHSLRHSFATHLLDEGADLRAIQEMLGHQSLSTTQKYTQVSTDRMMKEYDRAHPRSR 295 Query: 62 QK 63 +K Sbjct: 296 KK 297 >gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] Length = 299 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus] Length = 293 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 46/56 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y+Q H Sbjct: 237 TLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFH 292 >gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 43/65 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FATHLL G DLR+IQ++LGH+ L TT+IYT+V RM ++ HP Sbjct: 257 VSPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTRMRDLVLNHHPLAKG 316 Query: 63 KDKKN 67 + +N Sbjct: 317 RGDEN 321 >gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] Length = 340 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHS ATHLL G D+R +Q +LGH+ + TTQIYT V++ + E+Y HP Sbjct: 282 EISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHPRA 340 >gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] Length = 328 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP + Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313 Query: 63 KDK 65 D+ Sbjct: 314 GDQ 316 >gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D] gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D] Length = 298 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 240 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLRTLHAQHHPR 297 >gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] Length = 311 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 310 >gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2] gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3] gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4] gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2] gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1] Length = 306 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 298 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + + HP Sbjct: 246 KVSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHPLA 304 >gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] Length = 299 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+ ATHLL G DLR +Q +LGHS L TTQ+YT+V++KR+ + Y + HP Sbjct: 243 TPHGLRHTAATHLLEGGADLRVVQELLGHSSLQTTQVYTHVSAKRLKDAYSRAHPRA 299 >gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP] gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP] Length = 276 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 38/56 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATH+L NG D+R IQ ILGHS LSTTQIYT V + + ++ Sbjct: 213 IKVTPHMLRHSFATHMLENGIDIRVIQEILGHSNLSTTQIYTKVTVEHLRRAQEKA 268 >gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP + + Sbjct: 232 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKAMVRDLHPLMDR 291 >gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 304 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP + Sbjct: 242 INPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLTKVYDVAHPRAKR 301 >gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] Length = 309 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL G DLR++Q +LGH+ +STT+IYT+V +R+ + + HP Sbjct: 249 ISPHVLRHAFASHLLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKALVNTHHPLAKT 308 Query: 63 K 63 K Sbjct: 309 K 309 >gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 308 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FATHLLS G DLR++Q +LGH+ +STTQIYT+V + + ++ + HP Sbjct: 248 VTPHALRHAFATHLLSGGADLRAVQMLLGHADISTTQIYTHVMTDELQKLLEAAHP 303 >gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY] gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY] Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + +YD HP Sbjct: 261 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRAR 320 Query: 62 QKD 64 +K Sbjct: 321 RKP 323 >gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 240 VSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTLVTVDNLREVFATAHPRA 297 >gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 328 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 46/60 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FATHLL++G DLR+IQ +LGHS LSTTQ YT+V+ ++M++YD HP + Sbjct: 265 SPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRSRRD 324 >gi|213417883|ref|ZP_03350981.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 186 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 125 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 184 >gi|119896887|ref|YP_932100.1| site-specific recombinase [Azoarcus sp. BH72] gi|119669300|emb|CAL93213.1| site-specific recombinase [Azoarcus sp. BH72] Length = 303 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + IYD HP Sbjct: 242 VHVHPHMLRHSFASHLLQSSGDLRAVQELLGHSSIRSTQVYTHLDFQHLARIYDAAHPRA 301 Query: 61 TQ 62 + Sbjct: 302 RK 303 >gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + + HP Sbjct: 246 KISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHPLA 304 >gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355] Length = 301 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 239 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 298 Query: 63 KDK 65 ++K Sbjct: 299 QEK 301 >gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] Length = 298 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] Length = 308 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 45/65 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + + Y + HP + Sbjct: 242 VSPHVLRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRADR 301 Query: 63 KDKKN 67 K++ + Sbjct: 302 KEEDD 306 >gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1] Length = 348 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQIYT ++ + + + Y++ HP + Sbjct: 270 VHPHVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTRLDFQHLAQAYEKAHPRAQR 329 >gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] Length = 310 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ + HP Sbjct: 250 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDERLRELVLEHHPLAK 309 >gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS] gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS] Length = 318 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHPRAR 318 >gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS] gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS] gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS] gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS] Length = 318 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHALREVWAGAHPRAR 318 >gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 297 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH++ATHLL NG D+R +Q +LGH +STTQIYT+V+ +R+ +Y +HP Sbjct: 234 PFTPHVLRHTYATHLLDNGADIRLVQELLGHQSISTTQIYTHVSKERLAHVYAYSHPHGR 293 Query: 62 QKDK 65 ++D+ Sbjct: 294 KQDE 297 >gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] Length = 312 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ HP Sbjct: 249 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMHHPR 306 >gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium] Length = 320 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT ++ + + + YD HP Sbjct: 259 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLAQAYDAAHPRAR 318 Query: 62 QK 63 ++ Sbjct: 319 KR 320 >gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] Length = 328 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP + Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313 Query: 63 KDK 65 D+ Sbjct: 314 GDQ 316 >gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] Length = 329 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328 Query: 63 K 63 K Sbjct: 329 K 329 >gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHPRA 301 Query: 61 TQ 62 + Sbjct: 302 HK 303 >gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 298 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT] gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT] Length = 277 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 219 SLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKRLHQQHHPR 276 >gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580] Length = 304 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDMLRKTYMSHHPRA 300 Query: 61 TQ 62 + Sbjct: 301 HK 302 >gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum PRL2010] Length = 322 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 263 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHPRAR 322 >gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171] gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] Length = 322 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 263 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIEAYLTSHPRAR 322 >gi|239917444|ref|YP_002957002.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] gi|281414065|ref|ZP_06245807.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] gi|239838651|gb|ACS30448.1| tyrosine recombinase XerC subunit [Micrococcus luteus NCTC 2665] Length = 346 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q +LGH+ L TTQ+YT+V+ R+ E Y Q HP Sbjct: 291 PHALRHTAATHLLDGGADLRSVQELLGHASLRTTQVYTHVSIDRLREGYRQAHPRA 346 >gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] Length = 328 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP + Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADISTTQIYTHVLDERLKGMVRDLHPLNDR 313 Query: 63 KDK 65 D+ Sbjct: 314 GDQ 316 >gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] Length = 302 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302 >gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus HTA426] gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 289 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V R+ IY Q HP Sbjct: 231 NISPHVLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLRHIYLQAHPRA 289 >gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 47/59 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++ HP Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRAHPKA 306 >gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] Length = 276 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 214 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 273 >gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 260 KISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLHKLVTEHHP 316 >gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] Length = 304 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 43/64 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQIYT+V+ + + Y HP Sbjct: 241 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLRNTYMSHHPRA 300 Query: 61 TQKD 64 ++ Sbjct: 301 FKEK 304 >gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018] gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] Length = 335 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+S G D+R++Q +LGH+ ++TTQIYT+++ +ME Y +HP Sbjct: 278 HPHTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTHISPDALMEAYVMSHPRAR 335 >gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 324 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 42/59 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 M + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + ++ + HP Sbjct: 265 MRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQTLHRKHHPR 323 >gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPRA 301 Query: 61 TQKD 64 ++ Sbjct: 302 FKRS 305 >gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] Length = 299 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V +R+ + Y Q HP Sbjct: 242 IHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKERLQKNYRQFHPRA 299 >gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] Length = 342 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V R+ ++ Q HP Sbjct: 286 SPHTLRHAFATHLLNHGADLRVVQVLLGHADISTTQIYTHVARARLKALHAQHHPR 341 >gi|319948060|ref|ZP_08022234.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4] gi|319438299|gb|EFV93245.1| site-specific tyrosine recombinase XerC [Dietzia cinnamea P4] Length = 177 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATHLL G DLR +Q +LGHS +TTQIYT+V+++R+ Y HP Sbjct: 120 VSPHALRHSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAERLRAAYRGAHPRA 177 >gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp] gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp] Length = 315 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQIYT+++ + + +YDQ HP +K Sbjct: 252 HPHMLRHSFASHMLESSQDLRAVQELLGHADIATTQIYTHLDFQHLATVYDQAHPRAKRK 311 >gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti MAFF303099] gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + + HP Sbjct: 246 KISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDHHPLA 304 >gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 316 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 315 >gi|326387918|ref|ZP_08209524.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207964|gb|EGD58775.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 298 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 240 SATPHALRHSFATHLLGAGADLRSLQELLGHASLSSTQIYTKVDAARLLDVYRSAHPRA 298 >gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11] gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11] Length = 332 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 252 AVSPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLDARLSELVLEHHPLAR 311 >gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] Length = 312 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSF THL+ G D+R +Q +LGH+ ++TTQIYT + ++ M ++ HP Sbjct: 249 VKISPHTLRHSFGTHLIEGGADVRVVQELLGHASVTTTQIYTMITAENMRRVWAGAHPRA 308 >gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1] gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1] Length = 307 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y HP Sbjct: 249 TATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYANAHPKA 307 >gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ Q HP Sbjct: 249 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] Length = 309 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 46/59 (77%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 250 VPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKQLHSQHHPR 308 >gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] Length = 308 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTAHPRAR 308 >gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] Length = 303 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 245 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKALHAMHHPR 302 >gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + + + HP Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTHLDRDYLQQTLKEYHPRAK 299 >gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032] gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 305 Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLRS+Q +LGHS LS+TQ+YT+V+ + + Y HP Sbjct: 242 LHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPRA 301 Query: 61 TQKD 64 ++ Sbjct: 302 FKRS 305 >gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99] Length = 295 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT++ ++ +IY HP Sbjct: 239 TPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLYTHITKNQIRKIYQDYHPRA 295 >gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] Length = 295 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 46/56 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V +R+ +++ + HP Sbjct: 239 SPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVAKERLKQLHSEHHPR 294 >gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 313 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 38/59 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT + + E++ HP Sbjct: 254 VSPHVLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLITVNTLREVHATAHPRAR 312 >gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 318 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ +++ + HP T Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKQLHARHHPRGT 317 >gi|119385228|ref|YP_916284.1| site-specific tyrosine recombinase XerC [Paracoccus denitrificans PD1222] gi|119374995|gb|ABL70588.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 312 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ+YT V+ ++ +Y HP Sbjct: 254 TATPHALRHSFATHLLTAGGDLRTIQELLGHASLSTTQVYTGVDDAHLLAVYRAAHPRA 312 >gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 243 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHPR 300 >gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] Length = 300 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ +STTQIYT+++ + + +IYD HP Sbjct: 235 NIHPHLLRHSFASHLLQSSQDLRAVQELLGHANISTTQIYTHLDYQHLSKIYDDAHPRAK 294 Query: 62 QKDK 65 + ++ Sbjct: 295 KNNR 298 >gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132] gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132] Length = 296 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSFATHL+ G DLR++Q +LGH + TT+IYT+++ + + + HP Sbjct: 238 TISPHTLRHSFATHLVEGGADLRAVQEMLGHESILTTEIYTHLDRAFLQQTLREFHPRA 296 >gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 334 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331 Query: 63 KDK 65 ++K Sbjct: 332 QEK 334 >gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus WK1] gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RH+FATHLL+ G DLRS+Q +LGH+ LS+TQ+YT+V + +Y +HP Sbjct: 241 LKVSPHTFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDHLRYVYLHSHPRA 300 >gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica] Length = 303 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPR 302 >gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] Length = 332 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Q Sbjct: 254 VSPHVLRHAFASHLLQNGADLRIVQELLGHADVSTTQIYTHVLDERLKGMVRDLHPLNDQ 313 Query: 63 KD 64 D Sbjct: 314 SD 315 >gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217] gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217] Length = 323 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V R+ + + HP Sbjct: 249 KVTPHTLRHAFATHLLANGADLRVIQTLLGHADIATTEIYTHVLEARLQALVQEHHPLAQ 308 Query: 62 QKDKK 66 +K Sbjct: 309 AARRK 313 >gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 300 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 47/61 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 HTLRHSFATHLL G DLRS+Q +LGHS + TTQIYT+V++K++ + Y+Q H I K+ Sbjct: 240 HTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVDTKQLQKAYEQFHAGIHDKED 299 Query: 66 K 66 + Sbjct: 300 Q 300 >gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110] gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110] Length = 356 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 43/64 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP Sbjct: 260 PVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDAAHPRAQ 319 Query: 62 QKDK 65 + + Sbjct: 320 ARPE 323 >gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] Length = 329 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328 Query: 63 K 63 K Sbjct: 329 K 329 >gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] Length = 308 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERLKSMVRDLHPLA 306 >gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12] gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12] Length = 305 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 248 ISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 304 >gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] Length = 298 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHEQHHPR 297 >gi|189184773|ref|YP_001938558.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Ikeda] gi|189181544|dbj|BAG41324.1| integrase/recombinase XerC [Orientia tsutsugamushi str. Ikeda] Length = 312 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 36/65 (55%), Positives = 50/65 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S TAHT RH FA+HLL+NG DLRSIQ +LGH LS+TQIYT +NS + +Y+++HP + Sbjct: 247 SLTAHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTKINSDFLTSVYNKSHPLVR 306 Query: 62 QKDKK 66 +++ K Sbjct: 307 EQNNK 311 >gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] Length = 305 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++ Q HP Sbjct: 247 TLSPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHPR 304 >gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 329 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328 Query: 63 K 63 K Sbjct: 329 K 329 >gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 323 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 299 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638] gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638] Length = 298 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] Length = 302 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQIYT+V+ ++ E+Y HP Sbjct: 246 HPHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTHVDQTQLREVYLAAHPRA 302 >gi|158425627|ref|YP_001526919.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] gi|158332516|dbj|BAF90001.1| putative site-specific recombinase [Azorhizobium caulinodans ORS 571] Length = 327 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ GG+LR+IQ +LGH+ LSTTQ+YT V++ R+M+ Y HP Sbjct: 269 SATPHALRHSFATHLLARGGELRAIQELLGHASLSTTQVYTAVDATRLMDAYRAAHPRA 327 >gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC 8739] gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739] Length = 298 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|332297603|ref|YP_004439525.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 308 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 44/57 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+FAT +LS+G D+R +Q +LGHS +STTQ YT++ +++++EIY++ HP Sbjct: 244 PVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTHITTEQLIEIYNRAHP 300 >gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct] gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410] gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408] gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6] gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162] gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408] gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6] gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162] Length = 301 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >gi|309811471|ref|ZP_07705253.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp. Ellin185] gi|308434522|gb|EFP58372.1| phage integrase, N-terminal SAM domain protein [Dermacoccus sp. Ellin185] Length = 352 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHS ATHL+ G DLR++Q LGH+ L+TTQIYT+V+++R+ ++Q HP Sbjct: 294 TLSPHALRHSAATHLVEGGADLRTVQEYLGHASLATTQIYTHVSAERLRAGFEQAHPRA 352 >gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] Length = 299 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-93-1035] gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] Length = 305 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] Length = 276 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ L+TTQIYT+++ + + +YD HP + Sbjct: 214 IHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQHLATVYDAAHPRAKR 273 >gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 308 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 308 >gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718] gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718] Length = 298 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] Length = 316 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 257 VHLSPHTLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVARLRLKQLHAQHHPR 315 >gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 299 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CPHL_A] gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A] Length = 311 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 253 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAR 311 >gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia K279a] gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 298 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQIYT+++ + + ++YD HP Sbjct: 229 VHPHMLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDFQHLAKVYDAAHPRAK 287 >gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM 10152] gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 307 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ +R+ +++DQ HP Sbjct: 252 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSIERLKKVHDQAHPRA 307 >gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12] gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12] gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] Length = 301 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223] gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223] Length = 300 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 323 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] Length = 298 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Rv] gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis AF2122/97] gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis F11] gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 02_1987] gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T92] gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis GM 1503] gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T17] gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis K85] gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17] gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85] gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92] gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 210] gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN 4207] gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN R506] gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001] gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003] gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005] gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006] gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008] gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007] gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009] gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010] gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011] gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN V2475] gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv] gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97] gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11] gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85] gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17] gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92] gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011] gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148] gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 311 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 253 VSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALREVWAGAHPRAR 311 >gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7] gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7] Length = 300 Score = 111 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|312112853|ref|YP_004010449.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311217982|gb|ADP69350.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 344 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLLS G DLR IQ +LGH+ LSTTQ YT V+ R+ + Y + HP Sbjct: 286 TATPHALRHSFATHLLSRGADLRVIQELLGHASLSTTQGYTAVDRDRLFQAYSKAHPRA 344 >gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2] gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2] Length = 348 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQIYT ++ + + + Y++ HP + Sbjct: 270 VHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTRLDFQHLAQAYEKAHPRAQR 329 >gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15] gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15] Length = 301 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] Length = 331 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRHS ATH+L G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP Sbjct: 276 PHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHPRA 331 >gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 325 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T+ H LRH+ ATHLL G DLR++Q +LGHS L++TQIYT+V+ +R+ Y Q HP Sbjct: 268 TSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYRQAHPRA 325 >gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] Length = 291 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFA HL+ NG D+R++Q +LGH+ +STTQ Y V + ++ E+Y +THP Sbjct: 233 EITPHVLRHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVKLKEVYQKTHPRA 291 >gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii] gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii] Length = 317 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G DLR+IQ +LGH+ LSTTQ YT++ + +++ +YD+THP Sbjct: 243 AVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLALYDRTHPRA 301 >gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 326 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/67 (43%), Positives = 45/67 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRHSFA+H+L + GDLR++Q +LGHS +++TQIYT ++ + + +YD HP Sbjct: 260 VNVHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYTALDFQHLAAVYDSAHPRA 319 Query: 61 TQKDKKN 67 K N Sbjct: 320 KTKKSGN 326 >gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199] gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199] Length = 314 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL +G DLRS+Q +LGH+ +STTQIYT+V ++R+ + + HP Sbjct: 247 KVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETHHPLAR 306 >gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC BAA-894] gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894] Length = 319 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 261 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 319 >gi|309805934|ref|ZP_07699964.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|309807630|ref|ZP_07701574.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308167673|gb|EFO69822.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 03V1-b] gi|308169127|gb|EFO71201.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 204 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FAT +L+NG DLR++Q +LGH +STTQIYT+V + + +IY + P Sbjct: 139 SVHPHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTHVTKQHLCDIYHKYFPRDN 198 Query: 62 QKDK 65 ++++ Sbjct: 199 KENE 202 >gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980] gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980] Length = 301 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] Length = 306 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 45/62 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LSN GDLR++Q +LGHS LSTTQIYT+++ + +IYDQ HP Sbjct: 243 IDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTHIDFDHLAKIYDQAHPRA 302 Query: 61 TQ 62 + Sbjct: 303 VK 304 >gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica] Length = 303 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 241 IHPHKLRHSFATHILESSGDLRAVQELLGHASLSTTQVYTHLDFQHLTKVYDVAHPRAKR 300 >gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 329 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 267 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 326 Query: 63 KDK 65 +D+ Sbjct: 327 QDE 329 >gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678] Length = 300 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi 35000HP] gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP] Length = 297 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ I+ Q HP Sbjct: 239 KLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKTRLKSIHKQFHPR 296 >gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654] gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654] Length = 315 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRH+FATHLL++G DLR+IQ++LGH+ +STT+IYT+V +R+ E+ HP Sbjct: 251 TVTPHRLRHAFATHLLAHGADLRAIQTLLGHADVSTTEIYTHVLDERLKELVLSHHPLAK 310 Query: 62 Q 62 + Sbjct: 311 K 311 >gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4] gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4] Length = 300 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] Length = 323 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] Length = 312 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++ + +Y + HP + Sbjct: 250 ISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAER 309 Query: 63 KD 64 D Sbjct: 310 SD 311 >gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175] gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175] Length = 300 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 304 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD HP + Sbjct: 242 IHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDVAHPRAKR 301 >gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 247 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 304 >gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis KC583] gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583] Length = 322 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLLS GG+LR IQ +LGH+ LSTTQ+YT ++S R+++IY + HP Sbjct: 264 TATPHALRHSFATHLLSRGGNLRIIQELLGHASLSTTQVYTEIDSDRLLDIYQKAHPRA 322 >gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] Length = 331 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRHS ATH+L G DLR +Q +LGHS L TTQIYT+V++ R+ + Y+Q HP Sbjct: 276 PHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTHVSTTRLKQAYNQAHPRA 331 >gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] Length = 295 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ + HP Sbjct: 237 KVSPHVLRHAFATHLVNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPR 294 >gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] Length = 311 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 249 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLASVYDVAHPRAKR 308 Query: 63 KD 64 + Sbjct: 309 EK 310 >gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] Length = 306 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHS ATHLL G D+R +Q +LGH+ + TTQIYT V++ + E+Y HP Sbjct: 248 EISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYTMVSATTLREVYATAHPRA 306 >gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68] gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68] Length = 301 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10] Length = 321 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 43/66 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+ G DLRS+Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 254 KVSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLAR 313 Query: 62 QKDKKN 67 + D Sbjct: 314 RTDDDQ 319 >gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] Length = 334 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 272 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 331 Query: 63 KDK 65 +D+ Sbjct: 332 QDE 334 >gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica FSC200] gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] Length = 302 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 246 SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302 >gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39] gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|312139234|ref|YP_004006570.1| tyrosine recombinase xerc [Rhodococcus equi 103S] gi|311888573|emb|CBH47885.1| tyrosine recombinase XerC [Rhodococcus equi 103S] Length = 313 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ R+ ++DQ HP Sbjct: 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHPRA 313 >gi|85374026|ref|YP_458088.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] gi|84787109|gb|ABC63291.1| tyrosine recombinase XerC [Erythrobacter litoralis HTCC2594] Length = 264 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ +++ Y + HP Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAATLLDTYRKAHPREK 263 >gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 111 bits (280), Expect = 3e-23, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHLL NG DLR+IQ +LGH ++TT++Y +V+ + ++ + HP Sbjct: 240 KISPHTFRHSFATHLLQNGADLRAIQQMLGHESITTTEVYMHVDRSHLADVLNTFHPR 297 >gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] Length = 302 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302 >gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++++Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHEQHHPRA 298 >gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii] Length = 305 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ ++Q HP Sbjct: 250 PHGLRHAMATHLLEGGADLRTVQEILGHESLATTQIYTHVSTERLRRAFNQAHPRA 305 >gi|119717469|ref|YP_924434.1| phage integrase family protein [Nocardioides sp. JS614] gi|119538130|gb|ABL82747.1| tyrosine recombinase XerC subunit [Nocardioides sp. JS614] Length = 312 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q +LGH+ L+TTQIYT+V+++R+ Y Q HP Sbjct: 257 PHGLRHTAATHLLEGGADLRSVQELLGHASLATTQIYTHVSTERLRRAYQQAHPRA 312 >gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523] Length = 292 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] Length = 306 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLLS GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y++THP Sbjct: 248 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYTAVDTARLMEVYNRTHPKA 306 >gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026] gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412] gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412] gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] Length = 252 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 196 SPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVATERLKQLHQRHHPRA 252 >gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ HP Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPR 306 >gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341] gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341] Length = 302 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++++ HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302 >gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis z3032] gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704] gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704] gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] Length = 304 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 39/58 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 246 PISPHTFRHSFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFVKEVHRTFHPR 303 >gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 301 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHL+ G DLR++Q +LGH ++TT+IYT+++ + ++ HP Sbjct: 243 NISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLRQVLTDFHPR 300 >gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073] gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046] gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227] gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae Sd197] gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536] gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str. 8401] gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A] gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11] gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22] gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4024] gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11] gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6 str. E2348/69] gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1] gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a] gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989] gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14359] gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9] gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B] gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. FRIK966] gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354] gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185] gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088] gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50] gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736] gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W] gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332280422|ref|ZP_08392835.1| tyrosine recombinase xerD [Shigella sp. D9] gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073] gi|147548|gb|AAA62787.1| xprB [Escherichia coli] gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli] gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046] gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227] gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536] gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401] gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A] gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11] gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22] gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli] gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli] gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli] gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli] gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11] gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82] gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli BL21(DE3)] gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1] gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15] gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042] gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088] gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185] gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354] gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W] gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU 83972] gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1 str. NRG 857C] gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1] gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1] gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1] gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3] gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431] gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112] gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905] gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83] gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212] gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327] gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B] gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. G5101] gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. 493-89] gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. H 2687] gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. USDA 5905] gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. LSU-61] gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010] gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G] gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180] gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357] gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1] gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11] gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520] gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482] gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120] gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489] gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863] gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007] gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509] gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2] gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1] gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167] gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227] gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125] gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v] gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86] gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74] gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74] gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9] gi|332344790|gb|AEE58124.1| tyrosine recombinase XerD [Escherichia coli UMNK88] gi|332999673|gb|EGK19258.1| tyrosine recombinase XerD [Shigella flexneri VA-6] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|332283336|ref|YP_004415247.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] Length = 282 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 224 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKTMHAKHHPRA 282 >gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 240 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 298 >gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 301] gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89] gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88] gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89] gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034] gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146] gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3] gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252] gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263] gi|332752931|gb|EGJ83315.1| tyrosine recombinase XerD [Shigella flexneri 4343-70] gi|332753730|gb|EGJ84109.1| tyrosine recombinase XerD [Shigella flexneri K-671] gi|332754528|gb|EGJ84894.1| tyrosine recombinase XerD [Shigella flexneri 2747-71] gi|332765825|gb|EGJ96038.1| tyrosine recombinase XerD [Shigella flexneri 2930-71] gi|333000098|gb|EGK19681.1| tyrosine recombinase XerD [Shigella flexneri K-218] gi|333015114|gb|EGK34457.1| tyrosine recombinase XerD [Shigella flexneri K-304] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] Length = 311 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS+ATHLL G D+R +Q +LGH+ ++TTQIYT V+ +++ E + HP Sbjct: 252 EISPHTLRHSYATHLLEGGADVRVVQELLGHASVTTTQIYTMVSVQQLRETFAAAHPRAR 311 >gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 311 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 42/61 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS ATH++ +G DLRS+Q+ LGH+ ++TTQ+YT+V + E++ HP + Sbjct: 246 ASPHKLRHSCATHMVEHGADLRSVQTFLGHADIATTQVYTHVALGHLKEVHRLHHPRAKR 305 Query: 63 K 63 + Sbjct: 306 R 306 >gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae] Length = 297 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP + Sbjct: 235 IHPHKLRHSFATHILESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDVAHPRAKR 294 Query: 63 KD 64 + Sbjct: 295 EK 296 >gi|158313011|ref|YP_001505519.1| integrase family protein [Frankia sp. EAN1pec] gi|158108416|gb|ABW10613.1| integrase family protein [Frankia sp. EAN1pec] Length = 344 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH ATH++ G DLRS+Q +LGH+ LSTTQIYT+V +R+ +DQ HP Sbjct: 288 TPHGLRHGAATHMVEGGADLRSVQELLGHASLSTTQIYTHVTPERLRAAFDQAHPRA 344 >gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] Length = 313 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ Q HP Sbjct: 257 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQELHAQHHPR 312 >gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri A1501] gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501] gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 44/64 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLRS+Q +LGH+ + TTQIYT+++ + + ++YD HP +K Sbjct: 235 HPHMLRHSFASHLLESSQDLRSVQELLGHADIGTTQIYTHLDFQHLAKVYDHAHPRAKRK 294 Query: 64 DKKN 67 + Sbjct: 295 QDTD 298 >gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum SS9] gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9] Length = 292 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP + Sbjct: 234 TLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 292 >gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia chaffeensis str. Arkansas] gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia chaffeensis str. Arkansas] Length = 311 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RHSFATHL G D+RSIQ +LGH+ LSTTQIYT+++ K +++ Y HP + + Sbjct: 249 ITPHAFRHSFATHLFLGGADIRSIQELLGHANLSTTQIYTHLDHKSVIDHYKNFHPQVIK 308 Query: 63 KD 64 K+ Sbjct: 309 KN 310 >gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733] Length = 301 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 312 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YD HP Sbjct: 244 KIHPHMLRHSFASHMLESSGDLRAVQELLGHANITTTQVYTHLDFQHLAKVYDTAHPRAV 303 Query: 62 QKDKKN 67 +K K Sbjct: 304 RKKPKE 309 >gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893] gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893] Length = 317 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 47/62 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + ++YDQ+HP ++ Sbjct: 249 HPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLAKVYDQSHPRARRR 308 Query: 64 DK 65 Sbjct: 309 RN 310 >gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1] Length = 306 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS+ATHLL G D+R +Q +LGHS ++TTQIYT V + + E+Y +HP Sbjct: 249 SPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYTLVTADHLREVYRSSHPRA 305 >gi|325673461|ref|ZP_08153152.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325555482|gb|EGD25153.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 313 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ R+ ++DQ HP Sbjct: 258 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVSVARLRAVHDQAHPRA 313 >gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98] gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98] gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327] gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327] Length = 336 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATH+L+ G DL+S+ +LGHS L+TT++YT+V R+ EIYD+ HP Sbjct: 281 PHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTHVTFSRLKEIYDKAHPGA 336 >gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 305 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RH ATHLL G DLR +Q +LGHS LSTTQIYT+V++KR+ ++Y Q HP Sbjct: 249 TPHGVRHLAATHLLEGGADLRVVQELLGHSSLSTTQIYTHVSAKRLKQVYSQAHPRA 305 >gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4] gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4] Length = 310 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 250 AVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVTTLREVYATAHPRA 308 >gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] Length = 295 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 237 KVSPHVLRHAFASHLLQNGADLRVVQQLLGHADISTTQIYTHVLEERLQKLVEDHHPLA 295 >gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC BAA-895] gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus] Length = 295 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFATHLL NG DLR++Q +LGHS +STTQ+YT+V+ ++ ++Y HP Sbjct: 237 KLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIKKMYYPFHPK 294 >gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] Length = 332 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 274 PLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPR 331 >gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] Length = 311 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 47/57 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR++Q +LGHS LSTTQIYT+V ++R+ + ++Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRAVQMLLGHSDLSTTQIYTHVANERLRQFHEQHHPRA 311 >gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 332 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFATHLL G D+RS+Q +LGH RL+TTQ YT++ ++++E+YD+ HP Sbjct: 266 AVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYDRAHPGSK 325 >gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144] Length = 296 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH+ LSTT YT+V+++++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHANLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294 Query: 63 KD 64 + Sbjct: 295 GE 296 >gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] Length = 311 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/54 (59%), Positives = 42/54 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 HTLRHSFATHLL+ G DLRS+Q +LGHS +STTQIYT+++ + ++Q HP Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDDPTLRNTHEQFHPR 294 >gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42] gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42] Length = 323 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + +YD HP Sbjct: 261 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLARVYDAAHPRAR 320 Query: 62 QKD 64 +K Sbjct: 321 RKP 323 >gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 329 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328 Query: 63 K 63 K Sbjct: 329 K 329 >gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] Length = 303 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + ++YD+ HP + Sbjct: 238 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKR 297 Query: 63 KDK 65 K + Sbjct: 298 KSE 300 >gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii ATCC 35469] gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1] gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3] gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8] gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96] gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol] gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6] gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG] gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11] gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1] gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3] gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8] gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96] gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol] gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6] gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11] gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76] gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137] gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000] gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017] gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141] gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244] gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012] gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312] gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645] gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342] gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346] gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B] gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A] gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62] gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|333000719|gb|EGK20294.1| tyrosine recombinase XerD [Shigella flexneri K-272] gi|333015225|gb|EGK34567.1| tyrosine recombinase XerD [Shigella flexneri K-227] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 316 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 42/62 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ++LGH + TT+IYT+++ + + + HP Sbjct: 252 TISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTHIDRSMLRQEIIEHHPRNK 311 Query: 62 QK 63 +K Sbjct: 312 KK 313 >gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] Length = 336 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G DLRS+Q +LGH+ +S T++YT+V S+R+++I+ + HP Sbjct: 260 PISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERLLQIHRKYHPRSQ 319 >gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] Length = 317 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 42/66 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT+++ + E HP Sbjct: 245 TISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYTHIDISTLREEILNHHPRNI 304 Query: 62 QKDKKN 67 ++KN Sbjct: 305 MYNEKN 310 >gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens] gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens] gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 Q 62 + Sbjct: 293 R 293 >gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS] gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS] Length = 304 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHLL G DLR +Q +LGHS + TQIYT+++ + E++ HP Sbjct: 246 PISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPR 303 >gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT+++ + + +IYD HP + Sbjct: 238 VHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLAKIYDGAHPRAKK 297 Query: 63 K 63 K Sbjct: 298 K 298 >gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] Length = 297 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQARLQELHQEHHPRA 297 >gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 323 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] Length = 315 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP + Sbjct: 253 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 312 Query: 63 K 63 + Sbjct: 313 R 313 >gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 EDL933] gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. Sakai] gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933] gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai] gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli] gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989911|gb|AEF08894.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|297626642|ref|YP_003688405.1| integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 308 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q +LGH+ LSTTQIYT+V+ +R+ Y+Q P Sbjct: 253 PHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQAFPRA 308 >gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] Length = 313 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 254 AVSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 312 >gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] Length = 324 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 265 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIETYLTAHPRAR 324 >gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] Length = 303 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ +++ HP Sbjct: 235 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIHHPR 292 >gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia J2315] gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315] Length = 316 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHPR 315 >gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 349 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATH+L G D+R++Q +LGHS ++TT +YT V + E+Y +HP Sbjct: 291 ISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYTTSHPRA 348 >gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217] gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217] Length = 303 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLQDLHRQHHPR 302 >gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 296 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 42/60 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT++N + + +YD HP +K Sbjct: 237 PHKLRHSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAAVYDAAHPRAKRKK 296 >gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1] gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1] gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4] gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4] gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1] Length = 321 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RHSFATHLL G DLRS+Q +LGH+ +S T+IYT+V + R+ I++ HP + Sbjct: 258 ISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRR 317 >gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 42/63 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLAAVYDSAHPRAK 292 Query: 62 QKD 64 + Sbjct: 293 RNK 295 >gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 349 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATH+L G D+R++Q +LGHS ++TT +YT V + E+Y +HP Sbjct: 291 ISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYATSHPRA 348 >gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 279 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHAKHHPR 336 >gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302] Length = 299 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|163733501|ref|ZP_02140944.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] gi|161393289|gb|EDQ17615.1| site-specific tyrosine recombinase XerC [Roseobacter litoralis Och 149] Length = 306 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 48/59 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+M++YD+THP Sbjct: 248 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTAVDTVRLMKVYDRTHPKA 306 >gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +++ + ++ +Q HP Sbjct: 240 TISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHLDQTHLRDVVNQFHPR 297 >gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae] Length = 303 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 245 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 302 >gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 292 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 310 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 46/64 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS GDLRS+Q +LGHS LSTTQIYT+V+ ++ ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHPRA 305 Query: 61 TQKD 64 + + Sbjct: 306 QKTN 309 >gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 247 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHPRAKR 306 Query: 63 KD 64 + Sbjct: 307 EK 308 >gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 336 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 279 VSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 335 >gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] Length = 305 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++ Q HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQILLGHADLSTTQIYTHVARARLQQLHQQHHPR 304 >gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] Length = 308 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 Query: 61 TQ 62 T+ Sbjct: 306 TK 307 >gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1] gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1] Length = 298 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +V+ + ++ ++ HP Sbjct: 240 NISPHTFRHSFATHLLENGADLRAIQLMLGHESITTTEIYMHVDRSHLAKVMEKYHPR 297 >gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] Length = 311 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 253 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 310 >gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 300 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RHSFATHLL+ G DLR++Q +LGH L TTQ+YT+V+ +R+ +Y HP Sbjct: 242 KISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >gi|332977413|gb|EGK14190.1| site-specific tyrosine recombinase XerC [Psychrobacter sp. 1501(2011)] Length = 341 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ ++ ++YD+ HP T Sbjct: 281 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDKAHPRATHNK 340 >gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] Length = 318 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 262 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 317 >gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 302 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS ATHLL G DLR IQ +LGHS ++TTQIYT+V + E Y HP Sbjct: 242 NLHPHTLRHSCATHLLEGGADLRIIQDMLGHSDIATTQIYTHVQQTHLQEEYRSAHPRAR 301 Query: 62 Q 62 + Sbjct: 302 R 302 >gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. 8004] gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. B100] gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 323 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + ++ + HP Sbjct: 265 TVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARHHPR 322 >gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|284928595|ref|YP_003422327.1| hypothetical protein Dshi_5002 [Dinoroseobacter shibae DFL 12] gi|251736500|gb|ACT10200.1| hypothtical protein [Dinoroseobacter shibae DFL 12] Length = 308 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R++E+Y+ HP Sbjct: 250 SATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDATRLLEVYNAAHPKA 308 >gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 308 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 Query: 61 TQ 62 T+ Sbjct: 306 TK 307 >gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae B728a] gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 299 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum DJO10A] gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68] gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F] gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp. longum F8] gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp. longum BBMN68] gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 311 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 252 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 311 >gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] Length = 310 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 46/64 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YD+ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPRA 305 Query: 61 TQKD 64 + + Sbjct: 306 QKNE 309 >gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602] gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602] Length = 303 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 241 IHPHKLRHSFATHVLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLATVYDAAHPRAKR 300 >gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As] Length = 340 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD HP + Sbjct: 279 VHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARK 338 Query: 63 KD 64 K Sbjct: 339 KP 340 >gi|257867811|ref|ZP_05647464.1| site-specific recombinase [Enterococcus casseliflavus EC30] gi|257801894|gb|EEV30797.1| site-specific recombinase [Enterococcus casseliflavus EC30] Length = 182 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 124 KIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 182 >gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A] gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A] Length = 308 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 308 >gi|332877022|ref|ZP_08444775.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685130|gb|EGJ57974.1| tyrosine recombinase XerD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 304 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + E+ ++ HP Sbjct: 240 KISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREVLEKFHPRQK 299 >gi|332531493|ref|ZP_08407395.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] Length = 322 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 264 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKTLHAQHHPR 321 >gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae 642] Length = 299 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5] gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1] gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5] gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1] gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027] Length = 299 Score = 111 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] Length = 316 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+ RHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E++ + HP Sbjct: 257 EVSPHSFRHSFATHLLDGGADIRVVQELLGHASVTTTQVYTLVTVDTLREVWAECHPRAR 316 >gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 329 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 269 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 328 Query: 63 K 63 K Sbjct: 329 K 329 >gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 308 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 40/55 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS ATHLL G DLR +Q ILGHS L+TTQIYT+V+ +R+ ++ Q HP Sbjct: 253 PHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIRAVHSQAHPR 307 >gi|315303917|ref|ZP_07874379.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596] gi|313627714|gb|EFR96385.1| tyrosine recombinase XerD [Listeria ivanovii FSL F6-596] Length = 73 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 36/59 (61%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Q HP Sbjct: 15 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 73 >gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|332876021|ref|ZP_08443807.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6014059] gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|332735887|gb|EGJ66928.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6014059] Length = 308 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 Query: 61 TQ 62 T+ Sbjct: 306 TK 307 >gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 323 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL++G DLR++Q +LGHS LSTTQIYT V + + +++ HP Sbjct: 266 VSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQKLHASHHPR 322 >gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467] Length = 298 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 240 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 298 >gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] Length = 306 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 46/66 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RHSFA+HLL + GDLR++Q +LGHS +STTQIYT+++ + + + YD HP Sbjct: 240 VHVHPHMMRHSFASHLLESSGDLRAVQELLGHSNISTTQIYTHLDFQHLAKTYDAAHPRA 299 Query: 61 TQKDKK 66 ++ K Sbjct: 300 KRQKGK 305 >gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 311 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 252 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 311 >gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] Length = 308 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y +HP Sbjct: 249 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPETLIETYLTSHPRAR 308 >gi|254563619|ref|YP_003070714.1| ptyrosine recombinase xerC, integrase/recombinase Ripx [Methylobacterium extorquens DM4] gi|254270897|emb|CAX26902.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens DM4] Length = 365 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325 Query: 62 Q 62 + Sbjct: 326 R 326 >gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 290 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 41/59 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G DLR++Q +LGH+ ++ T+IYT+V + R+ +++ HP Sbjct: 231 ISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRLRQVHRAHHPRSR 289 >gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 294 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RHSFATHLL G DLRS+Q +LGH+ +S T+IYT+V + R+ I++ HP + Sbjct: 231 ISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRR 290 >gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 44/62 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS DLRS+Q +LGHS LSTTQIYT+V+ ++ ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTHVDFDQLAKVYDQAHPRA 305 Query: 61 TQ 62 + Sbjct: 306 QK 307 >gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114] gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114] Length = 298 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP + Sbjct: 237 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 296 Query: 63 KD 64 K Sbjct: 297 KK 298 >gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 308 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 Query: 61 TQ 62 T+ Sbjct: 306 TK 307 >gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|332854278|ref|ZP_08435278.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013150] gi|332865654|ref|ZP_08436480.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013113] gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|332728094|gb|EGJ59483.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013150] gi|332735175|gb|EGJ66255.1| putative tyrosine recombinase XerC [Acinetobacter baumannii 6013113] Length = 308 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 Query: 61 TQ 62 T+ Sbjct: 306 TK 307 >gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] Length = 300 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++Q HP Sbjct: 244 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRVLHEQHHPR 299 >gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] Length = 304 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS AT ++ G DLR +Q +LGHS L+TTQIYT+V++ R+ E++ + HP Sbjct: 247 VSPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] Length = 291 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + + ++YD HP Sbjct: 230 NVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDAAHPRAR 289 Query: 62 QK 63 +K Sbjct: 290 KK 291 >gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFATHLL G +R +Q +LGH+ ++TTQIYT V+ + E++ THP Sbjct: 257 EVSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNTLREVHALTHPRA 315 >gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 309 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RHSFATHLL G DLR++Q +LGH+ ++ T+IYT+V ++R+ I+ Q HP Sbjct: 248 ISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHPRSKI 307 Query: 63 K 63 K Sbjct: 308 K 308 >gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1] gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1] Length = 265 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ ++E Y HP Sbjct: 204 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLETYRGAHPRAK 263 Query: 62 Q 62 + Sbjct: 264 K 264 >gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 251 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPR 308 >gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] Length = 311 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFATHLL+NG ++ IQ +LGH LSTTQ+YT+V S+++ ++ + HP Sbjct: 249 KVSPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQLRDVLSRFHPMSK 308 Query: 62 QKD 64 K+ Sbjct: 309 SKN 311 >gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] Length = 304 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RH+FATHLL G DLR++Q +LGH + TTQIYT+++ + E++ HP Sbjct: 246 NISPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRLFIKEVHKTFHPR 303 >gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V+ R++ + +Q HP Sbjct: 235 KVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDGARLVSLVNQRHP 291 >gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] Length = 302 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHL+ G DLR++Q++LGH+ +STTQ+YT+++ + YD HP Sbjct: 245 ISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302 >gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] Length = 316 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 43/66 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKKN 67 + K++ Sbjct: 308 KYRKEH 313 >gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis C231] gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis 1002] gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis I19] Length = 310 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHS+A+HLL G D+R +Q +LGHS ++TTQIYT++ + + ++ Q+HP Sbjct: 253 ISPHTLRHSYASHLLEGGADVRVVQELLGHSSVTTTQIYTHITADNLRIVWSQSHPRA 310 >gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] Length = 300 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 46/59 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHL+++G DLR +Q++LGH+ ++TTQIYT+V ++R+ ++ D+ HP Sbjct: 241 ISPHDLRHAFATHLVNHGADLRVVQTLLGHADIATTQIYTHVANERLKQVVDKFHPRAK 299 >gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 299 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + + HP Sbjct: 240 NISPHTFRHSFATHLLQNGADLRSIQQMLGHESITTTEIYMHVDRNDLAREMAKFHPRGK 299 >gi|332527817|ref|ZP_08403855.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 43/64 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHS+A+HLL + GDLR++Q +LGH+ +STTQ+YT ++ + + YD HP + Sbjct: 248 VHPHMLRHSYASHLLQSSGDLRAVQELLGHASISTTQVYTQLDFQHLARAYDAAHPRAKR 307 Query: 63 KDKK 66 K + Sbjct: 308 KTPE 311 >gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] Length = 292 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR +Q +LGH+ +STTQIYT+V ++R+ E+ + HP Sbjct: 234 SLSPHGLRHAFATHLVNHGADLRVVQMLLGHADISTTQIYTHVANQRLKELVGKHHPR 291 >gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12] gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12] Length = 336 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS ++TTQ+YT ++ + + ++YD HP + Sbjct: 275 VHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQVYTRLDFQHLAKVYDAAHPRARK 334 Query: 63 KD 64 K Sbjct: 335 KP 336 >gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 41/60 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATHL+ G DLR+IQ +LGH+ LSTTQ YT + R+ E++ + HP + Sbjct: 262 ATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRYTLADEARLTEVWTRAHPRAAR 321 >gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium atrosepticum SCRI1043] gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 299 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 241 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQQHHPRA 299 >gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] Length = 296 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +RM ++ HP Sbjct: 240 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERMKRLHAAHHPR 295 >gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] Length = 318 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQIYT V + E++ HP Sbjct: 259 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYTMVTVHTLREVWAGAHPRAQ 318 >gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] Length = 304 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 246 TISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQIYTHIDRSFLCEVHKSFHPR 303 >gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565] gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565] Length = 303 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+ ++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHPRA 303 >gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] Length = 324 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H+LRH+FATHL+ G DLR++Q +LGH+ +STTQIYT+ + R+ ++Y Q HP Sbjct: 268 TTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVYRQAHPRA 324 >gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 304 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 242 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 301 Query: 61 TQ 62 T+ Sbjct: 302 TK 303 >gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] Length = 292 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RHSFA+HL++NG DL+++Q +LGH+ +STTQIY N R+ E Y + HP Sbjct: 235 ITPHMIRHSFASHLVNNGADLKAVQEMLGHADISTTQIYLNSKQSRLKEEYQKAHPRA 292 >gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] Length = 300 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 242 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKALHAQHHPR 299 >gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDNAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602] gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602] Length = 319 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 263 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 319 >gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 268 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 327 Query: 63 K 63 K Sbjct: 328 K 328 >gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 2250] gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 299 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114] gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] Length = 298 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP Sbjct: 240 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHPR 297 >gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02] gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18] gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140] gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19] gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11] gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18] gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1] gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1] gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332] gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-92-679] gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2] gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae TCDC-NG08107] Length = 305 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica Y11] gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703] Length = 299 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 299 >gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58] gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58] Length = 310 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 47/59 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR++Q++LGH+ + TTQIYT+V+S+R++E+ +Q HP T Sbjct: 235 VSPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRRLVELVNQRHPLAT 293 >gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 310 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 46/64 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YD+ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPRA 305 Query: 61 TQKD 64 + + Sbjct: 306 QKNE 309 >gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] Length = 300 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP Sbjct: 242 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHQEHHPR 299 >gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] Length = 297 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] Length = 315 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+++++ + HP Sbjct: 257 VTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHPRAQ 315 >gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 318 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ + HP Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHPR 317 >gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus faecium DO] Length = 225 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 168 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 225 >gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] Length = 323 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR IQ++LGH+ ++TT+IYT+V R+ + + HP Sbjct: 249 KVTPHTLRHAFATHLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQALVQEHHPLAQ 308 Query: 62 QKDKK 66 +K Sbjct: 309 AARRK 313 >gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 316 Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATH+++ G ++R++Q +LGH+ + TTQIYT+V+ R+ ++ HP Sbjct: 258 EVSPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPR 315 >gi|218532541|ref|YP_002423357.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] gi|218524844|gb|ACK85429.1| tyrosine recombinase XerC [Methylobacterium chloromethanicum CM4] Length = 365 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325 Query: 62 Q 62 + Sbjct: 326 R 326 >gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 7894] gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei BCC215] gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] Length = 333 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332 >gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHPRA 298 >gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2] gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii TCDC-AB0715] Length = 295 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 233 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 292 Query: 61 TQ 62 T+ Sbjct: 293 TK 294 >gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900] Length = 304 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 242 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 301 Query: 61 TQ 62 T+ Sbjct: 302 TK 303 >gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] Length = 294 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT+IYT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEIYTHTTFEELKKVYNQAHPRA 294 >gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567] gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567] Length = 320 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHL+ G D+R +Q +LGH+ ++TTQ+YT V + M+E+Y HP ++ Sbjct: 260 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHPRAHER 319 >gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] Length = 307 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HT RHSFATHLL G DLR++Q +LGHS +S T+IYT++ + R+ I+ Q HP + Sbjct: 247 SISPHTFRHSFATHLLEGGADLRTVQMLLGHSDISATEIYTHIQAGRLRSIHQQYHPRSS 306 >gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. B076] gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] Length = 299 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|332874932|ref|ZP_08442783.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059] gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii TCDC-AB0715] gi|332736875|gb|EGJ67851.1| tyrosine recombinase XerD [Acinetobacter baumannii 6014059] Length = 306 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 325 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 43/64 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q +LGH+ ++TTQIYT+V +RM + HP + Sbjct: 254 ISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKAMVRDLHPLAEE 313 Query: 63 KDKK 66 K + Sbjct: 314 KPDQ 317 >gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 298 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q +LGH+ L TTQIYT+V+ +R+ Y+ HP Sbjct: 243 PHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLQRSYEGAHPRA 298 >gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato Max13] gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato K40] gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|332704140|ref|ZP_08424228.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] gi|332554289|gb|EGJ51333.1| Tyrosine recombinase xerC [Desulfovibrio africanus str. Walvis Bay] Length = 322 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 46/65 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT+RHSFATHLL G DLR++Q +LGH+ +S T+IYT++ + R++ ++ + HP Sbjct: 247 EISPHTMRHSFATHLLEGGADLRTVQILLGHADISATEIYTHLQTSRLLAVHREHHPRSA 306 Query: 62 QKDKK 66 +K + Sbjct: 307 RKSGR 311 >gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 306 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1] gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1] Length = 341 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 285 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPR 340 >gi|84514470|ref|ZP_01001834.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] gi|84511521|gb|EAQ07974.1| tyrosine recombinase [Loktanella vestfoldensis SKA53] Length = 306 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHL++ GGDLR IQ +LGH+ LSTTQ YT V++ ++M +YD+ HP Sbjct: 248 TATPHALRHSFATHLMAAGGDLRCIQELLGHASLSTTQAYTAVDAAQLMAVYDRAHPKA 306 >gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121] Length = 297 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 295 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 36/61 (59%), Positives = 47/61 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 TAH+LRHSFATH+L+NG DLRS+Q +LGH LS TQ+YT+V+ R+ +IY QTHP Sbjct: 235 KVTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRSK 294 Query: 62 Q 62 + Sbjct: 295 E 295 >gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 299 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis G4] gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4] Length = 320 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 319 >gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] Length = 329 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 270 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 328 >gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD HP Sbjct: 233 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 292 Query: 61 TQK 63 +K Sbjct: 293 KKK 295 >gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] Length = 301 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ HP Sbjct: 245 SPHTLRHAFATHLINHGADLRVVQMMLGHSDLSTTQIYTHVAKERLKSLHQAHHPRA 301 >gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 336 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL++G DL S+ +LGHS LSTT+IYT+V +R+ E+Y + HP+ Sbjct: 281 PHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTHVTFERLKEVYRKAHPNA 336 >gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 224 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 283 Query: 62 QK 63 +K Sbjct: 284 RK 285 >gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 321 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 43/65 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+H+L + GDLR +Q +LGH+ ++TTQ+YT ++ + + + YD HP Sbjct: 256 VPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTRLDFQHLAKAYDAAHPRA 315 Query: 61 TQKDK 65 K + Sbjct: 316 KLKRE 320 >gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2] Length = 306 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] Length = 316 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102] gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102] Length = 298 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP + Sbjct: 237 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 296 Query: 63 KD 64 K Sbjct: 297 KK 298 >gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] Length = 297 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAK 293 Query: 62 QKDK 65 ++ K Sbjct: 294 KESK 297 >gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] Length = 298 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+ATHLL GD+R++Q +LGHS LS TQ+YT ++ + +YD+ HP + Sbjct: 237 ISPHMMRHSYATHLLQASGDIRAVQELLGHSNLSATQVYTKLDFDHLARVYDEAHPRAKR 296 Query: 63 KD 64 K Sbjct: 297 KK 298 >gi|304389803|ref|ZP_07371762.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657108|ref|ZP_07909992.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326979|gb|EFL94218.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492211|gb|EFU81818.1| integrase/recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 323 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q ILGH+ L+TTQ YT+++ ++ +Y Q HP Sbjct: 268 PHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHPRA 323 >gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] Length = 297 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 239 TLSPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 309 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 32/62 (51%), Positives = 44/62 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 HTLRHS+ATHLL G DLRS+Q +LGHS + TTQIYT+V++ + E + + HP Q + Sbjct: 245 HTLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTHVDTTDLQEQFRRFHPDAGQSEN 304 Query: 66 KN 67 + Sbjct: 305 EQ 306 >gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 159 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DLRS+Q +LGHS +STTQIY +N+ R+ +IY THP Sbjct: 102 ITPHTLRHSFAAHLLENGADLRSVQEMLGHSDISTTQIYLKMNTGRIRDIYSHTHPRA 159 >gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 43/61 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H+LRH++ATHLL G DLR IQ +LGHS + TT+IYT+V ++++ E Y HP + Sbjct: 237 ITPHSLRHTYATHLLQAGADLRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHPLSKK 296 Query: 63 K 63 K Sbjct: 297 K 297 >gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] Length = 306 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM 20547] Length = 316 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 43/59 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHS+ATHL++ G D+R +Q +LGH+ ++TTQIYT V + E++ ++HP + Sbjct: 252 SPHTLRHSYATHLMAGGADVRVVQELLGHASVTTTQIYTRVTPDHLREVFQESHPRAQE 310 >gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] Length = 314 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ + HP Sbjct: 248 KVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLKSLVMTHHPLAD 307 Query: 62 QKDK 65 D+ Sbjct: 308 AADR 311 >gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 306 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] Length = 298 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT RHSFATHLL NG DLRSIQ +LGH ++TT+IY +V+ + ++ ++ HP Sbjct: 240 KISPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMHVDRAHLTKVMEKHHPRA 298 >gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 307 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++ Y HP Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRAR 294 Query: 62 Q 62 + Sbjct: 295 R 295 >gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 303 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 48/63 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FATHLL G DLR++Q +LGH+ ++TT+IYT+V+S+R++E+ ++ HP Sbjct: 233 AVSPHVLRHAFATHLLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRRHPLAH 292 Query: 62 QKD 64 D Sbjct: 293 MDD 295 >gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] Length = 297 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAK 293 Query: 62 QKDK 65 ++ K Sbjct: 294 KESK 297 >gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 303 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V ++R+ ++ + HP Sbjct: 247 SPHTLRHAFATHLLNHGADLRVVQMLLGHADLSTTQIYTHVANERLKALHGEHHPRA 303 >gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104] gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104] Length = 301 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 246 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301 >gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] Length = 303 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 47/66 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ +++D+ HP Sbjct: 238 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARQRLKQLHDEHHPRS 297 Query: 61 TQKDKK 66 K Sbjct: 298 RAPAGK 303 >gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 301 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 246 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301 >gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str. 'morsitans'] gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 299 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ I+ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKLIHQQHHPRA 299 >gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 305 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 40/63 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++ + HP Sbjct: 242 FKVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEASRLVRAHHPLA 301 Query: 61 TQK 63 +K Sbjct: 302 AKK 304 >gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87] gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87] Length = 299 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL NG DLR+IQ +LGH ++TT+IY +++ + E+ + HP T Sbjct: 240 KISPHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYMHMDRTYLREVLETYHPKKT 299 >gi|298346458|ref|YP_003719145.1| putative integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] gi|298236519|gb|ADI67651.1| possible integrase/recombinase XerD [Mobiluncus curtisii ATCC 43063] Length = 323 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q ILGH+ L+TTQ YT+++ ++ +Y Q HP Sbjct: 268 PHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHPRA 323 >gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655] Length = 298 Score = 110 bits (277), Expect = 5e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H L HSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 237 VHPHKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296 >gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] Length = 326 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/55 (61%), Positives = 39/55 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL NG D+R IQ +LGHS LSTTQIYTNV+ + +YD Sbjct: 270 KVTPHVLRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYTNVDMDTIKSVYDHA 324 >gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188] gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188] gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630] Length = 299 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis] gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 313 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 255 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHPR 312 >gi|319945231|ref|ZP_08019493.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599] gi|319741801|gb|EFV94226.1| tyrosine recombinase XerC [Lautropia mirabilis ATCC 51599] Length = 332 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 42/61 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + + +YD HP + Sbjct: 217 VHPHVLRHSFASHMLQSSGDLRAVQELLGHASIGTTQVYTALDFQHLAAVYDAAHPRARR 276 Query: 63 K 63 + Sbjct: 277 Q 277 >gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus IFO 3283-01] gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01] gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-03] gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-07] gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-22] gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-26] gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-32] gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-12] Length = 315 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+++++ + HP Sbjct: 257 VTPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADEARLLDVWTRAHPRAQ 315 >gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 298 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RHSFATHLL NG +LR IQ +LGH ++TT+IY +++ + + + HP Sbjct: 240 NISPHTFRHSFATHLLENGANLRVIQQMLGHESITTTEIYMHLDKTHLKSVLENYHPRA 298 >gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 300 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL++G D+R IQ +LGH+ L TQ+YT+ + R+ EIY + HP Sbjct: 240 SPHVLRHTFATHLLNSGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHPREK 297 >gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2] gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2] gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] Length = 299 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M H LRHSFA+H+L + GDLR++Q +LGH+ +S TQIYT+++ +R+ ++YD HP Sbjct: 255 MDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAHPRA 314 Query: 61 TQK 63 +K Sbjct: 315 KKK 317 >gi|163853685|ref|YP_001641728.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240141109|ref|YP_002965589.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] gi|163665290|gb|ABY32657.1| tyrosine recombinase XerC [Methylobacterium extorquens PA1] gi|240011086|gb|ACS42312.1| ptyrosine recombinase xerC, integrase/recombinase Ripx (xerC) [Methylobacterium extorquens AM1] Length = 365 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQIYT V++ R+M ++ HP Sbjct: 266 SATPHALRHSFATHLLARRGELRAIQELLGHASLSTTQIYTKVDAARLMSAFEDAHPRAR 325 Query: 62 Q 62 + Sbjct: 326 R 326 >gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] Length = 316 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHPR 315 >gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] Length = 328 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 6/66 (9%) Query: 1 MSTT------AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 MS T H LRH+FATHLL+NG DL+S+ +LGHS L+TT+IYT+V R+ E+Y Sbjct: 263 MSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEVYR 322 Query: 55 QTHPSI 60 + HP Sbjct: 323 KAHPKA 328 >gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] Length = 301 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHL+ G +LR+IQ +LGH ++TT+IYT+++ + + E HP T Sbjct: 240 NISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQRFLREAILSYHPRNT 299 >gi|315655029|ref|ZP_07907933.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490685|gb|EFU80306.1| integrase/recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 323 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q ILGH+ L+TTQ YT+++ ++ +Y Q HP Sbjct: 268 PHGLRHTAATHLLDGGADLRSVQEILGHASLATTQRYTHLSMDKLRAVYLQAHPRA 323 >gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 312 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RHSFATH+LS G DLR +Q +LGH+ LSTTQ+YT+++ + +Y + HP + Sbjct: 250 ISPHVFRHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTHLSLPALKRMYRKAHPHAER 309 Query: 63 KD 64 D Sbjct: 310 SD 311 >gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] Length = 306 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] Length = 308 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 38/57 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT++ R+ + HP Sbjct: 251 ITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHPR 307 >gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries] gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries] Length = 312 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 40/63 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 309 Query: 63 KDK 65 K Sbjct: 310 PPK 312 >gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 298 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHPRA 298 >gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255] gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255] Length = 305 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H++RHSFATHLL GGDLR IQ +LGH+ LS+TQ YT V+ R+M++Y + HP Sbjct: 247 TATPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYTAVDQTRLMDVYKKAHPKA 305 >gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383] gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383] Length = 316 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAQHHPR 315 >gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 297 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT RH+FATHLL++ DLRS+Q +LGHS L+TTQIYT+V + RM EIY + H Sbjct: 241 SPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVATARMHEIYKKAHRRA 297 >gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] Length = 299 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A+HLL + D+R++Q +LGHS LSTTQIYT ++ + ++YD+ HP + Sbjct: 238 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSNLSTTQIYTKLDFDHLAKVYDEGHPRAKR 297 Query: 63 KD 64 K Sbjct: 298 KK 299 >gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] Length = 309 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 247 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHPRAKR 306 Query: 63 KD 64 + Sbjct: 307 EK 308 >gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] Length = 317 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 35/60 (58%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLLS G DLR+IQ +LGH+ +STTQIYT+V S+R++E +D+ HP Sbjct: 254 NVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPRNR 313 >gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14] gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14] Length = 298 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHQTHHPRA 298 >gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] Length = 295 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 238 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQARLTELHREHHPR 295 >gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 331 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V +M Y + P Sbjct: 265 NIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFPRNN 324 Query: 62 Q--KDKK 66 Q K KK Sbjct: 325 QSLKPKK 331 >gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii PYR-1] gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1] Length = 319 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 264 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 319 >gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 40/63 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 309 Query: 63 KDK 65 K Sbjct: 310 PPK 312 >gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 248 SPHVLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKILHAQHHPR 303 >gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|332851492|ref|ZP_08433489.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150] gi|332866808|ref|ZP_08437212.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113] gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|332729945|gb|EGJ61276.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013150] gi|332734416|gb|EGJ65536.1| tyrosine recombinase XerD [Acinetobacter baumannii 6013113] Length = 306 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] Length = 307 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLRS+Q++LGH+ + TT+IYT++ + Y + HP Sbjct: 267 SPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 346 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL +G DLRSIQS+LGH+ LSTTQ YT+++ + +Y++ HP + Sbjct: 257 VGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTHLDMGHLFSLYERAHPRAS 315 >gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] Length = 313 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V +R+ E+ HP Sbjct: 250 KVTPHTLRHAFATHLLAGGADLRSIQTMLGHADVATTEIYTHVLDERLKELVLDHHPLAK 309 >gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] Length = 299 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans CH34] gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 302 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ E++ HP Sbjct: 244 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHLHHHPR 301 >gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205] gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205] Length = 311 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS GDLRS+Q +LGHS LSTTQIYT+V+ ++ +YDQTHP Sbjct: 249 VDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRA 308 Query: 61 TQK 63 + Sbjct: 309 QKD 311 >gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900] Length = 306 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N+N RM ++Y Q HP Sbjct: 237 ITPHTLRHSFAAHMLQNGADIKSLQEMLGHSDISTTQMYLNLNMNRMRDVYMQAHPR 293 >gi|332976670|gb|EGK13510.1| integrase/recombinase XerD [Psychrobacter sp. 1501(2011)] Length = 312 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 46/56 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++ HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPR 311 >gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44] gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44] Length = 318 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ + HP Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHPR 317 >gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 306 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] Length = 297 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] Length = 320 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 319 >gi|294085404|ref|YP_003552164.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664979|gb|ADE40080.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 299 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+FATHLL NGGDLR+IQ +LGH L+TTQ+YT+V+ +++++ +THP Sbjct: 239 VTPHALRHAFATHLLGNGGDLRAIQQLLGHVSLATTQLYTHVDEAHLVKVHQETHPRAKL 298 Query: 63 K 63 + Sbjct: 299 R 299 >gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] Length = 316 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHPR 315 >gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 289 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HT RHSFATHLL NG DLR+IQ ++GH ++TT+IYT+++++ + + ++ HP Sbjct: 230 VGPHTFRHSFATHLLENGADLRTIQILMGHESITTTEIYTHLDTQHLRSVIERFHPRTK 288 >gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4] gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4] Length = 283 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATH+L G D+R+IQ +LGHS LSTTQIYT V + + + ++ Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKA 274 >gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 292 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 45/57 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ EIY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPR 291 >gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 292 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFAT LL G DLR++Q +LGH+ LSTT YT+V ++R+ +Y Q HP Sbjct: 235 VTPHALRHSFATDLLERGADLRAVQELLGHASLSTTGQYTHVTTERLRHVYQQAHPRA 292 >gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] Length = 312 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 46/56 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++++ HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPR 311 >gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 298 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H +RH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ HP + Sbjct: 240 TLSPHVMRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHATHHPRV 298 >gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264] Length = 333 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHPR 332 >gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] Length = 315 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLR+IQ++LGH+ L+TT+IYT+V R+ E+ + HP Sbjct: 250 KVTPHTLRHAFATHLLENGADLRAIQTLLGHADLATTEIYTHVLEHRLRELVETHHPLNR 309 >gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] Length = 328 Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R++ + HP + Sbjct: 266 ISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTHVLEERLIRLVTDHHPLSDE 325 >gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] Length = 317 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 297 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] Length = 297 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013] Length = 305 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J] gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J] Length = 328 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 268 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 327 Query: 63 K 63 K Sbjct: 328 K 328 >gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385] gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 301 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 239 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 298 Query: 63 KDK 65 +D+ Sbjct: 299 QDE 301 >gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] Length = 299 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 Q 62 + Sbjct: 293 R 293 >gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017] Length = 273 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 215 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 273 >gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd KW20] gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20] gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] Length = 297 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2] Length = 317 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+ ATH+L + GDLR++Q +LGH+ LSTTQIYT ++ + + +YD+ HP Sbjct: 255 KMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQHLATVYDKAHPRAK 314 Query: 62 QKD 64 +K Sbjct: 315 KKP 317 >gi|194333360|ref|YP_002015220.1| integrase family protein [Prosthecochloris aestuarii DSM 271] gi|194311178|gb|ACF45573.1| integrase family protein [Prosthecochloris aestuarii DSM 271] Length = 335 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATH+L++G DL+S+ +LGH+ L+TT+IYT+V R+ E+Y + HP Sbjct: 280 PHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTHVTFGRIKEVYLKAHPKA 335 >gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae FF5] gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. pisi str. 1704B] gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 299 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] Length = 309 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + G+LR +Q +LGH+ LSTTQIYT+++ + + +YD HP + Sbjct: 247 INPHKLRHSFATHILESSGNLRGVQELLGHANLSTTQIYTHLDFQHLANVYDVAHPRAKR 306 Query: 63 KD 64 + Sbjct: 307 EK 308 >gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] Length = 311 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 44/63 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH+ RHSFA+HLL G DLR +Q +LGHS +STTQIYT+V +KR+ +Y HP + Sbjct: 249 SAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHPRAKKH 308 Query: 64 DKK 66 + Sbjct: 309 KED 311 >gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS] gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS] Length = 298 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 >gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] Length = 320 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLL+ GGDLR+IQ ++GH+ LS+TQIYT ++S ++ YD++HP Sbjct: 260 SATPHALRHSFATHLLAGGGDLRTIQELMGHASLSSTQIYTQIDSASLLAAYDRSHPR 317 >gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] Length = 302 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +I+ + HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSEHHPRA 302 >gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 86-028NP] gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP] Length = 297 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 299 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V + + + Y HP Sbjct: 241 KIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHPRA 299 >gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] Length = 319 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/65 (50%), Positives = 46/65 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T HTLRH+FATHLL+NG DLR+IQ++LGH+ +STT+IYT+V R+ E+ HP Sbjct: 253 TVTPHTLRHAFATHLLANGADLRTIQTLLGHADVSTTEIYTHVLDARLTELVLDHHPLAR 312 Query: 62 QKDKK 66 + Sbjct: 313 GDKPE 317 >gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031] gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031] Length = 297 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4] gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4] Length = 312 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 46/56 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVATARLQKLHAEHHPR 311 >gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] Length = 316 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 258 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 315 >gi|333029648|ref|ZP_08457709.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] gi|332740245|gb|EGJ70727.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] Length = 309 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFAT++L+NG DL+ I+ ILGH+ LS T++YT+ K + ++Y+Q HP Sbjct: 250 VKCSPHVLRHSFATNMLNNGADLQVIKEILGHTSLSATEVYTHTTFKELKKVYNQAHPRA 309 >gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3] Length = 298 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 240 KLSPHVLRHAFATHLLNHGADLRVVQILLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 >gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium adolescentis ATCC 15703] gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 272 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 329 >gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit 7] Length = 299 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL + DLR++Q +LGH+ + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHADIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 QK 63 +K Sbjct: 293 RK 294 >gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] Length = 305 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHATHHPRA 305 >gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 42/63 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G DLR++Q +LGHS ++ T+IYT+V S R+ +D HP Sbjct: 241 VSPHTLRHSFATHLLEGGADLRTVQVLLGHSDITATEIYTHVQSDRLKSAHDFFHPRSKN 300 Query: 63 KDK 65 K Sbjct: 301 TGK 303 >gi|21674453|ref|NP_662518.1| phage/XerD family site-specific recombinase [Chlorobium tepidum TLS] gi|34222894|sp|Q8KBZ5|XERC_CHLTE RecName: Full=Tyrosine recombinase xerC gi|21647640|gb|AAM72860.1| site-specific recombinase, phage/XerD family [Chlorobium tepidum TLS] Length = 336 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 27/56 (48%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATH+L+ G DL+S+ +LGHS L+TT++YT+V R+ + Y + HP Sbjct: 281 PHMLRHTFATHMLNGGADLKSVSEMLGHSNLTTTELYTHVTFNRLRDAYTKAHPRA 336 >gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640] gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 302 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 240 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 299 Query: 63 KDK 65 ++K Sbjct: 300 QEK 302 >gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D] gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D] Length = 328 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYDQ HP + Sbjct: 268 VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKK 327 Query: 63 K 63 K Sbjct: 328 K 328 >gi|300783889|ref|YP_003764180.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] gi|299793403|gb|ADJ43778.1| integrase/recombinase XerC [Amycolatopsis mediterranei U32] Length = 326 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V R+ I+D+ HP Sbjct: 271 PHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHPRA 326 >gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] Length = 297 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] Length = 312 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 254 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHPR 311 >gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + + +YD+ Sbjct: 254 KVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308 >gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 331 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 2/67 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V +M Y + P Sbjct: 265 NIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYQKYFPRNN 324 Query: 62 Q--KDKK 66 Q K KK Sbjct: 325 QSLKPKK 331 >gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis Bt4] Length = 312 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHPR 311 >gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] Length = 286 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATH+L G D+R IQ +LGH+ LSTTQIYT V +K + E ++ Sbjct: 221 IKVTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTRVTAKHLKEAVERA 276 >gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217] gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217] Length = 306 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 47/58 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ R+ME+Y +THP Sbjct: 246 TATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYTGVDTARLMEVYARTHPQ 303 >gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 91] gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei B7210] gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei NCTC 13177] gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243] gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] Length = 333 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332 >gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 331 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRHSFATHLL G D+R +Q +LGH+ +STTQIYT V ++++ E+Y + P Sbjct: 274 PHSLRHSFATHLLDGGADIRVVQELLGHASVSTTQIYTEVTAQQLREVYSSSFPRA 329 >gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2846] Length = 297 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 294 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 HTLRHSFA H+L NG D+RS+Q +LGHS +STTQ+Y +N +M ++Y +THP Sbjct: 237 IAPHTLRHSFAVHMLQNGADIRSVQEMLGHSDISTTQVYLGMNMNKMRDVYMKTHPR 293 >gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 297 Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 38/57 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATH L G DLR +Q +LGH+ +STTQIYT+V+ + + + HP Sbjct: 236 VSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPR 292 >gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens SBW25] gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 292 Query: 62 Q 62 + Sbjct: 293 R 293 >gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] Length = 318 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ + HP Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHAEHHPR 317 >gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21] Length = 297 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 316 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 35/56 (62%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++ Y+Q HP Sbjct: 261 PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 316 >gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] Length = 303 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H +RH+FATHLL +G DLR++Q +LGHS LSTTQIYT+V + + + Y Q P Sbjct: 244 IHPHMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTHVTTAHLQKDYRQFFPRAK 302 >gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 42/55 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + + +YD+ Sbjct: 254 KVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308 >gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45] gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45] Length = 308 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V +R+ E+ HP Sbjct: 248 KVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLKELVLDHHPLAR 307 >gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] Length = 308 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGH+ L+TTQ+YT+V+ +R+ ++DQ HP Sbjct: 253 PHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHPRA 308 >gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 267 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 209 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 267 >gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] Length = 308 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLKELHGKHHPR 307 >gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] Length = 264 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 206 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 264 >gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ LS+TQIYT ++ + + ++YD HP + Sbjct: 230 VHPHMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARK 289 Query: 63 KDK 65 + K Sbjct: 290 RGK 292 >gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013] Length = 305 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 299 >gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] Length = 310 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V + E+Y HP Sbjct: 251 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTVNTLREVYATAHPRA 308 >gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] Length = 283 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATH+L G D+R+IQ +LGHS LSTTQIYT V + + + ++ Sbjct: 219 VKVTPHMLRHSFATHMLERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKA 274 >gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 243 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPRA 299 >gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7] gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7] Length = 314 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP + Sbjct: 252 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 311 Query: 63 K 63 + Sbjct: 312 Q 312 >gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ] gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 44/63 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ ++TTQIYT+++ + + +YDQ HP ++ Sbjct: 235 HPHMLRHSFASHLLESSQDLRAVQELLGHADIATTQIYTHLDFQHLAAVYDQAHPRARRR 294 Query: 64 DKK 66 Sbjct: 295 KDD 297 >gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] Length = 316 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + K+ Sbjct: 308 KYRKE 312 >gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] Length = 322 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 264 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAVHHPR 321 >gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] Length = 294 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLSSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] Length = 310 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGH+ L+TTQ+YT+V+ +R+ ++DQ HP Sbjct: 255 PHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLRSVHDQAHPRA 310 >gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila L48] gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHLLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] Length = 299 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V + + + Y HP Sbjct: 241 KIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHPRA 299 >gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis TXDOH] Length = 323 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 267 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKALHATHHPR 322 >gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] Length = 329 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 270 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 328 >gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] Length = 305 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHASHHPRA 305 >gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] Length = 333 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332 >gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes WB4] gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes WB4] Length = 302 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 43/64 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+++ + + + HP Sbjct: 236 NVSPHTFRHSFATHLLENGANLRAIQQLLGHESITTTEIYTHIDVHFLRQTVLECHPFYR 295 Query: 62 QKDK 65 +K Sbjct: 296 DSNK 299 >gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 305 Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 109 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATH+L G D+R++Q +LGH+ + TTQ+YT+V+ ++E Y +HP Sbjct: 250 PLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHPRAK 309 >gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH] gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH] Length = 333 Score = 109 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332 >gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 301 Score = 109 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 41/61 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL+ G D+R +Q +LGHS ++TTQ+YT V + + ++Y HP Sbjct: 241 VEVSPHILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYTLVTADTLRDVYVSAHPRA 300 Query: 61 T 61 Sbjct: 301 R 301 >gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7] Length = 307 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHPR 306 >gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1] Length = 307 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHPR 306 >gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu] Length = 315 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 259 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAQHHPR 314 >gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 14] gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 9] gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 112] gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] Length = 333 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 274 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 332 >gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] Length = 294 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHATFEELKKVYNQAHPRA 294 >gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9] Length = 307 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATH+L G D+R++Q +LGH+ + TTQ+YT+V+ ++E Y +HP Sbjct: 248 PLHPHTLRHSFATHMLQGGADVRTVQELLGHASVKTTQMYTHVSQDTLIETYITSHPRAK 307 >gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] Length = 301 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 46/64 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGH+ + TTQ+YT+++ + + ++YD HP + Sbjct: 236 VHPHMLRHSFASHLLESSGDLRAVQELLGHAHIGTTQVYTHLDFQHLTKVYDAAHPRARR 295 Query: 63 KDKK 66 K ++ Sbjct: 296 KPRE 299 >gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 294 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL NG DLR+IQ +LGH + TT++YT+++ + + E HP Sbjct: 235 NISPHTFRHSFATHLLKNGADLRAIQQMLGHENIVTTEVYTHIDQEHLREAILNHHPRNK 294 >gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] Length = 301 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 243 SLSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHPR 300 >gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC 11218] Length = 302 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ + HP Sbjct: 244 KLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHSEHHPRA 302 >gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] Length = 315 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q +LGH+ L TTQIYT+V+ +R+ Y+ HP Sbjct: 260 PHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSIERLRRSYEGAHPRA 315 >gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] Length = 306 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 248 TLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQRLQSLHQEHHPR 305 >gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 290 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+++G DLR +QS+LGH+ +STTQIYT+V ++R+ I + HP Sbjct: 234 SPHSLRHAFATHLVNHGADLRVVQSLLGHADISTTQIYTHVANERLKNIVSEHHPR 289 >gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594] gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594] Length = 306 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 46/65 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V++ R++ + ++ HP Sbjct: 231 KVSPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAARLVALVNERHPLSA 290 Query: 62 QKDKK 66 + K Sbjct: 291 RAAGK 295 >gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] Length = 312 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 46/56 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS LSTTQIYT+V + R+ +++ + HP Sbjct: 256 SPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQKLHAEHHPR 311 >gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC 11170] gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC 11170] Length = 330 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V++ ++ ++ THP Sbjct: 271 TATPHALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHPRAR 330 >gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354] Length = 304 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR++Q++LGH+ ++TTQIYT+V S R++ + ++ HP Sbjct: 229 KISPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVESARLVALVNERHPLAD 288 Query: 62 Q 62 Q Sbjct: 289 Q 289 >gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] Length = 329 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 270 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 328 >gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT] gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336] gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT] gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336] Length = 297 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKILHERFHPR 296 >gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 307 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 44/61 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HTLRH+FATHLL+N ++R +Q +LGH +STTQ YT+V + R+ E+Y++ HP Sbjct: 247 VDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTNDRLFEVYNRAHPHS 306 Query: 61 T 61 Sbjct: 307 K 307 >gi|189346148|ref|YP_001942677.1| integrase family protein [Chlorobium limicola DSM 245] gi|189340295|gb|ACD89698.1| integrase family protein [Chlorobium limicola DSM 245] Length = 337 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL++G DL+S+ +LGHS L+TT+IYT+V R+ E+Y + HP Sbjct: 282 PHILRHSFATHLLNSGADLKSVSEMLGHSSLTTTEIYTHVTFSRLSEVYRKAHPKA 337 >gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] Length = 294 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium] Length = 308 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHS+ATHLL+ G D+R +Q +LGH+ ++TTQIYT + ++ E Y THP T Sbjct: 250 VSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRAT 308 >gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] Length = 300 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL++G DLR++Q +LGH LS+TQ+YT+V + + + Y HP Sbjct: 242 KIHPHMLRHTFATHLLNHGADLRTVQDLLGHESLSSTQVYTHVTKEHLRQTYMAYHPRA 300 >gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] Length = 316 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + K+ Sbjct: 308 KYRKE 312 >gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435] gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435] Length = 297 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++ K Sbjct: 294 KESK 297 >gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 306 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 35/56 (62%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L NG DLRS+Q ILGHS LSTTQIYT+V+ +R++ Y+Q HP Sbjct: 251 PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 306 >gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] Length = 294 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL G DLR++Q +LGH+ ++TTQIYT V +R+ +I + HP Sbjct: 232 KLSPHVLRHSFATHLLEGGADLRALQMLLGHADIATTQIYTRVLEERLRQIVETHHPLA 290 >gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] Length = 314 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHPR 313 >gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium] Length = 311 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L +G DLR +Q +LGH+ +STTQ+YT V+++ + ++Y ++HP Sbjct: 244 EVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302 >gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] Length = 308 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 246 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 Query: 61 TQ 62 T+ Sbjct: 306 TK 307 >gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] Length = 316 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHPR 315 >gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] Length = 316 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQ+YT+++ ++E Y HP Sbjct: 251 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 310 Query: 62 QKD 64 +K+ Sbjct: 311 KKN 313 >gi|332534422|ref|ZP_08410262.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] Length = 314 Score = 109 bits (275), Expect = 9e-23, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP + Sbjct: 252 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 311 Query: 63 K 63 + Sbjct: 312 R 312 >gi|332686606|ref|YP_004456380.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC 35311] gi|332370615|dbj|BAK21571.1| site-specific tyrosine recombinase [Melissococcus plutonius ATCC 35311] Length = 299 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH LSTTQIY +V + + + Y HP Sbjct: 241 EIHPHMLRHTFATHLLNNGADMRTVQELLGHENLSTTQIYAHVTKESLQKNYRTFHPRA 299 >gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] Length = 314 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGHS LS TQ+YT+++ + + ++YD THP + Sbjct: 252 VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKK 311 Query: 63 K 63 + Sbjct: 312 R 312 >gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB] gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB] Length = 297 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] Length = 312 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 42/67 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+NG D+RS+Q +LGHS LSTTQIYT+V + + + Y + P Sbjct: 245 IHIHPHMLRHSFATAMLNNGADIRSVQELLGHSSLSTTQIYTHVTRENLQKTYMKLFPRA 304 Query: 61 TQKDKKN 67 + Sbjct: 305 KMTKEDQ 311 >gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] Length = 294 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 306 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20] gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20] Length = 317 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ R+ + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|241762668|ref|ZP_04760738.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241372739|gb|EER62461.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFA+HLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 247 KATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHPRAD 306 Query: 62 Q 62 + Sbjct: 307 K 307 >gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi] Length = 267 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 40/63 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 205 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 264 Query: 63 KDK 65 K Sbjct: 265 PPK 267 >gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1] gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1] Length = 306 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 307 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRHSFATH+L+ G DLRS+Q +LGH+ LS+TQIYT+ + +++ Y HP Sbjct: 235 SIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRAR 294 Query: 62 Q 62 + Sbjct: 295 R 295 >gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M + H+ RHS+ATHLL G DLR+IQS+LGH L+TTQ YT++N ++ +YD THP Sbjct: 248 MDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307 Query: 61 TQK 63 + K Sbjct: 308 SGK 310 >gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] Length = 320 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 264 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHPR 319 >gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1] gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1] Length = 295 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 45/64 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V++ R++E+ + HP Sbjct: 232 ISPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVELVNSRHPLARP 291 Query: 63 KDKK 66 + Sbjct: 292 TTRD 295 >gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] Length = 333 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM ++ Q HP Sbjct: 277 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPR 332 >gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 39/55 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+ +YD H Sbjct: 253 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307 >gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38] gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38] Length = 295 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL+NG DL S++ +LGH+ LS+TQIYT+ + + ++Y + HP Sbjct: 238 SPHVLRHSFATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHPRNK 295 >gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 355 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP Sbjct: 293 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 352 Query: 62 QKD 64 ++D Sbjct: 353 KRD 355 >gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] Length = 322 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHPR 321 >gi|103485754|ref|YP_615315.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975831|gb|ABF51982.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 297 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 44/58 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHSFATHLL+ G DLRS+Q +LGH+ L++TQIYT V++ +++IY HP Sbjct: 239 TTPHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRA 296 >gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 246 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHPR 303 >gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 316 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 41/63 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +RM + HP Sbjct: 253 VHPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMRAMVRDLHPLSDS 312 Query: 63 KDK 65 D+ Sbjct: 313 GDE 315 >gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169] gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1] gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1] gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1] gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8] gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72] gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E] gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1] Length = 307 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHL+++G DLRS+Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 249 AISPHTLRHAFATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVATTRLQNLHAKHHPR 306 >gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] Length = 305 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT++ R+ Q HP Sbjct: 248 ITPHAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVHQAHPRA 305 >gi|170741374|ref|YP_001770029.1| integrase family protein [Methylobacterium sp. 4-46] gi|259710434|sp|B0UNY7|XERC_METS4 RecName: Full=Tyrosine recombinase xerC gi|168195648|gb|ACA17595.1| integrase family protein [Methylobacterium sp. 4-46] Length = 320 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ GDLR+IQ +LGH+ L+TTQIYT V+S R+M ++ HP Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQIYTKVDSARLMSAFEAAHPRAG 318 Query: 62 Q 62 + Sbjct: 319 R 319 >gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18] Length = 305 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 RDE 305 >gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] Length = 325 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 268 ISPHALRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 324 >gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto Rico] Length = 312 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQ+YT+++ ++E Y HP Sbjct: 247 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 306 Query: 62 QKD 64 +K+ Sbjct: 307 KKN 309 >gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 233 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 46/62 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 171 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 230 Query: 61 TQ 62 T+ Sbjct: 231 TK 232 >gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 297 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+NG DL S++ +LGHS L++TQ+YT+ + + ++Y + HP Sbjct: 240 SPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPRNK 297 >gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] Length = 304 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHL+ G DLR++Q +LGHS + TTQIYT+++ + E++ HP Sbjct: 246 SISPHTLRHTFATHLIEGGADLRAVQEMLGHSSIVTTQIYTHLDRSFIKEVHKTFHPR 303 >gi|260753463|ref|YP_003226356.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552826|gb|ACV75772.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFA+HLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 247 KATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHPRAD 306 Query: 62 Q 62 + Sbjct: 307 K 307 >gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] Length = 286 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 225 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 284 Query: 63 KD 64 + Sbjct: 285 GE 286 >gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +L +IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298 Query: 62 QKD 64 +D Sbjct: 299 PRD 301 >gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118] gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118] Length = 337 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + DLR++Q +LGH+ ++TTQ YT ++ + + + YD HP Sbjct: 271 PVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTRLDFQHLAKAYDAAHPRAK 330 Query: 62 QK 63 K Sbjct: 331 IK 332 >gi|332289739|ref|YP_004420591.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] Length = 297 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ +++ + HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKQLHSKYHPR 296 >gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] Length = 304 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 303 >gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 316 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRTLHAQHHPR 315 >gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 296 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 43/62 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T+ H LRHSFATHLL+ G DL ++ +LGH+ L++TQ+YT+ + K + ++Y + HP Sbjct: 235 FKTSPHILRHSFATHLLNQGADLNVVKELLGHASLASTQVYTHNSIKALKDVYSKAHPRT 294 Query: 61 TQ 62 + Sbjct: 295 KK 296 >gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] Length = 316 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + K+ Sbjct: 308 KYRKE 312 >gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] Length = 299 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHL+++G DLR +Q +LGHS L+TTQIYT+V RM +++ Q HP Sbjct: 243 SPHTLRHAFATHLINHGADLRVVQMLLGHSDLTTTQIYTHVARHRMQQLHAQHHPR 298 >gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] Length = 311 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL G DLRS+Q +LGH+ + TTQIYT++ KR+++++ Q HP Sbjct: 254 VSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTHLGMKRLVDVHRQCHPR 310 >gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] Length = 303 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 241 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRENLQKNYQNFFPRAK 300 Query: 62 QK 63 +K Sbjct: 301 KK 302 >gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2] gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2] Length = 299 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL++G D+R++Q +LGH+ LSTTQIY +V + + Y Q HP Sbjct: 241 KIHPHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAHVTKDSLQKNYRQFHPRA 299 >gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M] gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M] Length = 302 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 302 >gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] Length = 261 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT+++ + + IYD HP + Sbjct: 200 HPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHPRAKRN 259 Query: 64 D 64 Sbjct: 260 K 260 >gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 299 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGHS LS+TQ+YT+V + + + Y HP Sbjct: 241 KIYPHMLRHTFATHLLNNGADLRTVQELLGHSHLSSTQVYTHVTKEHLRQTYMNAHPRA 299 >gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel] gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel] Length = 318 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TTAHT RHSFATHL G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y HP I + Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313 Query: 63 KD 64 K+ Sbjct: 314 KN 315 >gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 260 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLLSNG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y THP Sbjct: 202 TIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTNEYLRKTYLNTHPRA 260 >gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia] gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] Length = 312 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 40/63 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT V + R+ E HP Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPFAKS 309 Query: 63 KDK 65 K Sbjct: 310 PPK 312 >gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] Length = 317 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L G DLRS+Q +LGH+ LSTTQ+Y + M E+Y++ HP Sbjct: 248 ITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARRNMKEVYEKHHP 303 >gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 304 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 242 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 301 Query: 61 TQK 63 + Sbjct: 302 HKN 304 >gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 250 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 194 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 249 >gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 306 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] Length = 317 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ R+ + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTHIDRHRLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] Length = 391 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H++RHSFATHL+ G D+R +Q +LGH+ ++TTQ+YT V + M+E+Y HP ++ Sbjct: 331 SPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTKVTPEGMLEVYRMAHPRAHER 390 >gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028] gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045] Length = 296 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294 Query: 63 KD 64 + Sbjct: 295 GE 296 >gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] Length = 357 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/63 (52%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFA HLL DLR++Q +LGHS LS+TQIYT +++ + ++YDQTHP Sbjct: 288 TITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTKLDADHLAQVYDQTHPRAR 347 Query: 62 QKD 64 +K Sbjct: 348 RKP 350 >gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] Length = 312 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL G DLR+IQ +LGH+ +STTQIYT V + R+ + + HP Sbjct: 248 PIKPHLLRHSFATHLLEGGADLRAIQEMLGHADISTTQIYTAVQANRLADEHALHHPRSK 307 Query: 62 Q 62 Q Sbjct: 308 Q 308 >gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202] gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202] Length = 301 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++++ HP Sbjct: 243 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHPR 300 >gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +L +IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 NVSPHTFRHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFLRKEILEHHPRSK 298 Query: 62 QKD 64 +D Sbjct: 299 PRD 301 >gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] Length = 301 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVAAHHPR 300 >gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] Length = 302 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 244 PISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHPR 301 >gi|162456070|ref|YP_001618437.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] gi|161166652|emb|CAN97957.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] Length = 358 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+ ATHLL G DLR+IQ +LGH+ L+TTQ YT+V+ ++++YD HP ++ Sbjct: 296 HPHALRHTCATHLLDGGADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMARKR 355 >gi|56552810|ref|YP_163649.1| site-specific tyrosine recombinase XerC [Zymomonas mobilis subsp. mobilis ZM4] gi|56544384|gb|AAV90538.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 109 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFA+HLL G DLRS+Q +LGH+ LS+TQIYT V++ R++++Y HP Sbjct: 247 KATPHALRHSFASHLLGRGADLRSLQELLGHASLSSTQIYTAVDAARLLDVYRAAHPRAD 306 Query: 62 Q 62 + Sbjct: 307 K 307 >gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909] Length = 296 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294 Query: 63 KD 64 + Sbjct: 295 GE 296 >gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] Length = 318 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TTAHT RHSFATHL G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y HP I + Sbjct: 254 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 313 Query: 63 KD 64 K+ Sbjct: 314 KN 315 >gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152] Length = 298 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL NG DLR+IQ +LGH ++TT++Y ++++ + EI + HP Sbjct: 240 KISPHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVHLDNSYLKEIVETYHPR 297 >gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] Length = 356 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 AH LRHS ATHL+ G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP Sbjct: 301 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYIRAHPRA 356 >gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] Length = 308 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL G D+R +Q +LGH+ ++TTQ+YT V ++ E Y HP Sbjct: 249 ISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAAHPRAR 307 >gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 291 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S H RH+FATHLL G DLRS+Q +LGH+ L TTQIYT+++ + + E + + HP Sbjct: 233 SLHPHLFRHTFATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPR 290 >gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70] gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70] Length = 283 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 225 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 282 >gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Virginia] Length = 311 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +TT HTLRHSFATHL G D+R +Q +LGH+ L+TTQ+YT+++ ++E Y HP Sbjct: 246 TTTPHTLRHSFATHLFLEGADIRVVQELLGHASLATTQVYTHLDYNSVIENYRGFHPQTI 305 Query: 62 QKD 64 +K+ Sbjct: 306 KKN 308 >gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] Length = 318 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 41/66 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+NG D+R++Q +LGH LS+TQIYT+V + + + Y P Sbjct: 239 LKIHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRS 298 Query: 61 TQKDKK 66 + Sbjct: 299 KAGKNE 304 >gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] Length = 378 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ +++TQ+YT ++ + + +YD THP Sbjct: 275 PVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTRLDFQHLARVYDATHPRAH 334 Query: 62 Q 62 + Sbjct: 335 K 335 >gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I] gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I] Length = 278 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/60 (55%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATH+L NGG++ +IQ +LGHS L+TTQIYT+ N + E+Y +THP Sbjct: 219 NVTPHKLRHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYNVDELKEMYGRTHPLGK 278 >gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] Length = 323 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V R+ E+ HP Sbjct: 249 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHPLAQ 308 Query: 62 QKDK 65 + + Sbjct: 309 EDPR 312 >gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816] gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220] gi|332311722|gb|EGJ24817.1| Tyrosine recombinase xerC [Listeria monocytogenes str. Scott A] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 302 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H+LRH+FATHLL++G DLRS+Q +LGH+ LSTT+IYT+V R+ ++ + HP Sbjct: 244 TVSPHSLRHAFATHLLNHGADLRSVQLMLGHAALSTTEIYTHVAQARLKALHAKHHPR 301 >gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] Length = 306 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 323 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 267 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKVLHQQHHPR 322 >gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++++ HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQIRMQQLHEKYHPR 304 >gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 45/66 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKKN 67 Q +++ Sbjct: 302 QYNERQ 307 >gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6] gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6] gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] Length = 319 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + ++ Sbjct: 309 KYRRE 313 >gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] Length = 286 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 225 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 284 Query: 63 KD 64 + Sbjct: 285 GE 286 >gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] Length = 286 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 225 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 284 Query: 63 KD 64 + Sbjct: 285 GE 286 >gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] Length = 261 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 41/61 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATH+L DLR++Q +LGHS LSTTQIYT+++ + + IYD HP + Sbjct: 200 HPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTHLDFQYLARIYDLAHPRAKRN 259 Query: 64 D 64 Sbjct: 260 K 260 >gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] Length = 309 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL+ G DLR IQ +LGH+ ++TTQIYT+V + R +D+ HP Sbjct: 242 PVKPHMLRHSFATHLLTGGADLRIIQELLGHADIATTQIYTSVEADRTRSAHDEFHPRSR 301 >gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont] Length = 297 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87] gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87] Length = 296 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294 Query: 63 KD 64 + Sbjct: 295 GE 296 >gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] Length = 305 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 297 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHPR 296 >gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] Length = 290 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 46/59 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S + H+LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V ++R+ I Q HP Sbjct: 232 SLSPHSLRHAFATHLVNHGADLRTVQMLLGHADIATTQIYTHVANERLKSIVQQHHPRA 290 >gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] Length = 297 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++++ HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHEKYHPR 296 >gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] Length = 301 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLRS+Q +LGH+ L+TTQIYT+V ++R+ ++ Q HP Sbjct: 245 SPHGLRHAFATHLVNHGADLRSVQMMLGHASLNTTQIYTHVANERLKQLVAQHHPR 300 >gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161] gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818] gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] Length = 297 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERFHPR 296 >gi|284992378|ref|YP_003410932.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284065623|gb|ADB76561.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 311 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L G DLRS+Q +LGH+ L+TTQIYT+V +R+ ++ Q HP Sbjct: 256 PHGLRHSAATHVLEGGADLRSVQELLGHASLATTQIYTHVTVERLRAVHAQAHPRA 311 >gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99] Length = 296 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V ++++ +Y Q HP Sbjct: 234 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHPRAK 293 Query: 62 QKD 64 + + Sbjct: 294 KGE 296 >gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] Length = 308 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT V+ +M++Y+ +HP Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTAVDEVHLMKVYEASHPKA 307 >gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14] gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14] Length = 305 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 247 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKLLHQQHHPR 302 >gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 251 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 308 >gi|332678853|gb|AEE87982.1| Tyrosine recombinase xerD [Francisella cf. novicida Fx1] Length = 292 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLRS+Q +LGHS +STT IYT+++ R+ IY + HP Sbjct: 235 ISPHTLRHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQVIYQKHHPR 291 >gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] Length = 339 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 AH LRHS ATHL+ G D+R++Q +LGH+ LSTTQIYT+V+ KR+ + Y + HP Sbjct: 284 AHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTHVSMKRLADTYTRAHPRA 339 >gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] Length = 319 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGH+ L+TTQIYT+V+ +R+ + Y+Q HP Sbjct: 264 PHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIYTHVSVERLRKSYEQAHPRA 319 >gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] Length = 297 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H +RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 239 KLSPHVMRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 297 >gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1] gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1] Length = 304 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLR+IQ++LGH+ ++TT+IYT++ +R+ ++ HP Sbjct: 246 VTPHTLRHAFATHLLQNGADLRAIQTLLGHADIATTEIYTHILDERLRQLVLDHHPLAR 304 >gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e] gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland 1988] gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL R2-561] gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S] gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL F2-515] gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e] gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum PYR-GCK] gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittGG] gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG] gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2866] Length = 297 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+ G D+R IQ +LGH+ L TQ+YT+ + R+ EIY + HP Sbjct: 240 SPHVLRHTFATHLLNGGADMREIQELLGHASLQATQVYTHNSIARLREIYAKAHPREK 297 >gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1] gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1] Length = 300 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 306 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM ++ Q HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPR 305 >gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4] gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4] Length = 303 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ HP Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302 >gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR +Q +LGH+ +STTQIYT+V+S++++E+ + HP + Sbjct: 243 VSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300 >gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] Length = 319 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 36/62 (58%), Positives = 47/62 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 TTAHT RHSFATHL G D+RS+Q +LGH+ LSTTQIYT+++ K ++E Y HP I + Sbjct: 248 TTAHTFRHSFATHLFIGGADIRSVQELLGHTSLSTTQIYTHLDHKSIIEHYKAFHPQIVK 307 Query: 63 KD 64 K+ Sbjct: 308 KN 309 >gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568] gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399] gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196] Length = 305 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205] gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205] Length = 306 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM E++ + HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQELHSKHHPR 305 >gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] Length = 313 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL G DLRSIQ++LGH ++TT+IYT+V +R+ ++ + HP Sbjct: 248 KVTPHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDERLKQLVLEHHPLAQ 307 Query: 62 QK 63 + Sbjct: 308 NR 309 >gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei DM98] Length = 244 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 182 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 241 Query: 62 QKD 64 ++D Sbjct: 242 KRD 244 >gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] Length = 306 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] Length = 296 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294 Query: 63 KD 64 + Sbjct: 295 GE 296 >gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] Length = 310 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HT+RHSFATHLL G D+R +Q +LGHS LSTTQIYT+V+ + + E+Y++T P Sbjct: 237 KIHPHTIRHSFATHLLDAGMDIRVVQELLGHSSLSTTQIYTHVSQEHLREVYNRTCPRQE 296 Query: 62 -QKDKKN 67 +K +KN Sbjct: 297 FKKIEKN 303 >gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273] gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273] Length = 306 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E++ HP Sbjct: 248 NISPHTFRHTFATHLLEGGADLRAVQEMLGHSSIVATQIYTHIDRTFVKEVHRTCHPR 305 >gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 295 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS+ GDLRS+Q +LGHS LSTTQIYT+++ + ++YDQ HP Sbjct: 233 VDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 292 Query: 61 TQK 63 + Sbjct: 293 HKN 295 >gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A] gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A] Length = 313 Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 41/66 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ + + HP Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNI 301 Query: 62 QKDKKN 67 + +K+ Sbjct: 302 KFREKD 307 >gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149] gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33] Length = 305 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis LMG 19424] gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 349 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+ HP Sbjct: 268 VHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDKAHPRA 325 >gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] Length = 297 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296 >gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL J2-003] Length = 290 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 33/52 (63%), Positives = 41/52 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL NG DLRS+Q +LGH+ +STTQIYT+V R+ ++Y Sbjct: 239 PITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVY 290 >gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] Length = 297 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 NIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|257068193|ref|YP_003154448.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] gi|256559011|gb|ACU84858.1| site-specific recombinase XerD [Brachybacterium faecium DSM 4810] Length = 332 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHS ATHL+ G DLRS+Q LGHS L+TTQIYT+V+++R+ DQ HP Sbjct: 275 VTPHTLRHSAATHLVEGGADLRSVQDFLGHSSLATTQIYTHVSAERLRRTVDQAHPRA 332 >gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia K279a] gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 325 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 324 >gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans Agy99] gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99] Length = 302 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 302 >gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 298 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RHSFATHL+ G DLR++Q +LGH +STT+IYT+++ + + + HP Sbjct: 240 TISPHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTHLDRDYLRSVMIEFHPRA 298 >gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] Length = 300 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 319 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFA+H+L +G D+RS+Q +LGH LSTTQ YT++N +++M +YD+ HP Sbjct: 249 VHPHMLRHSFASHMLQSGADMRSVQELLGHEHLSTTQRYTHLNLQQIMNVYDKAHPLA 306 >gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR +Q +LGH+ +STTQIYT+V+S++++E+ + HP + Sbjct: 243 VSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300 >gi|332829855|gb|EGK02497.1| tyrosine recombinase XerD [Dysgonomonas gadei ATCC BAA-286] Length = 299 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G ++R+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHPRNK 298 Query: 62 Q 62 + Sbjct: 299 K 299 >gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] Length = 294 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N ++ ++Y + HP Sbjct: 237 ITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHPR 293 >gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] Length = 323 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGH+ LSTTQIYT+++ + + ++YD THP Sbjct: 253 VHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRAKL 312 Query: 63 KD 64 + Sbjct: 313 DE 314 >gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 295 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 45/56 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL G DLR++Q +LGH+ +STTQIYT++++ R+ EI+ Q HP Sbjct: 239 SPHTLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTHLHTARLQEIHRQAHPR 294 >gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH FA+H+LS GDLRS+Q +LGHS LSTTQIYT+++ + ++YD+ HP Sbjct: 242 VDLHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDRAHPRA 301 Query: 61 TQ 62 + Sbjct: 302 QK 303 >gi|162147966|ref|YP_001602427.1| tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 304 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L+ G DLR++Q +LGH+ ++TTQIYT+V ++R+ + + HP Sbjct: 240 SPHVLRHSFATHMLARGADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHPLARGG 299 Query: 64 DKK 66 D + Sbjct: 300 DGE 302 >gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] Length = 328 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH FA+H+L++G DLR +Q++LGH+ ++TTQIYT+V R+ + HP Sbjct: 262 VSPHVLRHCFASHMLAHGADLRGVQTLLGHADIATTQIYTHVLDDRLTTLVRTAHPLARL 321 Query: 63 KDKKN 67 K + N Sbjct: 322 KGEGN 326 >gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q ILGHS L+TTQ YT+V++ R+ ++Y + HP Sbjct: 242 IAPHGLRHSAATHLLQGGADLRAVQEILGHSSLATTQRYTHVDAGRLSDVYRRAHPRA 299 >gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHLL G DLR++Q +LGHS ++ T+IYT++ + R+++++ + HP Sbjct: 244 SISPHTFRHSFATHLLDGGADLRTVQLLLGHSDINATEIYTHIQAGRLVQLHKRFHPR 301 >gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442] gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|332526676|ref|ZP_08402778.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] Length = 310 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 45/59 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR++Q +LGH+ + TT IYT+V +R+ +++ + HP Sbjct: 251 VPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADIGTTTIYTHVARERLRQLHARHHPR 309 >gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] Length = 301 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 43/59 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL +G DLR +Q +LGHS LSTTQIYT+V R+ ++ + HP Sbjct: 242 VPLSPHTLRHAFATHLLDHGADLRVVQMLLGHSSLSTTQIYTHVARARLQSLHAEHHPR 300 >gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] Length = 307 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 47/64 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD HP ++ Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302 Query: 64 DKKN 67 ++ Sbjct: 303 KDED 306 >gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] Length = 295 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 41/55 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFATHLL NG DLR IQ +LGH+ +STTQIYT++ +R+ I+ + HP Sbjct: 240 PHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPR 294 >gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231] gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002] gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19] Length = 293 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H++RH+ ATH+L G DLR +Q +LGHS L+TTQIYT+V+S+R+ E + ++HP Sbjct: 238 PHSVRHTAATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQRLKEAFKRSHPRA 293 >gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] Length = 285 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+LRHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R++ ++ HP Sbjct: 222 ISPHSLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHPRSRD 281 Query: 63 KDK 65 +DK Sbjct: 282 RDK 284 >gi|333029569|ref|ZP_08457630.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] gi|332740166|gb|EGJ70648.1| Tyrosine recombinase xerC [Bacteroides coprosuis DSM 18011] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQS+LGH ++TT+IYT+++ + + + HP Sbjct: 246 NVSPHTFRHSFATHLLEGGANLRAIQSMLGHESITTTEIYTHLDKSLIRQEILEYHPRNK 305 >gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] Length = 294 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HL+ NG DL+S+Q ++GHS +STTQIY N+N ++ ++Y + HP Sbjct: 237 ITPHTLRHSFAAHLVQNGADLKSVQEMMGHSDISTTQIYMNMNVNKIRDVYMKAHPR 293 >gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR +Q +LGH+ +STTQIYT+V+S++++E+ + HP + Sbjct: 243 VSPHVLRHAFATHLLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSRHPLV 300 >gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710] gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190] gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 297 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296 >gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis MSMB43] Length = 320 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 261 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKMLHAANHPR 319 >gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] Length = 303 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V ++++ +Y Q HP Sbjct: 241 SIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHVTNQQLRNVYLQAHPRAK 300 Query: 62 QKD 64 + + Sbjct: 301 KGE 303 >gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP + Sbjct: 274 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGR 333 Query: 63 KD 64 K Sbjct: 334 KS 335 >gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 307 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT+V+S+R+ ++ HP Sbjct: 251 TPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHVSSERLRSVHHAAHPR 306 >gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii ATCC 12478] Length = 302 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLRAVHDQAHPRA 302 >gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] Length = 317 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 42/66 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 SISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKKN 67 + ++ Sbjct: 309 KYREEQ 314 >gi|114328726|ref|YP_745883.1| site-specific tyrosine recombinase XerC [Granulibacter bethesdensis CGDNIH1] gi|114316900|gb|ABI62960.1| integrase/recombinase (XerC/CodV family) [Granulibacter bethesdensis CGDNIH1] Length = 300 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHLL+ G DLR+IQ +LGH+ LSTTQ YT V+ +++ ++ + HP Sbjct: 242 ATPHALRHSFATHLLAAGADLRAIQDLLGHASLSTTQRYTQVDQAQLLAVWQKAHPRA 299 >gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3] Length = 312 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 46/61 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGHS +STTQ+YT+++ + + ++YD+ HP + Sbjct: 242 IHPHMLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQE 301 Query: 63 K 63 K Sbjct: 302 K 302 >gi|332286571|ref|YP_004418482.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] Length = 316 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP Sbjct: 253 VHVHPHSLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTRLDFQHLAQAYDQAHPRA 312 Query: 61 TQK 63 +K Sbjct: 313 GRK 315 >gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] Length = 325 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 268 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 324 >gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] Length = 303 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + E + HP Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALIKYHPRQK 298 >gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis MSMB43] Length = 306 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] Length = 301 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS AT +L G DLR +Q +LGH+ +STTQIYT+V ++R+ +++Q HP Sbjct: 245 SPHGLRHSAATAILEGGADLRVVQELLGHANMSTTQIYTHVGTERLKAVFNQAHPRA 301 >gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160] gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160] Length = 318 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ Q HP Sbjct: 260 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPR 317 >gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 246 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 304 >gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] Length = 300 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] Length = 298 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V + + Y + P Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA 298 >gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 298 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ +++Q HP Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHEQAHPRA 298 >gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] Length = 303 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q +LGHS LSTTQ YT+V++ R+ IY + HP Sbjct: 246 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 325 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGH+ L+TTQIYT+V+ +R+ Y Q HP Sbjct: 270 PHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTHVSIERLAASYAQAHPRA 325 >gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1] gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei K96243] gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 246 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 304 >gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084] gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084] Length = 308 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H +RH++AT LLS G DLRS+Q +LGHS LSTTQIYT+++ R+ Q HP Sbjct: 250 ITPHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQAHPR 306 >gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] Length = 343 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 39/55 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH FATHLL NG DLR IQ +LGH+ LSTTQ YT+++ KR+ +YD H Sbjct: 253 VHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTHLDWKRLAAVYDAAH 307 >gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ LS+TQIYT+++ + + ++YD HP + Sbjct: 241 IHPHKLRHSFATHILESSGDLRAVQELLGHASLSSTQIYTHLDFQHLTKVYDVAHPRAKR 300 >gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] Length = 332 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 40/61 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS+ATHLL G D+R++Q +LGH+ ++TTQ+YT V + E + HP Sbjct: 270 PISPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQVTVDSLRETHAGAHPRAR 329 Query: 62 Q 62 + Sbjct: 330 R 330 >gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] Length = 300 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGH+ L+TTQ+YT+V +R+ ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHTSLATTQLYTHVTVERLRAVHDQAHPRA 300 >gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945] gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304] gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHS+A HLL D+R++Q +LGHS LSTTQIYT ++ + +YD+ HP + Sbjct: 243 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKR 302 Query: 63 KDK 65 +D+ Sbjct: 303 QDE 305 >gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 293 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR +Q++LGH+ ++TTQIYT+V++ R++ + ++ HP Sbjct: 233 KVSPHVLRHAFATHLLEGGADLRVLQTLLGHADIATTQIYTHVDAARLVTLVNERHPLAR 292 >gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius UCC118] gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius UCC118] gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius CECT 5713] Length = 298 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V + + Y + P Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA 298 >gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] Length = 315 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G +R +Q +LGH+ ++TTQIYT V + + E++ +HP Sbjct: 250 VSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTAAVLREVFTLSHPRARG 309 Query: 63 KD 64 D Sbjct: 310 TD 311 >gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] Length = 309 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 42/64 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH++ATHLL G DLR +Q++LGH+ ++TTQIYT+V + + E+ + HP T Sbjct: 245 VYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMATA 304 Query: 63 KDKK 66 + Sbjct: 305 SKGR 308 >gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196] gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC 25196] Length = 318 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 47/63 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + G+LR++Q +LGH+ +STTQ+YT+++ + + ++YD THP + Sbjct: 255 IHPHVLRHSFASHVLQSSGNLRAVQEMLGHASISTTQVYTHLDFQHLSKVYDATHPRARK 314 Query: 63 KDK 65 K + Sbjct: 315 KKE 317 >gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRHSFATHL++ G DLRS+Q +LGHS ++TTQIYT+V++ R+ + + HP Sbjct: 248 AISPHVLRHSFATHLVAGGADLRSVQMMLGHSDIATTQIYTHVDADRLKSTHRRFHPR 305 >gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFA+HL+S G DLR++Q +LGH + TT+IYT+++ + + ++ HP Sbjct: 241 NVSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDDHYLKDTINKFHPRSK 300 Query: 62 QKDKK 66 +++ Sbjct: 301 GNEEE 305 >gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 305 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 48/64 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ + HP + Sbjct: 234 VSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHPLASM 293 Query: 63 KDKK 66 ++ Sbjct: 294 THRR 297 >gi|302525185|ref|ZP_07277527.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302434080|gb|EFL05896.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 307 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V R+ I+D+ HP Sbjct: 252 PHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVDRLKAIHDRAHPRA 307 >gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4] gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4] gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] Length = 319 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] Length = 298 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S H LRH+FATHL+SNG DLR++Q +LGHS LSTTQIYT+V + + Y + P Sbjct: 240 SIHPHELRHTFATHLMSNGADLRAVQELLGHSSLSTTQIYTHVTPEHLQRDYRKFFPRA 298 >gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida subsp. multocida str. Pm70] gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70] Length = 297 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 239 SLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKHLHERYHPR 296 >gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 297 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296 >gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis EO147] Length = 325 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 324 >gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] Length = 306 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2] gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2] Length = 279 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 ++ T H LRHSFATH+L G D+R IQ +LGH+ LSTTQIYT V +K + E ++ Sbjct: 214 INLTPHQLRHSFATHMLERGIDIRIIQELLGHASLSTTQIYTKVTTKHLKEAVEKA 269 >gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] Length = 294 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] Length = 314 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 256 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAMHHPR 313 >gi|296139371|ref|YP_003646614.1| integrase family protein [Tsukamurella paurometabola DSM 20162] gi|296027505|gb|ADG78275.1| integrase family protein [Tsukamurella paurometabola DSM 20162] Length = 298 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR +Q +LGHS L+TTQ+YT+V+ R+ ++Q HP Sbjct: 240 EVAPHGLRHTAATHLLDGGADLRVVQELLGHSSLATTQLYTHVSVARLRAAHEQAHPRA 298 >gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis G4] gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4] Length = 306 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQIYT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] Length = 324 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 250 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHPLAK 309 >gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c] Length = 298 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + + +YD HP + Sbjct: 237 INPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHPRAKR 296 Query: 63 KD 64 + Sbjct: 297 RK 298 >gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae L20] gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296 >gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] Length = 316 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + K Sbjct: 308 KYRKD 312 >gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296 >gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum STM815] gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 257 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAAHHPR 314 >gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18] gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18] Length = 422 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 AH LRHS ATHL+ G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP Sbjct: 367 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 422 >gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLRS+Q +LGH+ +STT IYT++ R+ ++ Q HP Sbjct: 238 VPLSPHTLRHAFATHLLNHGADLRSVQMLLGHADISTTTIYTHIARDRLASLHAQHHPR 296 >gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] Length = 324 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 48/66 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ + HP Sbjct: 250 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLENHPLAK 309 Query: 62 QKDKKN 67 +K+ Sbjct: 310 AAARKS 315 >gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKKN 67 + DK++ Sbjct: 302 RYDKEH 307 >gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] Length = 307 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAK 304 Query: 62 QKD 64 ++D Sbjct: 305 KRD 307 >gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] Length = 306 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM +++ HP Sbjct: 250 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQIRMQQLHAAHHPRA 306 >gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei DM98] Length = 299 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 240 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 298 >gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FA+HLL++G DLRSIQ +LGHS LSTTQIYT++ +R+ ++ + HP Sbjct: 239 KISPHTLRHAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ Q HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKVRLQQLHSQHHPR 304 >gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 304 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 246 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKFHPRA 304 >gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis C6786] Length = 325 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPR 324 >gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLKSLHQQFHPR 296 >gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] Length = 309 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG D+ IQ +LGH+ L+TTQIYT+V S+R+ I + HP Sbjct: 250 VSPHKLRHSFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASERLKSILLKFHP 305 >gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT+V R+ ++ + HP Sbjct: 242 SLSPHTLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHAEHHPR 299 >gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] Length = 327 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ HP Sbjct: 269 PLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALHHPR 326 >gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 303 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS+A+HLL + GD+R+IQ +LGHS LS TQIYT ++ R+ ++YD+ HP +K Sbjct: 240 SPHMMRHSYASHLLQSSGDIRAIQELLGHSNLSATQIYTKLDFDRLAQVYDRAHPRAKRK 299 Query: 64 D 64 Sbjct: 300 K 300 >gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 318 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 42/66 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR IQ++LGH + TT+IYT++ + + + HP Sbjct: 237 TISPHTLRHSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHPRNI 296 Query: 62 QKDKKN 67 + ++N Sbjct: 297 KYSEEN 302 >gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 303 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IY +V + E + HP Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQMMLGHENITTTEIYVHVEKSYLREALVKYHPRHK 298 >gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha proteobacterium EBAC2C11] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 45/64 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L+ G DLRS+QS+LGH+ +STTQIYT+ +R+ + HP +Q Sbjct: 252 VSPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPERLAGLVTSAHPLASQ 311 Query: 63 KDKK 66 + + Sbjct: 312 RQDR 315 >gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] Length = 312 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RH+FATHLL+ G DLRSIQ++LGH+ +STT+IYT+V +R+ ++ HP Sbjct: 253 KVTPHTMRHAFATHLLARGADLRSIQTLLGHADISTTEIYTHVLDERLKQLVLDHHPLA 311 >gi|117928754|ref|YP_873305.1| phage integrase family protein [Acidothermus cellulolyticus 11B] gi|117649217|gb|ABK53319.1| tyrosine recombinase XerC subunit [Acidothermus cellulolyticus 11B] Length = 336 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+ YD+ HP Sbjct: 281 PHGLRHSAATHLLEGGADLRSVQEILGHATLATTQLYTHVSIERLRATYDRAHPRA 336 >gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 TAH+LRHS ATHL+ G D+R +Q +LGHS ++TTQIYT V S+ + E+Y THP Sbjct: 254 VTAHSLRHSCATHLVEGGADIRIVQELLGHSSVTTTQIYTQVTSQALKEVYASTHPRAR 312 >gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFATH+L G +R +Q +LGH L TTQ Y V ++ + + Y + P Sbjct: 236 VTPHMLRHSFATHMLEGGASIRVVQELLGHESLITTQRYLTVTAEHLKQSYIEAFPRTRG 295 Query: 63 KD 64 D Sbjct: 296 DD 297 >gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367] gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367] Length = 311 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 33/59 (55%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLRS+Q +LGHS LSTTQIYT+V + + Y Q P T Sbjct: 243 IHPHMLRHTFATHLLNRGADLRSVQELLGHSSLSTTQIYTHVTREHLQRDYRQFFPRAT 301 >gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25] Length = 291 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RH+FATHLL +G DLR IQ +LGH+ +++T YT+V+ R+ + + HP Sbjct: 233 SISPHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G +R +Q +LGH+ ++TTQIYT V + + E++ +HP Sbjct: 250 VSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQVTATVLREVFTLSHPRARG 309 Query: 63 KD 64 D Sbjct: 310 TD 311 >gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243] gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243] gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] Length = 323 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT+++ R+ +++ +THP Sbjct: 265 SLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHPR 322 >gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] Length = 298 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHL+ G LR++Q +LGH ++TT+IYT+++ + +I + HP Sbjct: 240 NVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYTHLDRDYLRQIITEFHPR 297 >gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis TXDOH] Length = 306 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis EO147] Length = 306 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH+F THLL G DLR+IQ +LGH RL+TTQ YT ++++ ++E+YD+THP Sbjct: 242 VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPRAK 300 >gi|328957573|ref|YP_004374959.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4] gi|328673897|gb|AEB29943.1| tyrosine recombinase XerC [Carnobacterium sp. 17-4] Length = 191 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL+NG D+R++Q +LGH+ LS+TQIY +V + + Y Q HP Sbjct: 134 IHPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAHVTKDLLQKNYRQFHPRA 191 >gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 45/64 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQ+YT ++ +R+ ++YDQ HP + Sbjct: 267 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPRARK 326 Query: 63 KDKK 66 K Sbjct: 327 NGGK 330 >gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296 >gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38] gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38] Length = 299 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG DLRSIQ +LGH ++TT++Y +++ K + E+ + HP Sbjct: 241 TISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMHLDRKFLSEVLNNYHPR 298 >gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis Bt4] gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264] Length = 306 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] Length = 318 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 259 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHPRAR 318 >gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FA+HL+ NG DLR IQ +LGH+ ++TTQIYT+VN K + EI+ + HP Sbjct: 245 KVYPHLLRHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPR 302 >gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] Length = 304 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 242 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQAFFPRAK 301 Query: 62 QK 63 +K Sbjct: 302 KK 303 >gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] Length = 318 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATHL+ G D+R++Q +LGH+ ++TTQIYT+V+ + ++E Y HP Sbjct: 259 PLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAYLTAHPRAR 318 >gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] Length = 285 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q +LGHS LSTTQ YT+V++ R+ IY + HP Sbjct: 228 IAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 285 >gi|254780490|ref|YP_003064903.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040167|gb|ACT56963.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 67 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI Sbjct: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 Query: 61 TQKDKKN 67 TQKDKKN Sbjct: 61 TQKDKKN 67 >gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2] gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans CJ2] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGH+ +STT IYT+V +R+ I+ + HP Sbjct: 242 PLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIHAEHHPR 299 >gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296 >gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21193] Length = 298 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103] gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103] Length = 297 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPRA 297 >gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ST398] Length = 298 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 44/61 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RH+FATHLL G DLRSIQ++LGH+ ++TT+IYT+V +R+ ++ + HP Sbjct: 247 FKATPHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDERLKKLVLEYHPLA 306 Query: 61 T 61 Sbjct: 307 K 307 >gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] Length = 300 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHPR 299 >gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132] gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus CGS01] gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA131] gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA177] gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus T0131] gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21189] Length = 298 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 299 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG D+R++Q +LGH+ LS+TQIYT+V + + + Y +HP Sbjct: 241 KIYPHMLRHTFATHLLNNGADMRTVQELLGHANLSSTQIYTHVTKEALRKTYMNSHPRA 299 >gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] Length = 315 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKKN 67 + DK++ Sbjct: 302 RYDKEH 307 >gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] Length = 308 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHS+ATH+L G DLRSIQ ILGHS + TT+IYT+V +K++ + Y++ +P +Q Sbjct: 237 ITPHKLRHSYATHMLQGGADLRSIQEILGHSNIQTTEIYTHVQNKQLFDAYNKFNPLASQ 296 Query: 63 K 63 Sbjct: 297 N 297 >gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 288 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 1/66 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHL+ +G DLRS+Q +LGHS ++TT+IYT+V+S + + + HP T Sbjct: 223 NVYPHTLRHSFATHLIQHGADLRSVQRMLGHSDITTTEIYTHVDSTHLKKQIAK-HPKYT 281 Query: 62 QKDKKN 67 + ++N Sbjct: 282 KHTRQN 287 >gi|254713562|ref|ZP_05175373.1| site-specific tyrosine recombinase XerD [Brucella ceti M644/93/1] gi|254716083|ref|ZP_05177894.1| site-specific tyrosine recombinase XerD [Brucella ceti M13/05/1] Length = 307 Score = 108 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|254718076|ref|ZP_05179887.1| site-specific tyrosine recombinase XerD [Brucella sp. 83/13] gi|306837278|ref|ZP_07470164.1| tyrosine recombinase XerD [Brucella sp. NF 2653] gi|306407650|gb|EFM63843.1| tyrosine recombinase XerD [Brucella sp. NF 2653] Length = 307 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] Length = 299 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHS ATH+L + DLR++Q +LGH+ +STTQIYT+++ + + + YD HP +K Sbjct: 238 HPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRARKK 297 Query: 64 DK 65 + Sbjct: 298 KE 299 >gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2] gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2] gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2] Length = 319 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] Length = 294 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 42/64 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+NG D++++Q +LGH LS+TQIYT+V + + Y P Sbjct: 219 LKIHPHMLRHTFATHLLNNGADMKTVQELLGHVSLSSTQIYTHVTKDALQQNYQLYFPRA 278 Query: 61 TQKD 64 Q++ Sbjct: 279 KQEE 282 >gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL J2-003] Length = 259 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 201 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 259 >gi|220920293|ref|YP_002495594.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|259710433|sp|B8I9N8|XERC_METNO RecName: Full=Tyrosine recombinase xerC gi|219944899|gb|ACL55291.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 322 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 34/61 (55%), Positives = 45/61 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL+ GDLR+IQ +LGH+ L+TTQ+YT V+S R++ +D HP Sbjct: 259 SATPHALRHSFATHLLARQGDLRAIQDLLGHASLATTQVYTKVDSARLLSAFDAAHPRAG 318 Query: 62 Q 62 + Sbjct: 319 R 319 >gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 300 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHL++NG D+R++Q +LGH+ LS+TQ+YT+V ++ + + Y HP Sbjct: 242 KIHPHMLRHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTNEYLKKTYMAHHPRA 300 >gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15] Length = 310 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 45/62 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ+HP Sbjct: 238 KLHPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHPRAR 297 Query: 62 QK 63 + Sbjct: 298 RD 299 >gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 322 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + Y Q P Sbjct: 265 ISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322 >gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHS ATHLL G DLRS+Q +LGH+ + +TQIYT+V+++R+ Y Q HP Sbjct: 259 SLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHVSAERLRGAYRQAHPRA 317 >gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 318 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V ++R+ ++ Q HP Sbjct: 262 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYVATERLKMLHQQHHPR 317 >gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122] gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122] Length = 298 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] Length = 306 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLARIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1] gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22] gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1] gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A] gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22] Length = 319 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATH+L+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHMLNEGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKK 294 Query: 63 KD 64 + Sbjct: 295 EK 296 >gi|148559822|ref|YP_001259843.1| site-specific tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163844051|ref|YP_001628455.1| site-specific tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|254700665|ref|ZP_05162493.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 5 str. 513] gi|254707447|ref|ZP_05169275.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M163/99/10] gi|254709011|ref|ZP_05170822.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis B2/94] gi|256030536|ref|ZP_05444150.1| site-specific tyrosine recombinase XerD [Brucella pinnipedialis M292/94/1] gi|256059999|ref|ZP_05450181.1| site-specific tyrosine recombinase XerD [Brucella neotomae 5K33] gi|256158528|ref|ZP_05456422.1| site-specific tyrosine recombinase XerD [Brucella ceti M490/95/1] gi|256253942|ref|ZP_05459478.1| site-specific tyrosine recombinase XerD [Brucella ceti B1/94] gi|256370430|ref|YP_003107941.1| tyrosine recombinase [Brucella microti CCM 4915] gi|260169442|ref|ZP_05756253.1| site-specific tyrosine recombinase XerD [Brucella sp. F5/99] gi|148371079|gb|ABQ61058.1| tyrosine recombinase XerD [Brucella ovis ATCC 25840] gi|163674774|gb|ABY38885.1| tyrosine recombinase XerD [Brucella suis ATCC 23445] gi|256000593|gb|ACU48992.1| tyrosine recombinase [Brucella microti CCM 4915] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] Length = 305 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 39/58 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL G DLR++Q +LGHS + TQIYT+++ + E + HP Sbjct: 247 KISPHTLRHTFATHLLEGGADLRAVQEMLGHSSIIATQIYTHIDRSFIKEAHKTFHPR 304 >gi|126666597|ref|ZP_01737575.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] gi|126628985|gb|EAZ99604.1| Tyrosine recombinase XerC [Marinobacter sp. ELB17] Length = 324 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 46/62 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ+HP Sbjct: 258 KLHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLASVYDQSHPRAK 317 Query: 62 QK 63 ++ Sbjct: 318 RR 319 >gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] Length = 299 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 241 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHPR 298 >gi|306843458|ref|ZP_07476059.1| tyrosine recombinase XerD [Brucella sp. BO1] gi|306276149|gb|EFM57849.1| tyrosine recombinase XerD [Brucella sp. BO1] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 345 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ YT ++ + + +IYD HP Sbjct: 265 PVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITTTQAYTRLDFQHLAKIYDAAHPRA 323 >gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis C6786] Length = 306 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99] gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99] Length = 308 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT+RH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 251 ISPHTMRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 307 >gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9] gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria AMMD] gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD] Length = 322 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Sbjct: 266 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHATHHPR 321 >gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601] gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601] Length = 308 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL+ GGDLR+IQ +LGH+ LSTTQ YT+V+ +M++Y THP Sbjct: 249 TATPHAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYTSVDEVHLMKVYAATHPKA 307 >gi|23502879|ref|NP_699006.1| site-specific tyrosine recombinase XerD [Brucella suis 1330] gi|161619947|ref|YP_001593834.1| site-specific tyrosine recombinase XerD [Brucella canis ATCC 23365] gi|254705035|ref|ZP_05166863.1| site-specific tyrosine recombinase XerD [Brucella suis bv. 3 str. 686] gi|23348908|gb|AAN30921.1| integrase/recombinase XerD [Brucella suis 1330] gi|161336758|gb|ABX63063.1| tyrosine recombinase XerD [Brucella canis ATCC 23365] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] Length = 310 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRHS ATHL+ G D+R +Q +LGH+ ++TTQIYT+++ + ++E Y HP Sbjct: 251 EVHPHTLRHSCATHLIQGGADVRMVQELLGHASVTTTQIYTHISPQTLIESYMGAHPRA 309 >gi|261217851|ref|ZP_05932132.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261321299|ref|ZP_05960496.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] gi|260922940|gb|EEX89508.1| tyrosine recombinase xerD [Brucella ceti M13/05/1] gi|261293989|gb|EEX97485.1| tyrosine recombinase xerD [Brucella ceti M644/93/1] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] Length = 297 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++++ HP Sbjct: 241 SPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHERYHPR 296 >gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] Length = 218 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ + R+ E+Y + HP Sbjct: 160 EITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHPR 217 >gi|225853465|ref|YP_002733698.1| site-specific tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|256045632|ref|ZP_05448510.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. Rev.1] gi|256112356|ref|ZP_05453277.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 3 str. Ether] gi|225641830|gb|ACO01744.1| tyrosine recombinase XerD [Brucella melitensis ATCC 23457] gi|326410027|gb|ADZ67092.1| site-specific tyrosine recombinase XerD [Brucella melitensis M28] gi|326539743|gb|ADZ87958.1| tyrosine recombinase XerD [Brucella melitensis M5-90] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 249 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] Length = 304 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 40/54 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++ATH+L G DLRS+Q +LGHS ++TTQIYT+++ R+ YD+ Sbjct: 235 PITPHKLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTHIDRSRLRTAYDE 288 >gi|332886009|gb|EGK06253.1| tyrosine recombinase XerD [Dysgonomonas mossii DSM 22836] Length = 299 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G ++R+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 239 TISPHTFRHSFATHLLEGGANIRAIQLMLGHEKITTTEIYTHMDREYLRQEIIEHHPRNR 298 Query: 62 Q 62 + Sbjct: 299 R 299 >gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] Length = 241 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 183 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 241 >gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] Length = 322 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + Y Q P Sbjct: 265 ISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322 >gi|265983027|ref|ZP_06095762.1| tyrosine recombinase xerD [Brucella sp. 83/13] gi|264661619|gb|EEZ31880.1| tyrosine recombinase xerD [Brucella sp. 83/13] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] Length = 294 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354] Length = 299 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ +++ Y HP Sbjct: 233 NATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTEVDAASLLDTYRNAHPREK 292 Query: 62 QKDKK 66 + ++ Sbjct: 293 KAPER 297 >gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] Length = 308 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ + + HP Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNI 301 Query: 62 QKDKK 66 + +K Sbjct: 302 KFREK 306 >gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans 621H] gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC [Gluconobacter oxydans 621H] Length = 321 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHL+ G DLR+IQ ++GH+ LSTTQ YT + K +++++ + HP Sbjct: 259 SATPHALRHSFATHLMEGGADLRTIQELMGHASLSTTQAYTLADEKHLLDVWRKAHPRAG 318 Query: 62 QKD 64 Q+ Sbjct: 319 QES 321 >gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 351 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 294 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 351 >gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] Length = 295 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + ++YD HP Sbjct: 235 VHPHMLRHSFASHVLQSSGDLRAVQEMLGHASIASTQVYTHLDFQHLAKVYDAAHPRAKS 294 Query: 63 K 63 K Sbjct: 295 K 295 >gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] Length = 306 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ + HP Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300 >gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 43/64 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL++G D+R++Q +LGHS LS+TQIYT+++ + + Y + P Sbjct: 239 LDIHPHKLRHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTHMSKESLRNNYLKYFPRA 298 Query: 61 TQKD 64 D Sbjct: 299 KHSD 302 >gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp. aureus ED133] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC] gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC] Length = 299 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ +++ Q HP Sbjct: 241 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKQLHAQHHPR 298 >gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|225626413|ref|ZP_03784452.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|261221082|ref|ZP_05935363.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261314935|ref|ZP_05954132.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261316509|ref|ZP_05955706.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261323973|ref|ZP_05963170.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261751173|ref|ZP_05994882.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|261758967|ref|ZP_06002676.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|265987583|ref|ZP_06100140.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|265997042|ref|ZP_06109599.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|294851262|ref|ZP_06791935.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] gi|225618070|gb|EEH15113.1| tyrosine recombinase XerD [Brucella ceti str. Cudo] gi|260919666|gb|EEX86319.1| tyrosine recombinase xerD [Brucella ceti B1/94] gi|261295732|gb|EEX99228.1| tyrosine recombinase xerD [Brucella pinnipedialis B2/94] gi|261299953|gb|EEY03450.1| tyrosine recombinase xerD [Brucella neotomae 5K33] gi|261303961|gb|EEY07458.1| tyrosine recombinase xerD [Brucella pinnipedialis M163/99/10] gi|261738951|gb|EEY26947.1| tyrosine recombinase xerD [Brucella sp. F5/99] gi|261740926|gb|EEY28852.1| tyrosine recombinase xerD [Brucella suis bv. 5 str. 513] gi|262551510|gb|EEZ07500.1| tyrosine recombinase xerD [Brucella ceti M490/95/1] gi|264659780|gb|EEZ30041.1| tyrosine recombinase xerD [Brucella pinnipedialis M292/94/1] gi|294819851|gb|EFG36850.1| tyrosine recombinase XerD [Brucella sp. NVSL 07-0026] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL+NG ++ IQ +LGH+ LSTTQIYT++ ++++ + + HP Sbjct: 249 KISPHKLRHSFATHLLNNGSNIIFIQKMLGHANLSTTQIYTHIANEKLKNVLLKFHPLNN 308 Query: 62 Q 62 + Sbjct: 309 E 309 >gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4] gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA] gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ + + HP Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPRNI 301 Query: 62 QKDKK 66 + +K Sbjct: 302 KFREK 306 >gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG +L +++ +LGHS L++T+IYT++ + + + Y Q HP Sbjct: 243 SPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299 >gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] Length = 294 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619] gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619] Length = 299 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|73662825|ref|YP_301606.1| integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATH+L+ G DLR++QS+LGH LSTT YT+V ++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHMLNQGADLRTVQSLLGHVNLSTTGRYTHVTNEQLRKVYLNAHPRAK 293 Query: 62 QKD 64 +++ Sbjct: 294 KEN 296 >gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH60] gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus CGS00] gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11] gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] Length = 324 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 44/60 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V R+ E+ HP Sbjct: 250 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEARLSELVLDNHPLAK 309 >gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 327 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS AT +L G DLR +Q +LGH+ L+TTQIYT+V+S+R+ +++Q HP Sbjct: 270 VSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAK 304 Query: 62 QKD 64 ++D Sbjct: 305 KRD 307 >gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] Length = 293 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFA+HLL G DLRS+Q +LGH+ ++TTQIYT+V +R+ E++ HP Sbjct: 235 NIKPHGLRHSFASHLLEAGADLRSVQLMLGHADITTTQIYTHVTRERLKELHGTCHPR 292 >gi|256824962|ref|YP_003148922.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688355|gb|ACV06157.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] Length = 336 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH++ G D+RS+Q +LGH+ L+TTQ+YT+V+ +R+ E +D++HP Sbjct: 281 PHGLRHSAATHMVDAGADIRSVQELLGHASLATTQVYTHVSVERLREAFDRSHPRA 336 >gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37] gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37] Length = 311 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 45/60 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ ++ HP Sbjct: 251 EVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRDLVLDHHPLAK 310 >gi|332670384|ref|YP_004453392.1| integrase family protein [Cellulomonas fimi ATCC 484] gi|332339422|gb|AEE46005.1| integrase family protein [Cellulomonas fimi ATCC 484] Length = 322 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATH+L+ G D+R +Q +LGH+ +STTQIY + + E Y HP Sbjct: 264 ISPHTLRHSFATHMLARGADVRVVQELLGHASVSTTQIYATARDEALREAYTAAHPHAR 322 >gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] Length = 327 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 48/65 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V +R+ ++ + HP Sbjct: 253 KVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEERLSDLVLERHPLAK 312 Query: 62 QKDKK 66 +K Sbjct: 313 DGTRK 317 >gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] Length = 308 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 251 ISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 308 >gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus JKD6159] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG DL SI+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|260567497|ref|ZP_05837967.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261755736|ref|ZP_05999445.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] gi|34222805|sp|Q7ZAN6|XERD_BRUSU RecName: Full=Tyrosine recombinase xerD gi|260157015|gb|EEW92095.1| tyrosine recombinase xerD [Brucella suis bv. 4 str. 40] gi|261745489|gb|EEY33415.1| tyrosine recombinase xerD [Brucella suis bv. 3 str. 686] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus MW2] gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2] gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus N315] gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299] gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115] gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1] gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315] gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu50] gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299] gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115] gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981] gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp. aureus CGS03] gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21172] Length = 298 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] Length = 331 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + YDQ HP + Sbjct: 270 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGR 329 Query: 63 KD 64 K Sbjct: 330 KS 331 >gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2] gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2] Length = 297 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR++Q +LGHS LSTTQIYT+V +R+ I+ Q HP Sbjct: 241 SPHGLRHAFATHLINHGADLRTVQLLLGHSDLSTTQIYTHVAKERLQSIHHQHHPR 296 >gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium intracellulare ATCC 13950] Length = 232 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 177 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 232 >gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 308 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 251 ISPHALRHSAATHMLDGGADLREVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 308 >gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5] gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5] Length = 286 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATH+L G D+R IQ +LGHS LSTTQIYT V++K + E + Sbjct: 221 VELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276 >gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 301 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FAT LL NG DL +++ ILGHS LS+TQIYT+ + + + ++++ HP +K Sbjct: 239 SPHVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSSIQNLKKVFNNAHPRGRKK 298 Query: 64 DK 65 D+ Sbjct: 299 DE 300 >gi|17986324|ref|NP_538958.1| site-specific tyrosine recombinase XerD [Brucella melitensis bv. 1 str. 16M] gi|260562936|ref|ZP_05833422.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|265992055|ref|ZP_06104612.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|265993791|ref|ZP_06106348.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|265999264|ref|ZP_06111622.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] gi|34222943|sp|Q8YJP2|XERD_BRUME RecName: Full=Tyrosine recombinase xerD gi|17981909|gb|AAL51222.1| integrase/recombinase xerd [Brucella melitensis bv. 1 str. 16M] gi|260152952|gb|EEW88044.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. 16M] gi|262764772|gb|EEZ10693.1| tyrosine recombinase xerD [Brucella melitensis bv. 3 str. Ether] gi|263003121|gb|EEZ15414.1| tyrosine recombinase xerD [Brucella melitensis bv. 1 str. Rev.1] gi|263092931|gb|EEZ17106.1| tyrosine recombinase xerD [Brucella melitensis bv. 2 str. 63/9] Length = 309 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] Length = 307 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 41/55 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V R+ E HP Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVADHHP 297 >gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] Length = 316 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFATHLL G +R +Q +LGH+ ++TTQIYT V + + E++ +HP Sbjct: 250 VSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTRVTATVLREVFTVSHPRARG 309 Query: 63 KDK 65 D+ Sbjct: 310 TDE 312 >gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] Length = 297 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+ ++ ++Y HP + Sbjct: 235 IHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGRYTHVSKDQLRKVYLNAHPRAKK 294 Query: 63 KDK 65 + Sbjct: 295 ERN 297 >gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 322 Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + Y Q P Sbjct: 265 ISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322 >gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] Length = 321 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H+LRHS+ATHLL G DLR++Q +LGH+ +STTQ+YT+V+ + Y HP ++ Sbjct: 259 HPHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTHVDRTHVRMAYLAAHPRADRR 318 >gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1] gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4] Length = 294 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HL+SNG DL+S+Q +LGHS +STTQIY+ + R+ E+Y + HP Sbjct: 236 EITPHTLRHSFAAHLISNGADLKSVQEMLGHSDISTTQIYSQMGQGRIREVYLKAHPR 293 >gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18] gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18] Length = 314 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 44/64 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDK 65 Q ++ Sbjct: 302 QYNE 305 >gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378] Length = 300 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99] Length = 300 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ L++TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei K96243] gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 14] gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 91] gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 9] gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei B7210] gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 112] gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243] gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] Length = 310 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 248 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 307 Query: 62 QKD 64 ++D Sbjct: 308 KRD 310 >gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262] gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262] Length = 300 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii] gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii] Length = 299 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 44/60 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL G DLRS+Q++LGH+ ++TTQIYT+V+S ++ +I+ P + Sbjct: 239 SPHMLRHSFATHLLQRGADLRSVQAMLGHADIATTQIYTHVDSSQLKKIHTACFPRNRSR 298 >gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] Length = 302 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 42/56 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGHS +STTQIYT V +R+ +++ HP Sbjct: 246 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVARERLKKLHAAHHPR 301 >gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 309 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HTLRH+FATHLL+N ++R +Q +LGH ++TTQ YT+V + R+ E+Y++ HP Sbjct: 248 IDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNKFHP 305 >gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria AMMD] gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD] Length = 306 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|332187766|ref|ZP_08389500.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332012116|gb|EGI54187.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 292 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 43/57 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 TT H LRHSFATHLL G DLR +Q +LGH+ LS+TQIYT V++ R+++IY HP Sbjct: 235 TTPHALRHSFATHLLGRGADLRQLQELLGHASLSSTQIYTAVDAARLLDIYRTAHPR 291 >gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC 23344] gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10229] gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 7894] gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei NCTC 13177] gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344] gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229] gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] Length = 310 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 248 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 307 Query: 62 QKD 64 ++D Sbjct: 308 KRD 310 >gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] Length = 313 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 43/59 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+NG DLR+IQ++LGH+ ++TT+IYT+V + + ++ HP Sbjct: 254 VSPHKLRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQHLKDLVLTHHPLAK 312 >gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 307 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + + Y + HP Sbjct: 242 VSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKG 301 Query: 63 KDKKN 67 + Sbjct: 302 NSNEE 306 >gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 307 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + + Y + HP Sbjct: 242 VSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKG 301 Query: 63 KDKKN 67 + Sbjct: 302 NSNEE 306 >gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 346 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 33/65 (50%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H++RH+FAT LLS G DLRS+Q +LGHS LSTTQIYT+V+ M Q HP Sbjct: 280 TLSPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTHVSIDAMKRAVKQAHPRAE 339 Query: 62 QKDKK 66 + K+ Sbjct: 340 AETKR 344 >gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 297 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L G LR +Q +LGH L TTQ Y ++ +++ + Y HP Sbjct: 234 VSPHMLRHSFATHMLEGGASLRVLQELLGHQSLVTTQRYLKISYEQLKKSYINAHPRGRG 293 Query: 63 KD 64 + Sbjct: 294 EK 295 >gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] Length = 319 Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 STT H LRHSFATHL G D+R IQ +LGH LSTTQIYT+++ K +++ Y HP Sbjct: 254 STTPHALRHSFATHLFLEGADIRVIQELLGHENLSTTQIYTHLDHKSIIDNYMGFHPQTV 313 Query: 62 QKD 64 +K+ Sbjct: 314 KKN 316 >gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS] gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS] gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS] gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS] Length = 300 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 292 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L+NG L ++Q +LGH L TT+IYT+ +++ ++Y++ HP Sbjct: 236 TPHVLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTHTTFEQLKKVYEKAHPRA 292 >gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] Length = 306 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 303 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 45/61 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH+ RHSFATHLL G DLR +Q +LGH+ ++TTQIYT++ +KR+ + Y HP ++ Sbjct: 238 SAHSFRHSFATHLLDGGADLRVVQELLGHADIATTQIYTHIQNKRLQDAYASFHPRSKEE 297 Query: 64 D 64 D Sbjct: 298 D 298 >gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 295 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 294 >gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii] Length = 295 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 294 >gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] Length = 319 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 249 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNVLRSEIIEHHPRNI 308 Query: 62 QKDKK 66 + K+ Sbjct: 309 KYRKE 313 >gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] Length = 306 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+FATHLL+ G DLRSIQ++LGH+ ++TT+IYT+V +R+ ++ Q HP Sbjct: 244 VTPHVLRHAFATHLLAGGADLRSIQTMLGHADIATTEIYTHVLDQRLTDLVLQHHPLAK 302 >gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] Length = 308 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ ++TTQIYT+V +R+ ++ + HP Sbjct: 247 KLSPHVLRHAFASHLLQNGADLRAVQQLLGHADIATTQIYTHVLEERLRDLVETAHPLA 305 >gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM 12804] gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii] Length = 326 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + + YDQ HP + Sbjct: 265 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLAKAYDQAHPRAGR 324 Query: 63 KD 64 K Sbjct: 325 KS 326 >gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383] gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383] Length = 306 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] Length = 306 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 295 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 294 >gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] Length = 311 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V + R+ ++ Q HP Sbjct: 255 SPHTLRHAFATHLLNHGADLRVLQMLLGHADLSTTQIYTHVATTRLKALHAQHHPR 310 >gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] Length = 307 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAK 304 Query: 62 QKD 64 ++D Sbjct: 305 KRD 307 >gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 294 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA HLL NG DL+SIQ +LGHS +S+TQIY + R +Y++ HP Sbjct: 237 ITPHTLRHSFAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRLVYNKCHPKA 294 >gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS] gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS] Length = 300 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 245 PHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] Length = 315 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL G DLRSIQ++LGH+ + TT+IYT+V R+ + HP + Sbjct: 250 KVTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRALVLDHHPLVQ 309 Query: 62 QKD 64 +D Sbjct: 310 PRD 312 >gi|306819226|ref|ZP_07452937.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|307700216|ref|ZP_07637257.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris FB024-16] gi|304648008|gb|EFM45322.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|307614598|gb|EFN93826.1| site-specific tyrosine recombinase XerC [Mobiluncus mulieris FB024-16] Length = 361 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++ + ++Y Q HP Sbjct: 306 PHGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTAHLRQVYLQAHPHA 361 >gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] Length = 305 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR++QS+LGH+ + TTQIYT+V+S+R++E+ + HP Sbjct: 234 VSPHVLRHAFATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSRHPLA 291 >gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] Length = 295 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA+HL+ NG DL+S+Q +LGHS +STTQIY +KR+ E+Y + HP Sbjct: 239 TPHTLRHSFASHLVENGADLKSVQEMLGHSDISTTQIYMTSGNKRVREVYAKAHPKA 295 >gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN] gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae Br4923] gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae] gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 297 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 242 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHPRA 297 >gi|306842844|ref|ZP_07475484.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] gi|306287038|gb|EFM58549.1| site-specific tyrosine recombinase XerD [Brucella sp. BO2] Length = 247 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 189 VSPHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 246 >gi|148553149|ref|YP_001260731.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498339|gb|ABQ66593.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 308 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHSFATHLL G DLRS+Q +LGH+ LS+TQ+YT V++ +M++Y HP Sbjct: 251 TTPHALRHSFATHLLGRGADLRSLQELLGHASLSSTQVYTGVDAAHLMDVYRNAHPRA 308 >gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] Length = 306 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 44/64 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT +L++G DLR +Q +LGH L +TQIYT+V+ +++ E Y QTHP Sbjct: 241 AIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPRNQ 300 Query: 62 QKDK 65 +K Sbjct: 301 HNEK 304 >gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] Length = 301 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG +LR+IQ +LGH ++TT+IYT+++ + ++ + HP Sbjct: 243 TISPHTFRHSFATHLLENGANLRAIQLMLGHESITTTEIYTHIDHSYLSQVVNTYHPR 300 >gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 293 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H+LRHSFAT LL G DLR++Q +LGH LSTT YT+V+++R+ IY THP Sbjct: 235 PLTPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >gi|332304595|ref|YP_004432446.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] Length = 298 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQ+YT++N + + +YD HP + Sbjct: 237 INPHKLRHSFATHILESSGDLRGVQELLGHANLSTTQVYTHLNFQHLASVYDTAHPRAKR 296 Query: 63 KD 64 + Sbjct: 297 RK 298 >gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 292 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+ ATHLL G DLRS+Q ILGH+ L+TTQ+YT+V+ +R+ Y Q HP Sbjct: 237 PHGIRHTMATHLLEGGADLRSVQEILGHASLATTQLYTHVSIERLRAAYRQAHPRA 292 >gi|78189718|ref|YP_380056.1| phage/XerD family site-specific recombinase [Chlorobium chlorochromatii CaD3] gi|78171917|gb|ABB29013.1| site-specific recombinase, phage/XerD family [Chlorobium chlorochromatii CaD3] Length = 338 Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 43/56 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL++G DL S+ +LGHS L+TT++YT+V +R+ E+Y + HP+ Sbjct: 283 PHLLRHTFATHLLNSGADLESVSEMLGHSNLATTELYTHVTFERLKEVYRKAHPNA 338 >gi|332291018|ref|YP_004429627.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 295 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 44/62 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T+ H LRHSFATHLL+ G DL ++ +LGH+ L++TQ+YT+ + + + ++Y + HP Sbjct: 234 LKTSPHILRHSFATHLLNQGADLNIVKELLGHASLASTQVYTHNSVQALKDVYSKAHPRN 293 Query: 61 TQ 62 + Sbjct: 294 KK 295 >gi|332528836|ref|ZP_08404810.1| phage integrase [Hylemonella gracilis ATCC 19624] gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624] Length = 369 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR++Q +LGH+ + TTQ+YT ++ + + YD HP Sbjct: 297 PVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTTQVYTRLDFQHLARAYDDAHPRAK 356 >gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21] gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21] Length = 292 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 46/60 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G DLR++Q++LGH+ ++TTQIYT+V++ R++++ ++ HP Sbjct: 228 KLSPHVLRHAFATHLLEGGADLRALQTLLGHADIATTQIYTHVDAARLVKLVNERHPLAQ 287 >gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] Length = 297 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFA+HL+ G DLR++Q +LGH ++TT+IYT+++ + + Q HP Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAVITQYHPR 296 >gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5] gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5] Length = 349 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 46/63 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ ++ ++YD+ HP T Sbjct: 283 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHVS 342 Query: 65 KKN 67 K + Sbjct: 343 KDS 345 >gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 297 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 34/58 (58%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRHSFATHLLS G DLRS+Q +LGHS LSTTQIYT+++ R+ E + P Sbjct: 235 IEAKVHTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQIYTHIDDSRLEESHRDFFP 292 >gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 324 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT ++ + + YDQ HP + Sbjct: 263 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTRLDFQHLARAYDQAHPRAGR 322 Query: 63 KD 64 K Sbjct: 323 KS 324 >gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 334 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 41/64 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FATHLL G DLR +Q++LGH+ +STTQIYT+V R+ + HP Sbjct: 270 SPHVLRHAFATHLLDRGVDLRVLQTLLGHADISTTQIYTHVMEDRLRQTVFDFHPLSEGA 329 Query: 64 DKKN 67 +K Sbjct: 330 AEKE 333 >gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] Length = 307 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL + GDLR++Q +LGH+ L+TTQ+YT+++ + + ++YD HP ++ Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302 Query: 64 DKKN 67 + Sbjct: 303 KDDD 306 >gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] Length = 299 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V RM + + HP Sbjct: 241 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARLRMKHQHAEHHPR 298 >gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] Length = 308 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ +++ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLSQLHSEHHPR 307 >gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023] Length = 300 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKSTYMKHHPRA 300 >gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] Length = 306 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 249 ISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 306 >gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + GDLR++Q +LGH+ ++ TQIYT+++ +R+ ++YD HP + Sbjct: 257 VHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQRLAQVYDAAHPRAKK 316 Query: 63 KD 64 K Sbjct: 317 KP 318 >gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] Length = 345 Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 46/63 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+H+LS GDLR++Q +LGHS +STTQIYT+V+ ++ ++YD+ HP T Sbjct: 279 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHAS 338 Query: 65 KKN 67 K + Sbjct: 339 KDS 341 >gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] Length = 300 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V R+ IY QTHP Sbjct: 243 VSPHVLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLRHIYLQTHPRA 300 >gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] Length = 297 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFA+HL+ G DLR++Q +LGH ++TT+IYT+++ + I Q HP Sbjct: 239 EISPHTFRHSFASHLVEGGADLRAVQDMLGHESITTTEIYTHIDRDYLHAIITQFHPR 296 >gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] Length = 302 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL++G DLR +Q +LGH+ +STTQIYT+V +R+ ++ HP Sbjct: 244 KLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKTLHAVHHPR 301 >gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] Length = 312 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL + GDLR++Q +LGH+ ++ TQ+YT+++ + + IYDQ HP + Sbjct: 247 VHPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLARIYDQAHPRAKK 306 Query: 63 KD 64 +D Sbjct: 307 RD 308 >gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 304 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 51/63 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP T+ Sbjct: 238 SPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATRP 297 Query: 64 DKK 66 ++ Sbjct: 298 GRR 300 >gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 304 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 36/58 (62%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ R++ Y Q HP Sbjct: 246 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTQVDAARLLAAYAQAHPR 303 >gi|184200720|ref|YP_001854927.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] gi|183580950|dbj|BAG29421.1| tyrosine recombinase XerC [Kocuria rhizophila DC2201] Length = 378 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRHS ATHLL G DLR++Q +LGH+ ++TTQIYT+V+ +R+ Y Q HP Sbjct: 323 PHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAHPRA 378 >gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] Length = 303 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ R+ + + HP Sbjct: 241 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHLDRSRLRQEILEHHPRNM 300 Query: 62 QK 63 + Sbjct: 301 NR 302 >gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 304 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DL +IQ+++GH ++TT+IYT++++ + E + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHPRNK 302 Query: 62 QK 63 ++ Sbjct: 303 KR 304 >gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] Length = 306 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|218662495|ref|ZP_03518425.1| site-specific tyrosine recombinase XerD [Rhizobium etli IE4771] Length = 140 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 76 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 135 Query: 63 KDK 65 K Sbjct: 136 AKK 138 >gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] Length = 292 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + ++YD HP Sbjct: 230 IRVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDSAHPRA 289 Query: 61 TQK 63 +K Sbjct: 290 RKK 292 >gi|159036854|ref|YP_001536107.1| integrase family protein [Salinispora arenicola CNS-205] gi|157915689|gb|ABV97116.1| integrase family protein [Salinispora arenicola CNS-205] Length = 363 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRH+ ATHLL G DLR++Q +LGH+ L++TQIYT+V+ +R+ Y Q HP Sbjct: 305 PTTPHGLRHATATHLLEGGADLRTVQELLGHTSLASTQIYTHVSVERLRAAYRQAHPRA 363 >gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] Length = 308 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 40/65 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL+ G DLRS+Q +LGH+ ++TT+IYT++ + HP Sbjct: 243 KVSPHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHPLAA 302 Query: 62 QKDKK 66 + K Sbjct: 303 KPGTK 307 >gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319] gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319] Length = 314 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 46/66 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTTTLRQEILEHHPRNI 301 Query: 62 QKDKKN 67 + D+++ Sbjct: 302 KYDEEH 307 >gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] Length = 299 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 240 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 297 >gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001] gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001] gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG] Length = 298 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296 >gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03] gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07] gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22] gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26] gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32] gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12] Length = 306 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATHLL++G DLR++Q +LGH+ ++TTQIYT+V ++R+ + HP Sbjct: 243 SPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300 >gi|332886450|gb|EGK06694.1| hypothetical protein HMPREF9456_00568 [Dysgonomonas mossii DSM 22836] Length = 295 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+NG D+ +++ +LGH+ L+ T+IYT+ + + + IY++ HP Sbjct: 237 KVSPHVLRHSFATGMLNNGADINAVKELLGHASLAATEIYTHTSFEELKRIYNKAHPRA 295 >gi|227875947|ref|ZP_03994070.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35243] gi|227843479|gb|EEJ53665.1| possible integrase/recombinase XerD [Mobiluncus mulieris ATCC 35243] Length = 361 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++ + ++Y Q HP Sbjct: 306 PHGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHPHA 361 >gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355] Length = 220 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 162 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPRA 220 >gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N] gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N] Length = 325 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 46/65 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ ++TTQ+YT ++ + + ++YDQ HP + Sbjct: 258 VHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANR 317 Query: 63 KDKKN 67 K + N Sbjct: 318 KPEDN 322 >gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3] Length = 312 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V R+ + ++ HP I Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEHHPLID 307 Query: 62 Q 62 Q Sbjct: 308 Q 308 >gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 AH LRHS ATHL+ G D+RS+Q +LGHS L+TTQIYT+V+ KR+ E Y + HP Sbjct: 303 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 358 >gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] Length = 314 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 39/58 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ R+ + HP Sbjct: 242 TISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNRLRQEIIGHHPR 299 >gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 357 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 300 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 357 >gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans LB400] gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400] Length = 307 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTALDFQHLAHVYDQAHPRAK 304 Query: 62 QKD 64 ++D Sbjct: 305 KRD 307 >gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1] gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1] Length = 282 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHSFATHLL G D+R+IQ +LGHS LSTTQIYT V + + + ++ Sbjct: 218 VEVTPHKLRHSFATHLLEEGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKA 273 >gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 244 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 302 >gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14018] gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] Length = 357 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L+ G DLR +Q +LGHS L+TTQ YT+V+ + + + Y Q P Sbjct: 300 VAPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIQALKQRYSQAFPRA 357 >gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] Length = 300 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLATLHSEHHPR 299 >gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] Length = 302 Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 244 PISPHVLRHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLQSLHAKHHPR 301 >gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] Length = 320 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 50/64 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+LRH+FATHLL+ G DLRS+Q++LGH+ +STTQIYT+V ++R+ ++ ++ HP T Sbjct: 253 VSPHSLRHAFATHLLARGADLRSLQTLLGHADISTTQIYTHVLAERLQKLVEEHHPLATP 312 Query: 63 KDKK 66 ++ Sbjct: 313 PGRR 316 >gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] Length = 310 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S + + + HP + Sbjct: 243 NVYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSSHLKKQIAK-HPKHS 301 Query: 62 QKDKKN 67 + ++N Sbjct: 302 KHARQN 307 >gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 300 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ ++ + HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATARLASLHSEHHPR 299 >gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H] gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H] Length = 311 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFA+HLL++G DLR++Q +LGH+ ++TTQIYT V S+R+ + HP + Sbjct: 244 VSPHVLRHSFASHLLAHGADLRALQMLLGHADIATTQIYTQVMSERLRQAVAAHHPLARK 303 >gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 309 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FATHLL G DLR+IQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 252 VTPHAFRHAFATHLLGAGADLRTIQELLGHASLSTTQRYTQVDAAGLLAAYQAAHPKA 309 >gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200] Length = 300 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] Length = 335 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHS+A+HLL + GDLR++Q +LGH+ ++TTQ+YT ++ + + + YD HP + Sbjct: 274 VHPHMLRHSYASHLLQSSGDLRAVQELLGHANITTTQVYTKLDFQHLAKAYDAAHPRARK 333 Query: 63 KD 64 K Sbjct: 334 KS 335 >gi|269977906|ref|ZP_06184860.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] gi|269933872|gb|EEZ90452.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] Length = 361 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL+ G DLR +Q ILGH+ L TTQ YT++++ + ++Y Q HP Sbjct: 306 PHGLRHTAATHLLNGGADLRCVQEILGHASLGTTQRYTHLSTTHLRQVYLQAHPHA 361 >gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] Length = 315 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 260 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 315 >gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia J2315] gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315] Length = 306 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP Sbjct: 244 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAK 303 Query: 62 QKD 64 ++D Sbjct: 304 KRD 306 >gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c] gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c] Length = 324 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIARQHLQQLHAQHHPRA 324 >gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999] Length = 304 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L + GDLR++Q +LGH+ L+TTQ+YT+++ + + +YD HP + Sbjct: 245 ISPHKLRHSFATHVLESSGDLRAVQELLGHANLATTQVYTHLDFQHLAGVYDNAHPRAKK 304 >gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] Length = 307 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLARVYDQAHPRAK 304 Query: 62 QKD 64 +++ Sbjct: 305 KRE 307 >gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] Length = 302 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 247 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRVVHDQAHPRA 302 >gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91] gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91] Length = 321 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 48/65 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 HTLRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP + Sbjct: 257 VHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARK 316 Query: 63 KDKKN 67 K K + Sbjct: 317 KPKTD 321 >gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] Length = 299 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 166 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 108 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 166 >gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] Length = 297 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHPR 296 >gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] Length = 292 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT+RHSFATHLL NG +LR IQ +LGH+ +S+T YT+++ + +D+ HP Sbjct: 234 SLSPHTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYTHISRIHLQNAFDRYHPR 291 >gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] Length = 297 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKTRLKSLHQQFHPR 296 >gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 306 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP + Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKK 304 Query: 63 KD 64 +D Sbjct: 305 RD 306 >gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 321 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 44/60 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V ++ EI+ THP+ ++D Sbjct: 245 CHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLKEIHAATHPAKLERD 304 >gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei BCC215] Length = 310 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 46/63 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP Sbjct: 248 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAK 307 Query: 62 QKD 64 ++D Sbjct: 308 KRD 310 >gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] Length = 299 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 244 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 299 >gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum NCC2705] gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C [Bifidobacterium longum NCC2705] gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] Length = 357 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 300 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 357 >gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010] Length = 334 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 277 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 334 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 277 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH] gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH] Length = 275 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H LRHSFAT L+ G DLR +Q +LGHS L+TTQIYT++ + + + + HP Sbjct: 212 LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSLNTTQIYTHIQKENLKDTVIKYHP 269 >gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] Length = 299 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FATHL+++G DLR +Q +LGH+ + TTQIYT+V + + + +Q+HP Sbjct: 238 TVSPHVLRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVAKEHLHTLLNQSHPRSK 297 Query: 62 QK 63 + Sbjct: 298 SR 299 >gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 357 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 300 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 357 >gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein [Paenibacillus polymyxa SC2] gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Paenibacillus polymyxa SC2] Length = 314 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HTLRHSFA H+L G DLRS+Q +LGH+ L+TTQ+Y + M E+Y+ HP Sbjct: 245 ITPHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARRNMKEVYEMHHP 300 >gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] Length = 300 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 34/56 (60%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V R+ E++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPR 299 >gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301] gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301] Length = 294 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 45/64 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + IYD HP Sbjct: 231 ISMHPHLLRHSFASHVLQSSQDLRAVQEMLGHANISTTQIYTHLDFQHLASIYDSAHPRA 290 Query: 61 TQKD 64 +K Sbjct: 291 KKKS 294 >gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] Length = 220 Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H +RH+FAT LL G DLRS+Q +LGH+ LSTTQIYT++ R+ Q HP Sbjct: 162 IAPHAMRHTFATDLLEGGADLRSVQELLGHASLSTTQIYTHLTPDRLKRAVAQAHPR 218 >gi|332308051|ref|YP_004435902.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V + R+ E+ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATARLQELVANHHPR 300 >gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] Length = 334 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ E Y Q P Sbjct: 277 ISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >gi|239908039|ref|YP_002954780.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] gi|239797905|dbj|BAH76894.1| tyrosine recombinase XerC [Desulfovibrio magneticus RS-1] Length = 308 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 45/63 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATHLL +G DLRS+Q +LGH+RL+TT YTN++ R++ IYD+ HP Sbjct: 240 AHPHMLRHSFATHLLESGADLRSVQELLGHARLTTTTRYTNLDLARIVGIYDKAHPRSDH 299 Query: 63 KDK 65 K + Sbjct: 300 KGE 302 >gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY] gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY] Length = 303 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 245 PLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 302 >gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 297 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVAKARLKSLHQQFHPR 296 >gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] Length = 317 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + ++ Sbjct: 308 KYRQE 312 >gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 313 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H +RH+FAT LLS G DLR +Q +LGH LSTTQIYT+++ +R+ + Q HP Sbjct: 255 TPHAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTHLSIERLKDAAKQAHPR 310 >gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus] Length = 298 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+ G DLR++QS+LGH LSTT YT+V+++++ ++Y HP Sbjct: 234 EIHPHKLRHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAK 293 Query: 62 QKDK 65 ++++ Sbjct: 294 KENE 297 >gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa Temecula1] gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23] gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1] gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23] gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 324 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323 >gi|304394248|ref|ZP_07376171.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] gi|303293688|gb|EFL88065.1| tyrosine recombinase XerC [Ahrensia sp. R2A130] Length = 342 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL NGGDLR+IQ +LGH+ LSTTQ YT V+++ +M + HP Sbjct: 284 TATPHALRHSFATHLLGNGGDLRTIQELLGHASLSTTQKYTAVDTESLMASWAAAHPRA 342 >gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 317 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + ++ Sbjct: 308 KYRQE 312 >gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] Length = 313 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 33/61 (54%), Positives = 46/61 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRH+FATHLL++GGDLR+IQ +LGH+ LSTTQIY ++ R++ I+ THP Sbjct: 252 TATPHALRHAFATHLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAATHPRAR 311 Query: 62 Q 62 + Sbjct: 312 K 312 >gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 324 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323 >gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5] Length = 294 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA H+L NG D++S+Q +LGHS +STTQ+Y N +M ++Y + HP Sbjct: 237 ITPHTLRHSFAAHMLQNGADVKSVQEMLGHSDISTTQVYLNFGVAKMRDVYMKAHPR 293 >gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 297 Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 1/66 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHL+ +G DLR++Q +LGHS ++TT+IYT+V+S + + + HP + Sbjct: 230 NIYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPKHS 288 Query: 62 QKDKKN 67 + ++N Sbjct: 289 KHARQN 294 >gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 325 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V +R+ I+D+THP Sbjct: 268 VGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 324 >gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666] gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666] Length = 358 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 43/60 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT ++ + + ++YD HP T Sbjct: 272 PVHPHMLRHSFASHVLQSSGDLRAVQELLGHANITTTQVYTRLDFQHLAKVYDAAHPRAT 331 >gi|332828179|gb|EGK00891.1| hypothetical protein HMPREF9455_02680 [Dysgonomonas gadei ATCC BAA-286] Length = 294 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T+ H LRHSFAT +L+NG D+ +++ +LGHS L+ T+IYT+ + + + +IY++ HP Sbjct: 236 KTSPHVLRHSFATGMLNNGADINAVKELLGHSSLAATEIYTHTSFEELKKIYNKAHPRA 294 >gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 43/55 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLLS+G DLR++Q +LGH+ ++TTQIYT+V ++R+ E HP Sbjct: 243 SPHVLRHSFATHLLSHGADLRALQVLLGHADITTTQIYTHVLTERLQEALRHHHP 297 >gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 318 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL+NG DLRSIQ++LGH+ LS+TQIYT V + R+ I+ HP Sbjct: 260 TATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHPRA 318 >gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] Length = 339 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 282 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 339 >gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2] Length = 314 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHSFATH+L+ G DLR +Q ILGH+ ++TTQ+YT+++ ++ EIY HP Sbjct: 256 HPHTLRHSFATHMLAGGADLRVLQEILGHASITTTQLYTHLDRAQITEIYLGAHPRAR 313 >gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b] gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b] Length = 297 Score = 106 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ ++ Q HP Sbjct: 239 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRLLHQQHHPRA 297 >gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 314 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 41/66 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG D+RS+Q +LGHS LSTTQIYT+V +M Y + P Sbjct: 249 KIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTHVTKSHLMNDYKKYFPRNN 308 Query: 62 QKDKKN 67 K N Sbjct: 309 DSLKSN 314 >gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 308 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPR 307 >gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Rv] gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis AF2122/97] gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis F11] gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T17] gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CPHL_A] gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis K85] gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 210] gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN 4207] gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN R506] gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN V2475] gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis H37Rv] gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97] gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11] gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A] gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148] gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207] Length = 298 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 >gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12] gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12] Length = 324 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL++G DLR++Q +LGH +STTQIYT + + + +++ Q HP Sbjct: 266 KVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323 >gi|261855921|ref|YP_003263204.1| integrase family protein [Halothiobacillus neapolitanus c2] gi|261836390|gb|ACX96157.1| integrase family protein [Halothiobacillus neapolitanus c2] Length = 329 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATH+L + GDLR++Q +LGH LSTTQIYT+++ +R+ ++Y+ HP Sbjct: 248 TLHPHQLRHAFATHVLESSGDLRAVQEMLGHESLSTTQIYTHLDFQRLAQVYESAHPRAH 307 Query: 62 QKDK 65 K + Sbjct: 308 IKKQ 311 >gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 310 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 M + HTLRH+FATHLL+N ++R +Q +LGH ++TTQ YT+V + R+ E+Y++ HP Sbjct: 248 MDFSPHTLRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNRFHP 305 >gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 94_M4241A] gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] Length = 298 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ HP Sbjct: 243 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERAHPRA 298 >gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] Length = 334 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ + Y + P Sbjct: 277 ISPHALRHSAATHLLDGGADLREVQEMLGHSSLQTTQRYTHVSMEQLTKKYKRAFPRA 334 >gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 308 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ + HP Sbjct: 252 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPR 307 >gi|332638608|ref|ZP_08417471.1| integrase/recombinase [Weissella cibaria KACC 11862] Length = 305 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH RH++AT +L+NG DLR++Q +LGHS LSTTQIYT+V + + + Y P T+ Sbjct: 246 ISAHMFRHTYATDMLNNGADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRDFFPRATE 305 >gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1] gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1] Length = 299 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQELLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|332994410|gb|AEF04465.1| tyrosine recombinase [Alteromonas sp. SN2] Length = 305 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ + HP Sbjct: 249 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPR 304 >gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009] gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas palustris CGA009] Length = 338 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 278 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 333 >gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] Length = 275 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 40/63 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHS+AT L+ G DLR +Q +LGH+ L TTQIYT++ + + + + HP Sbjct: 212 LGVSPHVLRHSYATSLIRGGADLRVVQELLGHASLLTTQIYTHIQKQDLKDTVEVCHPMA 271 Query: 61 TQK 63 +K Sbjct: 272 KEK 274 >gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats. Identities = 36/55 (65%), Positives = 46/55 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S T H LRHSFATHLL+ GGDLRSIQ +LGH+ LSTTQ+YT V++ R++E+YD+ Sbjct: 268 SATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYTEVDAARLLEVYDKA 322 >gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] Length = 334 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q LGH+ L+TTQ+YT+V+ R+ + Y Q HP Sbjct: 279 PHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHVSVDRLRQSYRQAHPRA 334 >gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 292 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 36/60 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G LR +Q ++GH L TTQ Y +V ++RM Y HP Sbjct: 224 FGVSPHTLRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHPRA 283 >gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] Length = 299 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 240 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 297 >gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] Length = 298 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296 >gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 42/63 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + HT+RHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R+ + HP Sbjct: 244 SISPHTIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAAHQDHHPRTR 303 Query: 62 QKD 64 K Sbjct: 304 IKP 306 >gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 299 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHS A H++ G DLR +Q ILGH+ L+TT++YT V+ + +Y + HP Sbjct: 237 VSPHVLRHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGHVDAVYQRAHPRAR 295 >gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440] gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440] Length = 299 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] Length = 318 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 253 TISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPR 310 >gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] Length = 296 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA H+L NG D++S+Q +LGHS +S+TQIY +N RM ++Y + HP Sbjct: 239 ITPHTLRHSFAVHMLQNGADVKSVQEMLGHSDISSTQIYLGMNVARMRDVYMKAHPR 295 >gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 295 Score = 106 bits (267), Expect = 9e-22, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 196 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH ++TT+IYT+++ + + HP Sbjct: 126 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTHIDRNMLRSEIIEHHPRNI 185 Query: 62 QKDKK 66 + K+ Sbjct: 186 KYRKE 190 >gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis AD011] gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011] Length = 344 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q P Sbjct: 287 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFPRA 344 >gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA2] gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL044PA1] gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA3] Length = 315 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] Length = 323 Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats. Identities = 33/64 (51%), Positives = 45/64 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL+NG DLRSIQ++LGH+ ++TT+IYT+V R+ E+ HP Sbjct: 249 KVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLEARLSELVLTHHPLAQ 308 Query: 62 QKDK 65 + Sbjct: 309 DDTR 312 >gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] Length = 324 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+++++ + HP Sbjct: 265 ATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYTLADESRLLDVWTRAHPRA 322 >gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] Length = 307 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDQAHPRAK 304 Query: 62 QKD 64 ++D Sbjct: 305 KRD 307 >gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ++LGH ++TT+IYT++ + + HP Sbjct: 238 NVSPHTFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTHLEIHFLRSEIIEHHPRNR 297 >gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 304 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL+NG D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 244 KIHPHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFPRAK 303 Query: 62 Q 62 + Sbjct: 304 K 304 >gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 295 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 238 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >gi|72161078|ref|YP_288735.1| site-specific tyrosine recombinase XerC [Thermobifida fusca YX] gi|71914810|gb|AAZ54712.1| tyrosine recombinase XerC subunit [Thermobifida fusca YX] Length = 303 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL+ G DLRS+Q ILGH+ L++TQIYT+V+ R+ +Y Q HP Sbjct: 248 PHGLRHSAATHLLNGGADLRSVQEILGHASLASTQIYTHVSIGRLASVYQQAHPRA 303 >gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1] Length = 299 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] Length = 303 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q +LGH+ L+TTQ YT+V++ R+ IY + HP Sbjct: 246 VAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTHVDTARLSAIYQRAHPRA 303 >gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis V9] Length = 311 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ Y +V+ +++ + Y Q P Sbjct: 254 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQAFPRA 311 >gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08] Length = 310 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 255 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 310 >gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] Length = 306 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ +S TQ+YT+++ + + +IYD HP + Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYTSLDFQHLAKIYDSAHPRAKK 304 Query: 63 KD 64 +D Sbjct: 305 RD 306 >gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 338 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 37/59 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 M T H RHSFAT LL D+R IQ +LGHS ++TTQIYT+V S + EI HP Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHPR 332 >gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70] gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70] Length = 300 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FATHLL+ G D+R++Q +LGH+ LS+TQ+YT+V R+ IY THP Sbjct: 242 NISPHVLRHTFATHLLNEGADMRTVQELLGHAHLSSTQVYTHVTKDRLRHIYLHTHPRA 300 >gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145] gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145] Length = 301 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V +R+ +++ HP Sbjct: 245 SPHTLRHAFATHLLNHGADLRVLQMLLGHSDLSTTQIYTQVAKERLQQMHATFHPR 300 >gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1] gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1] Length = 299 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+H+L + DLR++Q +LGH+ +STTQIYT+++ + + +YD HP + Sbjct: 235 HPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQHLAAVYDSAHPRAKRS 294 Query: 64 D 64 Sbjct: 295 K 295 >gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] Length = 296 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 46/58 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H +RH+FATHLL++G DLR++Q +LGH+ +STT+IYT+V + R+ +++DQ HP Sbjct: 238 PLSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPR 295 >gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] Length = 292 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATHLL G DLR++Q +LGHS + T+IYT+V S RM+ ++ + HP Sbjct: 234 PVSPHTLRHSFATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVALHRKFHPR 291 >gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 380 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H LRH+FATHLL G LR++Q +LGH+ L+ TQ+YT+V+ R+ +Y Q H Sbjct: 268 LQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTHVSRARLWAVYQQAH 324 >gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] Length = 338 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 37/59 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 M T H RHSFAT LL D+R IQ +LGHS ++TTQIYT+V S + EI HP Sbjct: 274 MHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTKHPR 332 >gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] Length = 293 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+N L S++ +LGH LSTT+IYT+ +++ +IYD+ HP Sbjct: 237 SPHVLRHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTHTTFEQLRKIYDKAHPRA 293 >gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12] gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12] Length = 319 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH +STT+IYT+++ + + HP Sbjct: 248 NISPHTFRHSFATHLLEGGANLRAIQCMLGHESISTTEIYTHIDRNMLRSEIIEHHPRNI 307 Query: 62 QKDKK 66 + ++ Sbjct: 308 KYRQE 312 >gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 276 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS ATHLL++G D+R +Q +LGHS + TQIYT++N K + + YD THP Sbjct: 215 VSPHTLRHSKATHLLNSGMDIRLLQRLLGHSSIKATQIYTHLNLKELAQTYDSTHPLAK 273 >gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 304 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 43/57 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSF HL+ NG DLR++Q ++GHS +STTQIY ++N +R+ EIY + HP Sbjct: 247 ITPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPR 303 >gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36] gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36] Length = 296 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 44/57 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL+ G DLR +Q +LGHS LSTTQIYT+V + R+ +++ + HP Sbjct: 240 SPHTLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATARLEQLHSEHHPRA 296 >gi|330466299|ref|YP_004404042.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328809270|gb|AEB43442.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 376 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q +LGHS L++TQ+YT+V+ R+ Y Q HP Sbjct: 321 PHALRHSAATHLLEGGADLRAVQELLGHSSLASTQVYTHVSVDRLRAAYRQAHPRA 376 >gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 310 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL DLR++Q +LGH++LSTTQ Y +VN +ME+YD+ HP Sbjct: 252 PLSPHGLRHTFATHLLEGKADLRAVQELLGHAQLSTTQKYLHVNLDYLMEVYDKAHPR 309 >gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] Length = 327 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V +R+ + HP + Sbjct: 267 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHPLSNR 326 >gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 317 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHS ATH++ +G DLR++Q++LGH+ ++TTQ+YT++ R+ +++ HP Sbjct: 248 ASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLKQVHRLHHPRAK 306 >gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] Length = 304 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DL +IQ+++GH ++TT+IYT++++ + E + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTHIDTSSLREEITKHHPRNK 302 Query: 62 Q 62 + Sbjct: 303 K 303 >gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] Length = 290 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H++RHSFATH+L G L +Q +LGH L TTQ Y V + + Y HP Sbjct: 228 NVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLKVTPGHLRDSYMAAHPRSG 287 Query: 62 QKD 64 +++ Sbjct: 288 EEE 290 >gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 279 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEERLKSLVRDLHP 334 >gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] Length = 324 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L GDLR++Q +LGH+ ++ TQ+YT+++ +R+ ++YD HP Sbjct: 260 NVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYTSLDFQRLAQVYDAAHPRAK 319 Query: 62 Q 62 + Sbjct: 320 K 320 >gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 227 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 30/50 (60%), Positives = 38/50 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HT RHSFATHLL G DLRS+Q++LGHS +STTQIYT+V+ + + Sbjct: 170 KITPHTFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHVSRDYLRK 219 >gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 298 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296 >gi|89890184|ref|ZP_01201695.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] gi|89518457|gb|EAS21113.1| site-specific integrase/recombinase XerD protein [Flavobacteria bacterium BBFL7] Length = 295 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 43/63 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T+ H LRHSFATHLL G DL +++ +LGH+ L++TQ+YT+ + + + E++ HP Sbjct: 233 VKTSPHILRHSFATHLLDEGADLNAVKELLGHASLASTQVYTHSSMEMLKEMHRNAHPRS 292 Query: 61 TQK 63 + Sbjct: 293 KKD 295 >gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus ATCC 19977] gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus] Length = 304 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 249 PHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 304 >gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T+ H LRH+FATHLL+NG DL +++ +LGH+ L++TQ+YT+ + + +Y HP Sbjct: 236 KTSPHMLRHTFATHLLNNGADLNAVKELLGHASLASTQVYTHTSIAELGRVYKNAHPRNL 295 Query: 62 QK 63 +K Sbjct: 296 KK 297 >gi|254417725|ref|ZP_05031449.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196183902|gb|EDX78878.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 309 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TT H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V+++R++ Y HP Sbjct: 252 TTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDAERLLNAYAAAHPRA 309 >gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] Length = 353 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 296 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 353 >gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 310 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRH+F TH+L +G DLR+IQ +LGH RLSTTQ YT + ++ +Y+++HP Sbjct: 252 VHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEESHPRA 309 >gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334] gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang] gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334] gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang] gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W] gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II] Length = 298 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296 >gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] Length = 301 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++ ++ + + HP ++ Sbjct: 239 ISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQNKLHKEIEAKHPLSSK 298 Query: 63 K 63 K Sbjct: 299 K 299 >gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 298 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATH+L +G DLR++Q +LGH+ LSTTQIYT+V + Y + +P Sbjct: 239 NIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPK 296 >gi|227497530|ref|ZP_03927758.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434] gi|226832984|gb|EEH65367.1| integrase/recombinase XerD [Actinomyces urogenitalis DSM 15434] Length = 167 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 112 PHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRAVYEQAFPRA 167 >gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] Length = 309 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGH+ +STT IYT+V +R+ ++ Q HP Sbjct: 250 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQHHPR 308 >gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] Length = 315 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 46/64 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + DLR++Q +LGHS++STTQ+YT ++ + + E YD+ HP Sbjct: 251 NIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTRLDFQHLSEAYDKAHPRAK 310 Query: 62 QKDK 65 +K + Sbjct: 311 KKPR 314 >gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFATHLL+NG DLR+IQ +LGH LSTT+ YT V + HP Sbjct: 235 NVSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPRFR 294 Query: 62 Q 62 + Sbjct: 295 K 295 >gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] Length = 299 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGH +STT IYT+V +R+ ++++ HP Sbjct: 240 VPLSPHTLRHAFATHLLNHGADLRVVQLLLGHVDISTTTIYTHVARERLKALHERHHPR 298 >gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] Length = 309 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+LRHSFATHLL G DLR++Q +LGH+ +S T+IYT+V + R++ ++ HP Sbjct: 246 ISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAVHRAHHPRSRA 305 Query: 63 KDK 65 K Sbjct: 306 PGK 308 >gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2] gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 347 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V R+ + HP Sbjct: 288 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHPLA 345 >gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 303 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 43/58 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+ RH++ATHLL++G DLR+IQ +LGH+RLSTTQ YT V+ +M +YD+ HP Sbjct: 246 IHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHPKA 303 >gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23] gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23] Length = 303 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR IQ++LGH + TT+IYT++++ + + + HP Sbjct: 239 TISPHTLRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTHIDTSTLRQEILEHHPRNK 298 Query: 62 QKDKK 66 + + K Sbjct: 299 KTNLK 303 >gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 315 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RH+FA+ LL G DLRS+Q +LGHS LSTTQIYT+V+ +M +++ Q HP Sbjct: 259 TPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTHVSIAQMRKVHKQAHPRA 315 >gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] Length = 312 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RHSFATHLL G +LR+IQ +LGH + TT+IYT+++ R+ + HP Sbjct: 242 KISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDKNRLRQEIIGHHPRNI 301 Query: 62 Q 62 + Sbjct: 302 K 302 >gi|154245579|ref|YP_001416537.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154159664|gb|ABS66880.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 354 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 294 KLSPHVLRHAFASHLLAHGADLRVVQTLLGHADVSTTQIYTHVLDERLKSMVRDLHPLSD 353 Query: 62 Q 62 + Sbjct: 354 E 354 >gi|296129328|ref|YP_003636578.1| integrase family protein [Cellulomonas flavigena DSM 20109] gi|296021143|gb|ADG74379.1| integrase family protein [Cellulomonas flavigena DSM 20109] Length = 308 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH+ LSTTQ YT+V+++R+ ++ HP Sbjct: 251 VAPHALRHTAATHLLEGGSDLRTVQEILGHASLSTTQRYTHVSAERLRSAFELAHPRA 308 >gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152] gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152] Length = 315 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ + + ++Y+Q HP + + Sbjct: 256 PHMLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHPKSKKNE 315 >gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] Length = 292 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+HLLSN DLR IQ +LGH+ ++TT+IYT+V R+ I+ + P Sbjct: 234 NLHPHVLRHSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 352 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 39/59 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RHS AT +L G DLR +Q +LGH+ ++TTQIYT+V ++R+ Y Q HP + Sbjct: 294 SPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYTHVGAERLKAAYRQAHPRSGE 352 >gi|167470505|ref|ZP_02335209.1| tyrosine recombinase XerD [Yersinia pestis FV-1] Length = 145 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 45/57 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 89 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 145 >gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes KPA171202] gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202] gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA1] gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA1] gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA2] gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA1] gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA2] gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL086PA1] gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA4] gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA1] gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA3] gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL067PA1] gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA1] gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA1] gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA1] gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA1] gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA2] gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA2] gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA1] gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA1] gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA2] gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL092PA1] gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA3] gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA2] gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA1] gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA2] Length = 315 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5] gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB5] Length = 351 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGHS +STTQIYT+V R+ + HP Sbjct: 292 VSPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLKSLVRDLHPLA 349 >gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12] gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHPRA 293 >gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] Length = 304 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 39/57 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFA+ ++ G D+R +Q +LGHS ++TTQ YT++ + ++ ++Y + HP Sbjct: 246 KLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTHITAAQLQDLYHKAHP 302 >gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 296 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ + + +++ HP + Sbjct: 238 SPHILRHTFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHLAAHPRNKK 296 >gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum STM815] gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815] Length = 307 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + IYDQ HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYTGLDFQHLARIYDQAHPRAK 304 Query: 62 QKD 64 ++D Sbjct: 305 KRD 307 >gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 319 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++ ++E Y +HP Sbjct: 260 PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319 >gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 306 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RHSFAT+L+ G D+ +Q ILGHS + TTQIY +V +K+ EI ++HP Sbjct: 239 NITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQAEILRESHPRNR 298 >gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa] Length = 302 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + GDLR++Q +LGH+ ++TTQIYT+++ + + +YD P Q Sbjct: 235 HPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQIYTHLDFQHLASVYDAPIPRAKQG 294 Query: 64 DKK 66 + Sbjct: 295 QRD 297 >gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 303 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATHLL G DLR++Q ILGH+ L TTQ YT+V+S+R+ + Q HP Sbjct: 246 ISPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAAFTQAHPRA 303 >gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RH+FATHLL NG DLR IQ +LGHS + TT+IYT ++ + HP Sbjct: 233 KVSPHVFRHTFATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDDDSLRNSLSIHHPRFK 292 Query: 62 Q 62 + Sbjct: 293 R 293 >gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] Length = 293 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNNAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293 >gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 41/62 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL NG DLR +QS+LGH LSTTQIYT+V+ + + +THP Sbjct: 236 FQLHPHVLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLS 295 Query: 61 TQ 62 + Sbjct: 296 HK 297 >gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] Length = 308 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 41/61 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 TAH RH+FAT LL+N DLR++Q +LGHS LSTTQIYT+V + + + Y P + Sbjct: 248 EVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRAS 307 Query: 62 Q 62 + Sbjct: 308 E 308 >gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu] Length = 306 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP + Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKK 304 Query: 63 KD 64 +D Sbjct: 305 RD 306 >gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49] gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49] Length = 295 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 43/59 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+ G DL S++ +LGH+ L++TQ+YT+ + + E+Y +THP + Sbjct: 237 SPHILRHSFATHLLNEGADLNSVKELLGHASLASTQVYTHNSIATLKEVYRKTHPRSKK 295 >gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A] gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum DJO10A] gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A] gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 298 ISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 301 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 47/64 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL G DLR++Q++LGH+ ++TTQIYT+VNS ++E+ + HP + Sbjct: 234 ISPHVLRHAFATHLLEGGADLRALQTMLGHADIATTQIYTHVNSAHLVELVNARHPLMDA 293 Query: 63 KDKK 66 ++ Sbjct: 294 ARRR 297 >gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 319 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++ ++E Y +HP Sbjct: 260 PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319 >gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] Length = 304 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL G DLR++Q +LGHS + TQ+YT+++ + E++ HP Sbjct: 246 KISPHTLRHTFATHLLEGGADLRAVQEMLGHSSILATQLYTHIDRSFIKEVHKTFHPR 303 >gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 301 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ+YT+V +R+ I+D+THP Sbjct: 244 VGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 300 >gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] Length = 322 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRHS ATHLL G DLR +Q +LGHS L+TTQ YT+V+ +++ Y Q P Sbjct: 265 ISPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTHVSMEQLTRKYQQAFPRA 322 >gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 306 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+LS G DLRS+Q +LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 251 PHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFPRA 306 >gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 312 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHS+A+HLL + GDLR++Q +LGH+++STTQ+YT ++ + + IYD HP + Sbjct: 251 VHPHMLRHSYASHLLQSSGDLRAVQELLGHAQISTTQVYTRLDYQHLARIYDAAHPRARR 310 Query: 63 KD 64 K Sbjct: 311 KP 312 >gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] Length = 312 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG D+ IQ +LGH+ LSTTQIYT V ++++ + + HP Sbjct: 251 ISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306 >gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] Length = 309 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 41/58 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT LL+NG D+R+IQ +LGH+ L TQ+YT+ + ++ +IY + HP Sbjct: 242 SPHVLRHTFATELLNNGADMRAIQELLGHASLQATQVYTHNSIAKLQKIYSKAHPREK 299 >gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 342 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H LRH+FATHLLS GG++R+IQ +LGH+ LSTTQIYT V++ +M + HP Sbjct: 267 SATPHALRHAFATHLLSRGGEIRAIQELLGHASLSTTQIYTEVDATALMAAWRSAHPR 324 >gi|330874852|gb|EGH09001.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 149 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 45/58 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT++ R+ E++ + HP Sbjct: 91 SLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLARARLQELHAKHHPR 148 >gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] Length = 340 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 281 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 338 >gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] Length = 293 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 45/62 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + DLR++Q +LGH+ +STTQ+YT+++ + + ++YD HP Sbjct: 232 NLHPHMLRHSFASHVLQSSQDLRAVQEMLGHANISTTQVYTHLDFQHLAKVYDNAHPRAK 291 Query: 62 QK 63 +K Sbjct: 292 KK 293 >gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE] gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE] Length = 272 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATH+L NGG++ +IQ +LGH+ L+TTQIYT+ + + ++Y THP Sbjct: 213 KVTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSLNTTQIYTHYSVDELKDMYAHTHPMNK 272 >gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRHSFATHLL+NG D+ IQ +LGH+ LSTTQIYT V ++++ + + HP Sbjct: 251 ISPHKLRHSFATHLLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEKLKNVLFKYHP 306 >gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] Length = 315 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ +LGH +STT+IYT++++ + + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYTHIDTTTLRREILEHHPRNI 302 Query: 62 QKDKK 66 +++ Sbjct: 303 HYEEE 307 >gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 44/60 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRH+FATHLL+ G DL SIQ++LGH+ ++TT+IYT+V R+ E+ HP T+ Sbjct: 248 VTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLDARLRELVLTHHPLATK 307 >gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] Length = 299 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+NG DL +++ +LGHS L+TT IYT+V + +++ Y HP Sbjct: 243 SPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHPRA 299 >gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118] gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118] Length = 306 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 43/58 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR++Q +LGH +STT IYT+V +R+ ++ Q HP Sbjct: 248 PLSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVARERLKVLHAQHHPR 305 >gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein [Leuconostoc fallax KCTC 3537] Length = 308 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 40/63 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHLL++G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 242 KIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTHVTRESLQKNYQNFFPRAK 301 Query: 62 QKD 64 D Sbjct: 302 LND 304 >gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] Length = 301 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH+FA+H+L + GDLRS+Q +LGH L+TTQIYT+++ + + YD+ HP Sbjct: 233 VNVHPHMLRHTFASHILQSSGDLRSVQELLGHKNLATTQIYTHLDYQHLARTYDEKHPRA 292 Query: 61 TQK 63 +K Sbjct: 293 KKK 295 >gi|88855245|ref|ZP_01129910.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815773|gb|EAR25630.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 302 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRH+ ATHLL G DLR++Q +LGH+ L TTQ+YT+V+++R+ E Y HP Sbjct: 247 PHTLRHTAATHLLDGGADLRAVQEMLGHASLGTTQLYTHVSTERLRESYRTAHPRA 302 >gi|297559217|ref|YP_003678191.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843665|gb|ADH65685.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 289 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL+ G DLRS+Q LGH+ +TQIYT+V+ +R+ + Y + HP Sbjct: 234 PHGLRHSAATHLLNGGADLRSVQEFLGHASPRSTQIYTHVSVERLRDTYRRAHPRA 289 >gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] Length = 316 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 36/58 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 259 VGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLAARYRQAFPRA 316 >gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 313 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 39/58 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S T H +RH+FAT L+ G DL+S+Q +LGH LSTTQIYT+++ + + Q HP Sbjct: 255 SYTPHDMRHTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAVHQAHPR 312 >gi|88802458|ref|ZP_01117985.1| putative site-specific recombinase [Polaribacter irgensii 23-P] gi|88781316|gb|EAR12494.1| putative site-specific recombinase [Polaribacter irgensii 23-P] Length = 301 Score = 105 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 41/59 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFATHLL+ G DL S++ +LGHS L++TQ+YT+ + + IY Q HP +K Sbjct: 242 PHILRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKNIYKQAHPRSNKK 300 >gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] Length = 310 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 44/66 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + + + HP Sbjct: 242 TISPHTLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTHIDTSTLRQEILEHHPRNI 301 Query: 62 QKDKKN 67 + + + Sbjct: 302 KYSEDH 307 >gi|298292762|ref|YP_003694701.1| integrase family protein [Starkeya novella DSM 506] gi|296929273|gb|ADH90082.1| integrase family protein [Starkeya novella DSM 506] Length = 334 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL++G DLR +Q++LGHS +STTQIYT+V +R+ + HP Sbjct: 271 KLSPHVLRHAFASHLLAHGADLRIVQTLLGHSDISTTQIYTHVLDERLKSLVRDLHP 327 >gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1] Length = 306 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL++G DLR +Q +LGH+ ++TT+IYT+V + + + +Q HP Sbjct: 243 SPHVLRHAFATHLLAHGADLRVVQELLGHADIATTEIYTHVLEEPKVRLVNQHHPLAA 300 >gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 46/58 (79%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++T HTLRHSFATHLL G +LR++Q +LGH+RLSTTQ YT++ ++++ YD+ HP Sbjct: 247 LTTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHP 304 >gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM 1251] Length = 278 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHS+AT L++ G DLR +Q +LGHS L TTQIYT++ + + E + HP Sbjct: 212 LGVSPHVLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQDLKETLEVCHPMA 271 Query: 61 TQ 62 + Sbjct: 272 KE 273 >gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA1] gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL097PA1] Length = 315 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 307 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302 Query: 62 QKD 64 +K+ Sbjct: 303 RKN 305 >gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 306 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RH+FATHLL G DLRS+Q +LGH +S T++YT+V S R+ I+ HP Sbjct: 239 SISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPR 296 >gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum DSM 1728] gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum] Length = 283 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT++N + E+Y Q P Sbjct: 225 KVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHLNDSALREMYTQHRPR 282 >gi|170747361|ref|YP_001753621.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653883|gb|ACB22938.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 326 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL+ G+LR+IQ +LGH+ LSTTQ+YT V++ R+M Y HP Sbjct: 266 SATPHALRHSFATHLLARQGELRAIQELLGHASLSTTQLYTQVDAARLMSAYAAAHPRA 324 >gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] Length = 302 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 41/62 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS+A+HLL D+R++Q +LGH LSTTQIY ++ + ++YD THP + Sbjct: 241 ISPHMLRHSYASHLLQASRDVRAVQELLGHQNLSTTQIYAKLDFDHLAQVYDDTHPRAKR 300 Query: 63 KD 64 K Sbjct: 301 KK 302 >gi|254827675|ref|ZP_05232362.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] gi|258600054|gb|EEW13379.1| tyrosine recombinase XerC subunit [Listeria monocytogenes FSL N3-165] Length = 291 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 37/58 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFATHLL NG DLR IQ +LGHS +STT+IYT V K+ + HP Sbjct: 233 KIHPHMLRHSFATHLLENGCDLRYIQELLGHSSVSTTEIYTKVQLKQKQNTILKFHPR 290 >gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] Length = 310 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL+ G DLR++Q +LGHS LSTTQ YT+V+++R+ Y HP Sbjct: 253 VAPHDLRHSAATHLLNGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLRSSYQLAHPRA 310 >gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA1] Length = 315 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 307 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTHIDTTTLREEILNHHPRNM 302 Query: 62 QKD 64 +K+ Sbjct: 303 RKN 305 >gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] Length = 311 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DL +IQ++LGH +STT+IYT+++ + + + + HP Sbjct: 243 TISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTHIDRESLRKAIIEHHPRNK 302 Query: 62 QK-DKKN 67 K K+N Sbjct: 303 PKYTKEN 309 >gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 315 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRHSFATH+L+ G ++R++Q +LGH+ + TTQ+YT+V R+ I+ HP Sbjct: 258 VSPHTLRHSFATHMLAGGAEIRALQEMLGHANIRTTQVYTHVEHSRLKSIHRDCHPR 314 >gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] Length = 307 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 46/63 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H+LRHSFATHLL G DLR++Q++LGH+ +S T+IYT+V ++R++ ++ HP Sbjct: 244 LHISPHSLRHSFATHLLDGGADLRTVQTLLGHADISATEIYTHVQAERLLAVHRAHHPRS 303 Query: 61 TQK 63 + Sbjct: 304 RAQ 306 >gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] Length = 319 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 42/60 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHS ATHL++ G D+R++Q +LGH+ ++TTQIYT+++ ++E Y +HP Sbjct: 260 PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319 >gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 306 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q +LGH+ L TTQIYT+V+++R+ + Q HP Sbjct: 251 PHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAAFRQAHPRA 306 >gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL074PA1] gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA2] gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA1] gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA2] gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA1] gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA2] gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA1] gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL007PA1] gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL056PA1] gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA3] gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA2] gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA1] gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL045PA1] gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA2] gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA1] gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA2] gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA3] gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL078PA1] gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA2] gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA3] gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL038PA1] gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA2] gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA3] gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA2] gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA1] gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA2] gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL020PA1] gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL099PA1] gi|332675950|gb|AEE72766.1| tyrosine recombinase XerC [Propionibacterium acnes 266] Length = 315 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 260 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304] gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304] Length = 318 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHS ATHL+ G D+R++Q +LGH+ ++TTQ+YT+++ + ++E Y HP Sbjct: 259 EVHPHTLRHSCATHLIRGGADVRTVQELLGHASVTTTQLYTHISPQTLIETYITAHPRAR 318 >gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] Length = 295 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G +LR +Q +LGHS LSTTQIYT V R+ ++ Q HP Sbjct: 237 PLSPHTLRHAFATHLLNHGANLRVVQMLLGHSDLSTTQIYTQVAQARLEALHAQHHPR 294 >gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] Length = 319 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP + Sbjct: 260 ISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 319 >gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 280 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRH+FAT +L NGGD+R IQ ILGHS L+TTQIYT+++ + E+Y + P Sbjct: 222 NVTPHVLRHTFATSILRNGGDIRFIQQILGHSSLATTQIYTHIDDNTLKEMYSRHMPK 279 >gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP + Sbjct: 259 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 318 >gi|332297599|ref|YP_004439521.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 311 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 32/58 (55%), Positives = 42/58 (72%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +S HTLRHSFATHLL+ G DLRS+Q +LGHS L TTQIYT+++ + +D+ P Sbjct: 250 VSAKVHTLRHSFATHLLAGGADLRSVQELLGHSDLVTTQIYTHIDDDELRLYHDEFFP 307 >gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R] Length = 293 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHPRA 293 >gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] Length = 308 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHLL G +L++IQ +LGH ++TT+IYT+++ + + + HP Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHPR 295 >gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR] gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR] Length = 300 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/56 (58%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT V +R+ ++ Q HP Sbjct: 244 SPHTLRHAFATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVARERLQALHAQHHPR 299 >gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] Length = 308 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + HT RHSFATHLL G +L++IQ +LGH ++TT+IYT+++ + + + HP Sbjct: 238 SISPHTFRHSFATHLLEGGANLQAIQLMLGHENIATTEIYTHIDRETLRHEIETYHPR 295 >gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 297 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 41/58 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHLL NG +LR+IQ +LGH + TT+IYT+++ + ++ + HP Sbjct: 239 TISPHTFRHSFATHLLENGANLRAIQLMLGHESIITTEIYTHIDHSYLSQVINTYHPR 296 >gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14] gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14] Length = 319 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 260 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 317 >gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] Length = 311 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H +RH+FATHLL+NG DLRS+QS+LGH+ +STT+IYT+V R+ + HP Sbjct: 248 VSPHVMRHAFATHLLANGADLRSVQSLLGHADVSTTEIYTHVLEARLKALVHDAHPLAQ 306 >gi|329847560|ref|ZP_08262588.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328842623|gb|EGF92192.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 303 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 33/57 (57%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRHSFATH+L +G DLRSIQ +LGH+ LSTTQ YT V+++R++ Y HP Sbjct: 246 ATPHALRHSFATHMLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHPK 302 >gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G R +Q +LGHS ++TTQIYT+V+++ + + + +HP Sbjct: 248 ISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHPRA 305 >gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 325 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H RHS AT +L G DLR +Q +LGH+ + TTQIYT+V ++R+ +++Q HP Sbjct: 248 SPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQAHPRA 304 >gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498] Length = 307 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V R+ + ++ HP + Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTHVLEARLHRLVNEHHPLV 306 >gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL001PA1] gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA2] gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL060PA1] gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA2] gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL103PA1] Length = 300 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q +LGH L+TTQIYT+V+++R+ + Q HP Sbjct: 245 PHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHPRA 300 >gi|256379909|ref|YP_003103569.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255924212|gb|ACU39723.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 325 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS ATHLL G DLR++Q +LGH+ L+TTQ+YT+V +R+ I+D+THP Sbjct: 268 VGPHGLRHSAATHLLEGGADLRTVQELLGHATLATTQLYTHVTVERLKAIHDRTHPR 324 >gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] Length = 305 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRHSFATHLL G R +Q +LGHS ++TTQIYT+V+++ + + + +HP Sbjct: 248 ISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQAWVMSHPRA 305 >gi|332521253|ref|ZP_08397709.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 296 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 42/59 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+ G DL +++ +LGHS L+ TQ+YT+ + ++ E+Y + HP + Sbjct: 238 SPHILRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTHNSIAQLKEVYLKAHPRSKK 296 >gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA3] gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA4] Length = 300 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q +LGH L+TTQIYT+V+++R+ + Q HP Sbjct: 245 PHGLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTHVSTERLRTAFRQAHPRA 300 >gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 293 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHSSLATTEIYTHTTFEELKKVYKQAHPRA 293 >gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] Length = 314 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL NG DLR +Q +LGH+ +STTQIYT+V +R+ + HP Sbjct: 254 ISPHALRHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDERIRAMVRDLHP 309 >gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773] Length = 302 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL++G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 241 TIHPHMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQSFFPRAK 300 Query: 62 QK 63 + Sbjct: 301 KD 302 >gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L G DLRS+Q +LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 252 PHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLRSVYEQAFPRA 307 >gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] Length = 293 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYTHATFEELKKVYKQAHPRA 293 >gi|62290876|ref|YP_222669.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 1 str. 9-941] gi|82700788|ref|YP_415362.1| site-specific tyrosine recombinase XerD [Brucella melitensis biovar Abortus 2308] gi|189025091|ref|YP_001935859.1| site-specific tyrosine recombinase XerD [Brucella abortus S19] gi|254690165|ref|ZP_05153419.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 6 str. 870] gi|254694656|ref|ZP_05156484.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 3 str. Tulya] gi|254731198|ref|ZP_05189776.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 4 str. 292] gi|256258419|ref|ZP_05463955.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 9 str. C68] gi|261214980|ref|ZP_05929261.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] gi|62197008|gb|AAX75308.1| XerD, integrase/recombinase [Brucella abortus bv. 1 str. 9-941] gi|82616889|emb|CAJ11988.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|189020663|gb|ACD73385.1| Phage integrase [Brucella abortus S19] gi|260916587|gb|EEX83448.1| integrase/recombinase xerD [Brucella abortus bv. 3 str. Tulya] Length = 307 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18] gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB18] Length = 320 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP + Sbjct: 260 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLADK 319 >gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] Length = 290 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 42/56 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH+ +STT+IYT V ++R+ I + HP Sbjct: 234 SPHGLRHAFATHLVNHGADLRVVQELLGHASISTTEIYTRVAAERLKSIVIEHHPR 289 >gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] Length = 329 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATHLL G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 272 ISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRYTHVSIEQLKARYAQAFPRA 329 >gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2] Length = 319 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L G DLR IQ +LGHS +S+TQIYT+V+ +R+ E Y Q HP Sbjct: 264 PHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQETYRQAHPRA 319 >gi|288920327|ref|ZP_06414639.1| integrase family protein [Frankia sp. EUN1f] gi|288348275|gb|EFC82540.1| integrase family protein [Frankia sp. EUN1f] Length = 465 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 5/63 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-----NVNSKRMMEIYDQTH 57 + H LRHSFA HLL G D+R +Q +LGH+ +STTQIYT + E+Y +H Sbjct: 351 ASPHVLRHSFAAHLLDRGADVRVVQELLGHASVSTTQIYTLKNTDLTTMDHLREVYTSSH 410 Query: 58 PSI 60 P Sbjct: 411 PRA 413 >gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] Length = 308 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 35/59 (59%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H +RHSFATHLL GGDLR+IQ +LGH+ LSTTQ YT V+ +M+IYD HP Sbjct: 249 TATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYTAVDQVHLMKIYDACHPKA 307 >gi|330993163|ref|ZP_08317100.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329759714|gb|EGG76221.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 349 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 41/59 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHSFATHL+ G DLR IQ +LGH+ LSTTQ YT + R+M+++ + HP T Sbjct: 283 ATPHALRHSFATHLMEGGADLRVIQDLLGHASLSTTQRYTLADEARLMDVWTRAHPHAT 341 >gi|269955978|ref|YP_003325767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] gi|269304659|gb|ACZ30209.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] Length = 329 Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLRS+Q +LGH+ L+TTQ YT+V+++R+ ++Y Q P Sbjct: 272 VAPHALRHSAATHLLQGGSDLRSVQEVLGHANLATTQRYTHVDAERLRQVYTQAFPRA 329 >gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] Length = 302 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 241 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|237816384|ref|ZP_04595377.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260546138|ref|ZP_05821878.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260755704|ref|ZP_05868052.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260758929|ref|ZP_05871277.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260884731|ref|ZP_05896345.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297247261|ref|ZP_06930979.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] gi|88952695|sp|Q2YR40|XERD_BRUA2 RecName: Full=Tyrosine recombinase xerD gi|90140493|sp|P0C122|XERD_BRUAB RecName: Full=Tyrosine recombinase xerD gi|237788451|gb|EEP62666.1| tyrosine recombinase XerD [Brucella abortus str. 2308 A] gi|260096245|gb|EEW80121.1| tyrosine recombinase xerD [Brucella abortus NCTC 8038] gi|260669247|gb|EEX56187.1| integrase/recombinase xerD [Brucella abortus bv. 4 str. 292] gi|260675812|gb|EEX62633.1| integrase/recombinase xerD [Brucella abortus bv. 6 str. 870] gi|260874259|gb|EEX81328.1| tyrosine recombinase xerD [Brucella abortus bv. 9 str. C68] gi|297174430|gb|EFH33777.1| tyrosine recombinase XerD [Brucella abortus bv. 5 str. B3196] Length = 309 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 253 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|254696281|ref|ZP_05158109.1| site-specific tyrosine recombinase XerD [Brucella abortus bv. 2 str. 86/8/59] Length = 307 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 251 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 306 >gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] Length = 300 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR++Q ILGH L+TTQIYT+V+++R+ + Q HP Sbjct: 245 PHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 300 >gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] Length = 313 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 43/61 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +L++I+ +LGH +STT+IYT+++S+ + E + HP Sbjct: 252 TVSPHTFRHSFATHLLDGGANLQAIRLMLGHEDISTTEIYTHIDSQTLREEILRHHPRNK 311 Query: 62 Q 62 + Sbjct: 312 E 312 >gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] Length = 305 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 247 ISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLSK 304 >gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C] Length = 312 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V R+ + ++ HP + Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLEARLHRLVNEYHPLVD 307 Query: 62 Q 62 Q Sbjct: 308 Q 308 >gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1] Length = 308 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 35/58 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATHLL +G L+ +Q LGH L+TTQIY V++ M E Y HP Sbjct: 244 VTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIYLTVSASWMKESYAAAHPRA 301 >gi|33594003|ref|NP_881647.1| site-specific tyrosine recombinase XerC [Bordetella pertussis Tohama I] gi|33564077|emb|CAE43345.1| putative integrase/recombinase [Bordetella pertussis Tohama I] gi|332383420|gb|AEE68267.1| site-specific tyrosine recombinase XerC [Bordetella pertussis CS] Length = 326 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 43/64 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ +STTQ+YT ++ + + YDQ HP + Sbjct: 263 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGR 322 Query: 63 KDKK 66 K + Sbjct: 323 KTSR 326 >gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 302 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 241 KVHPHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTHVTMAHLKSDYEKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118] Length = 302 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG D+RS+Q +LGHS LS TQIYT+V + + Y++ P Sbjct: 241 KVHPHELRHTFATAMLNNGADMRSVQELLGHSSLSATQIYTHVTTAHLKSDYEKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10] Length = 302 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 241 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str. McKiel] gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 308 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 247 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLQKALL-HHPLNK 304 >gi|167644210|ref|YP_001681873.1| site-specific tyrosine recombinase XerC [Caulobacter sp. K31] gi|167346640|gb|ABZ69375.1| integrase family protein [Caulobacter sp. K31] Length = 306 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 33/58 (56%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ ++ Y + HP Sbjct: 249 ATPHALRHSFATHLLGAGADLRSIQDLLGHASLSTTQRYTQVDAAGLLAAYGKAHPRA 306 >gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255] gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255] Length = 319 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 260 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 317 >gi|260760651|ref|ZP_05872994.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] gi|260671083|gb|EEX57904.1| integrase/recombinase xerD [Brucella abortus bv. 2 str. 86/8/59] Length = 309 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+HLL NG DLR++Q +LGH+ +STTQIYT+V +R+ ++ + HP Sbjct: 253 PHVLRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTHVLEERLHKLVSEHHPLA 308 >gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6] gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6] Length = 293 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA 293 >gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii RML369-C] gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C] Length = 305 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 247 ISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLSK 304 >gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 312 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL+ G D+R +Q +LGHS + TTQIY V + E + +HP Sbjct: 254 KVSPHALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAKVTPDLLRESWALSHPR 311 >gi|302381671|ref|YP_003817494.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302192299|gb|ADK99870.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 314 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 256 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTAVDAAHLLGAYAAAHPRA 314 >gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 305 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L++ G D+R +Q +LGH +STTQ YT++ ++++ +Y HP Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303 >gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21] gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21] Length = 299 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 42/62 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHSFATHLL G DLRS+Q +LGH+ L +TQIYT V++ +++ Y HP Sbjct: 238 TATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTKVDAASLLDTYRNAHPRER 297 Query: 62 QK 63 + Sbjct: 298 ED 299 >gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] Length = 297 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S H +RH+FATHL++NG D+R++Q +LGHS LS+TQ+YT+V + + Y +HP Sbjct: 239 SIYPHMIRHTFATHLINNGADIRTVQELLGHSHLSSTQVYTHVTKEHLRNTYLNSHPRA 297 >gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] Length = 297 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 47/63 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+H+L + GDLR++Q +LGH+ +++TQ+YT+++ + + +IYD HP Sbjct: 235 NVHPHVLRHSFASHVLQSSGDLRAVQEMLGHAHITSTQVYTHLDFQHLAKIYDAAHPRAK 294 Query: 62 QKD 64 +++ Sbjct: 295 KRN 297 >gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] Length = 324 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 44/55 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSFA+H+L + GDLR++Q +LGH+ ++TTQ+YT+++ + + +YDQ+HP Sbjct: 249 HPHLLRHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHP 303 >gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402] Length = 305 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L++ G D+R +Q +LGH +STTQ YT++ ++++ +Y HP Sbjct: 249 SPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTHITAEQLQNLYKTAHP 303 >gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] Length = 312 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR++Q +LGH +STTQ+YT+V R+ + ++ HP + Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTHVLEARLHRLVNEHHPLVD 307 Query: 62 Q 62 Q Sbjct: 308 Q 308 >gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM 519] gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium sticklandii] Length = 334 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRH+FATHLL NG ++R +Q +LGHS +STTQIYT+ NSK + E + Sbjct: 276 NVTPHKLRHTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHSNSKDLDEAIKKF 330 >gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2] Length = 304 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H +RH+FAT LL+ G D+RS+Q +LGH+ L+TTQ+YT++ +RM + + HP Sbjct: 245 ITPHAMRHTFATDLLAGGADMRSVQELLGHASLATTQLYTHLTPERMKDALRRAHPR 301 >gi|312136250|ref|YP_004003587.1| integrase family protein [Methanothermus fervidus DSM 2088] gi|311223969|gb|ADP76825.1| integrase family protein [Methanothermus fervidus DSM 2088] Length = 271 Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 40/53 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRHS+ATHLL G ++R IQ +LGHS LSTT+IYT V +K++ E YD+ Sbjct: 215 VTPHVLRHSYATHLLEKGLNIRYIQKLLGHSSLSTTEIYTKVTNKKLKEKYDK 267 >gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74] gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74] Length = 298 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/59 (49%), Positives = 42/59 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL+ G DL +I+ +LGHS L+ TQIYT+ + ++ + YDQ HP + Sbjct: 240 SPHVLRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHPKAKK 298 >gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999] Length = 303 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 45/59 (76%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V S+R+ I + HP Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVASERLTHIIESHHPR 302 >gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] Length = 299 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 40/58 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RHSFATHL+ G DLR++Q++LGH ++TT+IYT+++ + + + HP Sbjct: 241 EISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTHLDRSYLQQTIHEFHPR 298 >gi|114762822|ref|ZP_01442254.1| tyrosine recombinase XerD [Pelagibaca bermudensis HTCC2601] gi|114544432|gb|EAU47439.1| tyrosine recombinase XerD [Roseovarius sp. HTCC2601] Length = 141 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 44/61 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HTLRH+FATHLL NG DLR+IQ+ LGH+ ++TT+IYT+V +R+ E+ HP Sbjct: 81 KVTPHTLRHAFATHLLQNGADLRAIQTFLGHADVATTEIYTHVLEERLRELVLDHHPLAR 140 Query: 62 Q 62 + Sbjct: 141 E 141 >gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 299 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR++Q +LGH+ +STT+ YT+++ + + +IYD+ HP Sbjct: 241 VRLHPHVLRHSLATHMLRRGLDLRTLQELLGHASISTTERYTHLDLE-LRDIYDKCHPRA 299 >gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1] gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1] Length = 277 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 40/60 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ + H LRHS+AT L+S G DLR +Q +LGH+ L TTQIYT++ + + E + HP Sbjct: 218 LNVSPHVLRHSYATSLISGGADLRVVQELLGHASLLTTQIYTHIQKQDLKETVEVCHPLA 277 >gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii] Length = 335 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++++ + + HP Sbjct: 272 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKALL-HHPLNK 329 >gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1] Length = 312 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FA+HLL NG DLR +Q +LGH +STTQIYT+V +R+ + ++ HP Sbjct: 248 NFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTHVLEERLYCLVNEHHPLAD 307 Query: 62 QKD 64 Q+ Sbjct: 308 QQK 310 >gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] Length = 303 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RHSFAT+L+ G D+ +Q ILGHS + TTQIY +V+S++ +I + HP Sbjct: 238 NITPHMFRHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQADILREMHPRNK 297 Query: 62 QK 63 + Sbjct: 298 MQ 299 >gi|332882132|ref|ZP_08449766.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679883|gb|EGJ52846.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 293 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ DL S++ +LGH +STT+IYT+ + + E+Y+Q HP Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHPRA 293 >gi|332882567|ref|ZP_08450179.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679367|gb|EGJ52352.1| putative tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 332 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFA+HLL NG DL +++ +LGHS L++TQ+YTN + + Y + HP Sbjct: 264 VSPHILRHSFASHLLDNGADLNTVKELLGHSSLASTQVYTNTSLVELKRQYKKAHPRA 321 >gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 40/60 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS ATH++ +G DLR++Q+ LGH+ ++TTQ+YT+V + + Q HP + Sbjct: 242 ASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVALGHLKAVVRQHHPRGKR 301 >gi|315497300|ref|YP_004086104.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415312|gb|ADU11953.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 34/57 (59%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRHSFATHLL +G DLRSIQ +LGH+ LSTTQ YT V+++R++ Y HP Sbjct: 247 ATPHALRHSFATHLLGSGADLRSIQELLGHASLSTTQKYTQVDAERLLSAYAAAHPK 303 >gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] Length = 310 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 44/66 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLRSIQ++LGH + TT+IYT++++ + + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESVVTTEIYTHIDTTTLRQEILNHHPRNI 302 Query: 62 QKDKKN 67 + +++ Sbjct: 303 RYREEH 308 >gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] Length = 293 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293 >gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_17D04] Length = 361 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H +RHSFATH+L+ G DLR +Q +LGH+ +STTQIYT R+ + HP Sbjct: 298 VSPHVVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTKTRPDRLAGLVAAAHPLAK 356 >gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] Length = 293 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ DL S++ +LGH +STT+IYT+ + + E+Y+Q HP Sbjct: 237 SPHVLRHTFATSMLNHHADLESLKELLGHESISTTEIYTHTTFEELKEMYNQAHPRA 293 >gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] Length = 293 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L ++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293 >gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4] gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2] gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2] gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4] gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2] Length = 293 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293 >gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1] gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1] Length = 292 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 236 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 292 >gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1] gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1] Length = 283 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRH+FAT +L NGGD+R IQ ILGHS ++TTQIYT+++ + ++Y + P Sbjct: 226 VTPHVLRHTFATSVLRNGGDIRFIQQILGHSSVATTQIYTHLDDNALKDMYFKHRPR 282 >gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22] gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22] Length = 293 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293 >gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 321 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 46/63 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+HLL + GDLR++Q +LGHS + +TQ+YT+++ + + +IYDQ HP + Sbjct: 257 VHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRAKK 316 Query: 63 KDK 65 + K Sbjct: 317 RPK 319 >gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup] gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup] Length = 312 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V + + + ++ HP Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHPLAD 307 Query: 62 QKD 64 ++ Sbjct: 308 EQK 310 >gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53] gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisA53] Length = 326 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP + Sbjct: 267 ISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 326 >gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246] gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5] gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246] gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5] Length = 306 Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305 >gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] Length = 307 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YD HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAK 304 Query: 62 QKD 64 +++ Sbjct: 305 KRN 307 >gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A] Length = 293 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IYT+ + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIYTHATFEELKKVYKQAHPRA 293 >gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] Length = 316 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 44/63 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL + GDLR+IQ +LGH+ L TTQIYT+++ + + ++YD HP Sbjct: 248 VRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTHLDYQHLAQVYDAAHPRA 307 Query: 61 TQK 63 + Sbjct: 308 RRD 310 >gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305 >gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] Length = 316 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 42/60 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP + Sbjct: 257 ISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAEK 316 >gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] Length = 292 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RHSFA+H+L+NG D++S+Q +LGH ++TTQIY ++ E Y + +P Sbjct: 235 ITPHMIRHSFASHMLNNGADIKSVQEMLGHVDIATTQIYLTNKQSKLKEEYAKAYPRA 292 >gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 275 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ + H LRHSFAT L+ DLR +Q +LGH+ L+TTQIYT++ + + + + HP Sbjct: 213 LAVSPHVLRHSFATSLVLGNADLRVVQELLGHASLNTTQIYTHIQKENLKDTILKYHP 270 >gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str. Malish 7] gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 306 Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALLR-HPLNK 305 >gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. Iowa] gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii str. Iowa] Length = 306 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305 >gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160] gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160] Length = 307 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT ++ + + +YD HP Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYTGLDFQHLAHVYDSAHPRAK 304 Query: 62 QKD 64 +++ Sbjct: 305 KRN 307 >gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162] Length = 294 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA H+L NG D++S+Q +LGH+ +S+TQIY +N +M ++Y + HP Sbjct: 237 ITPHTLRHSFAAHMLQNGADVKSVQEMLGHADISSTQIYLGLNVSKMRDVYMKAHPR 293 >gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23] gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23] Length = 292 Score = 103 bits (259), Expect = 6e-21, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+NG L +I+S+LGH+ +STT+IYT+ +++ IY + HP Sbjct: 236 SPHVLRHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTHTTFEQLKRIYKEAHPRA 292 >gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 308 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 42/58 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL+ G DL S++ +LGH+ L++TQ+YT+ + + +++ ++HP Sbjct: 250 SPHILRHTFATHLLNKGADLNSVKELLGHASLASTQVYTHNSIAELKKVHLKSHPRNK 307 >gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] Length = 310 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH+F THLL G DLR+IQ +LGH RLSTTQ YT + ++ +YD+THP Sbjct: 252 VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHPRAK 310 >gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571] gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571] Length = 242 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 181 KVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 240 Query: 62 Q 62 + Sbjct: 241 E 241 >gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1] gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1] Length = 295 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL+ G DL +++ +LGH+ L++TQ+YT+ + + +Y + HP + Sbjct: 237 SPHMLRHTFATHLLNQGADLNAVKELLGHASLASTQVYTHNSLAELKNVYAKAHPRNKK 295 >gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H L HSFA+HLL + DLR++Q +LGHS + TTQIYT+++ + + +YD HP Sbjct: 233 NLHPHML-HSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAK 291 Query: 62 Q 62 + Sbjct: 292 R 292 >gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US] gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 270 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 209 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 268 Query: 62 Q 62 + Sbjct: 269 E 269 >gi|332969737|gb|EGK08751.1| tyrosine recombinase XerD [Kingella kingae ATCC 23330] Length = 294 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + H LRH+FATHL+++G DLR +Q +LGH+ L+TT+IYT+V + R+ ++ D HP Sbjct: 235 VGLSPHGLRHAFATHLVNHGADLRVVQLLLGHANLTTTEIYTHVANVRLKQVVDTHHPR 293 >gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] Length = 329 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/57 (56%), Positives = 42/57 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHS ATH+L G DLRS+Q +LGH+ L+TTQ+YT+V +R+ I+DQTHP Sbjct: 273 PHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTHVTVERLKAIHDQTHPRAQ 329 >gi|256390723|ref|YP_003112287.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256356949|gb|ACU70446.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 327 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H RH+ ATHL+ G DLR +Q +LGH+ L+TTQIYT+V ++R+ Y Q+HP Sbjct: 272 PHGFRHTAATHLIEGGADLRDVQELLGHATLATTQIYTHVTAERIKARYAQSHPRA 327 >gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] Length = 308 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 249 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 306 >gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN] gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN] Length = 270 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 209 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 268 Query: 62 Q 62 + Sbjct: 269 E 269 >gi|229820995|ref|YP_002882521.1| integrase family protein [Beutenbergia cavernae DSM 12333] gi|229566908|gb|ACQ80759.1| integrase family protein [Beutenbergia cavernae DSM 12333] Length = 380 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL+ G DLRS+Q ILGH+ L+TTQ YT+V +R+ + Q HP Sbjct: 325 PHGLRHSAATHLLAGGSDLRSVQEILGHASLATTQRYTHVTPERLRAAFRQAHPRA 380 >gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str. Madrid E] gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22] Length = 311 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++++ + + HP Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKKALL-HHPLNK 305 >gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] Length = 293 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGH ++TT+IY + + + ++Y Q HP Sbjct: 237 SPHVLRHTFATTMLNNDAELGAVKELLGHESIATTEIYAHATFEELKKVYKQAHPRA 293 >gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 302 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH ATH+L G DLR++Q +LGH+ L+TTQ YT+V++ R+ I Q HP Sbjct: 246 SPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302 >gi|331698493|ref|YP_004334732.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326953182|gb|AEA26879.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 310 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLR +Q +LGH+ LSTTQ+YT+V R+ ++DQ HP Sbjct: 255 PHGLRHAAATHLLDGGADLRYVQELLGHATLSTTQLYTHVTVDRLKVVHDQAHPRA 310 >gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM 16511] gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM 16511] Length = 276 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFAT L+ G DLR +Q +LGHS L TTQIYT++ + + + HP Sbjct: 215 LGVSPHVLRHSFATALILGGADLRVVQELLGHSSLITTQIYTHIERQHLRRTVETYHP 272 >gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640] gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 291 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++ + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHHSR 290 >gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 298 ISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >gi|332974597|gb|EGK11517.1| site-specific tyrosine recombinase XerC [Kingella kingae ATCC 23330] Length = 302 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 42/61 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFA HLL DLR++Q +LGHS LS+TQIYT ++ + ++YDQ HP + Sbjct: 234 ITPHMLRHSFAGHLLQASQDLRAVQDLLGHSSLSSTQIYTKLDLDHLAQVYDQAHPRARR 293 Query: 63 K 63 + Sbjct: 294 Q 294 >gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+ + + ++Y HP ++ Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHPRAQKE 298 >gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] Length = 294 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 42/63 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFA HLL D+R++Q +LGH+ LS+TQIYT ++ + +YD+THP + Sbjct: 232 ISPHMLRHSFAGHLLQASRDIRAVQDLLGHASLSSTQIYTKLDFDHLAAVYDETHPRARR 291 Query: 63 KDK 65 K Sbjct: 292 GKK 294 >gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21] gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21] Length = 331 Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 41/55 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +YD+ Sbjct: 274 KVTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYDRA 328 >gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH+FAT LL N DLRSIQ +LGH +STT IYT+V +++++ Y++ HP ++ Sbjct: 234 TPHMLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQILDDYNKYHPGNARR 293 Query: 64 DKKN 67 K Sbjct: 294 KKDE 297 >gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1] gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1] Length = 312 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 44/61 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V + + + ++ HP ++ Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEEGLYRLVNEHHPLADEQ 309 Query: 64 D 64 Sbjct: 310 K 310 >gi|33599180|ref|NP_886740.1| site-specific tyrosine recombinase XerC [Bordetella bronchiseptica RB50] gi|33575226|emb|CAE30689.1| putative integrase/recombinase [Bordetella bronchiseptica RB50] Length = 326 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 43/64 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DLR++Q +LGH+ +STTQ+YT ++ + + YDQ HP + Sbjct: 263 VHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRAGR 322 Query: 63 KDKK 66 K + Sbjct: 323 KTSR 326 >gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 308 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%), Gaps = 1/57 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL +G DLR++QS+LGH+ L TT+ YT+ + + + ++YD+ HP Sbjct: 253 HPHILRHSFATHLLRHGMDLRTLQSLLGHASLGTTEKYTHFDQE-LRDVYDRAHPRA 308 >gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 312 Score = 103 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 31/56 (55%), Positives = 37/56 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RHSFAT LL G D+R IQ +LGHS +STTQIYT +N K+ +I HP Sbjct: 250 TPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQKKILSTKHPR 305 >gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 355 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH+L G DLR +Q +LGHS L TTQ YT+V+ +++ Y Q P Sbjct: 298 ISPHALRHSAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703] gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703] Length = 292 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 291 >gi|328947550|ref|YP_004364887.1| integron integrase [Treponema succinifaciens DSM 2489] gi|328447874|gb|AEB13590.1| integron integrase [Treponema succinifaciens DSM 2489] Length = 410 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 37/46 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + + HT RHSFATHLL NG D+R+IQ +LGHS +STT IYT+V ++ Sbjct: 353 NASCHTFRHSFATHLLENGYDIRTIQELLGHSDVSTTMIYTHVLNR 398 >gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 316 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 42/58 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H+LRHSFA HLL NG D+R++Q ++GH+ L+ TQ Y ++ RM E+Y+++HP Sbjct: 259 TPHSLRHSFAAHLLENGADVRAVQEMMGHAGLAATQKYVHLTKSRMKEVYERSHPRAR 316 >gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] Length = 305 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 45/61 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RHSFATHLL NG D++ +Q +LGH++++TTQIYT+++ ++ + + HP ++ Sbjct: 239 ISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHPLSSK 298 Query: 63 K 63 + Sbjct: 299 E 299 >gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 313 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHS ATHLL G DLR++Q ILGHS + TTQ YT+V+++R+ + Q HP Sbjct: 256 ITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAAFGQAHPRA 313 >gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] Length = 311 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT R+ + HP T+ Sbjct: 248 VSPHVLRHSFATHMLNRGADLRSLQTLLGHADITTTQIYTATRPDRLAGLVASAHPLATK 307 >gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 296 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 41/56 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 M H LRHSFATHLL NG LR +Q++LGH LSTTQIYT+V+ +++ E+YD Sbjct: 234 MKLHPHMLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01] Length = 302 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 241 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] Length = 302 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 241 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] Length = 306 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 48/62 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L NG ++ ++ ILGHS L++TQ+YTN N +++ ++++Q HP ++K Sbjct: 244 SPHILRHSFATHVLDNGAEISKVKKILGHSSLASTQVYTNANIEQLKKVFNQAHPRASKK 303 Query: 64 DK 65 ++ Sbjct: 304 EE 305 >gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] Length = 307 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHS+A+HLL N D+R++Q +LGHS+L+TTQ YT ++ + IYD HP ++ Sbjct: 230 SPHMLRHSYASHLLQNARDIRAVQELLGHSQLATTQHYTKLDFDHLARIYDDAHPRAKRR 289 Query: 64 DKK 66 K Sbjct: 290 QGK 292 >gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 302 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT +++NG DLRS+Q +LGHS LS TQIYT+V + Y++ P Sbjct: 241 KVHPHELRHTFATAMINNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYEKYFPRNK 300 Query: 62 Q 62 + Sbjct: 301 E 301 >gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 323 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 +AH+ RHSFATHLL G DLR +Q +LGH ++TTQIYT+V ++R+ E + HP Sbjct: 244 SAHSFRHSFATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRRLKEAIESYHPR 299 >gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 319 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 39/60 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 HTLRHS+ATH+L G +LR +Q +LGH+ +STTQ+YT+++ + Y HP K Sbjct: 260 HPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIRSEYMAAHPRAQIK 319 >gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT LL+NG + +I+ +LGH+ L+ TQIYT+ + + + ++Y+Q HP Sbjct: 251 SPHVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTHNSFESLKKVYNQAHPRA 307 >gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str. Wilmington] Length = 306 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++++ + + HP Sbjct: 247 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQALL-HHPLNK 305 >gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] Length = 321 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S ++E + HP + Sbjct: 262 PVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVASDALIEKFHTFHPRL 320 >gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] Length = 321 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPRNA 302 Query: 62 QK 63 + Sbjct: 303 KD 304 >gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] Length = 309 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G DL +IQ ++GH ++TT+IYT+V+ + + HP Sbjct: 241 EISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVDRTALRADILRYHPRNQ 300 Query: 62 Q 62 Q Sbjct: 301 Q 301 >gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] Length = 310 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 44/66 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLRSIQ++LGH + TT++YT++++ + + HP Sbjct: 243 TISPHTLRHSFATALLEGGADLRSIQAMLGHESIVTTELYTHLDTTSLRQEILNHHPRNI 302 Query: 62 QKDKKN 67 + +++ Sbjct: 303 RYREEH 308 >gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATH+L++G DL SI+ +LGHS L++TQ+YTN + + +Y HP + Sbjct: 240 SPHMLRHTFATHMLNHGADLNSIKELLGHSSLASTQVYTNSSLAELKNVYQNAHPRNQK 298 >gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 293 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 KD 64 K Sbjct: 292 KS 293 >gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4] Length = 250 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLLSNG DLRS+Q +LGHS LS+TQ YT+V + + + Y HP Sbjct: 192 KIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTHVTKEHLRKTYLSHHPRA 250 >gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5] gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5] Length = 306 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305 >gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523] Length = 292 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHMLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLANVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] Length = 306 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305 >gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 319 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 41/59 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH+F THLL G DLR+IQ +LGH RLSTTQ YT + ++ +Y+QTHP + Sbjct: 257 VHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQLTVTQVQTVYEQTHPLAS 315 >gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] Length = 312 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 44/63 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRH+FA+HLL NG DLR++Q +LGHS +STTQIYT+V + + + ++ HP Sbjct: 248 SFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTHVLEEGLYRLVNEHHPLAD 307 Query: 62 QKD 64 + Sbjct: 308 TQK 310 >gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRHSFA HLL G D+RS+Q +LGHS ST Q+Y + + + +YD HP + Sbjct: 239 ITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPRTMR 298 Query: 63 KD 64 + Sbjct: 299 ES 300 >gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L+NG +L +++ +LGHS L++T IYT+ + + ++Y HP ++ Sbjct: 240 SPHVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTHTTFEELKKVY-HAHPRAQKE 298 >gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 301 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 36/59 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFAT LL D+R IQ ILGHS ++TTQIYT+V+ + EI HP Sbjct: 240 ITPHMFRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTHVSMAKQKEILSVKHPRNK 298 >gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 401 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%), Gaps = 1/61 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L++G DL S++ +LGH LSTT YT+++ +++ ++Y+ HP ++ Sbjct: 242 SPHVLRHSFATEMLNHGADLMSVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHPRAKKE 300 Query: 64 D 64 + Sbjct: 301 E 301 >gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114] gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114] Length = 293 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 235 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 292 >gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] Length = 292 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 234 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 291 >gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 293 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 44/62 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 KD 64 K Sbjct: 292 KS 293 >gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HTLRHSFATH+L+ G DLR +Q +LGH+ +STTQIYT+V++ R ++ YDQ Sbjct: 239 TPHTLRHSFATHMLNRGKDLREVQELLGHASISTTQIYTHVSNDRAVK-YDQA 290 >gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] Length = 270 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 209 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 268 Query: 62 Q 62 + Sbjct: 269 E 269 >gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 317 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 38/62 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RHSFAT+L+ G D+ +Q ILGHS + TTQIY +V +++ EI HP Sbjct: 251 NITPHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQAEILRDMHPRNN 310 Query: 62 QK 63 K Sbjct: 311 MK 312 >gi|145590194|ref|YP_001156791.1| phage integrase family protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048600|gb|ABP35227.1| tyrosine recombinase XerC subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 333 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 42/59 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H +RHSFA+H+L + DLR++Q +LGH+ +++TQIYT+++ + + + YD+ HP Sbjct: 271 VHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDFQHLAQAYDKAHPRAK 329 >gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 44/64 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H +RH+FA+HLL G DLR+IQ +LGH+ +STTQIYT++ ++ ++ HP Sbjct: 234 NISPHIIRHAFASHLLEGGADLRTIQILLGHTDISTTQIYTHLLPDKLQKLVQDYHPLAK 293 Query: 62 QKDK 65 ++ K Sbjct: 294 KEKK 297 >gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 42/64 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H +RH+FA+HLL G DLR+IQ +LGH +STTQIYT++ ++ ++ HP Sbjct: 254 NISPHIIRHAFASHLLEGGADLRTIQILLGHIDISTTQIYTHLLPDKLQKLVQDYHPLAK 313 Query: 62 QKDK 65 + K Sbjct: 314 KLKK 317 >gi|282852166|ref|ZP_06261522.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] gi|282556688|gb|EFB62294.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] Length = 139 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V K + Y Sbjct: 81 KVHPHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTHVTMKHLQADYQNF 135 >gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 294 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ + +++ +++Q HP Sbjct: 238 SPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAVFEQAHPKA 294 >gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 293 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+N L S++ +LGH LSTT+IYT+ +++ IYD+ HP Sbjct: 237 SPHVLRHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTHTTFEQLRRIYDKAHPRA 293 >gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] Length = 290 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH FA+HLL+ G DLRS+Q +LGH ++TTQIYT+V S+R+ + D HP Sbjct: 228 VSPHVLRHCFASHLLARGADLRSLQMLLGHVDIATTQIYTHVLSERLRALLDTCHP 283 >gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] Length = 309 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 41/60 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRHSFA HLL NG DL+ IQ +LGH+ +++TQ+Y N+ + R +Y+ HP + Sbjct: 249 ITPHTLRHSFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNRFQNVYNHCHPMAKK 308 >gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] Length = 276 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 41/56 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+FAT +L NGGD+R IQ ILGH+ ++TTQIYT+++ + ++Y + P Sbjct: 219 VTPHVLRHTFATSVLRNGGDIRFIQQILGHASVATTQIYTHIDDGTLKDMYKKHRP 274 >gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] Length = 306 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGHS +STTQIYT++ + + + HP T Sbjct: 248 VSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTHLQTHHLKKALL-HHPLNT 305 >gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] Length = 308 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 41/58 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FA+HLL NG DLR +Q++LGH+ +STTQIYT+V +R+ + HP Sbjct: 249 VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLA 306 >gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] Length = 345 Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 43/58 (74%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH FA+H+LS+ GDLR +Q +LGHS +STTQIYT+++ + ++YD+ HP + Sbjct: 288 PHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHPRSRR 345 >gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] Length = 307 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHSFA+ L+S G D+R +Q +LGH +STTQ YT+V + + +Y + HP Sbjct: 249 KISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTHVTPELLQMLYHRAHP 305 >gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington] Length = 297 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++++ + + HP Sbjct: 238 NVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLHTNHLKQALL-HHPLNK 296 >gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] Length = 290 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 36/58 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FATHLL+NG DLR++Q +LGH LSTT YT++ + Y HP Sbjct: 233 IHPHKLRHTFATHLLNNGADLRTVQELLGHVNLSTTSKYTHITKAHLRNSYLSAHPRA 290 >gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] Length = 307 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 43/65 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT+IYT++++ + E HP Sbjct: 243 TISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTHIDTTTLREEILNHHPRNM 302 Query: 62 QKDKK 66 +K + Sbjct: 303 KKQAE 307 >gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 313 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 41/63 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHS AT +L G DLR +Q +LGH+ ++TTQIYT+V ++R+ +Y + HP Sbjct: 251 EIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLRVVYKRAHPRSG 310 Query: 62 QKD 64 +D Sbjct: 311 SQD 313 >gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] Length = 342 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLLS G DLR+IQ +LGH+ + TTQIYT V +R+++ + + HP Sbjct: 281 PVKPHLLRHSFATHLLSGGADLRAIQEMLGHATIGTTQIYTAVEERRLLDQHARFHPRNQ 340 Query: 62 QK 63 ++ Sbjct: 341 EE 342 >gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462] Length = 182 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/51 (56%), Positives = 40/51 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFAT LL NG DLR +Q +LGHS +STTQIYT+++++ ++ + Sbjct: 119 VTPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVI 169 >gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 320 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 40/59 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRH+F TH+L G DLR+IQ +LGH RLSTTQ YT + ++ +Y++THP Sbjct: 262 VHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQLTVGQVQRVYEETHPRAR 320 >gi|325525691|gb|EGD03450.1| site-specific tyrosine recombinase XerC [Burkholderia sp. TJI49] Length = 138 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 45/62 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFATH+L + GDLR++Q +LGH+ ++ TQ+YT+++ + + +IYD HP + Sbjct: 77 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYTSLDFQHLAKIYDSAHPRAKK 136 Query: 63 KD 64 +D Sbjct: 137 RD 138 >gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 324 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 HTLRH++ATHLL G DLR +Q +LGH+ ++TTQ+YT+++ + Y HP Sbjct: 259 HPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTHIDISHIRSEYLLAHPRA 315 >gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 297 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 1/58 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHS ATHLL G DLR++Q +LGHS + TT++YT+ + + + ++YD++HP Sbjct: 239 HPHILRHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRAQ 295 >gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium EB000_37G09] Length = 302 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 41/65 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +AH LRHSFATHLL+ G DLRS+Q +LGH+ ++TTQIYT R+ + HP Sbjct: 238 KVSAHVLRHSFATHLLNRGADLRSLQMLLGHADIATTQIYTRTRQDRLAGLVSDAHPLAE 297 Query: 62 QKDKK 66 K+ Sbjct: 298 SDRKE 302 >gi|16124599|ref|NP_419163.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus CB15] gi|221233288|ref|YP_002515724.1| site-specific tyrosine recombinase XerC [Caulobacter crescentus NA1000] gi|13421495|gb|AAK22331.1| integrase/recombinase XerC, putative [Caulobacter crescentus CB15] gi|220962460|gb|ACL93816.1| integrase/recombinase, XerC-CodV family [Caulobacter crescentus NA1000] Length = 304 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 38/57 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RH+FATHLL G DLR+IQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 247 VTPHAFRHAFATHLLGAGADLRAIQDLLGHASLSTTQRYTQVDAAGLLAAYQAAHPK 303 >gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803] Length = 385 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 32/51 (62%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATH+L NG DLR IQ +LGHS+ TT IYT+V K +M+I Sbjct: 305 KVTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAKKDLMKI 355 >gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 294 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 1/56 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHSFATHLL G DLR++Q +LGH+ ++TT+ Y + + + + +IYD+THP Sbjct: 240 PHILRHSFATHLLRRGMDLRTLQELLGHATIATTEKYVHFDLE-LRDIYDKTHPRA 294 >gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] Length = 306 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 43/66 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR IQ +LGHS + TT++YT++++ + + + HP Sbjct: 241 TISPHTLRHSFATALLRGGADLRVIQDLLGHSNIGTTEMYTHLDNTSLRKDILEHHPRNI 300 Query: 62 QKDKKN 67 + ++ Sbjct: 301 KNKNQH 306 >gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] Length = 293 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 41/60 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FATH+L+NG L +++ +LGH+ LS TQ+YT+ + ++ IY HP +K Sbjct: 234 SPHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTHNSFAQINSIYSHAHPRGRKK 293 >gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299242|ref|YP_004441163.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 314 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHSFATHLL G DL +IQ ++GH ++TT++YT+V+ + + HP Sbjct: 241 EISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTHVDRSALRADILRYHPRNQ 300 Query: 62 Q 62 Q Sbjct: 301 Q 301 >gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170] gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170] Length = 297 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FATHLL+ G DL S++ +LGHS L++TQ+YT+ + + +++ HP + Sbjct: 238 SPHILRHTFATHLLNKGADLNSVKELLGHSSLASTQVYTHNSIAELKKVHSSAHPRGKK 296 >gi|298293261|ref|YP_003695200.1| integrase family protein [Starkeya novella DSM 506] gi|296929772|gb|ADH90581.1| integrase family protein [Starkeya novella DSM 506] Length = 328 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 36/60 (60%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHSFATHLL GGDLRSIQ +LGH+ LSTTQIY V+S +M + HP Sbjct: 269 SATPHALRHSFATHLLGRGGDLRSIQELLGHASLSTTQIYAAVDSAALMAAWRAAHPRAR 328 >gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] Length = 316 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 33/54 (61%), Positives = 40/54 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL NG D+R+IQ +LGHS LSTTQIYT+V+ + +YD Sbjct: 245 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMHTLKNVYDDA 298 >gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_05I22] Length = 314 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 43/61 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H +RHSFATH+L+ G DLRS+Q++LGH+ ++TTQIYT+ R+ + HP ++ Sbjct: 254 VTPHKIRHSFATHMLNRGADLRSLQNMLGHADIATTQIYTSSRPDRLAGLVADAHPLASK 313 Query: 63 K 63 + Sbjct: 314 R 314 >gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] Length = 323 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 42/65 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+FA+HLL G DLR +Q +LGH+ +STTQIYT++ S + + + HP Sbjct: 247 VSPHVLRHAFASHLLEGGADLRIVQQLLGHADISTTQIYTHIGSGSLAKTLEHRHPLGNT 306 Query: 63 KDKKN 67 +++ Sbjct: 307 GNRQQ 311 >gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] Length = 289 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/56 (50%), Positives = 43/56 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL+++G DLR +Q +LGH L+TT+IYT+V + R+ ++ +Q HP Sbjct: 233 SPHGLRHAFATHLVNHGADLRVVQLLLGHESLTTTEIYTHVANARLKQVVEQYHPR 288 >gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 293 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT LL+ G D+ +I+ +LGH+ L+ TQ+YT+ + +R+ IY Q HP Sbjct: 237 SPHVLRHTFATALLNAGADINAIKELLGHASLAATQVYTHNSIERIKTIYKQAHPKA 293 >gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 287 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHS AT ++ NG D+R +Q +LGH+ ++TT++YT+V ++ EIY + Sbjct: 226 KIHPHLFRHSTATMMIENGADIRIVQELLGHASITTTEVYTHVEKSKLREIYKK 279 >gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL G DL SI+ +LGHS ++ TQ YT+ + ++ E+Y HP + Sbjct: 238 SPHVLRHSFATHLLDQGADLNSIKDLLGHSSIAATQHYTHSSMAKIKEVYKSAHPREKKN 297 Query: 64 D 64 Sbjct: 298 K 298 >gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 305 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H +RH++AT LL G DLR +Q +LGH LSTTQ+YT+++ R+ E HP Sbjct: 246 SLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRSK 305 >gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5] Length = 298 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 36/56 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +R +Q +LGH + TT+IYT+++S + ++ P Sbjct: 242 ISPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLDSDHLRRTLEEHLP 297 >gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 314 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 41/65 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+FAT LL D++ IQ++LGHS ++TTQIYT+VN + +I HP Sbjct: 250 KITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQKKILSSKHPRKK 309 Query: 62 QKDKK 66 + ++ Sbjct: 310 MEMEE 314 >gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] Length = 302 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 45/65 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFA H+L GD+R++Q +LGH R+STTQIYT ++ +++ ++YD+ HP + Sbjct: 230 ITPHMLRHSFAGHMLQACGDIRAVQDLLGHQRISTTQIYTFLDFQQLSKVYDRAHPRAQK 289 Query: 63 KDKKN 67 N Sbjct: 290 NHASN 294 >gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] Length = 308 Score = 101 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FA+HLL+NG DLR IQ +LGH+ ++TT+IYT+V + + + + HP Sbjct: 249 KVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLDENIKSLVFEHHPLA 307 >gi|306821127|ref|ZP_07454743.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550820|gb|EFM38795.1| integrase XerD [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 329 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 38/54 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+FATH L NG +LR +Q ILGHS +STTQIYT+ + + ++ ++ Sbjct: 272 ITPHKLRHTFATHFLKNGANLRIVQEILGHSSISTTQIYTHSDKQDLVNAMKKS 325 >gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 300 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHL++ G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 240 KIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFPRAN 299 Query: 62 Q 62 + Sbjct: 300 K 300 >gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 324 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 36/58 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL G D+RSIQ +LGH + TT+IYT+V+ + HP Sbjct: 239 PLSPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLKLHHPR 296 >gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas gingivalis W83] gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas gingivalis W83] Length = 400 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 43/60 (71%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L++G DL S++ +LGH LSTT YT+++ +++ ++Y+ HP ++ Sbjct: 242 SPHVLRHSFATEMLNHGADLISVKELLGHDSLSTTVQYTHISFEQLRQMYN-AHPRAKKE 300 >gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] Length = 312 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 42/63 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR++Q +LGH +STTQIYT+V + + ++ HP Q Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTHVLETGLYHLVNEHHPLADQD 309 Query: 64 DKK 66 K Sbjct: 310 KAK 312 >gi|58696879|ref|ZP_00372392.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225630697|ref|YP_002727488.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|58536905|gb|EAL60089.1| tyrosine recombinase XerD [Wolbachia endosymbiont of Drosophila simulans] gi|225592678|gb|ACN95697.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 328 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL++G ++ IQ +LGH+ LSTTQIYT++ ++++ + +HP Sbjct: 265 KISPHVIRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP 321 >gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] Length = 308 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 251 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307 >gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 375 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 32/52 (61%), Positives = 38/52 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRHSFATHLL NG D+R IQ +LGHS TT+IYT+V ++ MEI D Sbjct: 321 VTPHMLRHSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFMEIKD 372 >gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043] gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043] Length = 298 Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRHSFA+HLL + DLR++Q +LGH+ LSTTQ+YT ++ + + + YDQ HP ++ Sbjct: 233 HPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLADAYDQAHPRARRR 292 >gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 304 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 38/54 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RHS AT L++NG D+R +Q ILGH +STT+IYT+V + + EIY++ Sbjct: 244 NVYPHIFRHSVATMLINNGADIRIVQEILGHVNISTTEIYTHVGKRELKEIYNK 297 >gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 296 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 45/61 (73%), Gaps = 2/61 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS--KRMMEIYDQTHPS 59 T H LRHSFA HL+ NG +L+S+Q +LGHS +STTQ+Y ++N + +M++Y++THP Sbjct: 236 EITPHMLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVYMHLNKETEELMDVYNKTHPR 295 Query: 60 I 60 Sbjct: 296 A 296 >gi|198284453|ref|YP_002220774.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667286|ref|YP_002427120.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248974|gb|ACH84567.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519499|gb|ACK80085.1| tyrosine recombinase XerC [Acidithiobacillus ferrooxidans ATCC 23270] Length = 314 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 29/65 (44%), Positives = 45/65 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 HTLRHS A+HLL + GDLR++Q LGH+ + TT IYT+++ +++ ++YDQ HP Sbjct: 242 PLHPHTLRHSAASHLLQSSGDLRAVQEYLGHAGIGTTAIYTHMDYQQLAQVYDQAHPRSR 301 Query: 62 QKDKK 66 + D+ Sbjct: 302 RGDQD 306 >gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] Length = 307 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATH+L G DLRS+Q LGHS L+TTQ YT+V+++R+ +Y+Q P Sbjct: 252 PHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLRSVYEQAFPRA 307 >gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis URRWXCal2] gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2] Length = 306 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHSFA+HLL G DLR IQ +LGH+ +STTQIYT++ + + + HP Sbjct: 248 ISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTHLQTNHLKKALL-HHPLNK 305 >gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 333 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 44/59 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H +RHSFA+H+L + DLR++Q +LGH+ +++TQIYT+++S+ + + YD+THP Sbjct: 271 VHPHMMRHSFASHVLQSSQDLRAVQEMLGHASIASTQIYTSLDSQHLAQAYDKTHPRAK 329 >gi|254994002|ref|ZP_05276192.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] Length = 128 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V + + Y + HP Sbjct: 70 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKEHLKATYMKHHPRA 128 >gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 322 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT LL++G DL +I+ +LGH+ LS TQIYT+ + +R+ IY Q HP Sbjct: 266 SPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNSVERLKSIYKQAHPKA 322 >gi|241992604|gb|ACS73657.1| IntI [uncultured bacterium] Length = 314 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 272 PATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 314 >gi|241992502|gb|ACS73585.1| IntI [uncultured bacterium] Length = 307 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 265 PATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 307 >gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM 16994] gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHS+AT L+ G DLR +Q +LGH+ L TTQIYT+V + + E + HP Sbjct: 212 LGVSPHALRHSYATALILGGADLRVVQELLGHASLLTTQIYTHVQKQNLQETVLRHHPMA 271 >gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 329 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS ATH++ NG D+R +Q LGH+ LS+TQIYT+V+ ++ + Y Q HP Sbjct: 271 EISPHGLRHSAATHMVENGADIRQVQEFLGHATLSSTQIYTHVSLGKLKDSYTQAHPRA 329 >gi|224023591|ref|ZP_03641957.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM 18228] gi|224016813|gb|EEF74825.1| hypothetical protein BACCOPRO_00295 [Bacteroides coprophilus DSM 18228] Length = 207 Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ +L +++ +LGH LSTT++YT+ + + ++Y+Q HP Sbjct: 151 SPHVLRHTFATSMLNHQAELEAVKELLGHESLSTTEVYTHTTFEELKKVYEQAHPRA 207 >gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 299 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 45/58 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL G DLR++Q++LGH+ ++TT+IYT+V + +++E+ + HP + Sbjct: 235 VSPHVLRHAFATHLLGGGADLRAVQAMLGHADIATTEIYTHVEATQLVELVNARHPLV 292 >gi|254445476|ref|ZP_05058952.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198259784|gb|EDY84092.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 459 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H +RHSFATHLL +G D+R++Q +LGH+ + TT IY +V ++ Sbjct: 403 VTPHVMRHSFATHLLEDGYDIRTVQELLGHASVETTMIYLHVMNR 447 >gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] Length = 301 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HT+RH+ ATH L NG DL++IQ++LGH LS+T IYT+V++ +IY Q HP Sbjct: 243 NVTPHTIRHTIATHWLENGMDLKTIQTLLGHESLSSTTIYTHVDATLKRKIYKQAHPRA 301 >gi|33594905|ref|NP_882548.1| site-specific tyrosine recombinase XerC [Bordetella parapertussis 12822] gi|33564981|emb|CAE39928.1| putative integrase/recombinase [Bordetella parapertussis] Length = 326 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 43/64 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+H+L + DLR++Q +LGH+ +STTQ+YT ++ + + YDQ HP + Sbjct: 263 VHPHVLRHNFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRADR 322 Query: 63 KDKK 66 K + Sbjct: 323 KTSR 326 >gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] Length = 296 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 42/64 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ + + Y HP + Sbjct: 232 LKKSPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRM 291 Query: 61 TQKD 64 T K+ Sbjct: 292 TNKE 295 >gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 308 Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL +G DLRS+Q +LGH++L+TT+IYT++ R+ ++ Q HP Sbjct: 252 SPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPR 307 >gi|149198438|ref|ZP_01875483.1| integron integrase [Lentisphaera araneosa HTCC2155] gi|149138444|gb|EDM26852.1| integron integrase [Lentisphaera araneosa HTCC2155] Length = 424 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/41 (73%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G DLR+IQ +LGH +STTQIYT+V Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHV 409 >gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469] gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469] Length = 270 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/51 (58%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHSFATHLL G D+R IQ +LGH L TTQIYT+V +K + ++ Sbjct: 216 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 266 >gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 300 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FATHL++ G D+R++Q +LGH LSTTQ+YT+V + + + Y P Sbjct: 240 KIHPHMLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTHVTRESLQKNYQNFFPRAN 299 Query: 62 Q 62 + Sbjct: 300 K 300 >gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72] Length = 331 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 44/62 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322 Query: 61 TQ 62 + Sbjct: 323 YR 324 >gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] Length = 293 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++ ++ S++ +LGH+ + TT++YT+ +++ +Y HP Sbjct: 237 TPHVLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTHTTFEQLKRVYKNAHPRA 293 >gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] Length = 299 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 46/55 (83%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH+FATHLL++G DLR++Q +LGH+ ++TT+IYT+V+ RM ++ + +HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHP 295 >gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] Length = 292 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 44/55 (80%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHPRA 292 >gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT] gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT] Length = 292 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 44/55 (80%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ + +++++Y + HP Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKIVDVYKKAHPRA 292 >gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] Length = 291 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+ I D+ H Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHHSR 290 >gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289] gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289] Length = 292 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 236 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 292 >gi|218282387|ref|ZP_03488669.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] gi|218216673|gb|EEC90211.1| hypothetical protein EUBIFOR_01251 [Eubacterium biforme DSM 3989] Length = 300 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 44/65 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +AH+ RHSFATHLL DLR +Q +LGHS +STTQIYT++ KR+ +YD+ I Sbjct: 236 KISAHSFRHSFATHLLDGDADLRIVQELLGHSNISTTQIYTHIQDKRLSSVYDRCFQKIE 295 Query: 62 QKDKK 66 + ++ Sbjct: 296 KSKEE 300 >gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] Length = 297 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 40/60 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL+ G +L +++ +LGHS L+ TQIYT+ + + I+ + HP + Sbjct: 238 SPHILRHSFATHLLNEGANLNAVKELLGHSSLAATQIYTHNSIAELKNIHSKAHPRNNKD 297 >gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829] gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 337 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 42/58 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RHSFAT LLS+G DLRS+Q +LGH+ L+TTQIYT+V+ + + + +P Sbjct: 280 ATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPRA 337 >gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102] gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102] Length = 215 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLRS+Q +LGHS ++TTQIYT+V + R+ + D+ H Sbjct: 157 SLSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSR 214 >gi|60550189|gb|AAX24191.1| integrase [Xanthomonas campestris pv. begoniae] gi|60550194|gb|AAX24195.1| integrase [Xanthomonas campestris pv. begoniae] Length = 339 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH +STTQIYT+V Sbjct: 275 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVSTTQIYTHV 317 >gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse] gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse] Length = 315 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 43/60 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FA+HLL NG DLR++Q +LGHS ++TTQIYT+V + + ++ HP ++ Sbjct: 250 SPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTHVLEAGLYRLVNEHHPLADEQ 309 >gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 296 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATHLL NG DL +++ +LGH+ L+ TQ+YT+ + + Y HP T K Sbjct: 235 SPHVLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHSSIAELKNQYKNAHPRETNK 294 Query: 64 D 64 + Sbjct: 295 E 295 >gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169] gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1] Length = 330 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 45/67 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGTLTKVYDHAHPRA 322 Query: 61 TQKDKKN 67 + + Sbjct: 323 YRTKNNH 329 >gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 294 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 238 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >gi|319787522|ref|YP_004146997.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] gi|317466034|gb|ADV27766.1| integron integrase [Pseudoxanthomonas suwonensis 11-1] Length = 335 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRH FATHLL +G D+R++Q +LGH ++TTQIYT+V ++ Sbjct: 279 PVTPHTLRHCFATHLLESGADIRTVQELLGHKDVATTQIYTHVLNR 324 >gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] Length = 292 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 38/59 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++G L S++ +LGH +STT+IYT+ +++ + Y HP Sbjct: 234 KLTPHVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTHTTFEQLKQAYKDAHPRA 292 >gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8] Length = 331 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 44/62 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322 Query: 61 TQ 62 + Sbjct: 323 YR 324 >gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd Length = 290 Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats. Identities = 29/53 (54%), Positives = 42/53 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Sbjct: 238 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 290 >gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 265 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 31/52 (59%), Positives = 38/52 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHSFATHLL +G DLR IQ +LGH+ TT IYT+V+SK + I Sbjct: 207 IGVTLHTLRHSFATHLLESGTDLRYIQELLGHNSPKTTMIYTHVSSKSLQNI 258 >gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 282 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 43/59 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T+ H LRH+FATHLL+ G DL +I+ +LGH+ LS TQIYT+ + +++ E++ + HP Sbjct: 224 KTSPHVLRHTFATHLLNRGADLNAIKELLGHANLSATQIYTHNSIQKLKEVFQKAHPKA 282 >gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 302 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP ++ Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296 >gi|91774765|ref|YP_544521.1| integron integrase [Methylobacillus flagellatus KT] gi|91708752|gb|ABE48680.1| Integron integrase [Methylobacillus flagellatus KT] Length = 334 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 37/46 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V ++ Sbjct: 275 PATPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHVLNR 320 >gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319] gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319] Length = 292 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y+ HP Sbjct: 236 SPHVLRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTHTTFEQLKKVYNNAHPRA 292 >gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 302 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP ++ Sbjct: 238 SPHVLRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296 >gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 294 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y K M E+YD HP Sbjct: 238 ITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPR 293 >gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1] gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1] gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1] gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1] Length = 330 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 45/67 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322 Query: 61 TQKDKKN 67 + + Sbjct: 323 YRTKNNH 329 >gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 42/55 (76%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLL++G DLR +Q++LGH+ +STTQIYT++ +R+ + HP Sbjct: 248 SPHVLRHAFASHLLAHGADLRIVQTLLGHADVSTTQIYTHILDERLKSMVRDLHP 302 >gi|42520949|ref|NP_966864.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410690|gb|AAS14798.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 328 Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL++G ++ IQ +LGH+ LSTTQIYT++ ++++ + +HP Sbjct: 265 KISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP 321 >gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 310 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQ+YT++N + + +Y S+ +K Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQQSLEKK 306 Query: 64 DK 65 K Sbjct: 307 PK 308 >gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] Length = 294 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ +L +I+ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNQAHPRA 294 >gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453] gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453] Length = 294 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 35/58 (60%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y K M E+YD HP Sbjct: 237 EITPHTLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY-QSTKKSMKEVYDHYHPR 293 >gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 294 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FAT +L NG DL SI+ +LGHS L+ TQ+YT+ + K + ++Y THP Sbjct: 237 SPHTLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTHTSFKELQKLYQNTHPRA 293 >gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7] gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E] Length = 330 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 45/67 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH FA+H+LS+ GDLR+IQ +LGH +STTQIYT+V+ + ++YD HP Sbjct: 263 LNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTHVDFGALTKVYDHAHPRA 322 Query: 61 TQKDKKN 67 + + Sbjct: 323 YRTKNNH 329 >gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 100 bits (251), Expect = 6e-20, Method: Composition-based stats. Identities = 30/51 (58%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL NG DLR IQ +LGH+ STT+IYT+V+ + +I Sbjct: 288 KVSVHTLRHSFATHLLENGTDLRYIQELLGHASPSTTEIYTHVSERDFAKI 338 >gi|332678799|gb|AEE87928.1| Tyrosine recombinase xerC [Francisella cf. novicida Fx1] Length = 292 Score = 100 bits (251), Expect = 7e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896] Length = 307 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 42/66 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H RH+FAT LL N D R+IQ ILGHS ++TTQIYTN+ S + +EI +P + Sbjct: 241 INITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKIEIMKYKNPRL 300 Query: 61 TQKDKK 66 K Sbjct: 301 KISTNK 306 >gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 43/66 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++Y ++++ + E Q HP Sbjct: 243 TISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTTLREEILQHHPRNM 302 Query: 62 QKDKKN 67 ++ + Sbjct: 303 KEKDDD 308 >gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 255 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 30/51 (58%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHSFATHLL G D+R IQ +LGH L TTQIYT+V +K + ++ Sbjct: 201 NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 251 >gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] Length = 291 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291 >gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88] gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88] Length = 303 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 46/60 (76%), Gaps = 1/60 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 S ++TLRHSFA HLL NG D++S+Q +LGHS L+ TQIY+ +++K ++ E+Y +THP Sbjct: 244 SINSYTLRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIAEVYKKTHPRA 303 >gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida GA99-3549] gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112] gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549] gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] Length = 302 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP ++ Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296 >gi|255616612|ref|XP_002539765.1| conserved hypothetical protein [Ricinus communis] gi|223502581|gb|EEF22619.1| conserved hypothetical protein [Ricinus communis] Length = 117 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGH+ LSTTQIYT+V R+ +++Q HP Sbjct: 61 SPHTLRHAFATHLLNHGADLRVVQLLLGHADLSTTQIYTHVAQARLKSLHEQHHPR 116 >gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3] gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3] Length = 302 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFAT +L+NG +L +++ +LGHS L++T +YT+ + + ++Y HP ++ Sbjct: 238 SPHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRAKKE 296 >gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291 >gi|241992505|gb|ACS73587.1| IntI [uncultured bacterium] Length = 312 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V Sbjct: 270 PVSPHTLRHSFATHLLQSGYDIRTVQELLGHSDVSTTMIYTHV 312 >gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275] gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136] gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|282856363|ref|ZP_06265642.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455] gi|282585734|gb|EFB91023.1| tyrosine recombinase XerD [Pyramidobacter piscolens W5455] Length = 297 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS ATHLL G DLR++Q LGHS ++TT+ Y + + + + ++YD+ HP Sbjct: 243 PHVLRHSIATHLLRRGMDLRTLQEFLGHSSIATTEKYLHFDLE-LRDVYDRAHPRA 297 >gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 314 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 42/56 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHL +NG DL +++ +LGH+ L++TQ+YT+ + +++ + Y + HP Sbjct: 257 SPHILRHTFATHLTNNGADLNAVKELLGHASLASTQVYTHNSIEKLKDAYRKAHPK 312 >gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 292 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] Length = 334 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H RHSFAT+L+ ++R IQ +LGH+ ++TTQIYT V +++ EI HP Sbjct: 262 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHPRN 321 Query: 61 TQKDKKN 67 +N Sbjct: 322 KINIGEN 328 >gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG] gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG] Length = 292 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 263 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 209 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 263 >gi|291612849|ref|YP_003523006.1| integron integrase [Sideroxydans lithotrophicus ES-1] gi|291582961|gb|ADE10619.1| integron integrase [Sideroxydans lithotrophicus ES-1] Length = 330 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 3/58 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI---YDQTH 57 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V +K + D+ H Sbjct: 273 ATPHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHVLNKGGRGVTSPLDKMH 330 >gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291 >gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 44/61 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQIYT++N +++ ++D+ HP + Sbjct: 232 IHPHMLRHSFASHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRAKK 291 Query: 63 K 63 K Sbjct: 292 K 292 >gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291 >gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 317 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 41/56 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H RH+ AT +L NG DLR IQ +LGH+ + TTQ+YT+V+ K++ E+Y+ THPS Sbjct: 255 CHLFRHNTATTMLDNGADLRHIQEMLGHASILTTQLYTHVSRKKLSEVYEATHPSA 310 >gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 311 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S +AH LRHSFAT LL NG DLR++Q +LGH +STTQIYT+V + ++ P+I Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303 >gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502] gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291 >gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium] Length = 292 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ H LRH+ ATH L + DLRS+Q LGH + +TQ+YT+++ + ++YD+ HP Sbjct: 229 VNVHPHMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRA 288 Query: 61 TQ 62 + Sbjct: 289 KK 290 >gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 290 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH++ATHLL+ G DL +I+ +LGH+ L+ TQIYT+ + +++ + + Q HP Sbjct: 234 SPHVLRHTYATHLLNRGADLNAIKELLGHANLAATQIYTHNSIEKLKKTHQQAHPKA 290 >gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] Length = 308 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 34/59 (57%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S T H LRHSFATHLL G DLRSIQ +LGH+ LSTTQ YT V++ ++ Y HP Sbjct: 250 SATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQRYTEVDAAALLSAYSAAHPRA 308 >gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] Length = 291 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 237 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 291 >gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] Length = 299 Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 38/54 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 HT RH+ ATHLL G +LR +Q LGH+ +STTQIYT+V+++R+ + HP Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHPR 298 >gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] Length = 323 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 38/55 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFAT LL+NG D+R++Q ILGHS + TTQIYT V+ KR E+ Sbjct: 250 EATPHYLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEVLLNY 304 >gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19] gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11] gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18] gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2] gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] Length = 291 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 290 >gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 294 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HLL NG DLRS+Q +LGHS LSTT +Y K M E+YD HP Sbjct: 238 ITPHTLRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPR 293 >gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] Length = 298 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFATHLL G +R +Q +LGH + TT+IYT++ + + ++ P Sbjct: 242 ISPHTFRHSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297 >gi|58584819|ref|YP_198392.1| integrase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419135|gb|AAW71150.1| Integrase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 392 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RHSFATHLL D+R IQ +LGHS L TTQ+YT++N + + +Y + Sbjct: 327 VSPHAFRHSFATHLLQENVDIRFIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQ-QSLE 385 Query: 63 KDKK 66 KDKK Sbjct: 386 KDKK 389 >gi|58583855|ref|YP_202871.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625654|ref|YP_453026.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574819|ref|YP_001911748.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428449|gb|AAW77486.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369594|dbj|BAE70752.1| site-specific recombinase IntIA [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519271|gb|ACD57216.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 291 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 227 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 269 >gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594] Length = 291 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|325922658|ref|ZP_08184403.1| integron integrase [Xanthomonas gardneri ATCC 19865] gi|325546862|gb|EGD17971.1| integron integrase [Xanthomonas gardneri ATCC 19865] Length = 298 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q +LGH ++TTQIYT+V Sbjct: 234 SATCHTLRHSFATHLLEDGHDIRTVQELLGHKDVATTQIYTHV 276 >gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] Length = 297 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 40/61 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FAT +L+N D+ S++ +LGH L T++YT+ + + ++Y + HP ++K Sbjct: 237 SPHVLRHTFATVMLNNDADIESVRHLLGHESLKATEVYTHTTFEHLKKVYSKAHPRSSRK 296 Query: 64 D 64 Sbjct: 297 K 297 >gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 326 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+FAT + G D+ S+Q +LGHS +STTQIYT+V R+ E ++ +P Sbjct: 257 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNI 315 Query: 62 QKDKK 66 Q +KK Sbjct: 316 QFNKK 320 >gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] Length = 291 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 44/58 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H LRH+FATHL+++G DLR++Q +LGH+ ++TTQIYT+V + R+ I D+ H Sbjct: 233 SLSPHGLRHAFATHLVNHGVDLRAVQLMLGHANINTTQIYTHVANIRLKNIVDEHHSR 290 >gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1] gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1] Length = 296 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 42/59 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATHLL+ G DL +++ +LGH+ L+ TQ+YT+ + + ++Y ++HP + Sbjct: 238 SPHVLRHSFATHLLNQGADLNAVKELLGHTSLAATQVYTHNSIAELKKVYAKSHPRNLR 296 >gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC 824] Length = 323 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+FAT + G D+ S+Q +LGHS +STTQIYT+V R+ E ++ +P Sbjct: 254 KLTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATNK-NPFNI 312 Query: 62 QKDKK 66 Q +KK Sbjct: 313 QFNKK 317 >gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] Length = 290 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 37/57 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFAT +L++ L S++ +LGH LSTT+IYT+ +++ IY HP Sbjct: 234 TPHVLRHSFATAMLNHNAGLESVRKLLGHESLSTTEIYTHTTFEQLKRIYKNAHPRA 290 >gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 38/58 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RHSFATHL+ G +++++Q +LGH ++TT+IY ++ + + + HP Sbjct: 241 NISPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPR 298 >gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090] gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02] gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18] gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140] gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1] gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1] gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332] gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679] gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035] gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090] gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae TCDC-NG08107] Length = 291 Score = 99 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 290 >gi|58584989|ref|YP_198562.1| site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419305|gb|AAW71320.1| Site-specific recombinase XerD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 328 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL +G + IQ ILGH+ LSTTQIYT++ +K++ + +HP Sbjct: 265 KISPHVIRHSFATHLLDSGASIMLIQKILGHTNLSTTQIYTHIANKKLKDKLANSHP 321 >gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] Length = 294 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710] Length = 291 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] Length = 291 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] Length = 315 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RHS AT LLSNG D+R +Q ILGH+ +STT+IYT+V + IY++ Sbjct: 256 NVYPHIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNK 309 >gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 312 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H RHSFAT+L+ ++R IQ +LGH+ ++TTQIYT V +++ EI HP Sbjct: 240 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHPRN 299 Query: 61 TQKDKKN 67 +N Sbjct: 300 KINIGEN 306 >gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)] Length = 282 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T HTLRH+FAT L++G D+R IQ +LGHS LS+TQIYT+V+ +R+ + D+ + Sbjct: 219 KVTPHTLRHTFATLSLASGLDIREIQELLGHSSLSSTQIYTHVDPQRLKQKTDEFY 274 >gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 164 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT++ + R+ ++ + H Sbjct: 107 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHIANVRLQKVVKEHHSR 163 >gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603] gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603] Length = 333 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/58 (53%), Positives = 36/58 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+ ATHLL G DLRS+Q ILGHS L TTQ YT+V R+ + Y HP Sbjct: 276 VRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRYTHVTMTRLRDTYAHAHPRA 333 >gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-EC] gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-LC] Length = 308 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 250 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 306 >gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 309 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQIYT++N + + +Y + +K Sbjct: 247 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 306 Query: 64 DK 65 K Sbjct: 307 SK 308 >gi|332297767|ref|YP_004439689.1| integron integrase [Treponema brennaborense DSM 12168] gi|332180870|gb|AEE16558.1| integron integrase [Treponema brennaborense DSM 12168] Length = 398 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL NG D+R++Q +LGHS + TT IYT+V +K Sbjct: 344 CHTFRHSFATHLLENGYDIRTVQELLGHSDVKTTMIYTHVLNK 386 >gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 299 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 38/54 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 HT RH+ ATHLL G +LR +Q LGH+ +STTQIYT+V+++R+ + HP Sbjct: 245 HTFRHTCATHLLHGGANLREVQEFLGHADISTTQIYTHVDARRLASYHHMYHPR 298 >gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7] gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] Length = 292 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 42/55 (76%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH LS TQIY++++ K ++ E+Y ++HP Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIAEVYKKSHPRA 292 >gi|25986875|gb|AAN16061.1| integron integrase [Pseudomonas stutzeri] Length = 320 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V ++ Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHVLNR 309 >gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579] gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149] gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33] Length = 291 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442] gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 291 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|89147498|gb|ABD62609.1| integrase [uncultured bacterium] Length = 163 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 VTCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] Length = 291 Score = 99 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 306 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQIYT++N + + +Y + +K Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 303 Query: 64 DK 65 K Sbjct: 304 SK 305 >gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190] gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902] Length = 291 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia solanacearum GMI1000] Length = 347 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 46/59 (77%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+ ATH+L G D+R +Q++LGH++L+TT+IYT+V+ + + I+D THP+ Q++ Sbjct: 265 HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDATHPARLQRE 323 >gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 424 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 30/41 (73%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G DLR+IQ +LGH +STTQIYT+V Sbjct: 369 TVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHV 409 >gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] Length = 301 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++G L S++ +LGH LSTT+IYT+ +++ +Y HP Sbjct: 243 SPHVLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTHTTFEQLKNVYTNAHPRA 299 >gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] Length = 304 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 33/55 (60%), Positives = 39/55 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +AHTLRHSFAT +L G DLR IQ +LGH +STTQIYT+VN K + YDQ Sbjct: 234 PISAHTLRHSFATAILDTGVDLRIIQELLGHQDISTTQIYTHVNKKTLKREYDQF 288 >gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] Length = 294 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] Length = 297 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++ L S++ +LGH LSTT+IYT+ +++ ++Y HP Sbjct: 241 TPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 297 >gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] Length = 271 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRHSFA+ L+ G DLR +Q +LGHS L TTQIYT++ + + + HP Sbjct: 212 LGVSPHVLRHSFASSLIIGGADLRVVQELLGHSSLETTQIYTHIQKQNLQDTMIHYHP 269 >gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC 824] gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA 2018] Length = 292 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 1/60 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 A+TLRHSFA HLL NG D+++IQ +LGHS ++TTQIY+ + K R+ E+Y +THP Sbjct: 233 KINAYTLRHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 305 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RHSFAT+L+ G D+ +Q I GHS + TTQIY ++ +K+ EI + HP + Sbjct: 239 NITPHMFRHSFATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQAEILREMHPRNS 298 >gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 434/Bu] gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2tet1] gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu] gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298 >gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D/UW-3/CX] gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276] gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276s] gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9768] gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11222] gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11074] gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9301] Length = 300 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298 >gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2] gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/150] Length = 300 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298 >gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70] gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s] Length = 300 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298 >gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 293 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DL +++ +LGHS L+ TQ+YT+ + ++ +++DQ HP Sbjct: 237 SPHVLRHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTHNSLDKLKKVFDQAHPKA 293 >gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 279 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH FATH++ NG ++R++Q +LGH ++TTQIYT++ K + +++ Sbjct: 220 IDVHPHMLRHMFATHMIENGANIRAVQEMLGHRSITTTQIYTDITDKAVEDVFHN 274 >gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 205 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH L+ TQIY++++ K ++ E+Y HP Sbjct: 151 TLRHSFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAEVYKNAHPRA 205 >gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 311 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 31/59 (52%), Positives = 41/59 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 S +AH LRHSFAT LL NG DLR++Q +LGH +STTQIYT+V + ++ P+I Sbjct: 245 SLSAHKLRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETKERAMNKIRPAI 303 >gi|171472293|gb|ACB46849.1| integrase [Pseudomonas stutzeri] Length = 320 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V ++ Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTVQELLGHSDVKTTMIYTHVLNR 309 >gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17] gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17] Length = 304 Score = 99.6 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++YT++ + + + HP Sbjct: 243 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPRNM 302 Query: 62 QK 63 ++ Sbjct: 303 RQ 304 >gi|325261284|ref|ZP_08128022.1| recombinase [Clostridium sp. D5] gi|324032738|gb|EGB94015.1| recombinase [Clostridium sp. D5] Length = 313 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 37/53 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFAT LL+NG ++R +Q ++GH+ + TTQIYT V+ R E+ + Sbjct: 252 TPHYLRHSFATQLLNNGANIRDVQELMGHNSIVTTQIYTEVSLNRKKEVLMKY 304 >gi|13959816|gb|AAK49012.1| USC7-1p [Myxococcus xanthus] Length = 168 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHLL+ G DLR++Q +LGHS LSTTQIYT V + + +++ + HP Sbjct: 111 ISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYTLVAREHLQKLHARHHPR 167 >gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 311 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 42/61 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS ATH++ +G DLRS+Q++LGH+ + TTQ+YT++ R+ E++ HP Sbjct: 245 ASPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLALGRLKEVHRLHHPRGRS 304 Query: 63 K 63 + Sbjct: 305 R 305 >gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 39/60 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+ +I + HP Sbjct: 246 TITPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHPRRK 305 >gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica] gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica] gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica] Length = 340 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 42/63 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + E+++QTHP+ + Sbjct: 258 SCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVAIGHLKEVHEQTHPAERKP 317 Query: 64 DKK 66 K+ Sbjct: 318 KKQ 320 >gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer RA-YM] Length = 293 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L NG ++ ++ ILGH+ L++TQ+YT+ + ++ ++ + HP + Sbjct: 235 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHPRGKK 293 >gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868] Length = 291 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 41/59 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHSFATH+L NG ++ ++ ILGH+ L++TQ+YT+ + ++ ++ + HP + Sbjct: 233 SPHVLRHSFATHVLENGAEIAQVKEILGHASLASTQVYTSTDVNKLKKVLNSFHPRGKK 291 >gi|295692920|ref|YP_003601530.1| integrase/recombinase [Lactobacillus crispatus ST1] gi|295031026|emb|CBL50505.1| Integrase/recombinase [Lactobacillus crispatus ST1] Length = 112 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFAT +L+NG DLRS+Q +LGHS LS TQIYT+V + Y + P Sbjct: 51 KVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTHVTMAHLKSDYQKYFPRNK 110 Query: 62 Q 62 + Sbjct: 111 E 111 >gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] Length = 313 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRHSFAT LL G DLR+IQ++LGH + TT++YT++ + + + HP Sbjct: 252 TISPHTLRHSFATALLKGGADLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPRNM 311 Query: 62 QK 63 ++ Sbjct: 312 RQ 313 >gi|260889471|ref|ZP_05900734.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254] gi|260860882|gb|EEX75382.1| tyrosine recombinase XerC [Leptotrichia hofstadii F0254] Length = 91 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFAT LL+NG D+R +Q +LGHS ++TTQ+YT+V+ + +IY THP Sbjct: 31 EITPHVFRHSFATELLNNGVDIRYLQELLGHSSIATTQVYTHVSKAFLRDIYMNTHPLAK 90 Query: 62 Q 62 + Sbjct: 91 E 91 >gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803] gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803] Length = 296 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 42/62 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFATHLL+ G +L +++ +LGHS L+ TQ+YT+ + + +I+ HP Sbjct: 234 LKKSPHILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTHNSIAELSKIHQNAHPRN 293 Query: 61 TQ 62 ++ Sbjct: 294 SK 295 >gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D(s)2923] gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/11023] Length = 300 Score = 99.2 bits (247), Expect = 2e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 43/57 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 242 ISPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298 >gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399] gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385] Length = 291 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14] gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14] Length = 304 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRHSFAT LL G DLR+IQ +LGH + TT+IYT++ + + + HP + Sbjct: 244 ISPHTLRHSFATALLKGGADLRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHPRNLK 303 >gi|60256815|gb|AAX14926.1| integrase [Xanthomonas perforans] Length = 339 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 275 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317 >gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis A/HAR-13] gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/Jali20/OT] gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/TZ1A828/OT] gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13] gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 44/57 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL+N DLR IQ +LGHSR+S+T+IYT+V S+ ++E + HP Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIEKFHTYHPR 298 >gi|74317233|ref|YP_314973.1| integron integrase [Thiobacillus denitrificans ATCC 25259] gi|74056728|gb|AAZ97168.1| integron integrase [Thiobacillus denitrificans ATCC 25259] Length = 326 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATHLL G D+R++Q +LGH +STT IYT+V +K Sbjct: 270 PVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 315 >gi|223369842|gb|ACM88790.1| integrase [uncultured bacterium] Length = 163 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013] gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013] gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355] gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196] Length = 291 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 386 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 37/51 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL G D+R IQ +LGH+R TT +YT+V+ + +++I Sbjct: 305 KVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSRQDLLDI 355 >gi|325916803|ref|ZP_08179054.1| integron integrase [Xanthomonas vesicatoria ATCC 35937] gi|325536954|gb|EGD08699.1| integron integrase [Xanthomonas vesicatoria ATCC 35937] Length = 339 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 275 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 317 >gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] Length = 292 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N L S++ +LGH + TT++YT+V +++ + Y++ HP Sbjct: 236 SPHVLRHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTHVTFEQLKKAYNEAHPRA 292 >gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] Length = 376 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 37/52 (71%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++ T H LRHSFATHLL +G D+R IQ +LGHS TT+IYT+V + +I Sbjct: 319 ITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHVATTTFKKI 370 >gi|332526187|ref|ZP_08402322.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2] gi|332110027|gb|EGJ10655.1| integrase/recombinase [Rubrivivax benzoatilyticus JA2] Length = 297 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 236 PATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 278 >gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 306 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQ+YT++N + + +Y S+ +K Sbjct: 244 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 303 Query: 64 DK 65 K Sbjct: 304 SK 305 >gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4] gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4] Length = 293 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FAT LL+ G D+ +++ +LGHS LS TQ+YT+ + + + IY HP Sbjct: 236 SPHVLRHTFATSLLNGGADINAVKELLGHSSLSATQVYTHTSFEELYNIYKHAHPRAK 293 >gi|223369814|gb|ACM88776.1| integrase [uncultured bacterium] Length = 163 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 291 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + + + + H Sbjct: 234 ISPHSLRHAFATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] Length = 292 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 44/55 (80%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP Sbjct: 238 TLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHPRA 292 >gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia amoebophila UWE25] gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25] Length = 329 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 39/59 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RH+ ATH L NG DL++IQ +LGH LSTT IYT V++K ++Y HP Sbjct: 271 KVTPHTIRHTIATHWLENGMDLKTIQLLLGHRSLSTTTIYTQVSTKLKQKVYADAHPRA 329 >gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 329 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 40/59 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RH+ ATH L NG DL++IQ ILGH L+TT IYT V+ ++YDQTHP Sbjct: 271 KVTPHTIRHTIATHWLENGMDLKTIQMILGHISLATTTIYTQVSKGLKKKVYDQTHPRA 329 >gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT LL G D+R IQ LGHS ++TTQIYT+V+ + +YD+ Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDK 274 >gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152] Length = 385 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 33/51 (64%), Positives = 40/51 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHS+ATHLL NG D+R IQS+LGHSR TT IYT+V K +M+I Sbjct: 308 AVTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKRKDLMQI 358 >gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] Length = 292 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 43/57 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL+ G DL++I+ +LGH+ L+ TQ+YT+ + +++ EI+ Q HP Sbjct: 236 SPHILRHTFATHLLNRGADLQAIKELLGHTSLAATQVYTHNSMEKLKEIFLQAHPRA 292 >gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2] gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] Length = 310 Score = 98.8 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/61 (49%), Positives = 41/61 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHSFATHL++N +R IQ +LGHS L+TTQIYT+++ M +Y THP + Sbjct: 247 PHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYTDLDHTSMTNVYMDTHPRAVKNT 306 Query: 65 K 65 + Sbjct: 307 E 307 >gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b] gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b] Length = 356 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFA LL+NG +++ +Q ++GHS ++ TQ+YT+VN + +IY H Sbjct: 296 EITPHVFRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTHVNKTFLKDIYMNAHSLAK 355 Query: 62 Q 62 + Sbjct: 356 E 356 >gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] Length = 278 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 40/62 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQIYT++N + + +Y + +K Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKK 275 Query: 64 DK 65 K Sbjct: 276 SK 277 >gi|71909039|ref|YP_286626.1| integron integrase [Dechloromonas aromatica RCB] gi|71848660|gb|AAZ48156.1| Integron integrase [Dechloromonas aromatica RCB] Length = 327 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V +K Sbjct: 272 ATPHTFRHSFATHLLQSGYDIRTVQELLGHADVTTTMIYTHVLNK 316 >gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 319 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH FATH+L G ++++Q +LGH L TTQ Y ++ +R+ YD + +++ Sbjct: 256 ASPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVNDDLSE 315 Query: 63 KD 64 +D Sbjct: 316 RD 317 >gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHS ATHLL++G ++ IQ ILGH+ LSTTQIYT++ ++++ + +HP Sbjct: 265 KISPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANEKLKDKLADSHP 321 >gi|89147355|gb|ABD62538.1| integrase [uncultured bacterium] Length = 163 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL NG D+R++Q +LGH +STTQIYT+V Sbjct: 120 PATPHTFRHSFATHLLENGYDIRTVQDLLGHKDVSTTQIYTHV 162 >gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 304 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 38/54 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + + + ++ Sbjct: 243 VTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRKSLERA 296 >gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 166 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/46 (69%), Positives = 37/46 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRH+FATHLL NG DLR +Q ILGHS +STTQIYTN+ K Sbjct: 121 NVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYTNLTQK 166 >gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC] gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC] Length = 298 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T+IYT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHVAADTLMENFLSYHPR 296 >gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 294 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++G + S++ +LGH++LSTT+IYT+ +++ +Y + HP Sbjct: 238 SPHVLRHTFATAMLNHGAGIESLKRLLGHAKLSTTEIYTHTTFEQLKRVYIEAHPRA 294 >gi|223369792|gb|ACM88765.1| integrase [uncultured bacterium] Length = 163 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL NG D+R++Q +LGH+ + TTQIYT V Sbjct: 120 PVTCHTFRHSFATHLLQNGCDIRTVQELLGHTDVKTTQIYTRV 162 >gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 295 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 39/54 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HTLRHSFAT L+ G D+R IQ +LGHS L+TTQ+Y +V+ +R+ Y++ Sbjct: 227 KVTPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQVYAHVSRERLKRDYER 280 >gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] Length = 293 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 36/57 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L+N + S++ +LGH LSTT+IYT+ +++ Y HP Sbjct: 237 TPHVLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYYSAHPRA 293 >gi|33322355|gb|AAQ06901.1|AF496235_1 integrase/recombinase [Lactobacillus delbrueckii subsp. lactis] Length = 106 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/57 (54%), Positives = 39/57 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFAT +L+NG DLRS+Q +LGH LSTTQIYT+V+ + + Y Q P Sbjct: 49 AHPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTAEYRQHFPR 105 >gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 293 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/56 (48%), Positives = 41/56 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRH+FATHLL+ G DL +I+ +LGH+ L+ TQ+YT+ + ++ I+DQ HP Sbjct: 237 SPHVLRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTHNSIDKLKAIFDQAHPK 292 >gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] Length = 292 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 44/55 (80%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH+ ++TTQIY++++ K +++++Y + HP Sbjct: 238 TLRHSFAVHLLQNGADMKSVQELLGHNTIATTQIYSSISKKNKIVDVYKKAHPRA 292 >gi|257458544|ref|ZP_05623679.1| integron integrase [Treponema vincentii ATCC 35580] gi|257443978|gb|EEV19086.1| integron integrase [Treponema vincentii ATCC 35580] Length = 426 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL +G D+R+IQ +LGHS +STT +YT+V ++ Sbjct: 369 PIGCHTFRHSFATHLLESGYDIRTIQELLGHSDVSTTMVYTHVLNR 414 >gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str. Madrid E] gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii] gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22] Length = 305 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL G DLRSIQ +LGH LSTTQ YT + K + +Y+ +P Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302 >gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411] gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411] Length = 283 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/51 (56%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ K + +I Sbjct: 219 TVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 269 >gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii RML369-C] gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C] Length = 305 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+ RHSFA+HLL NG DLRSIQ +LGH LSTTQ YT + K + Y HP Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302 >gi|304322147|ref|YP_003855790.1| integrase/recombinase XerC [Parvularcula bermudensis HTCC2503] gi|303301049|gb|ADM10648.1| integrase/recombinase XerC, putative [Parvularcula bermudensis HTCC2503] Length = 315 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+FATHLL+ G DLR++Q++LGHS L TTQ YT +++ R++ ++ HP Sbjct: 254 ATPHALRHAFATHLLAAGTDLRTLQTLLGHSSLKTTQGYTEIDAGRLLAVHAAAHPRGRS 313 Query: 63 KD 64 D Sbjct: 314 SD 315 >gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39] gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39] Length = 294 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+ IY Q HP Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSIERLKSIYKQAHPKA 294 >gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str. Chicago] Length = 297 Score = 98.4 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RHSFA+ L+ G D+R Q +LGH+ +STTQ Y +V S+++ ++Y + HP Sbjct: 241 SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPR 296 >gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] Length = 296 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 41/60 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HTLRH+FATHLL G +LR+IQ +LGH+ LSTTQ+YTN++ + + + P Sbjct: 236 NISPHTLRHTFATHLLEGGANLRAIQMMLGHTDLSTTQVYTNIDRRFIRQQILDHFPRNK 295 >gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] Length = 306 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 35/59 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+FAT LL D+R IQ +LGHS ++ TQIYT+V + +I HP Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVAVSKQKDILINKHPR 301 >gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016] gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 295 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH LS TQIY+ V K ++ E+Y ++HP Sbjct: 241 TLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHPRA 295 >gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ +L +I+ +LGH L+TT++YT+ + + ++Y+ HP Sbjct: 238 SPHVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYTHTTFEELKKVYNLAHPRA 294 >gi|189425308|ref|YP_001952485.1| TetR family transcriptional regulator [Geobacter lovleyi SZ] gi|189421567|gb|ACD95965.1| putative transcriptional regulator, TetR family [Geobacter lovleyi SZ] Length = 325 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V +K Sbjct: 267 NVTPHTLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHVLNK 312 >gi|300112795|ref|YP_003759370.1| integron integrase [Nitrosococcus watsonii C-113] gi|299538732|gb|ADJ27049.1| integron integrase [Nitrosococcus watsonii C-113] Length = 327 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R+IQ +LGH ++TT IYT+V Sbjct: 269 PGSCHTFRHSFATHLLENGYDIRTIQELLGHKDVNTTMIYTHV 311 >gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555] gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555] Length = 292 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH LS TQIY+ V K ++ E+Y ++HP Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAEVYKKSHPRA 292 >gi|253995768|ref|YP_003047832.1| integron integrase [Methylotenera mobilis JLW8] gi|253982447|gb|ACT47305.1| integron integrase [Methylotenera mobilis JLW8] Length = 321 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL +G D+R++Q +LGHS +STT IYT+V +K Sbjct: 265 ATPHTFRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHVLNK 309 >gi|189500094|ref|YP_001959564.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] gi|189495535|gb|ACE04083.1| putative transcriptional regulator, TetR family [Chlorobium phaeobacteroides BS1] Length = 408 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 37/51 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL G D+R++Q +LGH+ L TT IYT+V K M+ + Sbjct: 353 ASVHTLRHSFATHLLEAGYDIRTVQELLGHANLQTTMIYTHVAKKNMLGVV 403 >gi|292491385|ref|YP_003526824.1| integron integrase [Nitrosococcus halophilus Nc4] gi|291579980|gb|ADE14437.1| integron integrase [Nitrosococcus halophilus Nc4] Length = 321 Score = 98.0 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH + TTQIYT+V Sbjct: 263 PASCHTLRHSFATHLLESGYDIRTVQELLGHQDIRTTQIYTHV 305 >gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 289 Score = 98.0 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/51 (56%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V+ K + +I Sbjct: 228 NVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHVSKKAIDKI 278 >gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens] Length = 465 Score = 98.0 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++++QTHP+ + + Sbjct: 390 CHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKKVHEQTHPAERKPE 449 Query: 65 KK 66 +K Sbjct: 450 QK 451 >gi|99034662|ref|ZP_01314606.1| hypothetical protein Wendoof_01000576 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 191 Score = 98.0 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 42/57 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHSFATHLL++G ++ IQ +LGH+ LSTTQIYT++ ++++ + +HP Sbjct: 128 KISPHVVRHSFATHLLNSGANIVLIQKVLGHTNLSTTQIYTHIANEKLKDKLADSHP 184 >gi|15822601|gb|AAK73287.1| DNA integrase IntIPac [Pseudomonas alcaligenes] Length = 321 Score = 98.0 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 37/46 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q +LGH+ + TTQIYT+V ++ Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTVQELLGHADVKTTQIYTHVLNR 309 >gi|313637890|gb|EFS03211.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 291 Score = 98.0 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ HTLRHSFAT+LL NG D+R IQ LGHS + TTQ YT++ K + HP Sbjct: 232 INLHPHTLRHSFATNLLENGCDIRYIQEFLGHSSILTTQRYTHLQLKNKTNTIMKHHPRA 291 >gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia sennetsu str. Miyayama] gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia sennetsu str. Miyayama] Length = 307 Score = 98.0 bits (244), Expect = 4e-19, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 39/54 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL G +R IQ +LGH+ L++T++YT +N++ +ME Y Q Sbjct: 248 ITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNAESLMEKYKQF 301 >gi|227461189|gb|ACP39541.1| putative integron integrase [uncultured microorganism] Length = 316 Score = 97.6 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q ++GH +STT IYT+V Sbjct: 274 PASCHTLRHSFATHLLESGQDIRTVQELMGHKDVSTTMIYTHV 316 >gi|297570372|ref|YP_003691716.1| integron integrase [Desulfurivibrio alkaliphilus AHT2] gi|296926287|gb|ADH87097.1| integron integrase [Desulfurivibrio alkaliphilus AHT2] Length = 465 Score = 97.6 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHSFATHLL+ G D+R++Q +LGH+ +STT IYT+V ++ Sbjct: 409 VNCHALRHSFATHLLAAGYDIRTVQELLGHADVSTTMIYTHVLNR 453 >gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 278 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RHSFATHLL D+RSIQ +LGHS L TTQ+YT++N + + +Y S+ +K Sbjct: 216 SPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTHLNYQDVFNMYKNFQKSLNKK 275 Query: 64 DK 65 K Sbjct: 276 SK 277 >gi|28866934|gb|AAM95157.1| site-specific recombinase IntIA [Listonella anguillarum] Length = 320 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SVSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 278 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 43/54 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HTLRH++AT LL+NG D+R+IQ++LGH++L+TTQ+YT V+ RM++ D Sbjct: 220 VTPHTLRHTYATLLLNNGVDIRTIQTLLGHAQLTTTQVYTKVDVARMVDAIDSA 273 >gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] Length = 320 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 NVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg] Length = 301 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 45/59 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+LRH+FATHLL+N DLR IQ +LGH+R+S+T+IYT+V S+ ++E + HP + Sbjct: 242 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHPRSS 300 >gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str. Wilmington] gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington] Length = 305 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL G DLRSIQ +LGH LSTTQ YT + K + +Y+ +P Sbjct: 248 TAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTAYP 302 >gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss] gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum MopnTet14] Length = 299 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 45/59 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+LRH+FATHLL+N DLR IQ +LGH+R+S+T+IYT+V S+ ++E + HP + Sbjct: 240 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHPRSS 298 >gi|222111885|ref|YP_002554149.1| integron integrase [Acidovorax ebreus TPSY] gi|221731329|gb|ACM34149.1| integron integrase [Acidovorax ebreus TPSY] Length = 332 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATH+L G D+R++Q +LGH +STT IYT+V +K Sbjct: 275 PCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320 >gi|254513557|ref|ZP_05125621.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] gi|221532066|gb|EEE35063.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] Length = 167 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+ THP+ Sbjct: 86 SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 143 >gi|12831416|gb|AAK02074.1| site-specific recombinase IntIA [Vibrio metschnikovii] Length = 320 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGH+ +STTQIYT+V Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305 >gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] Length = 255 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 3/67 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++T HTLRHS+ATHLL+ G DLRS+Q +LGH+ +STTQIYT++ + + E+Y + Sbjct: 187 INTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTHIETDEL-EMYHKEF--F 243 Query: 61 TQKDKKN 67 T+K+K N Sbjct: 244 TEKEKTN 250 >gi|330826233|ref|YP_004389536.1| integron integrase [Alicycliphilus denitrificans K601] gi|329311605|gb|AEB86020.1| integron integrase [Alicycliphilus denitrificans K601] Length = 332 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATHLL G D+R++Q +LGH +STT IYT+V +K Sbjct: 275 PCTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320 >gi|89147596|gb|ABD62657.1| integrase [uncultured bacterium] gi|89147608|gb|ABD62663.1| integrase [uncultured bacterium] Length = 167 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 124 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166 >gi|88812879|ref|ZP_01128123.1| Integron integrase [Nitrococcus mobilis Nb-231] gi|88789801|gb|EAR20924.1| Integron integrase [Nitrococcus mobilis Nb-231] Length = 194 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HT RHSFATHLL G D+R+IQ +LGH ++TT IYT+V + Sbjct: 138 PASCHTFRHSFATHLLEAGYDIRTIQELLGHRDVNTTMIYTHVAN 182 >gi|330720867|gb|EGG99058.1| Integron integrase IntI2 [gamma proteobacterium IMCC2047] Length = 144 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 35/44 (79%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFAT LL G D+R++Q +LGH+ ++TT IYT+V +K Sbjct: 88 TCHTLRHSFATQLLEAGYDIRTVQELLGHANVATTMIYTHVLNK 131 >gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] Length = 305 Score = 97.6 bits (243), Expect = 5e-19, Method: Composition-based stats. Identities = 32/55 (58%), Positives = 38/55 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH+ RHSFA+HLL NG DLRSIQ +LGH LSTTQ YT + K + Y HP Sbjct: 248 SAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTKTSIKHLETAYVTAHP 302 >gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis Fe/C-56] gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 298 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T+IYT+V S ++E + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEIYTHVASDTLIENFLSHHPR 296 >gi|260774302|ref|ZP_05883217.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14] gi|260611263|gb|EEX36467.1| integron integrase IntI4 [Vibrio metschnikovii CIP 69.14] Length = 320 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGH+ +STTQIYT+V Sbjct: 263 SVSCHTLRHSFATHLLESGADIRTVQEQLGHADVSTTQIYTHV 305 >gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica] Length = 472 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 31/61 (50%), Positives = 40/61 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + E+++QTHP+ Q Sbjct: 392 CHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKEVHEQTHPAERQSK 451 Query: 65 K 65 + Sbjct: 452 Q 452 >gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism] Length = 318 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 276 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTMIYTHV 318 >gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 297 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 41/60 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+FATHLL+ G D+ S++ +LGHS L++TQ+YT+ + + I+ +HP K Sbjct: 238 SPHILRHTFATHLLNQGADMNSVKELLGHSSLASTQVYTHNSIAELKRIHGTSHPRNKTK 297 >gi|89147671|gb|ABD62694.1| integrase [uncultured bacterium] Length = 163 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLESGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|167969523|ref|ZP_02551800.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] Length = 352 Score = 97.3 bits (242), Expect = 6e-19, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 37/51 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS ATHLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++++ Sbjct: 145 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHER 195 >gi|26986514|gb|AAK02082.2| site-specific recombinase IntIA [Listonella pelagia] Length = 319 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|223369856|gb|ACM88797.1| integrase [uncultured bacterium] Length = 163 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|28371755|gb|AAO38263.1| tyrosine recombinase IntIA [Vibrio natriegens] Length = 320 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|89147644|gb|ABD62681.1| integrase [uncultured bacterium] Length = 163 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 120 PATPHTFRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|196230879|ref|ZP_03129740.1| integron integrase [Chthoniobacter flavus Ellin428] gi|196225220|gb|EDY19729.1| integron integrase [Chthoniobacter flavus Ellin428] Length = 353 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 25/46 (54%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATHLL G D+R++Q +LGH ++TT IYT+V ++ Sbjct: 297 PVTPHVLRHSFATHLLEKGQDIRTVQELLGHKDVATTMIYTHVLNR 342 >gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469] gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469] Length = 284 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT LL G D+R IQ LGHS ++TTQIYT+V+ + +YD+ Sbjct: 226 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDK 279 >gi|121595668|ref|YP_987564.1| integron integrase [Acidovorax sp. JS42] gi|120607748|gb|ABM43488.1| integron integrase [Acidovorax sp. JS42] Length = 332 Score = 97.3 bits (242), Expect = 7e-19, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFATH+L G D+R++Q +LGH +STT IYT+V +K Sbjct: 275 PCTPHVLRHSFATHMLQAGYDIRTVQELLGHKDVSTTMIYTHVLNK 320 >gi|289668108|ref|ZP_06489183.1| putative integrase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 285 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH+FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 221 PATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVTTTQIYTHV 263 >gi|149200531|ref|ZP_01877542.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149136380|gb|EDM24822.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 415 Score = 96.9 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 37/49 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATH+L +G D+R +Q +LGHS +STTQIYT+V + + Sbjct: 360 TVHTLRHSFATHILEDGYDIRVLQELLGHSDVSTTQIYTHVMGVHKLNV 408 >gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT LL G D+R IQ LGHS ++TTQIYT+V+ + +YD+ Sbjct: 221 EVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVATTQIYTHVDDALLKSVYDK 274 >gi|114331357|ref|YP_747579.1| integron integrase [Nitrosomonas eutropha C91] gi|114308371|gb|ABI59614.1| integron integrase [Nitrosomonas eutropha C91] Length = 329 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL G D+R++Q +LGHS ++TT IYT+V +K Sbjct: 272 PATPHTLRHSFATHLLQAGYDIRTVQELLGHSDVATTMIYTHVLNK 317 >gi|89147375|gb|ABD62548.1| integrase [uncultured bacterium] Length = 163 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147663|gb|ABD62690.1| integrase [uncultured bacterium] Length = 163 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147412|gb|ABD62566.1| integrase [uncultured bacterium] Length = 163 Score = 96.9 bits (241), Expect = 8e-19, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH+ L TT IYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHADLQTTMIYTHV 162 >gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] Length = 310 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 38/54 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++AT LL +G +L IQ++LGH LSTTQIYT+V+ +RM + + Sbjct: 256 PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVAK 309 >gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113] gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 38/54 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++AT LL +G +L IQ++LGH LSTTQIYT+V+ +RM + + Sbjct: 256 PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVAK 309 >gi|153839218|ref|ZP_01991885.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810] gi|308094780|ref|ZP_05892029.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034] gi|308095642|ref|ZP_05907294.2| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466] gi|308125806|ref|ZP_05777497.2| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030] gi|308126623|ref|ZP_05911350.2| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037] gi|149747246|gb|EDM58234.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ3810] gi|308086647|gb|EFO36342.1| site-specific recombinase IntIA [Vibrio parahaemolyticus Peru-466] gi|308093266|gb|EFO42961.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AN-5034] gi|308107453|gb|EFO44993.1| site-specific recombinase IntIA [Vibrio parahaemolyticus AQ4037] gi|308111500|gb|EFO49040.1| site-specific recombinase IntIA [Vibrio parahaemolyticus K5030] Length = 341 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 284 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 326 >gi|208972754|gb|ACI32876.1| IntI2 [Escherichia coli] Length = 325 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVLGQH 308 >gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae TW-183] gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183] gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN] Length = 299 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + ++E + HP Sbjct: 240 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHPR 297 >gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium HF0130_15N16] Length = 317 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRHS ATH+L G +R +Q +LGHS + +TQ+YT + IY + HP + Sbjct: 252 TPHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHPRAS 309 >gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] Length = 286 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 5/65 (7%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 HTLRH+FAT+LL G +LR IQ +LGHS L +TQIYT+V+ + E + + Sbjct: 225 VHPHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYTHVSPVMVKEAIE-----AMR 279 Query: 63 KDKKN 67 K+ KN Sbjct: 280 KEAKN 284 >gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86] gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHS+ATHLL +G DLR IQ +LGHS TT+IYT+V++K + +I Sbjct: 290 PVSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKNLQQI 340 >gi|223369862|gb|ACM88799.1| integrase [uncultured bacterium] Length = 163 Score = 96.9 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|227461207|gb|ACP39548.1| putative integron integrase [uncultured microorganism] Length = 307 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 265 PASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307 >gi|218514489|ref|ZP_03511329.1| site-specific tyrosine recombinase XerD [Rhizobium etli 8C-3] Length = 77 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 44/63 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+FA+HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q Sbjct: 13 ISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQ 72 Query: 63 KDK 65 K Sbjct: 73 AKK 75 >gi|108861476|gb|ABG21674.1| class 2 integrase [Providencia stuartii] gi|108861489|gb|ABG21686.1| class 2 integrase [Providencia stuartii] Length = 325 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHVLGQH 308 >gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae CWL029] gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae J138] gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae AR39] gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39] gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138] Length = 301 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + ++E + HP Sbjct: 242 PVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIEKFLAHHPR 299 >gi|89147390|gb|ABD62555.1| integrase [uncultured bacterium] Length = 163 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] Length = 342 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 37/60 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++ QTHP+ Sbjct: 251 PGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKAVHHQTHPAER 310 >gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] Length = 307 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 38/54 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHSFATHLL G +R IQ +LGH+ L++T +YT +N++ +ME Y Q Sbjct: 248 ITPHALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTKLNAESLMEKYRQF 301 >gi|227461191|gb|ACP39542.1| putative integron integrase [uncultured microorganism] Length = 307 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 265 PASCHTFRHSFATHLLENGYDIRTVQELLGHADVRTTMIYTHV 307 >gi|75763022|ref|ZP_00742813.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228967124|ref|ZP_04128160.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] gi|74489484|gb|EAO52909.1| Probable integrase/recombinase ripX [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792493|gb|EEM40059.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar sotto str. T04001] Length = 53 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 31/53 (58%), Positives = 42/53 (79%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +RHSFATHLL NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 1 MRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVSKTRLKDVYKQFHPRA 53 >gi|188989765|ref|YP_001901775.1| tyrosine recombinase [Xanthomonas campestris pv. campestris str. B100] gi|167731525|emb|CAP49700.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 327 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH+FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 265 PATCHTLRHAFATHLLEAGHDIRTVQELLGHKDVATTQIYTHV 307 >gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] Length = 374 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 34/51 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRHSFATHLL G D+R IQ +LGHS TT IYT+V + +I Sbjct: 316 KATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYTHVTQTSLKKI 366 >gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 306 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + I HP Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPR 301 >gi|223369830|gb|ACM88784.1| integrase [uncultured bacterium] Length = 163 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 312 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 M T H RHSFAT LL + D+R IQ +LGHS + TT+IYTNV++ + I HP Sbjct: 245 MHITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYTNVSTSKQNSILTAKHPRN 304 Query: 61 T 61 + Sbjct: 305 S 305 >gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16] gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16] Length = 359 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 41/53 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFATH+L + GDLR++Q +LGH+ +STTQ+YT ++ + + ++YD+ Sbjct: 278 VHPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTALDFQHLAKVYDK 330 >gi|124265889|ref|YP_001019893.1| phage integrase [Methylibium petroleiphilum PM1] gi|124258664|gb|ABM93658.1| phage integrase [Methylibium petroleiphilum PM1] Length = 338 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H LRHSFATH+L G D+R++Q +LGH+ + TT IYT+V ++ Sbjct: 281 PCSPHVLRHSFATHMLQAGYDIRTVQELLGHADVKTTMIYTHVLNR 326 >gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302] gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302] Length = 293 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ + S++ +LGH LSTT+IYT+ +++ Y HP Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHPRA 293 >gi|15866616|gb|AAL10406.1|AF416297_1 IntI3 integrase [Serratia marcescens] gi|801874|dbj|BAA08929.1| integrase [Serratia marcescens] gi|16902299|dbj|BAB71947.1| integrase [Serratia marcescens] Length = 346 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 283 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324 >gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 96.5 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RH+ AT LL NG D+R+IQ++LGHS LS T+IYT+V+ EI HP Sbjct: 247 VTPHMFRHTIATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHPR 303 >gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] Length = 292 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRHSFAT +L++ L S++ +LGH L+TT++YT+ +++ +IY HP Sbjct: 236 TPHVLRHSFATAMLNHKAGLESVRKLLGHESLATTEVYTHTTFEQLKQIYKSAHPR 291 >gi|114320950|ref|YP_742633.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1] gi|114227344|gb|ABI57143.1| integron integrase [Alkalilimnicola ehrlichii MLHE-1] Length = 462 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V SK Sbjct: 406 ASCHTLRHSFATHLLERGQDIRTVQELLGHADVSTTMIYTHVMSK 450 >gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14] gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14] Length = 293 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ L S++ +LGH+ LSTT+IYT+ +++ IY HP Sbjct: 237 SPHVLRHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTHTTFEQLKRIYSNAHPRA 293 >gi|89147448|gb|ABD62584.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 ISCHTLRHSFATHLLQRGQDIRTVQELLGHSDVSTTMIYTHV 162 >gi|300872289|gb|ADK38972.1| IntI4 [Vibrio sp. V90(2010)] Length = 290 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQELLGHTDVKTTQIYTHV 282 >gi|302035314|ref|YP_003799985.1| class 3 integrase Int3 [Escherichia coli] gi|28207197|gb|AAO32355.1| IntI3 integrase [Klebsiella pneumoniae] gi|262234436|gb|ACY39221.1| Int3 [Escherichia coli] Length = 346 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 283 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324 >gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] Length = 293 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+ +Y Q HP Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHPKA 293 >gi|223369864|gb|ACM88800.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|149774736|gb|ABR28408.1| integrase [Delftia tsuruhatensis] gi|151500312|gb|ABS12091.1| integrase [Delftia acidovorans] Length = 346 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 283 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 324 >gi|89147520|gb|ABD62620.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 VTPHVLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 293 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 36/57 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ + S++ +LGH LSTT+IYT+ +++ Y HP Sbjct: 237 SPHVLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTHTTFEQLKREYSIAHPRA 293 >gi|89147536|gb|ABD62628.1| integrase [uncultured bacterium] gi|89147547|gb|ABD62633.1| integrase [uncultured bacterium] gi|89147555|gb|ABD62637.1| integrase [uncultured bacterium] gi|89147594|gb|ABD62656.1| integrase [uncultured bacterium] gi|89147620|gb|ABD62669.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 120 PGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] Length = 293 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT LL NG DL +I+ +LGH+ L+ TQ+YT+ + +R+ +Y Q HP Sbjct: 237 SPHVLRHTFATALLDNGADLNAIKELLGHAGLAATQVYTHNSVERLKSVYKQAHPKA 293 >gi|315182768|gb|ADT89681.1| site-specific recombinase IntIA [Vibrio furnissii NCTC 11218] Length = 329 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 263 PLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|28898639|ref|NP_798244.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD 2210633] gi|28806857|dbj|BAC60128.1| site-specific recombinase IntIA [Vibrio parahaemolyticus RIMD 2210633] Length = 320 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss] gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum MopnTet14] gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum Nigg] Length = 315 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 41/57 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+ HP Sbjct: 254 TITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDEAHP 310 >gi|260770269|ref|ZP_05879202.1| integron integrase IntI4 [Vibrio furnissii CIP 102972] gi|260615607|gb|EEX40793.1| integron integrase IntI4 [Vibrio furnissii CIP 102972] Length = 329 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 263 PLSCHTLRHSFATHLLEAGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|254228151|ref|ZP_04921580.1| integron integrase subfamily [Vibrio sp. Ex25] gi|151939224|gb|EDN58053.1| integron integrase subfamily [Vibrio sp. Ex25] Length = 335 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 278 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 320 >gi|149198666|ref|ZP_01875710.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138381|gb|EDM26790.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 425 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 39/51 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S T HTLRHSFATH+L +G D+R++Q I+GH+ ++TTQIYT+V K + Sbjct: 358 SATVHTLRHSFATHVLEDGYDIRTLQEIMGHNDVNTTQIYTHVMGKHKSNV 408 >gi|223369822|gb|ACM88780.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 280 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 39/63 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRHSFATHLL++G + + +LGH ++TTQ+YT + S + M+ Y HP Sbjct: 217 LKVTPHQLRHSFATHLLNHGARIADVSELLGHETMATTQVYTKLGSVKKMQEYMSAHPLA 276 Query: 61 TQK 63 + Sbjct: 277 DKN 279 >gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366] gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366] Length = 294 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHS+AT LL+ G DL +I+ +LGH+ L+ TQ+YT+ + +R+ IY Q HP Sbjct: 238 SPHVLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHPKA 294 >gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] Length = 320 Score = 96.1 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 AVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 310 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++AT LL G +L IQ +LGH LSTTQIYT+V+ +RM + + Sbjct: 256 PVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTHVSEERMAGVVAK 309 >gi|89147414|gb|ABD62567.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STTQIYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTQIYTHV 162 >gi|76803916|gb|ABA55859.1| IntI [Vibrio sp. DAT722] Length = 320 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147496|gb|ABD62608.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASTHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147357|gb|ABD62539.1| integrase [uncultured bacterium] Length = 167 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 124 PGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 166 >gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] Length = 306 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + I HP Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPR 301 >gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC] gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila caviae GPIC] Length = 312 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 S T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + ++++HP Sbjct: 254 SITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHEESHP 310 >gi|332287662|ref|YP_004422563.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC] Length = 299 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHPR 296 >gi|223369860|gb|ACM88798.1| integrase [uncultured bacterium] Length = 163 Score = 96.1 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|241992549|gb|ACS73618.1| IntI1 [uncultured bacterium] Length = 330 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 288 PATPHTLRHSFATHLLQSGSDIRTVQELLGHADVATTMIYTHV 330 >gi|227461205|gb|ACP39547.1| putative integron integrase [uncultured microorganism] Length = 288 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 246 PASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 288 >gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 40/62 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|153831894|ref|ZP_01984561.1| IntI [Vibrio harveyi HY01] gi|148871892|gb|EDL70715.1| IntI [Vibrio harveyi HY01] Length = 320 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1] gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] Length = 299 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHPR 296 >gi|332295545|ref|YP_004437468.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 306 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 36/56 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHS ATHLLS G +++IQ ILGH +STTQIYT++ + + + Y + Sbjct: 237 LELHPHIFRHSLATHLLSGGASIKTIQEILGHESISTTQIYTHLIYEELKKEYFRA 292 >gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200] Length = 324 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 41/61 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG +LR +Q +LGH+ + TTQIYT+V+ ++ E+Y THPS + Sbjct: 256 CHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTHVSRAKLTEVYGSTHPSALSEQ 315 Query: 65 K 65 + Sbjct: 316 R 316 >gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis Fe/C-56] gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 312 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + ++++HP Sbjct: 254 NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310 >gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|332287266|ref|YP_004422167.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1] gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila psittaci 6BC] Length = 312 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 43/57 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + +D++HP Sbjct: 254 NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHDESHP 310 >gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] Length = 305 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|89147563|gb|ABD62641.1| integrase [uncultured bacterium] Length = 171 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 128 PASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170 >gi|332994570|gb|AEF04625.1| integrase [Alteromonas sp. SN2] Length = 322 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V + Sbjct: 263 KVTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVKTTQIYTHVLQQ 308 >gi|327542930|gb|EGF29382.1| Integron integrase [Rhodopirellula baltica WH47] Length = 446 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL G D+R++Q ++GH+ +STT IY +V ++ Sbjct: 384 PHTLRHSFATHLLEGGSDIRTVQELMGHADVSTTMIYLHVMNR 426 >gi|269962907|ref|ZP_06177246.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] gi|269832352|gb|EEZ86472.1| site-specific recombinase IntI [Vibrio harveyi 1DA3] Length = 320 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 SVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|227461203|gb|ACP39546.1| putative integron integrase [uncultured microorganism] Length = 310 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTL HSFATHLL +G D+R++Q +LGH+ +STT IYT+V Sbjct: 268 PVSPHTLHHSFATHLLESGADIRTVQELLGHANVSTTMIYTHV 310 >gi|94442304|dbj|BAE93651.1| integron integrase [uncultured bacterium] Length = 238 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 196 VTPHVFRHSFATHLLEAGYDIRTVQELLGHKDVRTTMIYTHV 237 >gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++ QTHP+ ++ Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRT 327 Query: 65 KK 66 K Sbjct: 328 AK 329 >gi|254225618|ref|ZP_04919226.1| site-specific recombinase IntI4 [Vibrio cholerae V51] gi|125621833|gb|EAZ50159.1| site-specific recombinase IntI4 [Vibrio cholerae V51] Length = 320 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|9971650|dbj|BAB12601.1| intI2 [Escherichia coli] gi|50262989|gb|AAT72891.1| IntI2 [Shigella sonnei] gi|296881202|gb|ADH82143.1| IntI2 [Klebsiella pneumoniae] gi|296881208|gb|ADH82148.1| IntI2 [Klebsiella pneumoniae] gi|296881214|gb|ADH82153.1| IntI2 [Escherichia coli] Length = 325 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQH 308 >gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 344 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 42/64 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ K + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREA 335 Query: 64 DKKN 67 D ++ Sbjct: 336 DSEH 339 >gi|332666489|ref|YP_004449277.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] gi|332335303|gb|AEE52404.1| Tyrosine recombinase xerC [Haliscomenobacter hydrossis DSM 1100] Length = 297 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 41/56 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H LRHSFATHL +G +L +I+ +LGHS L+ TQIYT+ + +R+ +IY Q HP Sbjct: 238 SPHVLRHSFATHLSDHGANLNAIKELLGHSSLAATQIYTHHSIERLKKIYQQAHPK 293 >gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 293 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT LL+ G DL +I+ +LGH+ L TQ+YT+ + +R+ IY Q HP Sbjct: 237 SPHVLRHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLKSIYKQAHPKA 293 >gi|227461225|gb|ACP39553.1| putative integron integrase [uncultured microorganism] Length = 266 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 224 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 266 >gi|23452624|gb|AAN33109.1| VvuIntIA [Vibrio vulnificus] Length = 320 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis URRWXCal2] gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2] Length = 305 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2] gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 305 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 34/52 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H LRH+FAT LL NG D+R ++ +LGH+ + TT IYT+VN + E Sbjct: 245 KLSCHKLRHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEAM 296 >gi|89147673|gb|ABD62695.1| integrase [uncultured bacterium] Length = 166 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 124 ASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 165 >gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 95.7 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|89147665|gb|ABD62691.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PATCHSLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147538|gb|ABD62629.1| integrase [uncultured bacterium] Length = 171 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 128 PASCHTFRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 170 >gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 313 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N + ++ P T+ Sbjct: 241 TPHMLRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTHINHASSAQPV-RSEPRATE 298 >gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 343 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 42/55 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHS+ATHLL+ G D+ +++ +LGH LS+TQ+YT + + ++++Y+QTHP Sbjct: 287 PHALRHSYATHLLNAGVDINTVKELLGHESLSSTQVYTTSSFEELIKVYNQTHPK 341 >gi|89147488|gb|ABD62604.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G D+R++Q +LGHS + TT+IYT+V Sbjct: 120 KVSCHVLRHSFATHLLESGRDIRTVQELLGHSDVKTTEIYTHV 162 >gi|89147452|gb|ABD62586.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162 >gi|89147474|gb|ABD62597.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL G D+R+IQ +LGH +STT IYT+V Sbjct: 120 NVSCHTFRHSFATHLLEAGRDIRTIQELLGHKDVSTTMIYTHV 162 >gi|89147424|gb|ABD62572.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDNGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 379 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/50 (58%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHLL G DLR IQS+LGH+ +TT+IYT+V +I Sbjct: 322 VTPHMLRHSFATHLLEAGTDLRYIQSLLGHNNSNTTEIYTHVAVNAFKKI 371 >gi|149191778|ref|ZP_01870016.1| site-specific recombinase IntI4 [Vibrio shilonii AK1] gi|148834358|gb|EDL51357.1| site-specific recombinase IntI4 [Vibrio shilonii AK1] Length = 321 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL +G D+R++Q LGH+ L TTQ+YT+V ++ Sbjct: 264 VSCHTLRHSFATHLLESGADIRTVQEQLGHTDLKTTQVYTHVINR 308 >gi|319412013|emb|CBY91946.1| hypothetical protein [Streptococcus pneumoniae] Length = 298 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|12831419|gb|AAK02076.1| site-specific recombinase IntIA [Vibrio parahaemolyticus] Length = 320 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402] Length = 267 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++ K + +++ Sbjct: 201 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSLQMYHNKF 256 >gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 95.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 37/54 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++AT LL G +L IQ++LGH LSTTQIYT+V+ +RM + + Sbjct: 256 PVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVAK 309 >gi|262393940|ref|YP_003285794.1| integron integrase IntI4 [Vibrio sp. Ex25] gi|262337534|gb|ACY51329.1| integron integrase IntI4 [Vibrio sp. Ex25] Length = 320 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|30250123|ref|NP_842193.1| integron integrase [Nitrosomonas europaea ATCC 19718] gi|30139230|emb|CAD86100.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 323 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R+IQ +LGH + TT IYT+V +K Sbjct: 268 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 312 >gi|87302036|ref|ZP_01084870.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] gi|87283604|gb|EAQ75559.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Synechococcus sp. WH 5701] Length = 323 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HT RHSFATHLL G D+R+IQ +LGHS + TT IYT+V ++ Sbjct: 267 ASCHTFRHSFATHLLERGHDIRTIQELLGHSDVKTTMIYTHVLNR 311 >gi|328474785|gb|EGF45590.1| site-specific recombinase IntIA [Vibrio parahaemolyticus 10329] Length = 320 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ + Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKGRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|262403450|ref|ZP_06080008.1| integron integrase IntI4 [Vibrio sp. RC586] gi|262349954|gb|EEY99089.1| integron integrase IntI4 [Vibrio sp. RC586] Length = 320 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|332522659|ref|ZP_08398911.1| phage integrase, N-terminal SAM domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332313923|gb|EGJ26908.1| phage integrase, N-terminal SAM domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 295 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 38/60 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P + Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSKQKEILTSCNPIAS 292 >gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] Length = 294 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLLS+G +LR++Q +LGH L T+ YT++ ++ + HP Sbjct: 233 PLHPHALRHSFATHLLSSGANLRTLQELLGHESLQATEKYTHLGIDQLARTMENLHPLGK 292 Query: 62 QK 63 K Sbjct: 293 GK 294 >gi|21229822|ref|NP_635739.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766698|ref|YP_241460.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|12746334|gb|AAK07444.1|AF324483_1 site-specific recombinase IntIA [Xanthomonas campestris pv. campestris] gi|21111319|gb|AAM39663.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572030|gb|AAY47440.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] Length = 327 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH L G D+R++Q +LGH ++TTQIYT+V Sbjct: 265 PATCHTLRHSFATHPLEAGHDIRTVQELLGHKDVATTQIYTHV 307 >gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus S26/3] gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3] Length = 299 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 42/57 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHLL N DLR IQ +LGH+R+++T++YT+V + +ME + HP Sbjct: 240 VSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADTLMENFLSYHPR 296 >gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246] gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246] Length = 305 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTNAYP 302 >gi|77360404|ref|YP_339979.1| integrase [Pseudoalteromonas haloplanktis TAC125] gi|76875315|emb|CAI86536.1| putative integrase [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V + Sbjct: 252 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 296 >gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] Length = 292 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 36/57 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RH AT LL +G DLRSIQ +LGH+ + TTQIYTNV + M + ++ HP Sbjct: 227 PVNPHRFRHGCATALLESGADLRSIQMLLGHASIQTTQIYTNVTTNTMTKTIEEHHP 283 >gi|300872279|gb|ADK38967.1| IntI4 [Vibrio sp. V49(2010)] Length = 297 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 38/57 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V + I +P Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRWCSSIIKPIYP 296 >gi|261212788|ref|ZP_05927072.1| integron integrase IntI4 [Vibrio sp. RC341] gi|260837853|gb|EEX64530.1| integron integrase IntI4 [Vibrio sp. RC341] Length = 320 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 290 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 28/50 (56%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL G D+R IQ +LGH++L TT IYT V K + ++ Sbjct: 226 VSPHTLRHSFATHLLEGGTDIRVIQVLLGHAKLETTTIYTKVAIKTIRDV 275 >gi|89147377|gb|ABD62549.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFATHLL NG D+R++Q +LGHS +STT IYT+V Sbjct: 120 PASCHSLRHSFATHLLENGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|269967891|ref|ZP_06181932.1| site-specific recombinase IntI [Vibrio alginolyticus 40B] gi|269827489|gb|EEZ81782.1| site-specific recombinase IntI [Vibrio alginolyticus 40B] Length = 320 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147371|gb|ABD62546.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 VTCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHV 162 >gi|310695289|gb|ADP05693.1| putative integrase [uncultured microorganism] Length = 319 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R+IQ +LGHS +STT IYT+V Sbjct: 277 PATCHTLRHSFATHLLESGSDIRTIQGLLGHSDVSTTMIYTHV 319 >gi|223369816|gb|ACM88777.1| integrase [uncultured bacterium] Length = 163 Score = 95.3 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 VSCHTLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|254513217|ref|ZP_05125282.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] gi|221532221|gb|EEE35217.1| tyrosine recombinase [Rhodobacteraceae bacterium KLH11] Length = 146 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/58 (50%), Positives = 42/58 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 S + H RHS AT +L NG D+R IQ +LGH++L TTQIYT V+ +++ +I+ THP+ Sbjct: 65 SGSCHLFRHSCATLMLENGADIRYIQQLLGHAKLDTTQIYTQVSIRQLKQIHTLTHPA 122 >gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96] gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 356 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 40/62 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|94442308|dbj|BAE93653.1| integron integrase [uncultured bacterium] Length = 238 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V Sbjct: 196 VTCHTFRHSFATHLLESGSDIRTIQELLGHADVRTTMIYTHV 237 >gi|220935866|ref|YP_002514765.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7] gi|219997176|gb|ACL73778.1| integron integrase [Thioalkalivibrio sp. HL-EbGR7] Length = 323 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 38/46 (82%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 ++HTLRHSFATHLL +G D+R++Q +LGHS + TTQIYT+V ++ Sbjct: 266 PASSHTLRHSFATHLLEDGYDIRTVQELLGHSDVRTTQIYTHVLNR 311 >gi|89147502|gb|ABD62611.1| integrase [uncultured bacterium] Length = 163 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 120 KVSCHTLRHSFATHLLEAGSDIRTVQELLGHADVSTTMIYTHV 162 >gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688] gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688] Length = 298 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 42/56 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHSFA+H+L + GDLR++Q +LGH+ +STTQ+YT+++ + ++YD T Sbjct: 230 IRVHPHMLRHSFASHVLQSSGDLRAVQEMLGHANISTTQVYTHLDFHHLAKVYDST 285 >gi|30908730|gb|AAP37597.1| IntI [uncultured bacterium] Length = 161 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 120 VSCHTLRHSFATHLLEGGYDIRTVQELLGHSDVSTTMIYTHV 161 >gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5] gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5] Length = 305 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 359 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 30/62 (48%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++ QTHP+ ++ Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQSVHAQTHPAEKRRT 327 Query: 65 KK 66 K Sbjct: 328 AK 329 >gi|258623268|ref|ZP_05718275.1| site-specific recombinase IntI [Vibrio mimicus VM573] gi|258584454|gb|EEW09196.1| site-specific recombinase IntI [Vibrio mimicus VM573] Length = 320 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V ++ Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308 >gi|12642607|gb|AAK00307.1|AF314191_1 integrase IntI6 [uncultured bacterium PG2] Length = 305 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 263 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 305 >gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707] Length = 310 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 38/54 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++AT LL +G +L IQ++LGH LSTTQIYT+V+ +RM I + Sbjct: 256 PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGIVAK 309 >gi|255020691|ref|ZP_05292753.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756] gi|254969927|gb|EET27427.1| Tyrosine recombinase xerC [Acidithiobacillus caldus ATCC 51756] Length = 317 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 42/64 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 HTLRHS A+HLL + GDLR++Q LGH+ ++TT IYT+++ + + +YD HP + Sbjct: 248 HPHTLRHSAASHLLQSSGDLRAVQDFLGHAGIATTAIYTHLDHQHLAAVYDSAHPRAHRA 307 Query: 64 DKKN 67 + Sbjct: 308 PPRQ 311 >gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591] gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591] Length = 369 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 42/63 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + + ++ THP+ Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPAERDP 336 Query: 64 DKK 66 +++ Sbjct: 337 EEE 339 >gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 308 Score = 94.9 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RH+FAT LL D+R IQ++LGHS ++ T+IYT+V + +I HP Sbjct: 245 ITPHMFRHTFATQLLEENVDIRYIQTMLGHSSINVTEIYTHVTISKQKDILASKHPR 301 >gi|309791377|ref|ZP_07685887.1| integron integrase [Oscillochloris trichoides DG6] gi|308226584|gb|EFO80302.1| integron integrase [Oscillochloris trichoides DG6] Length = 321 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HT RHSFATHL+ NG D+R++Q +LGHS + TT IYT+V ++ Sbjct: 266 ASCHTFRHSFATHLIENGYDIRTVQELLGHSDVKTTMIYTHVLNR 310 >gi|89147494|gb|ABD62607.1| integrase [uncultured bacterium] Length = 163 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATH L NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASTHTLRHSFATHFLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|194396828|ref|YP_002037966.1| integrase [Streptococcus pneumoniae G54] gi|307127259|ref|YP_003879290.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] gi|194356495|gb|ACF54943.1| integrase [Streptococcus pneumoniae G54] gi|295980935|emb|CBJ57183.1| hypothetical protein [Streptococcus pneumoniae] gi|306484321|gb|ADM91190.1| tyrosine recombinase [Streptococcus pneumoniae 670-6B] Length = 298 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|13509250|emb|CAC35342.1| integrase [Vibrio salmonicida] Length = 320 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V + Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDIRTTQIYTHVLQQ 308 >gi|91204063|emb|CAJ71716.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 433 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 33/46 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + + HTLRHSFATHLL NG ++R +Q +LGH L TT IYT+V Sbjct: 370 NASVHTLRHSFATHLLMNGVNIREVQDLLGHKNLETTMIYTHVMRD 415 >gi|91200146|emb|CAJ73190.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 357 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R+IQ +LGH + TT IYT+V Sbjct: 276 ASCHTFRHSFATHLLESGYDIRTIQELLGHKDVKTTMIYTHV 317 >gi|89147406|gb|ABD62563.1| integrase [uncultured bacterium] Length = 163 Score = 94.9 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 36/42 (85%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ +LGH+ +STTQIYT+V Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVSTTQIYTHV 162 >gi|262164337|ref|ZP_06032075.1| integron integrase IntI4 [Vibrio mimicus VM223] gi|262026717|gb|EEY45384.1| integron integrase IntI4 [Vibrio mimicus VM223] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V ++ Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLNR 308 >gi|320156126|ref|YP_004188505.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|326424001|ref|NP_761248.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] gi|319931438|gb|ADV86302.1| integron integrase IntI4 [Vibrio vulnificus MO6-24/O] gi|319999378|gb|AAO10775.2| Integron integrase IntI4 [Vibrio vulnificus CMCP6] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|78224199|ref|YP_385946.1| integron integrase [Geobacter metallireducens GS-15] gi|78195454|gb|ABB33221.1| Integron integrase [Geobacter metallireducens GS-15] Length = 334 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V ++ Sbjct: 277 PATPHTLRHSFATHLLQSGYDIRTVQELLGHKDVQTTMIYTHVLNR 322 >gi|37680125|ref|NP_934734.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] gi|37198871|dbj|BAC94705.1| super-integron integrase IntIA [Vibrio vulnificus YJ016] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 263 SISCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHV 305 >gi|42527350|ref|NP_972448.1| DNA integrase [Treponema denticola ATCC 35405] gi|41817935|gb|AAS12359.1| DNA integrase [Treponema denticola ATCC 35405] Length = 335 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 25/46 (54%), Positives = 33/46 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL G D+R+IQ +LGHS + TT +YT+V ++ Sbjct: 278 PIGCHTFRHSFATHLLEAGYDIRTIQELLGHSDVKTTMVYTHVLNR 323 >gi|11345545|gb|AAD55407.2|AF180939_1 site-specific recombinase IntI [Vibrio mimicus] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147685|gb|ABD62701.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HTLRHSFATHLL +G D+RS+Q +LGH L TTQIYT+V Sbjct: 120 SVSCHTLRHSFATHLLESGADIRSVQELLGHESLETTQIYTHV 162 >gi|223369780|gb|ACM88760.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|99031762|pdb|2A3V|A Chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031763|pdb|2A3V|B Chain B, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031764|pdb|2A3V|C Chain C, Structural Basis For Broad Dna-Specificity In Integron Recombination gi|99031765|pdb|2A3V|D Chain D, Structural Basis For Broad Dna-Specificity In Integron Recombination Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147606|gb|ABD62662.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+ RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHSFRHSFATHLLEAGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] Length = 305 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL G +LRSIQ +LGH LSTTQ YT + KR+ +Y +P Sbjct: 248 TAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTKTSIKRLEAVYTTAYP 302 >gi|300872269|gb|ADK38962.1| IntI4 [Vibrio sp. V2(2010)] Length = 293 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|88857306|ref|ZP_01131949.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88859550|ref|ZP_01134190.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88818567|gb|EAR28382.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] gi|88820503|gb|EAR30315.1| site-specific recombinase IntI4 [Pseudoalteromonas tunicata D2] Length = 323 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V + Sbjct: 266 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVLKQ 310 >gi|189425632|ref|YP_001952809.1| integrase [Geobacter lovleyi SZ] gi|189421891|gb|ACD96289.1| integron integrase [Geobacter lovleyi SZ] Length = 453 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 32/41 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+HT RHSFATHLL G D+R IQ++LGHS L TT IYT+ Sbjct: 397 VTSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTH 437 >gi|258625491|ref|ZP_05720383.1| site-specific recombinase IntI [Vibrio mimicus VM603] gi|258582197|gb|EEW07054.1| site-specific recombinase IntI [Vibrio mimicus VM603] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|255012874|ref|ZP_05285000.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 69 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHSFATHLL G +LR+IQ +LGH +++TT+IYT+++ + + + + HP Sbjct: 7 NVSPHTFRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTHIDREFLRKEILEHHPRSR 66 Query: 62 QK 63 + Sbjct: 67 PR 68 >gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] Length = 305 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|89147486|gb|ABD62603.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH L TT IYT+V Sbjct: 121 VTCHTLRHSFATHLLESGYDIRTVQELLGHKDLRTTMIYTHV 162 >gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str. Malish 7] gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 305 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] Length = 376 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337 Query: 65 KK 66 +K Sbjct: 338 EK 339 >gi|254785433|ref|YP_003072862.1| integron integrase [Teredinibacter turnerae T7901] gi|237684485|gb|ACR11749.1| integron integrase [Teredinibacter turnerae T7901] Length = 322 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + +AHTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT+V Sbjct: 264 TVSAHTLRHSFATHLLQSGTDIRTVQEQLGHADLRTTQIYTHV 306 >gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] Length = 274 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T HTLRHS+ATHLL+ G DLRS+Q +LGHS +STTQ+YT++ K + +++ Sbjct: 208 IETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDISTTQVYTHIEDKSLQMYHNKF 263 >gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337 Query: 65 KK 66 +K Sbjct: 338 EK 339 >gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337 Query: 65 KK 66 +K Sbjct: 338 EK 339 >gi|229522964|ref|ZP_04412378.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80] gi|229340181|gb|EEO05189.1| integron integrase IntI4 [Vibrio cholerae TM 11079-80] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|153829038|ref|ZP_01981705.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39] gi|229526098|ref|ZP_04415502.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426] gi|148875467|gb|EDL73602.1| site-specific recombinase IntI4 [Vibrio cholerae 623-39] gi|229336256|gb|EEO01274.1| integron integrase IntI4 [Vibrio cholerae bv. albensis VL426] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str. McKiel] gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 305 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRSIQ +LGH LSTTQ YT + K ++ +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTKTSIKHLVSVYTSAYP 302 >gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] Length = 344 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + + HTLRHSFATHLL G D+R +Q +LGH+ ++TTQ+Y Sbjct: 274 AVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQVYA 314 >gi|89147570|gb|ABD62644.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|15601056|ref|NP_232687.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121730170|ref|ZP_01682564.1| site-specific recombinase IntI4 [Vibrio cholerae V52] gi|147671698|ref|YP_001215774.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|153803265|ref|ZP_01957851.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3] gi|153817564|ref|ZP_01970231.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457] gi|153824064|ref|ZP_01976731.1| site-specific recombinase IntI4 [Vibrio cholerae B33] gi|227811914|ref|YP_002811924.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2] gi|229506555|ref|ZP_04396064.1| integron integrase IntI4 [Vibrio cholerae BX 330286] gi|229510649|ref|ZP_04400129.1| integron integrase IntI4 [Vibrio cholerae B33] gi|229514763|ref|ZP_04404224.1| integron integrase IntI4 [Vibrio cholerae TMA 21] gi|229517220|ref|ZP_04406665.1| integron integrase IntI4 [Vibrio cholerae RC9] gi|229606034|ref|YP_002876738.1| integron integrase IntI4 [Vibrio cholerae MJ-1236] gi|254850510|ref|ZP_05239860.1| site-specific recombinase IntIA [Vibrio cholerae MO10] gi|255745910|ref|ZP_05419857.1| integron integrase IntI4 [Vibrio cholera CIRS 101] gi|262163533|ref|ZP_06031279.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1] gi|262168208|ref|ZP_06035906.1| integron integrase IntI4 [Vibrio cholerae RC27] gi|297579606|ref|ZP_06941533.1| site-specific recombinase IntI4 [Vibrio cholerae RC385] gi|298500137|ref|ZP_07009943.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757] gi|5825613|gb|AAD53319.1|AF179591_1 site-specific recombinase IntI4 [Vibrio cholerae] gi|3095165|gb|AAC38424.1| site-specific recombinase IntIA [Vibrio cholerae] gi|9657688|gb|AAF96199.1| site-specific recombinase IntI4 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121628089|gb|EAX60629.1| site-specific recombinase IntI4 [Vibrio cholerae V52] gi|124121205|gb|EAY39948.1| site-specific recombinase IntI4 [Vibrio cholerae MZO-3] gi|126511989|gb|EAZ74583.1| site-specific recombinase IntI4 [Vibrio cholerae NCTC 8457] gi|126518414|gb|EAZ75637.1| site-specific recombinase IntI4 [Vibrio cholerae B33] gi|146314081|gb|ABQ18621.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|227011056|gb|ACP07267.1| site-specific recombinase IntI4 [Vibrio cholerae M66-2] gi|227014959|gb|ACP11168.1| site-specific recombinase IntI4 [Vibrio cholerae O395] gi|229345256|gb|EEO10229.1| integron integrase IntI4 [Vibrio cholerae RC9] gi|229348743|gb|EEO13701.1| integron integrase IntI4 [Vibrio cholerae TMA 21] gi|229353094|gb|EEO18034.1| integron integrase IntI4 [Vibrio cholerae B33] gi|229356906|gb|EEO21824.1| integron integrase IntI4 [Vibrio cholerae BX 330286] gi|229372520|gb|ACQ62942.1| integron integrase IntI4 [Vibrio cholerae MJ-1236] gi|254846215|gb|EET24629.1| site-specific recombinase IntIA [Vibrio cholerae MO10] gi|255735664|gb|EET91062.1| integron integrase IntI4 [Vibrio cholera CIRS 101] gi|262023451|gb|EEY42154.1| integron integrase IntI4 [Vibrio cholerae RC27] gi|262028100|gb|EEY46759.1| integron integrase IntI4 [Vibrio cholerae INDRE 91/1] gi|297535252|gb|EFH74086.1| site-specific recombinase IntI4 [Vibrio cholerae RC385] gi|297542118|gb|EFH78169.1| site-specific recombinase IntIA [Vibrio cholerae MAK 757] gi|327485489|gb|AEA79895.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4] gi|327485494|gb|AEA79900.1| Integron integrase IntI4 [Vibrio cholerae LMA3894-4] Length = 320 Score = 94.6 bits (235), Expect = 4e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|89147361|gb|ABD62541.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATH+L +G D+R++Q +LGHS + TTQIYT+V Sbjct: 121 VSCHTFRHSFATHMLESGYDIRTVQELLGHSSVQTTQIYTHV 162 >gi|227461200|gb|ACP39545.1| putative integron integrase [uncultured microorganism] Length = 308 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 266 PASCHTFRHSFATHLLDSGYDIRTVQELLGHSNVKTTMIYTHV 308 >gi|89147634|gb|ABD62676.1| integrase [uncultured bacterium] Length = 163 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFAT LL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] Length = 257 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RHS AT LL NG D+R +Q ILGH+ ++TT++YT+V ++ IY+ Sbjct: 198 NVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTHVEKSKLKIIYNN 251 >gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 94.6 bits (235), Expect = 5e-18, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 39/58 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++++THP+ + Sbjct: 268 CHVFRHSMATQMLENGADTRYIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPAERK 325 >gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 350 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 5/68 (7%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS----- 59 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + ++++QTHP+ Sbjct: 268 CHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAISHLQKVHEQTHPAERKQT 327 Query: 60 ITQKDKKN 67 +K K++ Sbjct: 328 ARRKKKRD 335 >gi|149198037|ref|ZP_01875085.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138949|gb|EDM27354.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 419 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 38/50 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATH+L +G D+R++Q ++GH+ ++TTQIYT+V K + Sbjct: 357 ATIHTLRHSFATHVLEDGYDIRTLQELMGHNDVNTTQIYTHVMGKHKSNV 406 >gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] Length = 306 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + +I HP Sbjct: 243 LHITPHMFRHTFATCLLEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILTTKHPR 301 >gi|227461214|gb|ACP39551.1| putative integron integrase [uncultured microorganism] Length = 294 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 252 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 294 >gi|89147541|gb|ABD62630.1| integrase [uncultured bacterium] Length = 163 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147464|gb|ABD62592.1| integrase [uncultured bacterium] Length = 163 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL +G D+R++Q +LGH + TT+IYT+V Sbjct: 121 VTCHVLRHSFATHLLEDGRDIRTVQELLGHGDVKTTEIYTHV 162 >gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + +I HP Sbjct: 245 ITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVTVSKQRDILVTKHPR 301 >gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057] gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056] gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057] Length = 344 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 7/59 (11%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V ++ R+ ++ Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAASNGRLRKVL 331 >gi|254446471|ref|ZP_05059947.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235] gi|198260779|gb|EDY85087.1| integron integrase subfamily [Verrucomicrobiae bacterium DG1235] Length = 422 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 31/41 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 TAHT RHSFA+HLL D+R+IQ +LGHS L TT IYT+ Sbjct: 366 VTAHTFRHSFASHLLEANYDIRTIQELLGHSSLETTMIYTH 406 >gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] Length = 284 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 29/47 (61%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL NG DLR IQ +LGH TT IYT+V+++ + I Sbjct: 231 HTLRHSFATHLLENGTDLRYIQQLLGHQSPKTTMIYTHVSTRSLQNI 277 >gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511] gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511] Length = 284 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFATHLL +G + + +LGH+ ++TTQIYT + S R + Y + HP Sbjct: 212 IKATPHQLRHSFATHLLDHGARISDVSELLGHASMATTQIYTQLGSSRKLREYMKAHP 269 >gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 345 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335 Query: 64 DK 65 D+ Sbjct: 336 DE 337 >gi|301299655|ref|ZP_07205912.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852749|gb|EFK80376.1| conserved hypothetical protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 75 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RH+FAT LL +G D+R IQ ILGHS ++ TQIYT+V+ + EI +P Sbjct: 13 IKITPHMFRHTFATMLLESGVDIRYIQQILGHSSIAVTQIYTHVSMDKQREILTNLNP 70 >gi|227461227|gb|ACP39554.1| putative integron integrase [uncultured microorganism] Length = 347 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS + TT IYT+V Sbjct: 306 VTCHTLRHSFATHLLEQGQDIRTVQELLGHSDVRTTMIYTHV 347 >gi|89147456|gb|ABD62588.1| integrase [uncultured bacterium] Length = 164 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH LRHS+ATHLL G DLR+IQ LGHS + TT+IYT+V Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163 >gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 370 Score = 94.2 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337 Query: 65 KK 66 +K Sbjct: 338 EK 339 >gi|332532602|ref|ZP_08408479.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] gi|332038023|gb|EGI74471.1| integron integrase IntI4 [Pseudoalteromonas haloplanktis ANT/505] Length = 320 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQIYT+V + Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQTQLGHSDVRTTQIYTHVLQQ 308 >gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+FAT LL D+R IQ +LGHS ++ T+IYT+V + + +I HP Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTHVTTAKQRDILISKHPR 301 >gi|88813691|ref|ZP_01128918.1| Integron integrase [Nitrococcus mobilis Nb-231] gi|88789045|gb|EAR20185.1| Integron integrase [Nitrococcus mobilis Nb-231] Length = 320 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 32/45 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HT RHSFATHLL G +R+IQ +LGH ++TT IYT+V + Sbjct: 264 PASCHTFRHSFATHLLEAGYGIRTIQELLGHRDVNTTMIYTHVAN 308 >gi|89147410|gb|ABD62565.1| integrase [uncultured bacterium] Length = 167 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH ++TT IYT+V Sbjct: 125 ATCHTLRHSFATHLLENGYDIRTVQELLGHREVATTMIYTHV 166 >gi|294056434|ref|YP_003550092.1| integron integrase [Coraliomargarita akajimensis DSM 45221] gi|293615767|gb|ADE55922.1| integron integrase [Coraliomargarita akajimensis DSM 45221] Length = 443 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+HTLRHSFATHLL +G D+R++Q +LGH ++ TTQ+Y +V K Sbjct: 387 ITSHTLRHSFATHLLEDGVDIRTVQDLLGHQQVETTQVYLHVMQK 431 >gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|89147365|gb|ABD62543.1| integrase [uncultured bacterium] Length = 163 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTLRHSFATHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337 Query: 65 KK 66 +K Sbjct: 338 EK 339 >gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] Length = 292 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPSI 60 TLRHSFA HLL NG D++S+Q +LGH LS TQIY++V + ++ ++Y ++HP Sbjct: 238 TLRHSFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNKIAQVYKKSHPRA 292 >gi|300872287|gb|ADK38971.1| IntI4 [Vibrio sp. V89(2010)] Length = 297 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATH L G D+R++Q +LGH+ + TTQIYT+V Sbjct: 247 TVTCHTLRHSFATHSLEVGADIRTVQELLGHTDVKTTQIYTHV 289 >gi|12642602|gb|AAK00304.1|AF314189_1 integrase IntI8 [uncultured bacterium BAL3] Length = 316 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFATHLL G D R++Q +LGHS +STT IYT+V Sbjct: 274 PVHCHTFRHSFATHLLQAGYDTRTVQELLGHSDVSTTMIYTHV 316 >gi|84468558|dbj|BAE71364.1| hypothetical protein [Vibrio cholerae O139] gi|84468563|dbj|BAE71368.1| hypothetical protein [Vibrio cholerae O139] gi|84468567|dbj|BAE71371.1| hypothetical protein [Vibrio cholerae O139] Length = 183 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 127 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 169 >gi|330504266|ref|YP_004381135.1| integron integrase [Pseudomonas mendocina NK-01] gi|328918552|gb|AEB59383.1| integron integrase [Pseudomonas mendocina NK-01] Length = 321 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRHSFATHLL G D+R++Q +LGHS + TT IYT+V ++ Sbjct: 266 ATPHSLRHSFATHLLEAGQDIRTVQELLGHSDVKTTMIYTHVLNR 310 >gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] Length = 293 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++ L S++ +LGH+RLSTT+IYT+ +++ +Y HP Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHPRA 293 >gi|209526214|ref|ZP_03274744.1| integron integrase [Arthrospira maxima CS-328] gi|209493311|gb|EDZ93636.1| integron integrase [Arthrospira maxima CS-328] Length = 277 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 25/44 (56%), Positives = 36/44 (81%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL +G D+R++Q +LGH + TT+IYT+V ++ Sbjct: 220 SCHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTRIYTHVLNR 263 >gi|30248467|ref|NP_840537.1| Phage integrase [Nitrosomonas europaea ATCC 19718] gi|30138353|emb|CAD84361.1| Phage integrase [Nitrosomonas europaea ATCC 19718] Length = 292 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R+IQ +LGH + TT IYT+V +K Sbjct: 237 ATPHTLRHSFATHLLDSGYDIRTIQELLGHKDVHTTMIYTHVLNK 281 >gi|91218504|ref|ZP_01255443.1| probable integrase [Psychroflexus torquis ATCC 700755] gi|91183335|gb|EAS69739.1| probable integrase [Psychroflexus torquis ATCC 700755] Length = 137 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 33/52 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V + I Sbjct: 81 IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVATNTFKSI 132 >gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 309 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 38/56 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H RH+FAT LL D+R IQ ILGHS ++TTQIYT+++S + EI Q +P Sbjct: 248 TPHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQKNPR 303 >gi|89147628|gb|ABD62673.1| integrase [uncultured bacterium] Length = 163 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 AASCHTFRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|88799619|ref|ZP_01115195.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp. MED297] gi|88777704|gb|EAR08903.1| integrase/recombinase (XerC/CodV family) protein [Reinekea sp. MED297] Length = 332 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFAT LL G D+R+IQ ILGHS + TTQIYT+V Sbjct: 277 VSCHTFRHSFATELLRQGTDIRNIQEILGHSSVETTQIYTHV 318 >gi|325474369|gb|EGC77557.1| DNA integrase [Treponema denticola F0402] Length = 426 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 32/46 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL D+R+IQ +LGHS + TT +YT+V ++ Sbjct: 369 PIGCHTFRHSFATHLLEASYDIRTIQELLGHSDVKTTMVYTHVLNR 414 >gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 297 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+ A+HLL G DLR++Q LGH + TT+ Y + + + + ++YD++HP Sbjct: 242 HPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQE-LRDVYDRSHPRA 297 >gi|226228936|ref|YP_002763042.1| integrase [Gemmatimonas aurantiaca T-27] gi|226092127|dbj|BAH40572.1| integrase [Gemmatimonas aurantiaca T-27] Length = 320 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL +G D+R++Q +LGH +STT IYT+V ++ Sbjct: 264 VGCHTFRHSFATHLLEDGYDIRTVQELLGHRDVSTTMIYTHVLNR 308 >gi|119945130|ref|YP_942810.1| integron integrase [Psychromonas ingrahamii 37] gi|119863734|gb|ABM03211.1| integron integrase [Psychromonas ingrahamii 37] Length = 324 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q LGH+ L TTQIYT+V Sbjct: 264 VTCHTLRHSFATHLLQRGTDIRTVQEQLGHTDLRTTQIYTHV 305 >gi|332306644|ref|YP_004434495.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173973|gb|AEE23227.1| integron integrase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 321 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q LGHS L TTQIYT++ Sbjct: 264 TVTPHTLRHSFATHLLQSGADIRTVQDQLGHSDLRTTQIYTHI 306 >gi|331007978|ref|ZP_08331026.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989] gi|330418212|gb|EGG92830.1| Integron integrase IntI4 [gamma proteobacterium IMCC1989] Length = 323 Score = 94.2 bits (234), Expect = 6e-18, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 37/46 (80%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 ++HTLRHSFATHLL +G D+R++Q LGHS + TT+IYT+V ++ Sbjct: 264 PVSSHTLRHSFATHLLQSGADIRTVQQQLGHSDVKTTEIYTHVLNQ 309 >gi|227461180|gb|ACP39537.1| putative integron integrase [uncultured microorganism] Length = 306 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 264 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 306 >gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH+ AT +L NG DLR IQ++LGH+ + +TQ+YT V+ + + ++ THP+ D Sbjct: 278 CHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQAVHASTHPAEQMAD 337 Query: 65 KK 66 +K Sbjct: 338 EK 339 >gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 41/62 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335 Query: 64 DK 65 D+ Sbjct: 336 DE 337 >gi|118581028|ref|YP_902278.1| integron integrase [Pelobacter propionicus DSM 2379] gi|118503738|gb|ABL00221.1| integron integrase [Pelobacter propionicus DSM 2379] Length = 468 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 32/41 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+HT RHSFATHLL G D+R IQ++LGHS L TT IYT+ Sbjct: 412 VTSHTFRHSFATHLLQAGYDIRVIQTLLGHSSLKTTMIYTH 452 >gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] Length = 398 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 40/60 (66%), Gaps = 1/60 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FAT +L+NG L +++ +LGH ++TT +YT+ + + ++Y+ HP ++K Sbjct: 242 PHVLRHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTHTSLAELQQMYN-AHPRASKKK 300 >gi|148994208|ref|ZP_01823501.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|168488872|ref|ZP_02713071.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|147927349|gb|EDK78380.1| tyrosine recombinase [Streptococcus pneumoniae SP9-BS68] gi|183572517|gb|EDT93045.1| tyrosine recombinase XerD [Streptococcus pneumoniae SP195] gi|332073382|gb|EGI83861.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] Length = 298 Score = 93.8 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289 >gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 346 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 40/61 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ Q+ Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQQE 335 Query: 64 D 64 Sbjct: 336 P 336 >gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 40/62 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|89147675|gb|ABD62696.1| integrase [uncultured bacterium] gi|89147677|gb|ABD62697.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH ++TT IYT+V Sbjct: 120 PATCHTLRHSFATHLLENGYDIRTVQELLGHKEVATTMIYTHV 162 >gi|83722829|gb|ABC41686.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 36/43 (83%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATHL+ +G D+R++Q +LGH ++TTQIYT+V Sbjct: 120 PVSAHTLRHSFATHLIESGYDIRTVQELLGHKDVATTQIYTHV 162 >gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5] gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5] Length = 305 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q +LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTKTSIKHLEAVYTTAYP 302 >gi|254284963|ref|ZP_04959929.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226] gi|150424966|gb|EDN16743.1| site-specific recombinase IntI4 [Vibrio cholerae AM-19226] Length = 320 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305 >gi|229508884|ref|ZP_04398375.1| integrase [Vibrio cholerae B33] gi|229354159|gb|EEO19091.1| integrase [Vibrio cholerae B33] Length = 282 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 218 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 260 >gi|89147367|gb|ABD62544.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 120 NGSCHTFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|153827714|ref|ZP_01980381.1| chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination [Vibrio cholerae MZO-2] gi|149737809|gb|EDM52714.1| chain A, Structural Basis For Broad Dna-Specificity In Integron Recombination [Vibrio cholerae MZO-2] Length = 314 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 257 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 299 >gi|89147504|gb|ABD62612.1| integrase [uncultured bacterium] Length = 164 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 122 VTTHTLRHSFATHLLESGADIRTVQELLGHKDVSTTMIYTHV 163 >gi|270292983|ref|ZP_06199194.1| putative integrase/recombinase XerD [Streptococcus sp. M143] gi|270278962|gb|EFA24808.1| putative integrase/recombinase XerD [Streptococcus sp. M143] Length = 298 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDNDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 289 >gi|89147396|gb|ABD62558.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R+IQ +LGH+ + TT IYT+V Sbjct: 120 PGSCHTFRHSFATHLLEAGYDIRTIQELLGHADVQTTMIYTHV 162 >gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1 str. NRG 857C] Length = 372 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147440|gb|ABD62580.1| integrase [uncultured bacterium] Length = 164 Score = 93.8 bits (233), Expect = 7e-18, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q ++GH ++TT IYT+V Sbjct: 121 NASCHTLRHSFATHLLEDGYDIRTVQELMGHKNVNTTMIYTHV 163 >gi|327474308|gb|EGF19715.1| integrase/recombinase XerD [Streptococcus sanguinis SK408] Length = 298 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|89147683|gb|ABD62700.1| integrase [uncultured bacterium] Length = 161 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATH+L NG D+R++Q +LGH +STTQIYT+V Sbjct: 118 PVTPHTFRHSFATHVLENGYDIRTVQDLLGHKDVSTTQIYTHV 160 >gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2] gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 310 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 36/54 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT L+ +G D+R +Q +LGHS ++TT+IYT+V+ + + + Sbjct: 249 VTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEALRSTLARA 302 >gi|77918157|ref|YP_355972.1| integrase [Pelobacter carbinolicus DSM 2380] gi|77544240|gb|ABA87802.1| integrase [Pelobacter carbinolicus DSM 2380] Length = 330 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K + + Sbjct: 274 VGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKNIDAV 323 >gi|223369782|gb|ACM88761.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 40/63 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ + Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPAEQTE 335 Query: 64 DKK 66 K Sbjct: 336 PDK 338 >gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 363 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 34/51 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + + H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V + I Sbjct: 308 NISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHVATNTFKSI 358 >gi|89147426|gb|ABD62573.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDAGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|77918979|ref|YP_356794.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380] gi|77545062|gb|ABA88624.1| site-specific recombinase XerD [Pelobacter carbinolicus DSM 2380] Length = 333 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HT RHSFATHLL NG ++R +Q ++GH+ + TT+IYT+V +K + + Sbjct: 274 VGCHTFRHSFATHLLENGVNIRVVQELMGHADVKTTEIYTHVMAKDINAV 323 >gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 308 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 38/54 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH++AT LL +G +L IQ++LGH+ L+TTQ+YT+V+ RM + + Sbjct: 254 KITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSDDRMASVVAK 307 >gi|89147384|gb|ABD62552.1| integrase [uncultured bacterium] gi|223369764|gb|ACM88752.1| integrase [uncultured bacterium] Length = 163 Score = 93.8 bits (233), Expect = 8e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369776|gb|ACM88758.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369772|gb|ACM88756.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147655|gb|ABD62686.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 372 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|240142448|ref|YP_002966958.1| putative site-specific integrase/recombinase [Methylobacterium extorquens AM1] gi|240012392|gb|ACS43617.1| Putative site-specific integrase/recombinase [Methylobacterium extorquens AM1] Length = 365 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 40/56 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+FA+HLLSNG DLRSIQ +LGH+ L TT+IY + +++R + HP Sbjct: 297 VSPHKLRHAFASHLLSNGADLRSIQELLGHADLGTTEIYLHTDTRRTHGMVRDLHP 352 >gi|300872271|gb|ADK38963.1| IntI4 [Vibrio sp. V3(2010)] Length = 293 Score = 93.4 bits (232), Expect = 8e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28] Length = 450 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FAT LL+NG D+R++Q +LGH+ LS+TQIYT+V KR ++Y Sbjct: 242 KIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTHVT-KRAFKVY 292 >gi|260778906|ref|ZP_05887798.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450] gi|260605070|gb|EEX31365.1| integron integrase IntI2 [Vibrio coralliilyticus ATCC BAA-450] Length = 321 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/47 (57%), Positives = 34/47 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+RS+Q +LGH+ + TTQIYT+V + Sbjct: 263 KVTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHVIGQH 309 >gi|24373597|ref|NP_717640.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347925|gb|AAN55084.1|AE015645_10 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 319 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|223369768|gb|ACM88754.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|300872267|gb|ADK38961.1| IntI4 [Vibrio sp. V1(2010)] Length = 293 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|167623565|ref|YP_001673859.1| integron integrase [Shewanella halifaxensis HAW-EB4] gi|167353587|gb|ABZ76200.1| integron integrase [Shewanella halifaxensis HAW-EB4] Length = 320 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+R+IQ +LGH+ ++TTQIYT+V + Sbjct: 264 VTCHTFRHSFATHLLQAGRDIRTIQELLGHNDVNTTQIYTHVLGQH 309 >gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum] gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 321 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/47 (57%), Positives = 30/47 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HT RHS ATHLL G DLR IQ +LGH L TTQ YT+V + Sbjct: 256 VTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTHVGLADL 302 >gi|89147454|gb|ABD62587.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL +G D+R++Q +LGH+ + TT+IYT+V Sbjct: 121 VSCHVLRHSFATHLLESGRDIRTVQELLGHTDVKTTEIYTHV 162 >gi|89147332|gb|ABD62528.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC] gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC] Length = 317 Score = 93.4 bits (232), Expect = 9e-18, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+THP Sbjct: 256 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNL 315 Query: 62 QK 63 ++ Sbjct: 316 EE 317 >gi|89147551|gb|ABD62635.1| integrase [uncultured bacterium] gi|89147590|gb|ABD62654.1| integrase [uncultured bacterium] gi|89147618|gb|ABD62668.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 SGSCHTFRHSFATHLLENGQDIRTVQELLGHKDVSTTMIYTHV 162 >gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17] gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17] Length = 293 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT +L++ L S++ +LGH+RLSTT+IYT+ +++ +Y HP Sbjct: 237 TPHVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTHTTFEQLKRVYTNAHPRA 293 >gi|227461209|gb|ACP39549.1| putative integron integrase [uncultured microorganism] Length = 286 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 244 PASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKTTMIYTHV 286 >gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276] gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276s] Length = 315 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+THP Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNL 313 Query: 62 QK 63 ++ Sbjct: 314 EE 315 >gi|300872281|gb|ADK38968.1| IntI4 [Vibrio sp. V82(2010)] Length = 293 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 282 >gi|13445488|gb|AAK26251.1|AF263519_1 integrase INTI1 [Pseudomonas aeruginosa] Length = 337 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147524|gb|ABD62622.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 120 PVSCHTLRHSFATHLLQTGQDIRTVQELLGHADVSTTMIYTHV 162 >gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus] Length = 324 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT++ Sbjct: 264 NISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306 >gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D/UW-3/CX] gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis A/HAR-13] gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 434/Bu] gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/Jali20/OT] gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/TZ1A828/OT] gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70] gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s] gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D(s)2923] gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2tet1] gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia trachomatis A/HAR-13] gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu] gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT] gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2] gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/150] gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9768] gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11222] gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11074] gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/11023] gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9301] Length = 315 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 44/62 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T HT+RH+ ATH L G DL++IQ +LGH+ L TT IYT+V+ K +I+D+THP Sbjct: 254 SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHPHNL 313 Query: 62 QK 63 ++ Sbjct: 314 EE 315 >gi|89147386|gb|ABD62553.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147340|gb|ABD62532.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHLLQAGTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|262173546|ref|ZP_06041223.1| integron integrase IntI4 [Vibrio mimicus MB-451] gi|261890904|gb|EEY36891.1| integron integrase IntI4 [Vibrio mimicus MB-451] Length = 320 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIY +V Sbjct: 263 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYAHV 305 >gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 300 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 40/58 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRHSFAT LL G D+ +IQ ++GH+ L++T+IY + +SKR+ E ++ P I Sbjct: 240 ITPHKLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIRPGI 297 >gi|95931413|ref|ZP_01314121.1| Integron integrase [Desulfuromonas acetoxidans DSM 684] gi|95132531|gb|EAT14222.1| Integron integrase [Desulfuromonas acetoxidans DSM 684] Length = 335 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 32/45 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RH FATHLL G D+R+IQ +LGH ++TT IYT+V +K Sbjct: 278 VGCHTFRHCFATHLLEAGYDIRTIQELLGHKDVNTTMIYTHVLNK 322 >gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] Length = 296 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 42/61 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRHSFATH+L G ++ ++ ++GH L++TQ+YT N +++ ++++ HP QK Sbjct: 234 SPHILRHSFATHVLEEGAEISKVKLLMGHKSLASTQVYTGTNIEQLKKVFNNAHPRAIQK 293 Query: 64 D 64 + Sbjct: 294 E 294 >gi|83722823|gb|ABC41683.1| integrase [uncultured bacterium] Length = 163 Score = 93.4 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus S26/3] gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3] Length = 312 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 42/56 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT+V+ K + ++++HP Sbjct: 255 ITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQTHNESHP 310 >gi|300872295|gb|ADK38975.1| IntI4 [Vibrio sp. V95(2010)] Length = 296 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 288 >gi|241992598|gb|ACS73653.1| IntI [uncultured bacterium] Length = 316 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 274 PATTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316 >gi|223369762|gb|ACM88751.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|223369774|gb|ACM88757.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369770|gb|ACM88755.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|332076314|gb|EGI86780.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] Length = 298 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|307131117|ref|YP_003883133.1| Integrase/recombinase [Dickeya dadantii 3937] gi|306528646|gb|ADM98576.1| Integrase/recombinase [Dickeya dadantii 3937] Length = 139 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 40/56 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RH+ ATH+L NG DLR IQ++LGH+ + +TQIYT V+ + + ++ THP+ Sbjct: 47 SCHLFRHAMATHMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPA 102 >gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703] gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703] Length = 366 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 40/63 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++LGH+ + +TQIYT V+ + + ++ THP+ Sbjct: 277 SCHLFRHAMATQMLENGADLRWIQAMLGHASVESTQIYTQVSIRALQAVHASTHPAEQPD 336 Query: 64 DKK 66 + Sbjct: 337 SDE 339 >gi|223369832|gb|ACM88785.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ +LGH+ + TT IYT+V Sbjct: 121 ASCHTLRHSFATHLLEDGYDIRTIQELLGHADVQTTMIYTHV 162 >gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium SS3/4] Length = 284 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK-RMMEIYDQTHPS 59 T HTLRHSFA HLLSNG D+R++Q+++GHS L++TQ+YT + E Y HP Sbjct: 226 ITPHTLRHSFAAHLLSNGADMRAVQTMMGHSDLASTQMYTAYAMDSAVREAYQGAHPR 283 >gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii] gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii] gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida] gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii] gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae] Length = 337 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] Length = 297 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 39/51 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HTLRHS+ATHLL+ G DLRS+Q +LGH+ ++TTQIYT++ K + + + Sbjct: 244 HTLRHSYATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDKDLEAYHRKF 294 >gi|89147526|gb|ABD62623.1| integrase [uncultured bacterium] Length = 162 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R +QS+LGH+ L TT IYT+V Sbjct: 120 VTCHTFRHSFATHLLESGYDIRQVQSLLGHASLKTTMIYTHV 161 >gi|300872297|gb|ADK38976.1| IntI4 [Vibrio sp. V96(2010)] Length = 291 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 241 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 283 >gi|239937597|gb|ACS35604.1| putative IntI2-like integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] Length = 301 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FAT +L D+R IQ ILGHS ++TTQIYT++++ + EI +P Sbjct: 237 ITPHMFRHTFATMMLEEDVDIRYIQEILGHSSITTTQIYTHMSAHKQKEIMSHKNPRNK 295 >gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 375 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 34/51 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + + H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V + I Sbjct: 320 NISPHILRHSFATHLLESGVDLRKIQVLLGHGSTKTTEIYTHVATNTFKSI 370 >gi|153001869|ref|YP_001367550.1| integron integrase [Shewanella baltica OS185] gi|151366487|gb|ABS09487.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 36/46 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 296 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 40/63 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FATHLL G D+ +I+ +LGHS L++T++YT+ N K + + + HP Sbjct: 234 KLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYTHSNFKELSKAHQAAHPRSQ 293 Query: 62 QKD 64 + Sbjct: 294 GDE 296 >gi|89147626|gb|ABD62672.1| integrase [uncultured bacterium] Length = 162 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 119 AATCHTFRHSFATHLLERGQDIRTVQELLGHKDVSTTMIYTHV 161 >gi|89147478|gb|ABD62599.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar Infantis] Length = 337 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|223369766|gb|ACM88753.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51] gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 290 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FAT +L+NG D+ S+Q++LGH TTQIY +R ++Y Q Sbjct: 233 NVHPHVLRHTFATLMLNNGADIASVQALLGHEDPGTTQIYAQSTDERKQQVYKQH 287 >gi|153000208|ref|YP_001365889.1| integron integrase [Shewanella baltica OS185] gi|151364826|gb|ABS07826.1| integron integrase [Shewanella baltica OS185] Length = 319 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 36/46 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1 str. Okra] gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 326 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+S R+ E +++P + Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326 >gi|89147612|gb|ABD62665.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 AASCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147640|gb|ABD62679.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 120 PATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162 >gi|89147434|gb|ABD62577.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHL+ +G D+R+IQ +LGH+ + TT IYT+V Sbjct: 120 PVTCHTLRHSFATHLIEDGYDIRTIQELLGHTDVRTTMIYTHV 162 >gi|78045912|ref|YP_362087.1| putative integrase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034342|emb|CAJ21987.1| putative integrase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 349 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++T QIY +V Sbjct: 299 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 341 >gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes] gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli] gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium] gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1] gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU] gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli] gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli] gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae] gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda] gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa] gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli] gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes] gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes] gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans] gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli] gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli] gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa] gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae] gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli] gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa] gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli] gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium] gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli] gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii] gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae] gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae] gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Kentucky] gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae] gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli] gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii] gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1] gi|108945866|gb|ABG23475.1| integrase [Morganella morganii] gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa] gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa] gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae] gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa] gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae] gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU] gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa] gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa] gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa] gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca] gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2] gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii] gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX] gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli] gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli] gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii] gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli] gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli] gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli] gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa] gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae] gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii] gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa] gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda] gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii] gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium] gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2] Length = 337 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992588|gb|ACS73646.1| IntI [uncultured bacterium] gi|241992595|gb|ACS73651.1| IntI [uncultured bacterium] gi|241992630|gb|ACS73675.1| IntI [uncultured bacterium] Length = 316 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH+ ++TT IYT+V Sbjct: 274 PATTHTLRHSFATHLLMSGYDIRTVQELLGHADVATTMIYTHV 316 >gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] Length = 324 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT++ Sbjct: 264 NISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLKTTQIYTHI 306 >gi|307705945|ref|ZP_07642775.1| tyrosine recombinase xerD [Streptococcus mitis SK597] gi|307620500|gb|EFN99606.1| tyrosine recombinase xerD [Streptococcus mitis SK597] Length = 295 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 233 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISITQIYTHVSHSKQKEILSSFNP 289 >gi|223369800|gb|ACM88769.1| integrase [uncultured bacterium] Length = 163 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|114047627|ref|YP_738177.1| integron integrase [Shewanella sp. MR-7] gi|113889069|gb|ABI43120.1| integron integrase [Shewanella sp. MR-7] Length = 319 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|88857913|ref|ZP_01132555.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2] gi|88819530|gb|EAR29343.1| super-integron integrase IntIA [Pseudoalteromonas tunicata D2] Length = 167 Score = 93.0 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL G D+R++Q LGHS + TTQIYT+V + Sbjct: 110 VSCHTLRHSFATHLLQAGMDIRTVQEQLGHSDVKTTQIYTHVLKQ 154 >gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 339 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 25/46 (54%), Positives = 34/46 (73%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+ ATH+L NG D+R IQ++LGH+ LS+TQIYT V ++ Sbjct: 277 CHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQVAIGKLK 322 >gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+S R+ E +++P + Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326 >gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. ATCC 19397] gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. Hall] gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+S R+ E +++P + Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326 >gi|89147408|gb|ABD62564.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATH+L +G D+R+IQ +LGH + TTQIYT+V Sbjct: 121 VSCHTLRHSFATHMLESGYDIRTIQELLGHRSVETTQIYTHV 162 >gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033] gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa] Length = 337 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis] Length = 324 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q LGH+ L TTQIYT++ Sbjct: 265 ISCHTLRHSFATHLLQSGADIRTVQEQLGHADLKTTQIYTHI 306 >gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F str. Langeland] gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065] Length = 326 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+S R+ E +++P + Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326 >gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 314 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 40/59 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHSFA H+L+ G DLR++Q +LGH+ +STTQIYT++N + + P ++ Sbjct: 241 TPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRASE 299 >gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 316 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/54 (51%), Positives = 37/54 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T HT+RH+FA H L G D R +Q+ LGHS L+TTQ YT V + + E Y++TH Sbjct: 257 TPHTMRHTFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDRYLRESYERTH 310 >gi|320162129|ref|YP_004175354.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995983|dbj|BAJ64754.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 103 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 32/46 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HT RH FATHLL G D+R++Q +LGH + TT IYT+V ++ Sbjct: 47 PVSPHTFRHCFATHLLEAGYDIRTVQELLGHKDVKTTMIYTHVLNR 92 >gi|89147458|gb|ABD62589.1| integrase [uncultured bacterium] Length = 164 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAH LRHS+ATHLL G DLR+IQ LGHS + TT+IYT+V Sbjct: 122 VTAHVLRHSYATHLLQKGVDLRTIQEALGHSSVKTTEIYTHV 163 >gi|223369798|gb|ACM88768.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTLRHSFATHLLQAGPDIRTVQELLGHTDVKTTQIYTHV 162 >gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3 str. Loch Maree] gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+S R+ E +++P + Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326 >gi|319427384|gb|ADV55458.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|260655773|ref|ZP_05861242.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260629389|gb|EEX47583.1| tyrosine recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 308 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHS AT LL G DLR++Q LGHS + TT+ YT+ + + + ++YD+ HP Sbjct: 243 HPHVLRHSVATRLLRRGMDLRTLQEFLGHSSIGTTEKYTHFDLE-LRDVYDRCHPHAR 299 >gi|319425156|gb|ADV53230.1| integron integrase [Shewanella putrefaciens 200] Length = 319 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQAGRDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. Iowa] gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii str. Iowa] Length = 305 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/55 (54%), Positives = 40/55 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 TAH+ RHSFA+HLL +G DLRS+Q++LGH LSTTQ YT + K + +Y +P Sbjct: 248 TAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTKTSIKHLEAVYTTAYP 302 >gi|301596538|ref|ZP_07241546.1| IntI1 integrase [Acinetobacter baumannii AB059] Length = 200 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 7/59 (11%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V ++ R+ ++ Sbjct: 129 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAASNGRLRKVL 187 >gi|30908740|gb|AAP37602.1| IntI [uncultured bacterium] Length = 161 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161 >gi|83722821|gb|ABC41682.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|332875882|ref|ZP_08443671.1| integron integrase [Acinetobacter baumannii 6014059] gi|332735920|gb|EGJ66958.1| integron integrase [Acinetobacter baumannii 6014059] Length = 318 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 254 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 296 >gi|227461216|gb|ACP39552.1| putative integron integrase [uncultured microorganism] Length = 311 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+ Sbjct: 270 PASVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTH 311 >gi|89147438|gb|ABD62579.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q ++GH ++TT IYT+V Sbjct: 120 PVSCHMLRHSFATHLLEQGCDIRTVQQLMGHKNVATTMIYTHV 162 >gi|89147328|gb|ABD62526.1| integrase [uncultured bacterium] gi|89147330|gb|ABD62527.1| integrase [uncultured bacterium] gi|89147342|gb|ABD62533.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162 >gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] Length = 326 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+S R+ E +++P + Sbjct: 268 SPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAV-KSNPLSDE 326 >gi|167946419|ref|ZP_02533493.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 71 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 44/59 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HTLRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V +R+ ++ + HP Sbjct: 13 PISPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARQRLKALHAKHHPRA 71 >gi|119356102|ref|YP_910746.1| integron integrase [Chlorobium phaeobacteroides DSM 266] gi|119353451|gb|ABL64322.1| integron integrase [Chlorobium phaeobacteroides DSM 266] Length = 338 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL G D+R++Q +LGH+ + TT IYT+V ++ Sbjct: 282 ATCHTFRHSFATHLLEGGYDIRTVQELLGHNDVRTTMIYTHVLNR 326 >gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 334 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|261250897|ref|ZP_05943471.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] gi|260937770|gb|EEX93758.1| integron integrase IntI4 [Vibrio orientalis CIP 102891] Length = 320 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q LGHS + TTQIYT+V Sbjct: 264 VTCHTLRHSFATHLLESGADIRTVQEQLGHSDVRTTQIYTHV 305 >gi|332140068|ref|YP_004425806.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|332143134|ref|YP_004428872.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550090|gb|AEA96808.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553156|gb|AEA99874.1| putative integrase [Alteromonas macleodii str. 'Deep ecotype'] Length = 322 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT++ + Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQIYTHILQQ 308 >gi|89147336|gb|ABD62530.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGHDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369828|gb|ACM88783.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHANVKTTMIYTHV 162 >gi|198240906|gb|ABG36697.2| integrase [Salmonella enterica subsp. enterica serovar Newport] Length = 337 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147632|gb|ABD62675.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 330 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ +P + Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328 Query: 63 KD 64 +D Sbjct: 329 ED 330 >gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] Length = 359 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H LRH+ AT + G D+ +++ ILGH +STTQIYT++N +++ E Q P Q+ Sbjct: 273 SPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLREAV-QASPLARQR 331 >gi|89147648|gb|ABD62683.1| integrase [uncultured bacterium] Length = 163 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL NG D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PASCHTFRHSFATHLLENGYDIRTVQELLGHTNVKTTMIYTHV 162 >gi|45673|emb|CAA31355.1| unnamed protein product [Plasmid pLMO20] Length = 337 Score = 92.6 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|27383511|ref|NP_775042.1| class I integron integrase [Citrobacter freundii] gi|32455549|ref|NP_862305.1| DNA integrase IntI1 [Corynebacterium glutamicum] gi|133756208|ref|YP_001096358.1| hypothetical protein pLEW517_p33 [Escherichia coli] gi|169797581|ref|YP_001715374.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|200388793|ref|ZP_03215405.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226807703|ref|YP_002791398.1| IntI1 [Enterobacter cloacae] gi|226810014|ref|YP_002791708.1| IntI1 [Enterobacter cloacae] gi|297622202|ref|YP_003675754.1| IntIA [Klebsiella oxytoca KOX105] gi|301028321|ref|ZP_07191578.1| integron integrase [Escherichia coli MS 196-1] gi|317050213|ref|YP_004111329.1| integron integrase [Desulfurispirillum indicum S5] gi|5107035|gb|AAD39931.1|AF133699_1 integron In50 integrase [Pseudomonas aeruginosa] gi|9836716|gb|AAG00280.1|AF164956_12 DNA integrase IntI1 [Corynebacterium glutamicum] gi|10185692|gb|AAG14404.1|AF188331_3 putative integrase [Shigella flexneri] gi|12719023|gb|AAK02045.1|AF261825_14 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|2385351|emb|CAA75043.1| int [Corynebacterium glutamicum] gi|3661459|gb|AAC64362.1| class I integrase [Pseudomonas aeruginosa] gi|4063851|gb|AAC98492.1| integrase [Salmonella typhimurium DT104] gi|5420398|emb|CAB46685.1| DNA integrase [Pseudomonas aeruginosa] gi|17383996|emb|CAC81318.1| IntI1 DNA integrase [Salmonella typhimurium] gi|17384003|emb|CAC81325.1| IntI1 DNA integrase [Salmonella typhimurium] gi|27261364|gb|AAN87705.1| class I integron integrase [Citrobacter freundii] gi|34556054|emb|CAE46709.1| DNA integrase [Pseudomonas aeruginosa] gi|34556062|emb|CAE46716.1| DNA integrase [Pseudomonas aeruginosa] gi|57208125|emb|CAI40605.1| class 1 integrase [Corynebacterium amycolatum] gi|66277417|gb|AAY44597.1| class 1 integron integrase [Enterobacter cloacae] gi|82653445|emb|CAG23925.2| type I integrase [Pseudomonas aeruginosa] gi|83627316|dbj|BAE54317.1| integrase [Escherichia coli] gi|85376217|gb|ABC70304.1| IntI1 [Pseudomonas aeruginosa] gi|85376219|gb|ABC70305.1| IntI1 [Pseudomonas aeruginosa] gi|90265346|emb|CAJ77028.1| Integrase [Acinetobacter baumannii] gi|110084043|gb|ABG49197.1| hypothetical protein [Escherichia coli] gi|118402688|emb|CAI94346.1| type I integrase [Pseudomonas aeruginosa] gi|118402758|emb|CAI43354.1| integrase/recombinase [Pseudomonas aeruginosa] gi|122891987|gb|ABM67075.1| IntI1 integrase [Aeromonas caviae] gi|148455793|gb|ABQ65133.1| IntI1 [Pseudomonas putida] gi|151564272|gb|ABS17587.1| integrase [Klebsiella pneumoniae] gi|166865480|gb|ABZ01842.1| IntI1 [Salmonella enterica subsp. enterica] gi|169150508|emb|CAM88414.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|187369485|dbj|BAG31351.1| class 1 integrase IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|193783422|emb|CAE81269.2| IntI1 [Klebsiella pneumoniae] gi|199605891|gb|EDZ04436.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|226425929|gb|ACO54022.1| IntI1 [Enterobacter cloacae] gi|226426240|gb|ACO54332.1| IntI1 [Enterobacter cloacae] gi|253558898|gb|ACT32121.1| IntI1 [Pseudomonas putida] gi|255039694|gb|ACT99624.1| IntI1 [Pseudomonas aeruginosa] gi|265509433|gb|ACY75520.1| integrase [Pseudomonas aeruginosa] gi|265509448|gb|ACY75535.1| integrase [Pseudomonas aeruginosa] gi|296492021|gb|ADH29523.1| IntI1 [Klebsiella oxytoca KOX105] gi|297593574|gb|ADI47529.1| IntI1 integrase [Klebsiella pneumoniae] gi|298104544|gb|ADI55012.1| class I integron integrase [Aeromonas caviae] gi|299878615|gb|EFI86826.1| integron integrase [Escherichia coli MS 196-1] gi|312914891|dbj|BAJ38865.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312915760|dbj|BAJ39733.1| IntI1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|316945297|gb|ADU64773.1| integron integrase [Desulfurispirillum indicum S5] gi|321159227|gb|ADW66520.1| DNA integrase [Enterobacter aerogenes] gi|321268198|gb|ADW78905.1| IntI [Escherichia coli] gi|332144420|dbj|BAK19640.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|332144565|dbj|BAK19780.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 330 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ +P + Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328 Query: 63 KD 64 +D Sbjct: 329 ED 330 >gi|89147420|gb|ABD62570.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|325929257|ref|ZP_08190393.1| integron integrase [Xanthomonas perforans 91-118] gi|60550151|gb|AAX24163.1| truncated integrase [Xanthomonas perforans] gi|60550154|gb|AAX24165.1| truncated integrase [Xanthomonas perforans] gi|325540396|gb|EGD12002.1| integron integrase [Xanthomonas perforans 91-118] Length = 315 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++T QIY +V Sbjct: 265 PATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVTTKQIYAHV 307 >gi|312884536|ref|ZP_07744240.1| phage integrase family site specific recombinase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367848|gb|EFP95396.1| phage integrase family site specific recombinase [Vibrio caribbenthicus ATCC BAA-2122] Length = 327 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFAT LL +G D+R++Q +LGHS ++TTQIYT+V + Sbjct: 262 ITCHTFRHSFATELLRSGQDIRTVQELLGHSDVATTQIYTHVIGEH 307 >gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii] Length = 320 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147349|gb|ABD62535.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFAT LL NG D+R+IQ +LGH+ L TT IYT+V Sbjct: 120 PGSCHTLRHSFATRLLENGYDVRTIQELLGHADLQTTMIYTHV 162 >gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQT 56 + H+LRHSFATHLL G DLR IQ +LGHS TT+IYT+V+ ++ D+ Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSEANFSKIKSPLDKF 352 >gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7] gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae] Length = 320 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|155024|gb|AAA72104.1| integrase [Shigella sonnei] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147500|gb|ABD62610.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VTVHTLRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74] Length = 390 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRHSFATHLL +G D+R IQ +LGH + TT YT+V + ++ ++ Sbjct: 337 HSLRHSFATHLLESGVDIRHIQELLGHESILTTMRYTHVTADKISKL 383 >gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 370 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 37/50 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL +G D+R IQ +LGH +TT+IYT+V++K + I Sbjct: 314 VTLHWLRHSYATHLLESGTDIRFIQELLGHKSSTTTEIYTHVSNKSIQSI 363 >gi|89147400|gb|ABD62560.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|83722831|gb|ABC41687.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G DLR++Q +LGH+ +STT IYT+V Sbjct: 120 PASTHTLRHSFATHLLEAGYDLRTVQELLGHADVSTTMIYTHV 162 >gi|89147600|gb|ABD62659.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL +G D+R++Q ++GH+ + TT IYT+V Sbjct: 120 AATPHTLRHSFATHLLESGHDIRTVQELMGHADVKTTMIYTHV 162 >gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 344 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 38/56 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ + + ++ THP+ Sbjct: 276 SCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQAVHASTHPA 331 >gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5] gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|91215321|ref|ZP_01252293.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91186926|gb|EAS73297.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 124 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 33/52 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHLL G DLR IQ +LGH TT+IYT+V + I Sbjct: 68 IPVTPHMLRHSFATHLLEAGVDLRQIQVLLGHQSTKTTEIYTHVATNTFKTI 119 >gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 3/57 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN---SKRMMEIYDQT 56 + H+LRHSFATHLL G DLR IQ +LGHS TT+IYT+V+ ++ D+ Sbjct: 296 ASVHSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHVSVANFSKIKSPLDKF 352 >gi|9507567|ref|NP_052898.1| integrase [Plasmid R100] gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46] gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium] gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata] gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium] gi|58000325|ref|YP_190211.1| integrase [Escherichia coli] gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli] gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa] gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520] gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae] gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila] gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae] gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171] gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1] gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae] gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae] gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae] gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae] gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae] gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae] gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli] gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-] gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105] gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1] gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1] gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1] gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1] gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1] gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli] gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3] gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|2120150|pir||I39499 integrase - Acinetobacter baumannii gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae] gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa] gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa] gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa] gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa] gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli] gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa] gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46] gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa] gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii] gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79] gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli] gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100] gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli] gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46] gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium] gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida] gi|30349168|gb|AAP20904.1| integrase [Escherichia coli] gi|30349183|gb|AAP20918.1| integrase [Escherichia coli] gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli] gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium] gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa] gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida] gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae] gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae] gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae] gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica] gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a] gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa] gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa] gi|47716827|gb|AAT37602.1| integrase [Escherichia coli] gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae] gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa] gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium] gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae] gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae] gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa] gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae] gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli] gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans] gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa] gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli] gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica] gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila] gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar] gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8] gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11] gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae] gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium] gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae] gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae] gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5] gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa] gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa] gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa] gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa] gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa] gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae] gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa] gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa] gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae] gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6] gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae] gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli] gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa] gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae] gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae] gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli] gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm] gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa] gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171] gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1] gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa] gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport] gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa] gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae] gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes] gi|225730210|gb|ACO24921.1| integrase [Escherichia coli] gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae] gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae] gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae] gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae] gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri] gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli] gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa] gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa] gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli] gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae] gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa] gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa] gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa] gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa] gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca] gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017] gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-] gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042] gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes] gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans] gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni] gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli] gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli] gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida] gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana] gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3] gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105] gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae] gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1] gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1] gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1] gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1] gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1] gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Enteritidis] gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli] gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae] gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1] gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10] gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium] gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli] gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli] gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489] gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3] gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253] gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens] gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227] gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3] gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|332751435|gb|EGJ81838.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332752605|gb|EGJ82991.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332758761|gb|EGJ89080.1| integron integrase family protein [Shigella flexneri 2747-71] gi|332765272|gb|EGJ95498.1| integron integrase family protein [Shigella flexneri K-671] gi|332765338|gb|EGJ95557.1| integron integrase family protein [Shigella flexneri K-671] gi|333005791|gb|EGK25309.1| integron integrase family protein [Shigella flexneri K-218] gi|333006038|gb|EGK25552.1| integron integrase family protein [Shigella flexneri VA-6] gi|333008515|gb|EGK27985.1| integron integrase family protein [Shigella flexneri K-272] gi|333011761|gb|EGK31167.1| integron integrase family protein [Shigella flexneri K-227] gi|333012763|gb|EGK32142.1| integron integrase family protein [Shigella flexneri K-304] gi|333020622|gb|EGK39882.1| integron integrase family protein [Shigella flexneri K-227] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] Length = 363 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/47 (57%), Positives = 33/47 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + T H LRHSFATHLL +G DLR IQ +LGH TT+IYT+V + Sbjct: 307 VRVTPHVLRHSFATHLLESGTDLRHIQVLLGHGSTKTTEIYTHVATN 353 >gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 461 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V + + P Sbjct: 282 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV---ASPLDR 338 Query: 62 QKDK 65 +D+ Sbjct: 339 LRDE 342 >gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|160874836|ref|YP_001554152.1| integron integrase [Shewanella baltica OS195] gi|160860358|gb|ABX48892.1| integron integrase [Shewanella baltica OS195] gi|315267074|gb|ADT93927.1| integron integrase [Shewanella baltica OS678] Length = 319 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 36/46 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|229516134|ref|ZP_04405583.1| integrase [Vibrio cholerae RC9] gi|229346784|gb|EEO11753.1| integrase [Vibrio cholerae RC9] Length = 98 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 34 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 76 >gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium] gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa] Length = 336 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri] gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 29/47 (61%), Positives = 36/47 (76%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL NG DLR IQ +LGH+ STT+ YT+V++K + I Sbjct: 320 HVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKNLKRI 366 >gi|12667367|gb|AAK01408.1|AF324211_1 site-specific tyrosine recombinase IntIA [Shewanella putrefaciens] Length = 317 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/46 (60%), Positives = 36/46 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL +G D+RS+Q +LGH+ +STTQIYT+V + Sbjct: 263 VTCHTFRHSFATHLLQSGSDIRSVQELLGHNDVSTTQIYTHVLGQH 308 >gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412] gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|170293912|gb|ACB13045.1| IntI1 [Thauera sp. B4] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|153821954|ref|ZP_01974621.1| DNA integrase IntI1 [Vibrio cholerae B33] gi|126520493|gb|EAZ77716.1| DNA integrase IntI1 [Vibrio cholerae B33] Length = 311 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 247 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 289 >gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147373|gb|ABD62547.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 120 PATPHTLRHSFATHLLESGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|77562727|gb|ABB00017.1| class 1 integrase [Pseudomonas aeruginosa] Length = 323 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 352 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 38/55 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++++THP+ Sbjct: 268 CHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322 >gi|223369836|gb|ACM88787.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|89147598|gb|ABD62658.1| integrase [uncultured bacterium] Length = 163 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S + HT RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 SGSCHTFRHSFATHLLENGQDVRTVQELLGHKDVSTTMIYTHV 162 >gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 372 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 32/51 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DLR IQ +LGH+ TT+IYT+V + I Sbjct: 315 PVRPHMLRHSFATHLLEAGTDLRHIQLLLGHNSTKTTEIYTHVATDTFKTI 365 >gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis] Length = 337 Score = 92.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|156138687|dbj|BAF75920.1| integron integrase [uncultured bacterium] Length = 181 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT+ Sbjct: 140 PAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYTH 181 >gi|89147398|gb|ABD62559.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 120 PGSCHTFRHSFATHLLEAGYDIRTVQELLGHKDVTTTMIYTHV 162 >gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] Length = 296 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFATHLL+ G DL ++ +LGH+ LSTTQ Y++ + ++ EI++Q HP Sbjct: 240 SPHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSHNSLDQIKEIFNQAHPKA 296 >gi|89147436|gb|ABD62578.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT+RHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 121 VTSHTMRHSFATHLLENGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|225155384|ref|ZP_03723876.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2] gi|224803840|gb|EEG22071.1| integrase/recombinase (E2 protein) [Opitutaceae bacterium TAV2] Length = 341 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 34/43 (79%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 T H LRH++ATHLL +G D+R++Q +LGH+ ++TT IYT+ + Sbjct: 284 ATPHRLRHAYATHLLESGVDIRTVQDMLGHADVATTMIYTHTS 326 >gi|88800925|ref|ZP_01116478.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Reinekea sp. MED297] gi|88776370|gb|EAR07592.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Reinekea sp. MED297] Length = 325 Score = 91.9 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL+ G D+R+IQ ++GH L+TT IYT++ M + Sbjct: 268 VTCHTLRHSFATHLLTTGTDIRTIQQLMGHKDLNTTMIYTHILMTDMRSV 317 >gi|227461211|gb|ACP39550.1| putative integron integrase [uncultured microorganism] Length = 300 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 259 VHPHTLRHSFATHLLETGSDIRTVQELLGHSDVSTTMIYTHV 300 >gi|294053866|ref|YP_003547524.1| integron integrase [Coraliomargarita akajimensis DSM 45221] gi|293613199|gb|ADE53354.1| integron integrase [Coraliomargarita akajimensis DSM 45221] Length = 448 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+H LRHSFATH+L NG D+R++Q +LGH R+ TTQ Y +V K Sbjct: 389 VTSHALRHSFATHMLENGTDIRTVQDLLGHRRIETTQTYLHVMQK 433 >gi|89147363|gb|ABD62542.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHL+ G D+R++Q +LGH +STT IYT+V Sbjct: 121 VSCHTFRHSFATHLIEVGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147394|gb|ABD62557.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHSFATHLL G D+R+IQ ++GH+ +STT IYT+V Sbjct: 120 TGSCHSLRHSFATHLLEAGYDIRTIQELMGHADVSTTMIYTHV 162 >gi|241992519|gb|ACS73597.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 295 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYDQTHPS 59 T HTLRHSFA HLL NG D+ ++Q++LGHS ++TTQ+Y N + + Y HP Sbjct: 237 ITPHTLRHSFAAHLLRNGADIHAVQAMLGHSDMATTQMYMNYTQGEDLRRSYTGAHPR 294 >gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001] gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001] Length = 325 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 35/46 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + + HT RHSFATHLL G D+R+IQ +LGH +STT IYT+V ++ Sbjct: 268 AASCHTFRHSFATHLLERGQDIRTIQELLGHKDVSTTMIYTHVLNR 313 >gi|119473240|ref|ZP_01614917.1| putative integrase [Alteromonadales bacterium TW-7] gi|119444534|gb|EAW25851.1| putative integrase [Alteromonadales bacterium TW-7] Length = 323 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL +G D+R++Q+ LGH+ + TTQIYT+V + Sbjct: 266 VTPHTFRHSFATHLLQSGSDIRTVQAQLGHTDVKTTQIYTHVLQQ 310 >gi|94442290|dbj|BAE93644.1| integron integrase [uncultured bacterium] Length = 162 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|223369794|gb|ACM88766.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHIFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|89147557|gb|ABD62638.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSCHALRHSFATHLLEAGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|1197009|gb|AAA88676.1| unknown protein [Escherichia coli] Length = 337 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147462|gb|ABD62591.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RHSFATHLL NG D+R++Q +LGHS + TT IYT+V Sbjct: 121 VTPHIFRHSFATHLLENGYDVRTVQELLGHSDVKTTMIYTHV 162 >gi|254427016|ref|ZP_05040723.1| integron integrase subfamily [Alcanivorax sp. DG881] gi|196193185|gb|EDX88144.1| integron integrase subfamily [Alcanivorax sp. DG881] Length = 328 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFATHLL G D+R++Q +LGHS +STT+ Y +V ++ Sbjct: 274 PHTFRHSFATHLLEKGYDIRTVQELLGHSDVSTTERYLHVMNR 316 >gi|168699006|ref|ZP_02731283.1| Integron integrase [Gemmata obscuriglobus UQM 2246] Length = 322 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+H+ RHSFATHL+ +G D+R++Q +LGH + TT IYT+V +K Sbjct: 266 VTSHSFRHSFATHLIESGTDIRTVQELLGHESVETTMIYTHVLNK 310 >gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] Length = 580 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 35/51 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL NG D+R IQ LGHS + TT +YT++ + +I Sbjct: 512 KATVHTLRHSFATHLLENGTDIRYIQQFLGHSSIKTTTVYTHLTKTAVDKI 562 >gi|89147661|gb|ABD62689.1| integrase [uncultured bacterium] Length = 163 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFATHLL N D+R++Q +LGH +STT IYT+V Sbjct: 120 AATCHTFRHSFATHLLENDYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|15808708|gb|AAL08437.1|AF326777_12 Tn21 integrase IntI1 [Shigella flexneri 2a] Length = 337 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] Length = 298 Score = 91.9 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSF +HLL +LR++Q +LGH+ +++TQ+YT ++ + +YD P Sbjct: 241 HPHMLRHSFGSHLLQGTQNLRAVQELLGHASIASTQVYTALDFDHLSSVYDNAFPRAK 298 >gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RHS AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ + Sbjct: 268 CHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKGRT 327 Query: 65 KK 66 ++ Sbjct: 328 EQ 329 >gi|87125131|ref|ZP_01080978.1| integron integrase [Synechococcus sp. RS9917] gi|86167451|gb|EAQ68711.1| integron integrase [Synechococcus sp. RS9917] Length = 323 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/46 (54%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + + HT RHSFATHLL G D+R+IQ +LGH + TT IYT+V ++ Sbjct: 266 AASCHTFRHSFATHLLERGQDIRTIQELLGHQDVCTTMIYTHVLNR 311 >gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRH+ AT LL G D+R +Q +LGH + TTQIYT+V+ + Sbjct: 233 TVTPHMLRHTAATELLEAGVDIRFVQRLLGHRSILTTQIYTHVSDIALRTAVRGA 287 >gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism] Length = 317 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|89147369|gb|ABD62545.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|89147522|gb|ABD62621.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|322376586|ref|ZP_08051079.1| putative integrase/recombinase XerD [Streptococcus sp. M334] gi|321282393|gb|EFX59400.1| putative integrase/recombinase XerD [Streptococcus sp. M334] Length = 280 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ +LGHS +S TQIYT+V+ + EI +P Sbjct: 215 TITPHMFRHSFATMLLDSDVDIRYIQQMLGHSSISITQIYTHVSHSKQKEILSSFNP 271 >gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 355 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + G D+RS+Q ILGHS ++TTQIYT++ +++ ++ + Sbjct: 295 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLEN 346 >gi|241992508|gb|ACS73589.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|209809323|ref|YP_002264861.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238] gi|208010885|emb|CAQ81288.1| site-specific recombinase IntIA [Aliivibrio salmonicida LFI1238] Length = 327 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFAT +L G DLR+IQ +LGHS + TTQIYT+V Sbjct: 270 KASCHTFRHSFATRVLERGADLRTIQELLGHSDIKTTQIYTHV 312 >gi|223369806|gb|ACM88772.1| integrase [uncultured bacterium] Length = 161 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+ Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161 >gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|30908738|gb|AAP37601.1| IntI [uncultured bacterium] Length = 161 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 119 PVTPHVLRHSFATHLLQAGYDIRTVQELLGHKDVQTTMIYTHV 161 >gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510] gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510] Length = 366 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DLR+IQ +LGH+ + TT IY +V S I Sbjct: 307 VHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSTHKSSI 356 >gi|89147657|gb|ABD62687.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R++Q +LGHS ++TT IYT+V Sbjct: 120 PATPHTFRHSFATHLLEDGYDIRTVQELLGHSDVTTTMIYTHV 162 >gi|60550182|gb|AAX24185.1| integrase [Xanthomonas campestris pv. campestris] Length = 327 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH G D+R++Q +LGH ++TTQIYT+V Sbjct: 265 PATCHTLRHSFATHPPEAGHDIRTVQELLGHKDVATTQIYTHV 307 >gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 330 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ +P + Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328 Query: 63 KD 64 +D Sbjct: 329 ED 330 >gi|89147528|gb|ABD62624.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+ RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 120 NGSCHSFRHSFATHLLENGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|253755098|ref|YP_003028238.1| integrase [Streptococcus suis BM407] gi|251817562|emb|CAZ55309.1| integrase [Streptococcus suis BM407] Length = 295 Score = 91.5 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 30/54 (55%), Positives = 35/54 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H RHSFAT LL N D+R IQ ILGHS +S TQIYT+V+ R EI +P Sbjct: 236 PHMFRHSFATMLLDNDVDIRYIQQILGHSSISITQIYTHVSQSRQKEILSSYNP 289 >gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992564|gb|ACS73629.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium] gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium] gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium] gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium] gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium] gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium] gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium] gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium] gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium] gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium] gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium] gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium] gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium] gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium] gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium] gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|124387997|gb|ABN10350.1| unknown orf/DNA integrase fusion protein [Pseudomonas aeruginosa] Length = 281 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 217 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 259 >gi|156138691|dbj|BAF75922.1| integron integrase [uncultured bacterium] Length = 180 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT+ Sbjct: 139 PAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYTH 180 >gi|83722825|gb|ABC41684.1| integrase [uncultured bacterium] Length = 164 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 122 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 163 >gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88] gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88] Length = 328 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ AT + +G D+RS+Q ILGH +STTQIYT+V+++++ E Sbjct: 267 TPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAVK 318 >gi|16197749|gb|AAK95987.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El Tor] Length = 362 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAH RHSFAT LL G D+R++Q +LGHS L TTQIYT+V + Sbjct: 307 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQH 352 >gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H RH AT +L NG D R IQ+ILGH +L TTQIYT V + +++ THP+ ++ Sbjct: 268 CHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLQKVHAHTHPAEKRRT 327 Query: 65 KK 66 +K Sbjct: 328 EK 329 >gi|241992522|gb|ACS73599.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|289806186|ref|ZP_06536815.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 164 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRHSFATH+L + GDLR +Q +LGH+ LSTTQIYT+++ + Sbjct: 120 VHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQ 164 >gi|89147490|gb|ABD62605.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 29/42 (69%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HTLRHSFATHLL +G DLR+IQ +LGHS + TT IYT+V Sbjct: 121 VTSHTLRHSFATHLLESGTDLRTIQELLGHSDIKTTMIYTHV 162 >gi|241992534|gb|ACS73608.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|229092872|ref|ZP_04224006.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] gi|228690494|gb|EEL44277.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-42] Length = 54 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 40/54 (74%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 LRH+FATH+L G DLR++Q +LGH LSTTQIYT+V+ +R+ +Y + HP Sbjct: 1 MLRHTFATHMLDEGADLRTVQELLGHENLSTTQIYTHVSKERLRSVYMKHHPRA 54 >gi|89147392|gb|ABD62556.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+R++Q +LGH ++TT IYT+V Sbjct: 121 ATPHTLRHSFATHLLQGGYDIRTVQELLGHENVATTMIYTHV 162 >gi|89147351|gb|ABD62536.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 120 PASCHTFRHSFATHLLDAGYDIRTVQELLGHKHVSTTMIYTHV 162 >gi|156138685|dbj|BAF75919.1| integron integrase [uncultured bacterium] Length = 180 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT+ Sbjct: 139 PAGCHTLRHSFATHLLEAGQDIRTIQELLGHSDVSTTMIYTH 180 >gi|225376010|ref|ZP_03753231.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM 16841] gi|225212165|gb|EEG94519.1| hypothetical protein ROSEINA2194_01647 [Roseburia inulinivorans DSM 16841] Length = 85 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ++ T H RHSFAT+L+ ++R IQ +LGH+ ++TTQIYT V +++ EI HP Sbjct: 13 INITPHMFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYTYVTTEKEKEILQTRHPRN 72 Query: 61 TQKDKKN 67 +N Sbjct: 73 KINIGEN 79 >gi|322376313|ref|ZP_08050806.1| integrase/recombinase XerD [Streptococcus sp. M334] gi|321282120|gb|EFX59127.1| integrase/recombinase XerD [Streptococcus sp. M334] Length = 212 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 37/57 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H RHSFAT LL + D+R IQ ILGHS +S TQIYT+V+ + EI +P Sbjct: 147 TITPHMFRHSFATMLLDSDVDIRYIQQILGHSSISVTQIYTHVSHSKQKEILSSFNP 203 >gi|89147353|gb|ABD62537.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFATHLL NG D+R++Q +LGH + TT IYT+V Sbjct: 120 TATCHTFRHSFATHLLKNGHDIRTVQELLGHKDVRTTMIYTHV 162 >gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|213025044|ref|ZP_03339491.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 74 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 32/59 (54%), Positives = 45/59 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 16 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 74 >gi|89147442|gb|ABD62581.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL G D+R+IQ +LGH+ + TT IYT+V Sbjct: 120 NVSVHTLRHSFATHLLEKGYDIRTIQELLGHANVQTTMIYTHV 162 >gi|89147636|gb|ABD62677.1| integrase [uncultured bacterium] Length = 163 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LRHSFATHLL G D+R++Q LGHS + TQIYT+V Sbjct: 120 PATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRMTQIYTHV 162 >gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.5 bits (227), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|223369854|gb|ACM88796.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162 >gi|223369808|gb|ACM88773.1| integrase [uncultured bacterium] Length = 161 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+ Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161 >gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp. X514] gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513] gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514] gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513] Length = 330 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ +P + Sbjct: 270 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 328 Query: 63 KD 64 +D Sbjct: 329 ED 330 >gi|30908748|gb|AAP37606.1| IntI [uncultured bacterium] Length = 161 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R+IQ +LGH +STT IYT+V Sbjct: 119 NASPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161 >gi|300872277|gb|ADK38966.1| IntI4 [Vibrio sp. V48(2010)] Length = 293 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T +TLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V + Q Sbjct: 240 TVTCNTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDSSASSVLSQ 293 >gi|56475445|ref|YP_157034.1| phage-related integrase [Aromatoleum aromaticum EbN1] gi|56311488|emb|CAI06133.1| phage-related integrase [Aromatoleum aromaticum EbN1] Length = 335 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFA+HLL NG D+R++Q +LGH+ + TT IYT+V ++ Sbjct: 278 VHPHTLRHSFASHLLENGSDIRTVQELLGHADVKTTMIYTHVLNR 322 >gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 318 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 37/52 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++H LRH+FAT LL G DLR++Q +LGHS + TT +YT+V ++ + D+ Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTNREKEKAMDK 308 >gi|241992614|gb|ACS73664.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 323 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH LRH+ AT L G D+RSIQ++LGH ++TTQIYT+V+ ++ +I + +P K Sbjct: 265 SAHKLRHTCATLLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIRDIV-KLNPLNKHK 323 >gi|89147584|gb|ABD62651.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 120 PATCHTLRHSFATHLLENGSDIRTVQELLGHKDVSTTMIYTHV 162 >gi|332299940|ref|YP_004441861.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 407 Score = 91.1 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 AHTLRHSFAT +L+ G + SI+ +LGHS L TT YT+ + +++ ++Y HP + Sbjct: 250 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHPRAQSQ 307 >gi|119774492|ref|YP_927232.1| phage integrase family site specific recombinase [Shewanella amazonensis SB2B] gi|119766992|gb|ABL99562.1| site-specific recombinase, phage integrase family [Shewanella amazonensis SB2B] Length = 318 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 33/47 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V + Sbjct: 261 KVNCHTFRHSFATHLLQAGYDIRTVQELLGHNDVKTTQIYTHVLGQH 307 >gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM 13528] gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM 13528] Length = 328 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +++ E + ++P + Sbjct: 268 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLREAVN-SNPLSNE 326 Query: 63 KD 64 ++ Sbjct: 327 EE 328 >gi|223369852|gb|ACM88795.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|223369844|gb|ACM88791.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFATHLL G D+R+IQ +LGH +STT IYT+V Sbjct: 121 VSSHTFRHSFATHLLQRGQDIRTIQDLLGHKDVSTTMIYTHV 162 >gi|223369846|gb|ACM88792.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHL+ +G D+R++Q +LGH+ + TT IYT+V Sbjct: 121 ATCHTFRHSFATHLIEDGYDIRTVQELLGHADVRTTMIYTHV 162 >gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 318 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++H LRH+FAT LL G DLR++Q +LGHS + TT +YT+V + + D+ Sbjct: 257 SSHKLRHTFATMLLRKGADLRTVQELLGHSSIQTTTVYTHVTDREKEKAMDK 308 >gi|223972389|dbj|BAH23420.1| site-specific tyrosine recombinase [Vibrio cholerae O1 biovar El tor] Length = 361 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAH RHSFAT LL G D+R++Q +LGHS L TTQIYT+V + Sbjct: 306 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQH 351 >gi|94442264|dbj|BAE93631.1| integron integrase [uncultured bacterium] Length = 162 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|89147402|gb|ABD62561.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 35/41 (85%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL++G D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFATHLLADGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|223369824|gb|ACM88781.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 NASCHTLRHSFATHLLESGSDIRTVQELLGHNDVRTTMIYTHV 162 >gi|89147416|gb|ABD62568.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEGGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|223369838|gb|ACM88788.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|89147470|gb|ABD62595.1| integrase [uncultured bacterium] Length = 163 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 30/42 (71%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R+IQ +LGH+ LSTT IYT+V Sbjct: 121 ITPHTLRHSFATHLLQNGTDIRTIQELLGHNDLSTTMIYTHV 162 >gi|32474109|ref|NP_867103.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444646|emb|CAD74648.1| putative integrase/recombinase [Rhodopirellula baltica SH 1] Length = 347 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V + + P Sbjct: 168 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV---ASPLDQ 224 Query: 62 QKDK 65 +D+ Sbjct: 225 LRDE 228 >gi|241992559|gb|ACS73625.1| IntI1 [uncultured bacterium] Length = 315 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus C3-41] gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 320 Score = 91.1 bits (226), Expect = 5e-17, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 37/52 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + G D+RS+Q ILGHS ++TTQIYT++ +++ ++ + Sbjct: 260 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQLQQVLEN 311 >gi|223369812|gb|ACM88775.1| integrase [uncultured bacterium] Length = 163 Score = 90.7 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R++Q +LGH+ + TT IYT+V Sbjct: 120 PGSVHTLRHSFATHLLESGYDIRTVQELLGHADVKTTMIYTHV 162 >gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36] Length = 366 Score = 90.7 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DLR+IQ +LGH+ + TT IY +V S I Sbjct: 307 VHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSAHKSSI 356 >gi|227461196|gb|ACP39543.1| putative integron integrase [uncultured microorganism] Length = 319 Score = 90.7 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS ATHLL +G D+R+IQ +LGH+ +STT IYT+V Sbjct: 278 ATCHTLRHSLATHLLESGSDIRTIQELLGHADVSTTMIYTHV 319 >gi|70905575|gb|AAZ14841.1| orf/DNA integrase fusion protein [Achromobacter denitrificans] Length = 287 Score = 90.7 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 223 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 265 >gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9] gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9] gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 328 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ +P + Sbjct: 269 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNK-NPLSQK 327 Query: 63 K 63 + Sbjct: 328 E 328 >gi|223369850|gb|ACM88794.1| integrase [uncultured bacterium] Length = 163 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGHS L+TT IYT+V Sbjct: 121 ATCHTFRHSFATHLLEQGSDIRTVQELLGHSDLATTMIYTHV 162 >gi|94499085|ref|ZP_01305623.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] gi|94428717|gb|EAT13689.1| site-specific recombinase, phage integrase family protein [Oceanobacter sp. RED65] Length = 319 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 33/46 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFAT LL G D+R++Q +LGH +STTQIYT+V + Sbjct: 263 ITCHTFRHSFATELLRAGRDIRTVQELLGHKDVSTTQIYTHVVGQH 308 >gi|94442262|dbj|BAE93630.1| integron integrase [uncultured bacterium] Length = 162 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|89092929|ref|ZP_01165881.1| site-specific recombinase [Oceanospirillum sp. MED92] gi|89082954|gb|EAR62174.1| site-specific recombinase [Oceanospirillum sp. MED92] Length = 323 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRHSFATHLL G D+R++Q LGHS + TT+IYT+V ++ Sbjct: 267 ATCHSLRHSFATHLLERGADIRTVQEQLGHSDVRTTEIYTHVLNR 311 >gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO] gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 286 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FATHLL G ++R +Q +LGHS LSTT +Y +V + + ++ Sbjct: 229 IHPHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEKFDAINK 281 >gi|89147492|gb|ABD62606.1| integrase [uncultured bacterium] Length = 163 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG D+R++Q +LG +STT IYT+V Sbjct: 120 PASTHTLRHSFATHLLENGYDIRTVQELLGRKDVSTTMIYTHV 162 >gi|300872283|gb|ADK38969.1| IntI4 [Vibrio sp. V84(2010)] Length = 290 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R+++ LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 282 >gi|89147476|gb|ABD62598.1| integrase [uncultured bacterium] Length = 163 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 30/43 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RH FATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 120 KVGPHTFRHCFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|229527749|ref|ZP_04417140.1| integron integrase IntI4 [Vibrio cholerae 12129(1)] gi|229334111|gb|EEN99596.1| integron integrase IntI4 [Vibrio cholerae 12129(1)] Length = 320 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+ Sbjct: 263 TVTCHTLRHSFATHLLDVGADIRTVQEQLGHTDVKTTQIYTH 304 >gi|94442296|dbj|BAE93647.1| integron integrase [uncultured bacterium] Length = 162 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRHSFATHL+ +G D+R++Q +LGH +STT IYT+V Sbjct: 119 NASCHSLRHSFATHLIESGTDIRTVQELLGHKDVSTTMIYTHV 161 >gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 344 Score = 90.7 bits (225), Expect = 6e-17, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 37/55 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H RHS AT +L G D R IQ+ILGH +L TTQIYT V + +++++THP+ Sbjct: 268 CHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVAIGHLKQVHEKTHPA 322 >gi|89147338|gb|ABD62531.1| integrase [uncultured bacterium] Length = 163 Score = 90.7 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATH L G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHSLQAGTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|223369787|gb|ACM88763.1| integrase [uncultured bacterium] Length = 163 Score = 90.7 bits (225), Expect = 7e-17, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATH L G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHPLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|308274017|emb|CBX30616.1| hypothetical protein N47_E41280 [uncultured Desulfobacterium sp.] Length = 165 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 36/46 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + ++H RHSFATHLL +G D+R+IQ +LGH +STT IYT+V +K Sbjct: 105 NVSSHAFRHSFATHLLEDGYDIRTIQELLGHKDVSTTMIYTHVLNK 150 >gi|89147444|gb|ABD62582.1| integrase [uncultured bacterium] Length = 163 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162 >gi|91224344|ref|ZP_01259606.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01] gi|91190686|gb|EAS76953.1| site-specific recombinase IntIA [Vibrio alginolyticus 12G01] Length = 308 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT---NVNSKRMMEIYD 54 + T HTLRHSFATHLL +G D+R++Q LGH+ + TTQIYT +VN K + + D Sbjct: 251 TVTCHTLRHSFATHLLESGADIRTVQEQLGHTDVKTTQIYTAAHHVNHKNVPSLVD 306 >gi|89147518|gb|ABD62619.1| integrase [uncultured bacterium] Length = 163 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFAT LL G D+R++Q +LGH+ +STT IYT+V Sbjct: 120 PVSVHTLRHSFATRLLHAGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|258592425|emb|CBE68734.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 89 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL G D+R++Q +LGHS + TT +YT+V ++ Sbjct: 33 ATCHTFRHSFATHLLEGGYDIRTVQELLGHSDVKTTMMYTHVLNR 77 >gi|188526761|gb|ACD62262.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PVTPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|183220599|ref|YP_001838595.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910707|ref|YP_001962262.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775383|gb|ABZ93684.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779021|gb|ABZ97319.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 298 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL +G L IQ +LGH+ + +T IY +V+ +++I Sbjct: 219 ATVHTLRHSFATHLLEDGYSLVYIQKLLGHADIKSTMIYLHVSPDSLLQI 268 >gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae CWL029] gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae J138] gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae AR39] gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae TW-183] gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila pneumoniae AR39] gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138] gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae TW-183] Length = 312 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K + + + HP Sbjct: 255 ITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHPHA 312 >gi|194733804|ref|YP_002112919.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709306|gb|ACF88529.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 159 Score = 90.3 bits (224), Expect = 7e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 95 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 137 >gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DLR+IQ +LGH+ + TT IY +V S I Sbjct: 309 VHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLHVTSAHKSSI 358 >gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] Length = 413 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 AHTLRHSFAT +L+ G + SI+ +LGHS L TT YT+ + +++ ++Y HP + Sbjct: 256 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHPRAQSQ 313 >gi|300872291|gb|ADK38973.1| IntI4 [Vibrio sp. V91(2010)] Length = 299 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R+++ LGH+ + TTQIYT+V Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVREQLGHTDVKTTQIYTHV 288 >gi|223369802|gb|ACM88770.1| integrase [uncultured bacterium] Length = 163 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+R++Q +LGH+ + TQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKPTQIYTHV 162 >gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH] gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH] Length = 269 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFAT++L NG + + +LGH +STTQIYT +++ ++ Y + HP Sbjct: 209 IHVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKLSNSLKLQNYLKAHP 266 >gi|153822305|ref|ZP_01974972.1| site-specific tyrosine recombinase [Vibrio cholerae B33] gi|229508697|ref|ZP_04398190.1| integron integrase [Vibrio cholerae B33] gi|229608748|ref|YP_002879396.1| integron integrase [Vibrio cholerae MJ-1236] gi|255743891|ref|ZP_05417847.1| integron integrase [Vibrio cholera CIRS 101] gi|126520201|gb|EAZ77424.1| site-specific tyrosine recombinase [Vibrio cholerae B33] gi|229354221|gb|EEO19151.1| integron integrase [Vibrio cholerae B33] gi|229371403|gb|ACQ61826.1| integron integrase [Vibrio cholerae MJ-1236] gi|255738522|gb|EET93911.1| integron integrase [Vibrio cholera CIRS 101] Length = 319 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAH RHSFAT LL G D+R++Q +LGHS L TTQIYT+V + Sbjct: 264 VTAHIFRHSFATQLLKAGTDIRTVQELLGHSDLKTTQIYTHVIGQH 309 >gi|87300841|ref|ZP_01083683.1| integron integrase [Synechococcus sp. WH 5701] gi|87284712|gb|EAQ76664.1| integron integrase [Synechococcus sp. WH 5701] Length = 278 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HT RHSFATHLL G D+R+IQ +LGHS + TT IYT V ++ Sbjct: 214 PATCHTFRHSFATHLLERGQDIRTIQGLLGHSDVKTTMIYTQVLNR 259 >gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae LPCoLN] Length = 312 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 39/58 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HT+RH+ ATH L +G DL++IQ++LGHS L TT +YT V+ K + + + HP Sbjct: 255 ITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEAHPHA 312 >gi|223369820|gb|ACM88779.1| integrase [uncultured bacterium] Length = 163 Score = 90.3 bits (224), Expect = 8e-17, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT RHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 121 VTSHTFRHSFATQLLESGYDIRTVQELLGHSDVSTTMIYTHV 162 >gi|301057343|ref|ZP_07198461.1| integron integrase [delta proteobacterium NaphS2] gi|300448573|gb|EFK12220.1| integron integrase [delta proteobacterium NaphS2] Length = 326 Score = 90.3 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFATHLL G D+R+IQ++LGHS LSTT IYT+V Sbjct: 268 ISSHTFRHSFATHLLERGTDIRTIQTLLGHSDLSTTMIYTHV 309 >gi|257093411|ref|YP_003167052.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045935|gb|ACV35123.1| integron integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 340 Score = 90.3 bits (224), Expect = 9e-17, Method: Composition-based stats. Identities = 27/44 (61%), Positives = 33/44 (75%), Gaps = 1/44 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSIL-GHSRLSTTQIYTNV 44 T HTLRHSFAT LL G D+R++Q +L GHS +STT IYT+V Sbjct: 281 PATPHTLRHSFATSLLETGYDIRTVQELLVGHSDVSTTMIYTHV 324 >gi|332977095|gb|EGK13899.1| integrase-recombinase [Desmospora sp. 8437] Length = 330 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 27/54 (50%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H LRH+ AT LLSNG +LR +Q ILGHS + TTQIYT+V + D+ Sbjct: 272 NISPHKLRHTLATLLLSNGENLRVVQEILGHSSIQTTQIYTHVIDSEKDDALDR 325 >gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 41/64 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + RH+ AT +L NG DLR IQ++LGH + +TQIYT V+ K + ++ THP+ + Sbjct: 276 SCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQAVHASTHPAEREA 335 Query: 64 DKKN 67 D ++ Sbjct: 336 DSEH 339 >gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] Length = 312 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 40/60 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T HT+RH+ ATH L NG DL++IQ++LGHS L TT IYT V+ K ++ +HP Sbjct: 253 NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQVSIKLKKHTHETSHPLGK 312 >gi|154000952|gb|ABS57044.1| integrase [uncultured bacterium] Length = 158 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016] gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +R+ E Sbjct: 295 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIK 346 >gi|170728630|ref|YP_001762656.1| integron integrase [Shewanella woodyi ATCC 51908] gi|169813977|gb|ACA88561.1| integron integrase [Shewanella woodyi ATCC 51908] Length = 319 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 34/47 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HT RHSFATHLL G D+R++Q +LGH+ L+TT+IYT+V + Sbjct: 262 KVNCHTFRHSFATHLLQTGTDIRTVQELLGHNDLNTTKIYTHVLGQH 308 >gi|156138689|dbj|BAF75921.1| integron integrase [uncultured bacterium] Length = 180 Score = 89.9 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 32/42 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HTLRHSFATHLL G D+R+IQ +LGHS +STT IYT+ Sbjct: 139 PAGCHTLRHSFATHLLEVGQDIRTIQELLGHSDVSTTMIYTH 180 >gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] Length = 383 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ +I Sbjct: 324 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAHKAKI 373 >gi|188526792|gb|ACD62277.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens ATCC 13124] gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 450 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E +T+P Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 449 Query: 63 K 63 K Sbjct: 450 K 450 >gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens str. 13] gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 450 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E +T+P Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 449 Query: 63 K 63 K Sbjct: 450 K 450 >gi|171915255|ref|ZP_02930725.1| integron integrase [Verrucomicrobium spinosum DSM 4136] Length = 260 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 34/45 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 TAHT+RHSFATHLL G D+RS+Q +LGH+ + TT+IYT + Sbjct: 203 KVTAHTMRHSFATHLLLRGVDIRSVQELLGHADVRTTEIYTQLAR 247 >gi|254422709|ref|ZP_05036427.1| integron integrase subfamily [Synechococcus sp. PCC 7335] gi|196190198|gb|EDX85162.1| integron integrase subfamily [Synechococcus sp. PCC 7335] Length = 302 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V +K Sbjct: 246 CHTLRHSFATHLLEDGYDIRTVQELLGHKDVKTTMIYTHVLNK 288 >gi|83722819|gb|ABC41681.1| integrase [uncultured bacterium] Length = 163 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 29/43 (67%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATHLL G DLR+IQ +LGH ++TTQIYT+V Sbjct: 120 PLSAHTLRHSFATHLLEAGHDLRTIQELLGHKDIATTQIYTHV 162 >gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046] Length = 313 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 37/54 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + +G D+R++Q ILGHS ++TTQIYT++ +++ E+ Sbjct: 254 KLTPHKLRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQIQEVLKN 307 >gi|300872293|gb|ADK38974.1| IntI4 [Vibrio sp. V92(2010)] Length = 296 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++ LGH+ + TTQIYT+V Sbjct: 246 TVTCHTLRHSFATHLLEVGADIRTVHEQLGHTDVKTTQIYTHV 288 >gi|262274250|ref|ZP_06052061.1| integron integrase IntI4 [Grimontia hollisae CIP 101886] gi|262220813|gb|EEY72127.1| integron integrase IntI4 [Grimontia hollisae CIP 101886] Length = 320 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q+ LGHS + TTQ+YT++ Sbjct: 264 VTPHTLRHSFATHLLQSGADIRTVQAQLGHSDVRTTQVYTHI 305 >gi|32471146|ref|NP_864139.1| integrase [Rhodopirellula baltica SH 1] gi|32396848|emb|CAD71816.1| integrase [Rhodopirellula baltica SH 1] Length = 292 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H+ RHSFATHL+ +G D+R IQ +LGH+ L TT +YT V + + P Sbjct: 113 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATAV---ASPLDQ 169 Query: 62 QKDK 65 +D+ Sbjct: 170 LRDE 173 >gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 311 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 35/54 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA+ L D++ +Q +LGH+ +STTQIYT+V+++ D+ Sbjct: 254 KITPHKLRHTFASMLYRQTKDIKVLQDLLGHANISTTQIYTHVDTEEKKSAIDE 307 >gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium] Length = 315 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS + TT IYT+V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMIYTHV 315 >gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 89.9 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 35/49 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ + Sbjct: 212 VTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSNGLIRR 260 >gi|89147422|gb|ABD62571.1| integrase [uncultured bacterium] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R++Q +LGH + TT IYT+V Sbjct: 121 ISCHTLRHSFATHLLQQGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 290 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTNLNTNLLSLISKSKIKEVYNKFHPRA 290 >gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 283 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 35/51 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRHSFATHLL G DLR IQ +LGH TT+IYT++ ++ + I Sbjct: 222 KVSVHSLRHSFATHLLEAGTDLRYIQKLLGHESSKTTEIYTHITTQNISRI 272 >gi|223369796|gb|ACM88767.1| integrase [uncultured bacterium] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFATHLLQAERDIRTVQELLGHTDVKTTQIYTHV 162 >gi|78776978|ref|YP_393293.1| integron integrase [Sulfurimonas denitrificans DSM 1251] gi|78497518|gb|ABB44058.1| Integron integrase [Sulfurimonas denitrificans DSM 1251] Length = 320 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 33/45 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+H RHS+ATHLL G DLRSIQ +LGH + TT IYT+V S+ Sbjct: 264 VTSHIFRHSYATHLLQAGIDLRSIQELLGHKSVETTMIYTHVVSE 308 >gi|30908742|gb|AAP37603.1| IntI [uncultured bacterium] Length = 161 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ +LGH +STT IYT+V Sbjct: 119 NAGPHTLRHSFATHLLQDGYDIRTIQDLLGHKEISTTMIYTHV 161 >gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] Length = 290 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290 >gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] Length = 290 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290 >gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 285 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 35/49 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL G D+R IQ +LGH+ LSTT YT V++ + + Sbjct: 221 VTVHTLRHSFATHLLEAGTDIRIIQVLLGHNNLSTTARYTQVSNAMIAK 269 >gi|254443000|ref|ZP_05056476.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] gi|198257308|gb|EDY81616.1| integron integrase subfamily, putative [Verrucomicrobiae bacterium DG1235] Length = 485 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 5/52 (9%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++H LRHSFATHLL +G +LR++Q ++GH + TTQ+Y + +M+ Y+ Sbjct: 422 VSSHALRHSFATHLLDSGINLRTLQELMGHKDIKTTQVYLH-----LMKTYE 468 >gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM 555] gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555] Length = 328 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +R+ E Sbjct: 268 TPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIK 319 >gi|254431040|ref|ZP_05044743.1| integron integrase [Cyanobium sp. PCC 7001] gi|197625493|gb|EDY38052.1| integron integrase [Cyanobium sp. PCC 7001] Length = 323 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 34/46 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T +LRHSFATHLL G D+R+IQ +LGHS L TT IYT+V ++ Sbjct: 266 PATCQSLRHSFATHLLERGQDIRTIQELLGHSDLKTTMIYTHVLNR 311 >gi|89147466|gb|ABD62593.1| integrase [uncultured bacterium] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 29/42 (69%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+RSIQ +LGH+ L TT IYT+V Sbjct: 121 VTTHTLRHSFATHLLEAGYDIRSIQELLGHADLKTTMIYTHV 162 >gi|188526769|gb|ACD62266.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238] gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 30/52 (57%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K + Sbjct: 245 PVTLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATKTIRNTV 296 >gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 290 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290 >gi|330448031|ref|ZP_08311679.1| integron integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492222|dbj|GAA06176.1| integron integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 321 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RHSFAT LL NG D+R++Q +LGH+ + TT+IYT+V R Sbjct: 263 VTAHTFRHSFATRLLENGTDIRTVQELLGHTDIRTTEIYTHVVGNR 308 >gi|154000908|gb|ABS57022.1| integrase [uncultured bacterium] gi|154000918|gb|ABS57027.1| integrase [uncultured bacterium] gi|188526759|gb|ACD62261.1| IntI1 integrase [uncultured bacterium] gi|188526784|gb|ACD62273.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147588|gb|ABD62653.1| integrase [uncultured bacterium] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 35/43 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATH++ G D+R++Q +LGH ++TTQIYT+V Sbjct: 120 PVSAHTLRHSFATHIIEAGYDIRTVQELLGHKDVATTQIYTHV 162 >gi|188526775|gb|ACD62269.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000914|gb|ABS57025.1| integrase [uncultured bacterium] gi|154000916|gb|ABS57026.1| integrase [uncultured bacterium] gi|154000922|gb|ABS57029.1| integrase [uncultured bacterium] gi|154000936|gb|ABS57036.1| integrase [uncultured bacterium] Length = 158 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHS+A+ LL+ G + + +LGHS ++TTQIYT + S + Y++ HP Sbjct: 215 LKVTPHQLRHSYASSLLNGGAPIVDVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272 >gi|214027192|gb|ACJ63266.1| IntI1 integrase [Escherichia coli] Length = 337 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY +V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYXHV 315 >gi|188526765|gb|ACD62264.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147679|gb|ABD62698.1| integrase [uncultured bacterium] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G D+R++Q ++GH + TT IYT+V Sbjct: 120 PVTCHMLRHSFATHLLEQGCDIRTVQQLMGHKHVETTMIYTHV 162 >gi|89147347|gb|ABD62534.1| integrase [uncultured bacterium] Length = 163 Score = 89.6 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 120 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 162 >gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083] gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083] Length = 295 Score = 89.6 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/49 (61%), Positives = 36/49 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K + Sbjct: 225 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVATKTIR 273 >gi|30908746|gb|AAP37605.1| IntI [uncultured bacterium] Length = 161 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS ATHLL +G D+R++Q +LGHS + TT IYT+V Sbjct: 120 VSCHTLRHSSATHLLEDGYDIRTVQELLGHSSVETTMIYTHV 161 >gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] Length = 290 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290 >gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] Length = 290 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +TLR SFA H+L NG D+R++Q +LG+ T + + ++ ++ E+Y++ HP Sbjct: 231 FPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQTDLNTNLLSLISKSKIKEVYNKFHPRA 290 >gi|254785845|ref|YP_003073274.1| integron integrase [Teredinibacter turnerae T7901] gi|237686300|gb|ACR13564.1| integron integrase [Teredinibacter turnerae T7901] Length = 355 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH FAT+LL +G D+R+IQ +LGH LSTTQIYT+V Sbjct: 271 KASCHTFRHCFATNLLRSGADIRNIQELLGHKDLSTTQIYTHV 313 >gi|188526763|gb|ACD62263.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] Length = 403 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 AHTLRHSFAT +L+ G + SI+ +LGHS L TT YT+ + +++ ++Y HP + Sbjct: 246 AHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLY-HAHPRAQSQ 303 >gi|330832570|ref|YP_004401395.1| integrase family protein [Streptococcus suis ST3] gi|329306793|gb|AEB81209.1| integrase family protein [Streptococcus suis ST3] Length = 298 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+ + +EI + +P Sbjct: 233 ITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 288 >gi|223369804|gb|ACM88771.1| integrase [uncultured bacterium] Length = 160 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT Sbjct: 121 VTCHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYT 160 >gi|223369790|gb|ACM88764.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSF THLL G D+R++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTFRHSFTTHLLQAGRDIRTVQELLGHTDVKTTQIYTHV 162 >gi|223369848|gb|ACM88793.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL D+R++Q +LGHS +STT IYT+V Sbjct: 121 VSVHTLRHSFATHLLQPNTDIRTVQELLGHSDVSTTMIYTHV 162 >gi|89147669|gb|ABD62693.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHL+ +G D+R++Q +LGH + TT IYT+V Sbjct: 120 PGSCHTFRHSFATHLIEDGYDIRTVQELLGHKDVKTTMIYTHV 162 >gi|154000910|gb|ABS57023.1| integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 268 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHSFAT++L G + + +LGH +STTQIYT +++ ++ Y + HP Sbjct: 209 IHATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLKLKNYLKAHP 266 >gi|188526757|gb|ACD62260.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|156974288|ref|YP_001445195.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156525882|gb|ABU70968.1| hypothetical protein VIBHAR_02003 [Vibrio harveyi ATCC BAA-1116] Length = 318 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT V Sbjct: 263 SVTCHTLRHSFATHLLETGADIRTVQEQLGHTDVKTTQIYTAV 305 >gi|89147514|gb|ABD62617.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHT RHSFATHLL G D+R+IQS+LGH L TT IYT+V Sbjct: 120 KVSAHTFRHSFATHLLQRGTDIRTIQSLLGHRDLETTMIYTHV 162 >gi|89147614|gb|ABD62666.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+ RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 120 NGSCHSFRHSFATHLLEDGYDIRTVQELLGHKDVRTTMIYTHV 162 >gi|89147446|gb|ABD62583.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/43 (65%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL NG DLR IQ +LGH+ + TT IYT+V Sbjct: 120 PVSVHTLRHSFATHLLLNGVDLRQIQELLGHANVETTMIYTHV 162 >gi|89147659|gb|ABD62688.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTVQELLGHRDVRTTMIYTHV 162 >gi|89147681|gb|ABD62699.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL +G D+R+IQ +LGH + TT IYT+V Sbjct: 121 ASCHTFRHSFATHLLESGYDIRTIQKLLGHRDVRTTMIYTHV 162 >gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238] gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238] Length = 319 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL +G D+R IQ++LGH++L+TT +Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLESGVDIRVIQALLGHAKLTTTALYASVATGMIAAV 300 >gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 35/49 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ + Sbjct: 212 VTVHTLRHSFATHLLESGTDIRIIQVLLGHANLSTTARYTQVSNGLIRR 260 >gi|241992584|gb|ACS73643.1| IntI1 [uncultured bacterium] Length = 315 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT V Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTQV 315 >gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ +I Sbjct: 309 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAYKAKI 358 >gi|94442306|dbj|BAE93652.1| integron integrase [uncultured bacterium] Length = 238 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL +G D+R+IQ +LG + + TT IYT+V Sbjct: 196 VTCHTFRHSFATHLLESGSDIRTIQELLGRADVRTTMIYTHV 237 >gi|89147334|gb|ABD62529.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH FATHLL G D+R++Q +LGH + TTQIYT+V Sbjct: 121 VTPHIFRHCFATHLLEAGYDIRTVQELLGHKDVKTTQIYTHV 162 >gi|239817469|ref|YP_002946379.1| integrase family protein [Variovorax paradoxus S110] gi|239804046|gb|ACS21113.1| integrase family protein [Variovorax paradoxus S110] Length = 290 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL D+R IQ +LGH +L TT +YT+V ++ + E+ Sbjct: 232 VTMHTLRHSFATHLLEQKVDIRVIQVMLGHKKLETTSVYTHVATEVLREVV 282 >gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238] gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238] Length = 202 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 132 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 182 >gi|183219889|ref|YP_001837885.1| putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910016|ref|YP_001961571.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774692|gb|ABZ92993.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778311|gb|ABZ96609.1| Putative integrase/recombinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 428 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 30/50 (60%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH+FATHLL G DLR IQ++LGHS + TTQIYT V R+ I Sbjct: 363 VTFHSLRHAFATHLLELGTDLRMIQTLLGHSSVRTTQIYTKVARSRLENI 412 >gi|149377412|ref|ZP_01895156.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter algicola DG893] gi|149358336|gb|EDM46814.1| integrase/recombinase (XerC/CodV family) protein [Marinobacter algicola DG893] Length = 330 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 33/42 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFAT LL +G D+R+IQ +LGH+ + TT+IYT+V K Sbjct: 276 HTFRHSFATRLLESGYDIRTIQKLLGHADVRTTEIYTHVVRK 317 >gi|154000944|gb|ABS57040.1| integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000926|gb|ABS57031.1| integrase [uncultured bacterium] gi|154000971|gb|ABS57053.1| integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|148264909|ref|YP_001231615.1| integron integrase [Geobacter uraniireducens Rf4] gi|146398409|gb|ABQ27042.1| integron integrase [Geobacter uraniireducens Rf4] Length = 452 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 29/41 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+H RHSFATHLL D+R IQ +LGH+ L TT IYT+ Sbjct: 396 VTSHIFRHSFATHLLQANYDIRVIQKLLGHASLKTTMIYTH 436 >gi|89147646|gb|ABD62682.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFAT LL G D+R++Q +LGH + TT IYT+V Sbjct: 121 VTCHTFRHSFATQLLEAGYDIRTVQELLGHQDVKTTMIYTHV 162 >gi|188526771|gb|ACD62267.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000967|gb|ABS57051.1| integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|60256918|gb|AAX14941.1| integrase [Xanthomonas campestris pv. oryzae] Length = 315 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G D+ ++Q +LGH ++T QIY +V Sbjct: 265 PATCHTLRHSFATHLLEAGHDIATVQELLGHKDVTTKQIYAHV 307 >gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] Length = 328 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT+RH+FAT L+NG D+ ++Q++LGH +TTQIY + ++ E + + Sbjct: 271 KISPHTMRHTFATLTLNNGADIAAVQALLGHEDPATTQIYAQLTEEKKRETHKKY 325 >gi|300872285|gb|ADK38970.1| IntI4 [Vibrio sp. V87(2010)] Length = 290 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFAT+LL G D+R++ +LGH+ + TTQIYT+V Sbjct: 240 TVTCHTLRHSFATNLLEVGADIRTVHELLGHTDVKTTQIYTHV 282 >gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 270 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H LRHSFA+ LL+ + + +LGHS ++TTQIYT + S + Y+ HP Sbjct: 206 LKVSPHQLRHSFASQLLNGNAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNMAHPLC 265 Query: 61 TQKD 64 K+ Sbjct: 266 GVKE 269 >gi|215407992|emb|CAS02323.1| integron integrase [uncultured bacterium] gi|215407996|emb|CAS02325.1| integron integrase [uncultured bacterium] gi|215407998|emb|CAS02326.1| integron integrase [uncultured bacterium] gi|215408002|emb|CAS02328.1| integron integrase [uncultured bacterium] gi|215408010|emb|CAS02332.1| integron integrase [uncultured bacterium] gi|215408020|emb|CAS02337.1| integron integrase [uncultured bacterium] gi|215408022|emb|CAS02338.1| integron integrase [uncultured bacterium] gi|215408026|emb|CAS02340.1| integron integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] Length = 368 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ +I Sbjct: 309 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAYKAKI 358 >gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 288 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 38/60 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T LR SFA HLL NG D+RS+Q +LG+ +++ ++ + ++ ++ E+Y ++HP Sbjct: 229 FDITPSILRRSFAKHLLENGADIRSVQEMLGYKSVNSNELISLISKSKIKEVYKKSHPRA 288 >gi|215408008|emb|CAS02331.1| integron integrase [uncultured bacterium] Length = 159 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000898|gb|ABS57017.1| integrase [uncultured bacterium] gi|154000900|gb|ABS57018.1| integrase [uncultured bacterium] gi|154000902|gb|ABS57019.1| integrase [uncultured bacterium] gi|154000906|gb|ABS57021.1| integrase [uncultured bacterium] gi|154000912|gb|ABS57024.1| integrase [uncultured bacterium] gi|154000920|gb|ABS57028.1| integrase [uncultured bacterium] gi|154000924|gb|ABS57030.1| integrase [uncultured bacterium] gi|154000928|gb|ABS57032.1| integrase [uncultured bacterium] gi|154000934|gb|ABS57035.1| integrase [uncultured bacterium] gi|154000938|gb|ABS57037.1| integrase [uncultured bacterium] gi|154000942|gb|ABS57039.1| integrase [uncultured bacterium] gi|154000946|gb|ABS57041.1| integrase [uncultured bacterium] gi|154000948|gb|ABS57042.1| integrase [uncultured bacterium] gi|154000950|gb|ABS57043.1| integrase [uncultured bacterium] gi|154000954|gb|ABS57045.1| integrase [uncultured bacterium] gi|154000956|gb|ABS57046.1| integrase [uncultured bacterium] gi|154000960|gb|ABS57048.1| integrase [uncultured bacterium] gi|154000963|gb|ABS57049.1| integrase [uncultured bacterium] gi|154000965|gb|ABS57050.1| integrase [uncultured bacterium] gi|154000969|gb|ABS57052.1| integrase [uncultured bacterium] gi|188526755|gb|ACD62259.1| IntI1 integrase [uncultured bacterium] gi|188526767|gb|ACD62265.1| IntI1 integrase [uncultured bacterium] gi|188526786|gb|ACD62274.1| IntI1 integrase [uncultured bacterium] gi|188526788|gb|ACD62275.1| IntI1 integrase [uncultured bacterium] gi|188526794|gb|ACD62278.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|167749654|ref|ZP_02421781.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] gi|167657407|gb|EDS01537.1| hypothetical protein EUBSIR_00612 [Eubacterium siraeum DSM 15702] Length = 357 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT------ 56 + H LRH+ AT + NG D+R ++ +LGH L+TTQIYT+V + ++ + + Sbjct: 281 ISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIK 340 Query: 57 ----HPSITQKDKKN 67 P + Q + KN Sbjct: 341 NDLPEPDLKQNEDKN 355 >gi|89147418|gb|ABD62569.1| integrase [uncultured bacterium] Length = 163 Score = 89.2 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 33/41 (80%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL G D+R++Q +LGH+ +STT IYT+V Sbjct: 122 SCHVLRHSFATHLLEAGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|154000940|gb|ABS57038.1| integrase [uncultured bacterium] Length = 158 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|330834471|ref|YP_004409199.1| phage integrase family protein [Metallosphaera cuprina Ar-4] gi|329566610|gb|AEB94715.1| phage integrase family protein [Metallosphaera cuprina Ar-4] Length = 284 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT+ + G L +Q +LGH + TTQIYT++ + + +Y Sbjct: 230 PHILRHTFATNAIKKGAPLPVVQRLLGHKDIKTTQIYTHLMTDDLKRVYR 279 >gi|264678575|ref|YP_003278482.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262209088|gb|ACY33186.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 333 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFA LL +G D+R++Q +LGHS +STT IYT++ Sbjct: 273 PATPHTLRHSFAAALLRSGYDIRTVQDLLGHSDISTTMIYTHM 315 >gi|87307065|ref|ZP_01089211.1| Integron integrase [Blastopirellula marina DSM 3645] gi|87290438|gb|EAQ82326.1| Integron integrase [Blastopirellula marina DSM 3645] Length = 354 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 36/45 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+HT RHSFATHLL++G D+R++Q +LGH + TT IYT+V ++ Sbjct: 292 VTSHTFRHSFATHLLADGYDIRTVQELLGHKDVRTTMIYTHVLNR 336 >gi|188526782|gb|ACD62272.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|223369810|gb|ACM88774.1| integrase [uncultured bacterium] Length = 161 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 31/41 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+ Sbjct: 121 VACHTFRHSFATHLLQAGRDIRTVQELLGHTDVKTTQIYTH 161 >gi|332292898|ref|YP_004431507.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH++ATHL+ +G DLR IQ +LGHS + TT IYT+V ++ + ++ Sbjct: 217 KVTLHSLRHAYATHLMDSGTDLRMIQELLGHSDIKTTMIYTHVTTRSIQQV 267 >gi|315122698|ref|YP_004063187.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496100|gb|ADR52699.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 324 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 42/56 (75%), Positives = 53/56 (94%) Query: 11 SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66 SFATH+LSNGGDLRSIQS+LGH+RLS+TQ+YTNV+SKR++EIYDQ+HP +T +KK Sbjct: 265 SFATHILSNGGDLRSIQSVLGHARLSSTQVYTNVDSKRIIEIYDQSHPIVTNNNKK 320 >gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str. Chicago] Length = 306 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 43/65 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T HT RHS+ATHLL+ G DL S+Q +LGH+ ++TTQ+YT+V + ++ + S Sbjct: 241 VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSE 300 Query: 61 TQKDK 65 +D+ Sbjct: 301 GLRDE 305 >gi|188526773|gb|ACD62268.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter tengcongensis MB4] gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 353 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ Sbjct: 295 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVNK 347 >gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T HTLRHS+ATH++ +G LR IQ +LGH++ TT IYT+V+ + + E+ Sbjct: 327 AVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQDLFEV 377 >gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1] gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1] Length = 304 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H +RHS+A+ L +LR +Q LGHS + TT+IY + + +Y Q P Sbjct: 241 ITPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKRVYQQYFPLSNG 300 Query: 63 KDKK 66 K ++ Sbjct: 301 KKEE 304 >gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107] Length = 221 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 30/51 (58%), Positives = 38/51 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL NG LR IQS+LGHS TT++YT++ +K M ++ Sbjct: 162 EVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTHITTKGMEQL 212 >gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] Length = 290 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRHSFATHL+ N +++ +Q +LGH+ LSTT IY +V K + + Sbjct: 234 KIHPHTLRHSFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEKFDAVKK 287 >gi|241992552|gb|ACS73620.1| IntI1 [uncultured bacterium] Length = 337 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT L +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPHTLRHSFATASLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|291530765|emb|CBK96350.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 357 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT------ 56 + H LRH+ AT + NG D+R ++ +LGH L+TTQIYT+V + ++ + + Sbjct: 281 ISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIK 340 Query: 57 ----HPSITQKDKKN 67 P + Q + KN Sbjct: 341 NDLPEPDLKQNEDKN 355 >gi|223932948|ref|ZP_03624943.1| integrase family protein [Streptococcus suis 89/1591] gi|223898394|gb|EEF64760.1| integrase family protein [Streptococcus suis 89/1591] Length = 175 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+ + +EI + +P Sbjct: 104 ITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 159 >gi|89147576|gb|ABD62647.1| integrase [uncultured bacterium] gi|89147610|gb|ABD62664.1| integrase [uncultured bacterium] Length = 163 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL NG D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLGNGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|212634737|ref|YP_002311262.1| Phage integrase [Shewanella piezotolerans WP3] gi|212556221|gb|ACJ28675.1| Phage integrase [Shewanella piezotolerans WP3] Length = 342 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RHSFAT LL G DLR+IQ ++GH+ + TTQIYT+V Sbjct: 287 VTAHTFRHSFATALLRKGYDLRTIQELMGHTDIKTTQIYTHVIGTH 332 >gi|188526753|gb|ACD62258.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|154000958|gb|ABS57047.1| integrase [uncultured bacterium] Length = 158 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|291557723|emb|CBL34840.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 357 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 10/75 (13%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT------ 56 + H LRH+ AT + NG D+R ++ +LGH L+TTQIYT+V + ++ + + Sbjct: 281 ISVHKLRHTAATLMYQNGVDVRVLKEVLGHENLNTTQIYTHVVNTQLRDAINSNPVMDIK 340 Query: 57 ----HPSITQKDKKN 67 P + Q + KN Sbjct: 341 NDLPEPDLKQDEDKN 355 >gi|30908734|gb|AAP37599.1| IntI [uncultured bacterium] Length = 161 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+HT RHSFATHLL++G D+R++Q +LGHS + TT IYT+V Sbjct: 120 VTSHTFRHSFATHLLADGYDIRTVQELLGHSDVRTTMIYTHV 161 >gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 348 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ E ++ Sbjct: 290 SAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVNK 342 >gi|302023570|ref|ZP_07248781.1| hypothetical protein Ssui0_02736 [Streptococcus suis 05HAS68] Length = 202 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H RHSFAT LL NG D+R IQ +LGHS ++ TQIYT+V+ + +EI + +P Sbjct: 131 ITPHMFRHSFATMLLDNGVDIRQIQHLLGHSNINVTQIYTHVSQSKQVEILSEHNP 186 >gi|89147404|gb|ABD62562.1| integrase [uncultured bacterium] Length = 163 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 34/41 (82%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFA+HLL +G D+R++Q +LGH +STT IYT+V Sbjct: 122 SCHTLRHSFASHLLEDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147667|gb|ABD62692.1| integrase [uncultured bacterium] Length = 163 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSKGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|218289451|ref|ZP_03493679.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218240319|gb|EED07501.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 145 Score = 88.8 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 37/51 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+FAT LL G DLR++Q +LGH LSTTQ+Y + +S+R+++ Sbjct: 89 TLHKLRHTFATRLLERGADLRTLQELLGHENLSTTQVYVHASSERLLQAVR 139 >gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] Length = 361 Score = 88.8 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E +T+P Sbjct: 302 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 360 Query: 63 K 63 K Sbjct: 361 K 361 >gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 450 Score = 88.8 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 35/51 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T+HT RH FATHLL G D+R IQ +LGHS + TT+IYT+V + ++ Sbjct: 380 VTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRNPHEAKVV 430 >gi|21674396|ref|NP_662461.1| integrase/recombinase-related protein [Chlorobium tepidum TLS] gi|21647577|gb|AAM72803.1| integrase/recombinase-related protein [Chlorobium tepidum TLS] Length = 86 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL +G DLR IQ +LGH TT+IYT+V+ K + +I Sbjct: 29 PVTLHWLRHSYATHLLESGTDLRYIQELLGHKSSKTTEIYTHVSQKSLQKI 79 >gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] Length = 283 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRHS+ATHL+ G +++ +Q +LGH+ LSTT IY +V + + + Sbjct: 230 VHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKK 282 >gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens SM101] gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium perfringens SM101] Length = 450 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + + +T+P Sbjct: 391 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLRKAV-KTNPLANI 449 Query: 63 K 63 K Sbjct: 450 K 450 >gi|223369834|gb|ACM88786.1| integrase [uncultured bacterium] Length = 163 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 ISSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|89147638|gb|ABD62678.1| integrase [uncultured bacterium] Length = 163 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T + RHSFATHLL G D+R++Q LGHS + TTQIYT+V Sbjct: 120 PATCRSFRHSFATHLLERGADIRTVQEQLGHSDVRTTQIYTHV 162 >gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 383 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S +I Sbjct: 324 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 373 >gi|192361592|ref|YP_001983640.1| integrase [Cellvibrio japonicus Ueda107] gi|190687757|gb|ACE85435.1| integrase [Cellvibrio japonicus Ueda107] Length = 323 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 36/42 (85%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHTLRHSFATHLL++G D+R++Q LGH+ + TTQIYT+V Sbjct: 265 VSAHTLRHSFATHLLASGADIRTVQDQLGHTDVKTTQIYTHV 306 >gi|148243976|ref|YP_001220215.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400539|gb|ABQ29073.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 302 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 37/51 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTLRHSFATHLL +G D+R IQ++LGHS L+TT +YT V ++ + + Sbjct: 234 VGPHTLRHSFATHLLEDGVDIRVIQALLGHSHLNTTALYTKVATRTVRAVI 284 >gi|89147379|gb|ABD62550.1| integrase [uncultured bacterium] Length = 163 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 VTPHVLRHSFATHLLESGSDIRTVQELLGHKDVSTTVIYTHV 162 >gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 298 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H LRH+ AT LL G D+R +Q +LGH +STT+IYT+V + +T+ Sbjct: 242 ITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTDHGLRTALKRTY 296 >gi|310765510|gb|ADP10460.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 208 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 41/64 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+ AT +L NG DLR IQ++L H + +TQIYT V+ + + ++ THP+ + Sbjct: 140 SCHLFRHAMATQMLENGADLRWIQAMLSHRSVESTQIYTQVSIRALQAVHASTHPAEREA 199 Query: 64 DKKN 67 D ++ Sbjct: 200 DSEH 203 >gi|89147652|gb|ABD62685.1| integrase [uncultured bacterium] Length = 163 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H+LRHSFAT LL +G D+R++Q +LGH +STTQIYT+V Sbjct: 120 PASCHSLRHSFATQLLESGYDIRTVQELLGHKDVSTTQIYTHV 162 >gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7] gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7] gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7] gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7] Length = 330 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+V+ +++ + + +P + Sbjct: 269 TPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEKLRDAV-KLNPLSQE 327 Query: 63 KD 64 + Sbjct: 328 DN 329 >gi|121591862|ref|ZP_01679033.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80] gi|121546269|gb|EAX56565.1| site-specific recombinase IntI4 [Vibrio cholerae 2740-80] Length = 79 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TTQIYT+V Sbjct: 22 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 64 >gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238] gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|215408032|emb|CAS02343.1| integron integrase [uncultured bacterium] Length = 138 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 96 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 138 >gi|156138693|dbj|BAF75923.1| integron integrase [uncultured bacterium] Length = 180 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 31/42 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HTLRHSFATHLL G D+R+ Q +LGHS +STT IYT+ Sbjct: 139 PAGCHTLRHSFATHLLEAGQDIRTTQELLGHSDVSTTMIYTH 180 >gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 307 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 1/58 (1%) Query: 4 TAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +AH LRHSFAT+LL ++ DLR++Q +LGH+ +STTQIYT++ K+ + P++ Sbjct: 243 SAHKLRHSFATNLLSTDKVDLRTLQELLGHADISTTQIYTHITDKKKKQAMAAVQPNL 300 >gi|89147359|gb|ABD62540.1| integrase [uncultured bacterium] Length = 163 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G ++R+IQ +LGH ++TT IYT+V Sbjct: 120 PATCHTLRHSFATHLLDSGYNIRTIQDLLGHKDVATTMIYTHV 162 >gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238] gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 88.4 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 328 Score = 88.0 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + G D+RS+QSILGH +STTQIYT+V+ + + +++P Sbjct: 270 TPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYTHVDDDDLRDAV-KSNPLSK 327 >gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228] Length = 312 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 35/54 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA+ L D++ +Q +LGH+ LSTTQIYT+V+++ D+ Sbjct: 255 KITPHKLRHTFASTLYRQTKDIKVVQDLLGHANLSTTQIYTHVDTEEKKSAIDE 308 >gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S +I Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 358 >gi|89147534|gb|ABD62627.1| integrase [uncultured bacterium] Length = 163 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLKRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|298206605|ref|YP_003714784.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] gi|83849235|gb|EAP87103.1| putative site-specific recombinase [Croceibacter atlanticus HTCC2559] Length = 295 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/57 (45%), Positives = 36/57 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHSFATHLL G +L +++ +LGHS L+ TQ+YTN + + Y +HP Sbjct: 238 PHLLRHSFATHLLGEGANLNAVKDLLGHSSLAATQVYTNNDIAVIKRAYSASHPRNK 294 >gi|91790630|ref|YP_551582.1| phage integrase [Polaromonas sp. JS666] gi|91699855|gb|ABE46684.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 36/51 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL D+R IQ +LGH +L TT +YT+V ++ + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYTHVATEVLREVI 282 >gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 330 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 40/66 (60%), Gaps = 5/66 (7%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT----HP 58 + H LRH+ AT + G D+R++Q +LGH ++TT+IYT+++ +++ + D+ Sbjct: 263 STHKLRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTHLDKEQLKDAVDKNPLSGFS 322 Query: 59 SITQKD 64 +K+ Sbjct: 323 RAKEKE 328 >gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA+ L DLR +Q +LGHS +STTQIYT+ + ++ D+ Sbjct: 253 KITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYTHTDKEQRKSAIDE 306 >gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238] gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/52 (57%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K + Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRNTV 296 >gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238] gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/52 (57%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K + Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRNTV 296 >gi|89147532|gb|ABD62626.1| integrase [uncultured bacterium] Length = 163 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 286 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 35/48 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ + Sbjct: 222 VTVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSNTLIR 269 >gi|291291809|gb|ADD91771.1| integrase [Pseudomonas aeruginosa] Length = 132 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 68 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 110 >gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1] gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1] Length = 278 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 37/58 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRHS+AT LL++ + + +LGHS ++TTQIYT + S + Y++ HP Sbjct: 215 LKVTPHQLRHSYATALLNSSAPIADVSELLGHSSMATTQIYTKLGSALKQQNYNKAHP 272 >gi|300872273|gb|ADK38964.1| IntI4 [Vibrio sp. V4(2010)] Length = 290 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATHLL G D+R++Q LGH+ + TT YT+V Sbjct: 240 TVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTTNYTHV 282 >gi|197336974|ref|YP_002158308.1| site-specific recombinase IntIA [Vibrio fischeri MJ11] gi|197314226|gb|ACH63675.1| site-specific recombinase IntIA [Vibrio fischeri MJ11] Length = 327 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFAT +L GGDLR+IQ +LGHS + TTQIYT+V Sbjct: 270 KASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|12831423|gb|AAK02079.1| site-specific recombinase IntIA [Aliivibrio fischeri] Length = 327 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFAT +L GGDLR+IQ +LGHS + TTQIYT+V Sbjct: 270 KASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|148261334|ref|YP_001235461.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|326403318|ref|YP_004283399.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|326404178|ref|YP_004284260.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|146403015|gb|ABQ31542.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325050179|dbj|BAJ80517.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] gi|325051040|dbj|BAJ81378.1| putative transposase for insertion sequence element [Acidiphilium multivorum AIU301] Length = 301 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGHS+L TT +Y V +K + + Sbjct: 234 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYARVATKTIRSV 283 >gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f] gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f] Length = 368 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S +I Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 358 >gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238] gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 30/52 (57%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL G D+R IQ +LGHS+LSTT YT+V +K + Sbjct: 245 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHSKLSTTARYTHVAAKTIRNTV 296 >gi|83722827|gb|ABC41685.1| integrase [uncultured bacterium] Length = 163 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRH FATHLL G D+R++Q +LGH ++TTQIYT+V Sbjct: 120 PASCHTLRHCFATHLLDAGCDIRTLQELLGHKDIATTQIYTHV 162 >gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium acetobutylicum EA 2018] Length = 328 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ AT + G D+RS+Q ILGH +STTQIYT+++ + + + Sbjct: 267 KLTPHKLRHTAATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDDENLRKAVK 320 >gi|325103320|ref|YP_004272974.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972168|gb|ADY51152.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 279 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 32/43 (74%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+LRHS+ATHL+ +G D+R +Q +LGH + TT IYT++ Sbjct: 224 TVHSLRHSYATHLIQSGIDVRIVQELLGHENIKTTMIYTHITD 266 >gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581] gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581] Length = 308 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 37/51 (72%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+HLL + DLR++Q +LGH+ LSTTQ+YT ++ + + YD Sbjct: 243 HPHRLRHSFASHLLESSQDLRAVQELLGHANLSTTQVYTRLDWQHLAAGYD 293 >gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 288 Score = 88.0 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 35/48 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ + Sbjct: 224 VTVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSNTLIR 271 >gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] Length = 295 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-KRMMEIYDQTHPS 59 T HTLRHSFA HLL NG D+ ++Q+++GHS ++TTQ+Y N + + Y HP Sbjct: 237 ITPHTLRHSFAAHLLGNGADIHAVQAMMGHSDMATTQMYMNYTRGEAVRSAYAGAHPR 294 >gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] Length = 368 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DL +IQ +LGH+ + TT IY +V+S +I Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLHVSSAHKAKI 358 >gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614] gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614] gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614] gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614] gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614] gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/49 (59%), Positives = 36/49 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T YT V+S+ + Sbjct: 223 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSSRLIRR 271 >gi|120553909|ref|YP_958260.1| integron integrase [Marinobacter aquaeolei VT8] gi|120323758|gb|ABM18073.1| integron integrase [Marinobacter aquaeolei VT8] Length = 329 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHSFAT LL +G DLR+IQ +LGHS + TT+IYT+V K Sbjct: 274 HTFRHSFATRLLESGYDLRTIQKLLGHSDVRTTEIYTHVVRK 315 >gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G DL +IQ +LGH+ + TT IY + ++ +I Sbjct: 309 VHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTAIYLHTSNAHKAKI 358 >gi|197259952|gb|ACH56525.1| IntI1 [Salmonella enterica subsp. enterica serovar Virchow] Length = 130 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 66 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 108 >gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 292 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 37/48 (77%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL G D+R IQ +LGH++L TT+ YT+V +K + + Sbjct: 228 TLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLETTERYTHVATKLIRD 275 >gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7] gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii str. 7] Length = 284 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT + G L +Q +LGH + TTQIYT++ ++ + EIY + Sbjct: 231 PHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTTQIYTHLVTEDLQEIYKK 281 >gi|188526779|gb|ACD62271.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQGLLGHSDVSTTMIYTHV 158 >gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 297 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 29/52 (55%), Positives = 38/52 (73%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 M T HTLRHSFATHLL G +LR IQ +LGH+ TT+IYT+V++ ++ I Sbjct: 237 MPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSSKTTEIYTHVSTTNLINI 288 >gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061] gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 333 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 37/57 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H RH AT +L NG D R IQ+ILGH+ L +TQIYT V + E+++QTHP+ Sbjct: 252 CHLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVAIGHLKEVHNQTHPAER 308 >gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429] gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429] Length = 282 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRHS+ATHL+ G +++ +Q +LGH+ LSTT IY +V + + + Sbjct: 229 VHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHVADQEKFDAVKK 281 >gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] Length = 328 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ +P Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK-NPLS 319 Query: 61 TQK 63 +K Sbjct: 320 GEK 322 >gi|88704224|ref|ZP_01101938.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] gi|88701275|gb|EAQ98380.1| site-specific recombinase IntIA [Congregibacter litoralis KT71] Length = 330 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 36/42 (85%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H+ RHSFATHLL +G DLR+IQ +LGHS ++TT+IYT+V ++ Sbjct: 274 HSFRHSFATHLLEDGYDLRTIQELLGHSDITTTEIYTHVVNR 315 >gi|114217149|dbj|BAF31251.1| integron integrase [uncultured bacterium] Length = 239 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 196 PATPHTLRHSLATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 238 >gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 308 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FATHLL G DLR+IQ ++GH+ + TT IY +V++ +I Sbjct: 249 VHLHMLRHTFATHLLEQGTDLRTIQELMGHTDIKTTAIYLHVSNAYKAKI 298 >gi|12642604|gb|AAK00305.1|AF314190_1 integrase IntI7 [uncultured bacterium PG11] Length = 303 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RHSFATHLL G D+R+IQ ++GHS L TT IYT+V Sbjct: 261 PGSCHTFRHSFATHLLGAGYDIRTIQELMGHSDLHTTMIYTHV 303 >gi|329117924|ref|ZP_08246638.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327466005|gb|EGF12276.1| site-specific recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 314 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 M T H+LRHS ATH + +LR +Q +LGH ++TTQIYT++++ + E++ Q H Sbjct: 256 MHITPHSLRHSCATHFVRETHNLRFVQILLGHKSIATTQIYTHLDNGFVQEMFHQHHSR 314 >gi|89147568|gb|ABD62643.1| integrase [uncultured bacterium] gi|89147616|gb|ABD62667.1| integrase [uncultured bacterium] Length = 163 Score = 87.6 bits (217), Expect = 5e-16, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 123 PHTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162 >gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 87.6 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH++AT LL+NG + + +LGH+ ++TTQIYT + + ME Y Q+HP Sbjct: 216 LKVTPHQLRHTYATELLNNGARIADVSELLGHASMATTQIYTKLGNALKMEHYLQSHP 273 >gi|297539030|ref|YP_003674799.1| integron integrase [Methylotenera sp. 301] gi|297258377|gb|ADI30222.1| integron integrase [Methylotenera sp. 301] Length = 313 Score = 87.6 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLLS G D+R+IQ +LGH L TT IYT+V Sbjct: 258 ASVHTLRHSFATHLLSAGTDIRTIQLLLGHRSLQTTMIYTHV 299 >gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1] gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1] Length = 323 Score = 87.6 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRHS A L+ +G D+R +Q +LGHS +STT+IYT+V + ++ Sbjct: 259 LHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTHVTDNVLQTKIEKA 314 >gi|59713846|ref|YP_206621.1| XerC/CodV family integrase/recombinase [Vibrio fischeri ES114] gi|59482094|gb|AAW87733.1| integrase/recombinase (XerC/CodV family) [Vibrio fischeri ES114] Length = 327 Score = 87.6 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RHSFAT +L GGDLR+IQ +LGHS + TTQIYT+V Sbjct: 270 KASSHTFRHSFATRILERGGDLRTIQELLGHSDIKTTQIYTHV 312 >gi|223369840|gb|ACM88789.1| integrase [uncultured bacterium] Length = 163 Score = 87.6 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 24/43 (55%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G +R++Q +LGH+ + TT IYT+V Sbjct: 120 PGSVHTLRHSFATHLLESGYGIRTVQELLGHADVKTTMIYTHV 162 >gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 28/50 (56%), Positives = 36/50 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL G D+R IQ +LGH++L+TT YT V +K + + Sbjct: 166 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVATKMIRD 215 >gi|215408030|emb|CAS02342.1| integron integrase [uncultured bacterium] Length = 150 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 109 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 150 >gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] Length = 344 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +AH LRH+ AT +L NG D+R++Q +LGH L+TTQIYT+V+S + + +P Sbjct: 271 SAHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDSDDLRTA-AKANPLGRVG 329 Query: 64 DKKN 67 KK+ Sbjct: 330 RKKS 333 >gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri] Length = 313 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238] gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238] gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238] gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238] gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238] gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 328 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238] gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238] gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238] gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|156138683|dbj|BAF75918.1| integron integrase [uncultured bacterium] Length = 160 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 119 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160 >gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193] gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193] Length = 306 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/52 (51%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL D+R IQ +LGH++L+TT YT+V +K + + Sbjct: 236 PATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRDTV 287 >gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47] Length = 408 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 35/51 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T+HT RH FATHLL G D+R IQ +LGHS + TT+IYT+V + ++ Sbjct: 338 VTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHVRNPHEAKVV 388 >gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 328 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238] gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238] gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238] gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238] gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238] gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238] gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238] gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238] gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 328 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|89147381|gb|ABD62551.1| integrase [uncultured bacterium] Length = 163 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + HTLRHSFATHLL G D+R +Q +LGH ++TT IYT+V Sbjct: 120 NVSPHTLRHSFATHLLEFGTDIRVLQELLGHQHVNTTMIYTHV 162 >gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238] gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|28558853|ref|NP_788113.1| putative integrase/recombinase [Ruegeria sp. PR1b] gi|22726404|gb|AAN05199.1| RC126 [Ruegeria sp. PR1b] Length = 313 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHS AT L+ G D+R +Q +LGH+ ++TT+IYT V+ + Sbjct: 252 TPHRFRHSAATLLIEEGVDIRLVQRLLGHASIATTEIYTKVSDNSLSSAVSAA 304 >gi|89147530|gb|ABD62625.1| integrase [uncultured bacterium] Length = 163 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 28/40 (70%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL G D+R IQ +LGH+ +STTQIYT+V Sbjct: 123 PHTLRHSFATHLLERGRDIREIQELLGHANVSTTQIYTHV 162 >gi|325520789|gb|EGC99801.1| site-specific tyrosine recombinase XerD [Burkholderia sp. TJI49] Length = 70 Score = 87.2 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 32/56 (57%), Positives = 44/56 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HTLRH+FATHLL++G DLR +Q +LGHS +STTQIYT+V +R+ ++ Q HP Sbjct: 14 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRTLHAQHHPR 69 >gi|223369818|gb|ACM88778.1| integrase [uncultured bacterium] Length = 163 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++HT RH FATHLL +G D+R++Q +LGH+ +STT IYT+V Sbjct: 121 ISSHTFRHCFATHLLESGYDIRTVQELLGHADVSTTMIYTHV 162 >gi|89147428|gb|ABD62574.1| integrase [uncultured bacterium] Length = 163 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|310643234|ref|YP_003947992.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309248184|gb|ADO57751.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 145 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 34/47 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H+LRHSFATHLL NG DLR IQ +LGH + TT+ T+V+ + + Sbjct: 84 VSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTTERCTHVSRRDI 130 >gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 304 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HTLRHS+ATHL+ +G D+R ++ +LGH + TT IYT++ + Sbjct: 249 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 296 >gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238] gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL G D+R IQ++LGHS+L+TT Y +V + + + Sbjct: 250 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVATGMIAAV 300 >gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3] Length = 203 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 34/51 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRHS+ATHL G D++ IQ +LGH TT+IYT+V+ K + + Sbjct: 146 EVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTKTTEIYTHVSRKVIQNV 196 >gi|89147553|gb|ABD62636.1| integrase [uncultured bacterium] gi|89147624|gb|ABD62671.1| integrase [uncultured bacterium] Length = 163 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL +G D+R++Q +LGH + TT IYT+V Sbjct: 123 PHTLRHSFATHLLESGSDIRTVQELLGHKHVQTTMIYTHV 162 >gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 301 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HTLRHS+ATHL+ +G D+R ++ +LGH + TT IYT++ + Sbjct: 246 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 293 >gi|215408012|emb|CAS02333.1| integron integrase [uncultured bacterium] Length = 157 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|162448726|ref|YP_001611093.1| integrase/recombinase [Sorangium cellulosum 'So ce 56'] gi|161159308|emb|CAN90613.1| Integrase/recombinase [Sorangium cellulosum 'So ce 56'] Length = 316 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL G D+R+IQ++LGH + TT IYT++ Sbjct: 261 ATCHILRHSFATHLLEAGTDIRTIQTLLGHKDVRTTMIYTHI 302 >gi|30908728|gb|AAP37596.1| IntI [uncultured bacterium] Length = 160 Score = 87.2 bits (216), Expect = 7e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 119 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 160 >gi|215407984|emb|CAS02319.1| integron integrase [uncultured bacterium] gi|215407986|emb|CAS02320.1| integron integrase [uncultured bacterium] gi|215407988|emb|CAS02321.1| integron integrase [uncultured bacterium] gi|215407990|emb|CAS02322.1| integron integrase [uncultured bacterium] gi|215408004|emb|CAS02329.1| integron integrase [uncultured bacterium] gi|215408014|emb|CAS02334.1| integron integrase [uncultured bacterium] gi|215408018|emb|CAS02336.1| integron integrase [uncultured bacterium] gi|215408024|emb|CAS02339.1| integron integrase [uncultured bacterium] gi|215408028|emb|CAS02341.1| integron integrase [uncultured bacterium] gi|215408034|emb|CAS02344.1| integron integrase [uncultured bacterium] Length = 157 Score = 87.2 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|94442302|dbj|BAE93650.1| integron integrase [uncultured bacterium] Length = 162 Score = 87.2 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 27/44 (61%), Positives = 33/44 (75%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 M +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 118 MRVGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147516|gb|ABD62618.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 35/42 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T+H LRH+FATHLL G D+R++Q +LGHS ++TTQIYT+V Sbjct: 121 ITSHALRHAFATHLLEAGTDIRTLQELLGHSDVATTQIYTHV 162 >gi|300956936|ref|ZP_07169191.1| site-specific recombinase, phage integrase family [Escherichia coli MS 175-1] gi|300316283|gb|EFJ66067.1| site-specific recombinase, phage integrase family [Escherichia coli MS 175-1] gi|323974156|gb|EGB69289.1| phage integrase [Escherichia coli TW10509] Length = 108 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/46 (56%), Positives = 34/46 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V + Sbjct: 46 VTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQH 91 >gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 325 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 327 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|120556113|ref|YP_960464.1| integron integrase [Marinobacter aquaeolei VT8] gi|120325962|gb|ABM20277.1| integron integrase [Marinobacter aquaeolei VT8] Length = 322 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 35/46 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RH+FAT LL +G D+R++Q ILGHS + TT+IYT+V R Sbjct: 263 VTAHTFRHAFATELLRSGSDIRTVQEILGHSDIRTTEIYTHVIGDR 308 >gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 328 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|89147602|gb|ABD62660.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147545|gb|ABD62632.1| integrase [uncultured bacterium] gi|89147549|gb|ABD62634.1| integrase [uncultured bacterium] gi|89147565|gb|ABD62642.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|332662500|ref|YP_004445288.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332331314|gb|AEE48415.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 355 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHSFATHLL G D+ IQ +LGH+ L TT YT+V+ + + I Sbjct: 298 NVGIHGLRHSFATHLLEAGTDISFIQELLGHNDLKTTLRYTHVSQQTIKNI 348 >gi|103485566|ref|YP_615127.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98975643|gb|ABF51794.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 302 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL +G ++R IQ++LGH+ L+TT Y V +K ++ Sbjct: 234 VGPHTLRHSFATHLLEDGVNIRVIQALLGHANLNTTAFYLQVATKTTRKV 283 >gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM] gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD] Length = 358 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRHS+ATHLL G D+R IQ LGH+ + TTQIYT V S+ I Sbjct: 300 TVGIHGLRHSYATHLLEMGTDIRYIQEFLGHNNIKTTQIYTQVTSEHQRTI 350 >gi|110597667|ref|ZP_01385952.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM 13031] gi|110340787|gb|EAT59264.1| Site-specific recombinase XerD-like [Chlorobium ferrooxidans DSM 13031] Length = 86 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 33/43 (76%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HT RHS+ATHLL G D+R+IQ ++GH +STT IYT+V +K Sbjct: 24 CHTFRHSYATHLLEAGYDIRTIQELMGHKDVSTTMIYTHVLNK 66 >gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 356 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 27/47 (57%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D+R IQ +LGH+ + TTQIYT+V +I Sbjct: 303 HGLRHSFATHLLETGTDIRFIQELLGHNSIKTTQIYTHVTDIAKAQI 349 >gi|247663502|gb|ACT09076.1| IntI1 [Vibrio cholerae] Length = 313 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|215408006|emb|CAS02330.1| integron integrase [uncultured bacterium] Length = 157 Score = 86.9 bits (215), Expect = 8e-16, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+ Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTH 157 >gi|247663508|gb|ACT09079.1| IntI1 [Vibrio cholerae] gi|247663514|gb|ACT09082.1| IntI1 [Vibrio cholerae] Length = 313 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|223369785|gb|ACM88762.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHSFATHLL G D+ ++Q +LGH+ + TTQIYT+V Sbjct: 121 VTCHTSRHSFATHLLQAGRDIHTVQELLGHTDVKTTQIYTHV 162 >gi|89147592|gb|ABD62655.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] Length = 457 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+ AT + +G D+RS+QSILGH +STTQIYT+V+ + + + + Sbjct: 399 TPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEEILRDAVN 450 >gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] Length = 428 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 31/45 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + T HTLRHSFATHLL G LR IQ ILGH TT+IYT++ Sbjct: 368 NVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTTEIYTHITQ 412 >gi|89147572|gb|ABD62645.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29] Length = 279 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HTLRHS+ATHL+ +G D+R ++ +LGH + TT IYT++ + Sbjct: 224 SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 271 >gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus 98/2] gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2] Length = 291 Score = 86.9 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ + Y + Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281 >gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum H10] gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10] Length = 330 Score = 86.9 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ AT + G D+R++Q ILGH +STT+IYT+++ +++ E D+ HP Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVDK-HP 319 >gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] Length = 291 Score = 86.9 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ + Y + Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281 >gi|89147580|gb|ABD62649.1| integrase [uncultured bacterium] Length = 163 Score = 86.9 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A] gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus HVE10/4] Length = 291 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ + Y + Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281 >gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor bescii DSM 6725] gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 328 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT + +G D+RS+Q+ILGH +STT+IYT+VN + + +++ Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVNDDDIKKAFEK 315 >gi|89147543|gb|ABD62631.1| integrase [uncultured bacterium] Length = 163 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 329 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ AT + G D+R++Q ILGH +STT+IYT+++ +++ E ++ HP Sbjct: 265 STHKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTHLDQQQLKEAVNK-HP 319 >gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4] gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4] Length = 291 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ + Y + Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281 >gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15] gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15] gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] Length = 291 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G ++ ++Q +LGH + TTQIYT++ + Y + Sbjct: 230 PHILRHTFATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281 >gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 295 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 27/52 (51%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL D+R IQ +LGH++L+TT YT+V +K + + Sbjct: 225 PATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRDTV 276 >gi|89147642|gb|ABD62680.1| integrase [uncultured bacterium] Length = 164 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/44 (59%), Positives = 34/44 (77%), Gaps = 1/44 (2%) Query: 2 STTAHTLR-HSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H+LR HSFATHLL +G D+R++Q LG+S + TTQIYT+V Sbjct: 120 PATPHSLRRHSFATHLLESGADIRTVQEQLGYSDVRTTQIYTHV 163 >gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RHSFAT LL G ++ +Q +LGH+ LSTT IY ++ K Sbjct: 244 VHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKEKRAAVQ 295 >gi|90020074|ref|YP_525901.1| XerC/CodV family integrase/recombinase [Saccharophagus degradans 2-40] gi|89949674|gb|ABD79689.1| Integron integrase [Saccharophagus degradans 2-40] Length = 373 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT+LL G D+R+IQ +LGH+ +STTQIYT+V Sbjct: 274 CHTFRHSFATNLLRAGTDIRNIQEMLGHTDISTTQIYTHV 313 >gi|332653284|ref|ZP_08419029.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16] gi|332518430|gb|EGJ48033.1| tyrosine recombinase XerC [Ruminococcaceae bacterium D16] Length = 342 Score = 86.5 bits (214), Expect = 1e-15, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 5/67 (7%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP----S 59 ++H LRH+ AT +L NG D+R++Q +LGH L+TTQIYT+V++ + + +P Sbjct: 273 SSHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDNDDLRTA-ARANPLAKVR 331 Query: 60 ITQKDKK 66 T K+KK Sbjct: 332 KTAKEKK 338 >gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 297 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/53 (50%), Positives = 38/53 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS+ T LL NG DL SIQS++GH+ L+TT+IYT+V+ K + + + Sbjct: 241 TIHKLRHSYGTLLLQNGADLISIQSLMGHNDLNTTKIYTHVDMKHLKQEVKKF 293 >gi|164633081|gb|ABY64756.1| IntI1 [Klebsiella pneumoniae] Length = 317 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY + Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYRH 314 >gi|134287704|ref|YP_001109870.1| phage integrase family protein [Burkholderia vietnamiensis G4] gi|134132354|gb|ABO60089.1| phage integrase family protein [Burkholderia vietnamiensis G4] Length = 291 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 3/59 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY---DQTHP 58 + HTLRH FATHLL D+R IQ +LGH +L TT +YT V + + E+ + HP Sbjct: 232 VSMHTLRHCFATHLLEQKVDIRVIQVLLGHKQLDTTALYTQVATDLLREVVSPLEMLHP 290 >gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 329 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V++ + + +++P Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDNDTLRDAV-KSNPLSK 328 >gi|188526790|gb|ACD62276.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDGSTTMIYTHV 158 >gi|89147559|gb|ABD62639.1| integrase [uncultured bacterium] Length = 163 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHGLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147650|gb|ABD62684.1| integrase [uncultured bacterium] Length = 163 Score = 86.1 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 30/43 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH+FATHLL G ++R +Q ++GH + TT IYT+V Sbjct: 120 PVGCHTLRHAFATHLLEAGHNIRVVQELMGHKDVETTMIYTHV 162 >gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 86.1 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 34/45 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H LRHSFA HL+ +G DL+S+Q ILGHS +STTQ+Y ++N Sbjct: 238 EITPHMLRHSFAAHLVCSGADLKSVQEILGHSDISTTQMYAHMNQ 282 >gi|188526796|gb|ACD62279.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 86.1 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHLFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|78223999|ref|YP_385746.1| integron integrase [Geobacter metallireducens GS-15] gi|78195254|gb|ABB33021.1| Integron integrase [Geobacter metallireducens GS-15] Length = 449 Score = 86.1 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 31/41 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 TAHT RHS+ATHLL D+R+IQ+ LGH+ L TT IYT+ Sbjct: 393 VTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 433 >gi|161867961|ref|YP_001598142.1| hypothetical protein pOU7519_99 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|161087340|gb|ABX56810.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] Length = 337 Score = 86.1 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T T RHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 273 PATPPTFRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315 >gi|188526777|gb|ACD62270.1| IntI1 integrase [uncultured bacterium] Length = 158 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL + D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSFATALLRSSYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147480|gb|ABD62600.1| integrase [uncultured bacterium] Length = 163 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D+R+IQ++LGH + TT IYT+V Sbjct: 120 KASVHTLRHSFATHLLQDGYDIRTIQALLGHKSVRTTMIYTHV 162 >gi|154000930|gb|ABS57033.1| integrase [uncultured bacterium] Length = 158 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRH FAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHPFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|89147432|gb|ABD62576.1| integrase [uncultured bacterium] Length = 163 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|89147578|gb|ABD62648.1| integrase [uncultured bacterium] gi|89147604|gb|ABD62661.1| integrase [uncultured bacterium] Length = 163 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01] gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01] Length = 304 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 35/49 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT L+ NG +L +++ +LGH ++TTQIY + + +R+ E Sbjct: 249 TPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLHASRERLREA 297 >gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 334 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 10/73 (13%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ---TH-- 57 + H LRH+ AT L +G D+R +Q ILGH LSTT+IYT+++ +++ + ++ H Sbjct: 261 SVHKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQLQDAVNRSPLAHFS 320 Query: 58 ----PSITQKDKK 66 P +K + Sbjct: 321 GQKAPRDKEKPED 333 >gi|312142468|ref|YP_003993914.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311903119|gb|ADQ13560.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 221 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+FAT L DLR +Q LGHS + TT IYT++ + + + Sbjct: 163 KVSPHVLRHTFATELYRMTNDLRKVQKTLGHSSIQTTMIYTHLVDEELENDMKK 216 >gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 345 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 39/62 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + RH+ AT +L NG DLR IQ++LGH + +TQ YT V+ + + ++ THP+ + Sbjct: 276 SCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRALQAVHASTHPAEQTE 335 Query: 64 DK 65 D+ Sbjct: 336 DE 337 >gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 294 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HL+ G D+ ++Q++LGHS +T Q+Y + + E Y P Sbjct: 237 ITPHTLRHSFAAHLIRGGADVHAVQAMLGHSDSTTAQMYAAYSGNTVRENYRAALPR 293 >gi|91792490|ref|YP_562141.1| integron integrase [Shewanella denitrificans OS217] gi|91714492|gb|ABE54418.1| Integron integrase [Shewanella denitrificans OS217] Length = 319 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G D+R+IQ +LGHS + TT+IYT+V Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304 >gi|89147586|gb|ABD62652.1| integrase [uncultured bacterium] Length = 163 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 33/40 (82%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] Length = 218 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T HTLRHSFA HL+ G D+ ++Q++LGHS +TT +Y + + E Y P Sbjct: 161 ITPHTLRHSFAAHLIRGGADIHAVQAMLGHSDSTTTHMYAAYSGNTVGETYRAALPR 217 >gi|217968717|ref|YP_002353951.1| integrase [Thauera sp. MZ1T] gi|217506044|gb|ACK53055.1| integrase family protein [Thauera sp. MZ1T] Length = 291 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 34/51 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRH FATHLL D+R IQ++LGH +L TT IYT V + + E+ Sbjct: 232 VSMHTLRHCFATHLLEQKVDIRIIQALLGHKKLDTTVIYTQVATDLLREVV 282 >gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY---DQTHP 58 H LRH+FAT L G L ++Q +LGHS + TTQIY +++ + + + Y HP Sbjct: 227 VRPHVLRHTFATRALRRGLSLPALQRLLGHSDIKTTQIYLHLSVEDLKKEYYEKMDKHP 285 >gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii NCIMB 8052] gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 329 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + G D+RS+QSILGH+ +STTQIYT+V+ + + +++P Sbjct: 271 TPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTTQIYTHVDDDSLRDAV-KSNPLSK 328 >gi|94442268|dbj|BAE93633.1| integron integrase [uncultured bacterium] Length = 162 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B str. Eklund 17B] gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 329 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + +++P Sbjct: 271 TPHKLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVDDDTLRDAV-KSNPLSK 328 >gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485] gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485] Length = 299 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 32/45 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H LRHSFA H L NG DLR +Q LGH+ ++TTQIYT++ + Sbjct: 242 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQIYTHLTEEE 286 >gi|310813961|gb|ADP30788.1| IntI1 [Serratia rubidaea] Length = 313 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 31/41 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT L +G D+R++Q +LGHS +STT IYT Sbjct: 273 PATPHTLRHSFATAFLRSGYDIRTVQDLLGHSDVSTTMIYT 313 >gi|88797010|ref|ZP_01112600.1| tyrosine recombinase [Reinekea sp. MED297] gi|88779879|gb|EAR11064.1| tyrosine recombinase [Reinekea sp. MED297] Length = 317 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 33/55 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ TH+ NG +LR +Q LGH TT+IYT+V + + Y THP Sbjct: 256 SCHLLRHTTPTHMHRNGAELRDLQEFLGHEDPKTTEIYTHVTIRDLKRTYKSTHP 310 >gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3 str. Alaska E43] gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] Length = 329 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V++ + + +++P Sbjct: 271 TPHKLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDNDTLRDAV-KSNPLSK 328 >gi|160873053|ref|YP_001557059.1| integron integrase [Shewanella baltica OS195] gi|160858575|gb|ABX51799.1| integron integrase [Shewanella baltica OS195] Length = 319 Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G D+R+IQ +LGHS + TT+IYT+V Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTEIYTHV 304 >gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c] gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c] Length = 292 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HT+RHS+A+ L +LR +Q LGHS + TT+IY + + +Y P Q Sbjct: 228 VTPHTIRHSYASELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGVYRTYFPLSKQ 287 Query: 63 KD 64 D Sbjct: 288 DD 289 >gi|89147430|gb|ABD62575.1| integrase [uncultured bacterium] Length = 163 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 34/42 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL +G D+R++Q +LGH +STT IYT+V Sbjct: 121 ATPHTLRHSFATHLLDDGYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] Length = 334 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%) Query: 4 TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+R +Q ILGH +STTQIYT+V+++ + + +++P + Sbjct: 274 TPHKLRHTAATLMFKYGGVDIRKLQLILGHESISTTQIYTHVDNEGLRDAV-KSNPLSNE 332 >gi|89147582|gb|ABD62650.1| integrase [uncultured bacterium] Length = 163 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLL N D+R++Q +LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLGNSYDIRTVQELLGHKDVSTTMIYTHV 162 >gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571] gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571] Length = 302 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H +RHS+A+ L +LR +Q LGHS + TT++Y + + E+Y + P + Sbjct: 243 ITPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERREVYKKYFPLSKE 302 >gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 326 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ A+ + G D+RS+Q ILGH ++TTQIYT++N K++ D Sbjct: 263 TVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQLKNTVDN 315 >gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HT RHSFATHLL G DL +IQ +LGH+ + TT IY + ++ +I Sbjct: 309 VHVHTARHSFATHLLEQGTDLHTIQELLGHNDIKTTAIYLHTSNAHKAKI 358 >gi|215407982|emb|CAS02318.1| integron integrase [uncultured bacterium] Length = 149 Score = 85.3 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 109 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 149 >gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234] gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] Length = 286 Score = 85.3 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 27/48 (56%), Positives = 35/48 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + HTLRHSFATHLL +G D+R IQ +LGH+ LSTT YT V++ + Sbjct: 222 ISVHTLRHSFATHLLESGTDIRIIQVLLGHNNLSTTARYTKVSNTLIR 269 >gi|89147460|gb|ABD62590.1| integrase [uncultured bacterium] Length = 163 Score = 85.3 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT+RHS+ATHLL NG ++R +Q ++GH + TT+IYT+V Sbjct: 121 VGCHTMRHSYATHLLENGINIRMVQELMGHKDVKTTEIYTHV 162 >gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 85.3 bits (211), Expect = 3e-15, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFA HL+ +G D+ ++Q++LGHS +TTQIYTN + Sbjct: 237 ITPHTLRHSFAAHLIRSGADIHAVQAMLGHSDTATTQIYTNYTAS 281 >gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] Length = 420 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414 >gi|146304382|ref|YP_001191698.1| phage integrase family protein [Metallosphaera sedula DSM 5348] gi|145702632|gb|ABP95774.1| phage integrase family protein [Metallosphaera sedula DSM 5348] Length = 286 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT+ + G L ++Q ++GH + TTQIYT++ ++ + Y + Sbjct: 232 PHVLRHTFATNAIRRGVPLPAVQRLMGHKDIKTTQIYTHLVTEDLENAYRRA 283 >gi|94442300|dbj|BAE93649.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1] gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1] Length = 309 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 32/46 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRH+FATHLL +G D+R+IQ +LGH L+TT Y V + Sbjct: 236 PITPHSLRHAFATHLLESGTDVRTIQLLLGHRSLATTSRYLKVATS 281 >gi|320100283|ref|YP_004175875.1| integrase family protein [Desulfurococcus mucosus DSM 2162] gi|319752635|gb|ADV64393.1| integrase family protein [Desulfurococcus mucosus DSM 2162] Length = 334 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L S+Q +LGH+ + TTQ+Y +++ + + + Y + Sbjct: 242 PHVLRHTFATRALRRGLSLPSLQRLLGHADIKTTQVYLHLSIEDLKKEYQE 292 >gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] Length = 420 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414 >gi|94442272|dbj|BAE93635.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8] gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8] Length = 313 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT L+ G +L +++ +LGH ++TTQIY + + +R+ E Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLREA 306 >gi|94442278|dbj|BAE93638.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614] gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T YT V Sbjct: 223 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKV 264 >gi|333011635|gb|EGK31048.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227] gi|333011749|gb|EGK31158.1| tyrosine recombinase xerD domain protein [Shigella flexneri K-227] Length = 91 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 27 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 69 >gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] Length = 339 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 2/64 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D+R ++ ILGH+ LSTT+IYT+++ ++M + ++ P + Sbjct: 264 SPHKLRHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHISDRQMEKA-AKSSPLSSV 322 Query: 63 KDKK 66 +K Sbjct: 323 APRK 326 >gi|94442292|dbj|BAE93645.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442266|dbj|BAE93632.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 298 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T HTLRH++A+HL NG + SIQ +LGHS L++TQIY +VN++ + ++ P + Sbjct: 241 TIHTLRHTYASHLALNGASILSIQKLLGHSDLNSTQIYAHVNTEHLRSEVEKL-PLAKK 298 >gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] Length = 431 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRHS AT L G D+RS+Q+ILGH ++TT++YT+V+ + + + Sbjct: 373 TPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDDETLRNVIK 424 >gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] Length = 289 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H LRH+FAT L+N D+R +Q LGHS ++TTQ YT+V + + E+ + Sbjct: 219 LGTHPHILRHAFATE-LTNYADIRVVQESLGHSDITTTQRYTHVYREALKELVE 271 >gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 420 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414 >gi|188526798|gb|ACD62280.1| IntI1 integrase [uncultured bacterium] Length = 117 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 27/43 (62%), Positives = 34/43 (79%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 75 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 117 >gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5] gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5] Length = 420 Score = 84.9 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414 >gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 327 Score = 84.9 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ + + Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRDAVSK 315 >gi|94442294|dbj|BAE93646.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442280|dbj|BAE93639.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.9 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ] Length = 399 Score = 84.9 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 33/48 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++Q +LGH+ + TT IY +++ + E Sbjct: 345 FHDLRHTFASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLREA 392 >gi|224826550|ref|ZP_03699651.1| integron integrase [Lutiella nitroferrum 2002] gi|224601151|gb|EEG07333.1| integron integrase [Lutiella nitroferrum 2002] Length = 274 Score = 84.9 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRHSFATHLL+ G D+R+IQ +LGH L TT IYT+V Sbjct: 219 ASVHCLRHSFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 260 >gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] Length = 313 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 34/49 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT L+ G +L +++ +LGH ++TTQIY + + +R+ E Sbjct: 258 TPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLHASRERLREA 306 >gi|39997562|ref|NP_953513.1| bifunctional hypothetical protein/integrase [Geobacter sulfurreducens PCA] gi|39984453|gb|AAR35840.1| hypothetical protein/integrase, fusion [Geobacter sulfurreducens PCA] gi|298506503|gb|ADI85226.1| integrase domain protein [Geobacter sulfurreducens KN400] Length = 457 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 31/41 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 TAHT RHS+ATHLL D+R+IQ+ LGH+ L TT IYT+ Sbjct: 401 VTAHTFRHSYATHLLQANYDIRTIQTKLGHASLKTTMIYTH 441 >gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7] Length = 420 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414 >gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6] gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6] Length = 420 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 414 >gi|94442282|dbj|BAE93640.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|94442256|dbj|BAE93627.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|89147506|gb|ABD62613.1| integrase [uncultured bacterium] Length = 163 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT+RHS+ATHLL NG ++R +Q ++GH + TT+IYT+V Sbjct: 121 VGCHTMRHSYATHLLENGTNIRIVQDLMGHKDVKTTEIYTHV 162 >gi|94442284|dbj|BAE93641.1| integron integrase [uncultured bacterium] Length = 162 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFATHLL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATHLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|118591862|ref|ZP_01549257.1| integrase/recombinase [Stappia aggregata IAM 12614] gi|118435505|gb|EAV42151.1| integrase/recombinase [Stappia aggregata IAM 12614] Length = 85 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL +G D+R IQ +LGHS+L TT +Y V+ + + + Sbjct: 18 VSPHTLRHSFATHLLEDGTDIRVIQVLLGHSKLETTALYAKVSPRTIHAV 67 >gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 327 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R++Q +LGHS +STTQIYT+V+ ++ + + Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTHVDDSQLRDAVSK 315 >gi|170726991|ref|YP_001761017.1| integron integrase [Shewanella woodyi ATCC 51908] gi|169812338|gb|ACA86922.1| integron integrase [Shewanella woodyi ATCC 51908] Length = 319 Score = 84.5 bits (209), Expect = 4e-15, Method: Composition-based stats. Identities = 28/42 (66%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHSFAT LL G D+R+IQ +LGHS + TTQIYT+V Sbjct: 263 VTAHTFRHSFATSLLLKGHDIRTIQELLGHSDVKTTQIYTHV 304 >gi|332295804|ref|YP_004437727.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] gi|332178907|gb|AEE14596.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 298 Score = 84.5 bits (209), Expect = 5e-15, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 35/55 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S T H LRHS AT LL+ G +L+ IQ ILGH ++TT IY + K + + Y ++ Sbjct: 238 SITPHQLRHSLATFLLNQGVELKYIQEILGHENINTTNIYAKLTEKTIKKEYYKS 292 >gi|30908736|gb|AAP37600.1| IntI [uncultured bacterium] Length = 160 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 23/38 (60%), Positives = 30/38 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 + HTLRHSFATHLL +G D+R++Q +LGHS + TT I Sbjct: 120 VSCHTLRHSFATHLLEDGYDIRTVQELLGHSSVETTMI 157 >gi|220919754|ref|YP_002495057.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219952174|gb|ACL62565.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 286 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH +L TT +YT V K + E+ Sbjct: 224 VSMHTLRHSFATHLLERKTDIRVIQVLLGHRKLDTTAVYTRVALKAIREV 273 >gi|126664355|ref|ZP_01735339.1| integrase [Marinobacter sp. ELB17] gi|126630681|gb|EBA01295.1| integrase [Marinobacter sp. ELB17] Length = 319 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 31/43 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT LL G D+R++Q +LGH+ L TTQIYT+V Sbjct: 264 PAGCHTFRHSFATELLKRGNDIRTVQDLLGHADLRTTQIYTHV 306 >gi|89147510|gb|ABD62615.1| integrase [uncultured bacterium] Length = 163 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G ++R +Q +LGH+ + TT IYT+V Sbjct: 121 ATVHTLRHSFATHLLLAGTNIREVQELLGHANVETTMIYTHV 162 >gi|304312589|ref|YP_003812187.1| Integron integrase [gamma proteobacterium HdN1] gi|301798322|emb|CBL46544.1| Integron integrase [gamma proteobacterium HdN1] Length = 334 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 24/39 (61%), Positives = 31/39 (79%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT LL G D+R+IQ +LGH+ + TT+IYT+V Sbjct: 282 HTFRHSFATRLLEVGYDIRTIQKLLGHADVKTTEIYTHV 320 >gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 356 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 38/55 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 296 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 350 >gi|223587858|emb|CAX36644.1| integron intagrase IntI protein [Citrobacter sp. JEK-2009] Length = 136 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IYT Sbjct: 96 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 136 >gi|152984624|ref|YP_001346111.1| integrase [Pseudomonas aeruginosa PA7] gi|150959782|gb|ABR81807.1| integrase [Pseudomonas aeruginosa PA7] Length = 394 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+H + NGGD+ ++Q +LGH+ L T Y + + M E+ HP + Sbjct: 287 HVLRHTFASHYMRNGGDIITLQRVLGHASLQMTMRYAHFSPGHMAEVV-HLHPLAGR 342 >gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RHS ATHLL G ++ +Q ILGH+ +STT IY ++ + E Sbjct: 245 HPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREKREAVR 295 >gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 327 Score = 84.2 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 2/64 (3%) Query: 4 TAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + G D+R ++ +LGH L TT+IYT+++S++M D ++P Sbjct: 263 SCHKLRHTAATLMYQQGGVDVRVLKEVLGHENLGTTEIYTHLSSEQMKNAAD-SNPLAKI 321 Query: 63 KDKK 66 K KK Sbjct: 322 KPKK 325 >gi|89147472|gb|ABD62596.1| integrase [uncultured bacterium] Length = 163 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 TAHT RHS AT LL +G DLR+IQ +LGH+ +STT IYT+V Sbjct: 121 VTAHTFRHSLATRLLEHGYDLRTIQELLGHADISTTAIYTHV 162 >gi|254436771|ref|ZP_05050265.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252217|gb|EDY76531.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 290 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 28/50 (56%), Positives = 36/50 (72%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL D+R IQ +LGH++LSTT YT+V +K + + Sbjct: 220 PATLHTLRHSFATHLLEANIDVRVIQVLLGHAKLSTTARYTHVATKIIRD 269 >gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 317 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 32/49 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHS AT LL+NG D+ +Q +LGH +STTQIY +V+ +M Sbjct: 257 ATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVMR 305 >gi|154000904|gb|ABS57020.1| integrase [uncultured bacterium] Length = 158 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium] Length = 312 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 HT RH+FA L GGDLRS+Q +LGHS+L TT IY +++S + + + + P Sbjct: 251 VGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLHMDSATLRDAHRRFSPLERL 310 Query: 63 K 63 + Sbjct: 311 R 311 >gi|154000932|gb|ABS57034.1| integrase [uncultured bacterium] Length = 158 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 33/43 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHS AT LL +G D+R++Q +LGHS +STT IYT+V Sbjct: 116 PATPHTLRHSSATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 158 >gi|30908750|gb|AAP37607.1| IntI [uncultured bacterium] Length = 161 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 27/42 (64%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL G D+R+IQ +LGH L+TT IYT+V Sbjct: 120 ASCHTLRHSFATHLLQTGSDIRTIQDLLGHKELTTTMIYTHV 161 >gi|83816861|ref|YP_446969.1| phage integrase family site specific recombinase [Salinibacter ruber DSM 13855] gi|83758255|gb|ABC46367.1| site-specific recombinase, phage integrase family, truncation [Salinibacter ruber DSM 13855] Length = 191 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 32/47 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + HTLRH+FAT L + G +R +Q LGHS LSTT IYT+V + + Sbjct: 138 VSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTTMIYTHVVDEEL 184 >gi|51245830|ref|YP_065714.1| site-specific recombinase (XerD-like) [Desulfotalea psychrophila LSv54] gi|50876867|emb|CAG36707.1| probable site-specific recombinase (XerD-like) [Desulfotalea psychrophila LSv54] Length = 345 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHS+ATHLL G L +Q +LGH + TT+IYT++ K + ++ Sbjct: 284 VTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEIYTHLMKKNVHDV 333 >gi|126466056|ref|YP_001041165.1| phage integrase family protein [Staphylothermus marinus F1] gi|126014879|gb|ABN70257.1| phage integrase family protein [Staphylothermus marinus F1] Length = 333 Score = 84.2 bits (208), Expect = 6e-15, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L +Q +LGHS + TTQIY +V + + YD+ Sbjct: 242 PHILRHTFATQALRKGLSLPYLQRLLGHSDIKTTQIYLHVTIEDIRSEYDK 292 >gi|145306755|ref|YP_001144419.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] gi|144901521|emb|CAM78243.1| integrase/recombinase [Magnetospirillum gryphiswaldense MSR-1] Length = 302 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 35/51 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTLRHSFATHLL +G D+R IQ +LGHS+L T +YT V ++ + + Sbjct: 234 VGPHTLRHSFATHLLEDGVDIRVIQVLLGHSKLENTALYTKVATRTVRTVV 284 >gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6] gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6] Length = 282 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H LRH+FAT +L G DL+S+ ILGH +STT IY + N + + Y + Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHENISTTSIYLHKNKEALQREYQR 276 >gi|92116456|ref|YP_576185.1| phage integrase [Nitrobacter hamburgensis X14] gi|91799350|gb|ABE61725.1| phage integrase [Nitrobacter hamburgensis X14] Length = 289 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 35/52 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL D+R IQ +LGH++L TT +Y V +K + ++ Sbjct: 223 PVSMHTLRHSFATHLLEQNIDIRVIQVLLGHAKLDTTALYARVATKAIQQVM 274 >gi|260599046|ref|YP_003211617.1| Integrase [Cronobacter turicensis z3032] gi|260218223|emb|CBA33120.1| Integrase [Cronobacter turicensis z3032] Length = 339 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLKEILGHADIKMTMIYAHFSPDHLEDAVTK 331 >gi|149200435|ref|ZP_01877450.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200455|ref|ZP_01877470.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136449|gb|EDM24887.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136469|gb|EDM24907.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 33/44 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H+LRHS+ATHL+ G +LR IQ ILGHS +TT IY++++ Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLSK 273 >gi|83816142|ref|YP_445021.1| integron integrase subfamily protein [Salinibacter ruber DSM 13855] gi|83757536|gb|ABC45649.1| integron integrase subfamily [Salinibacter ruber DSM 13855] Length = 318 Score = 83.8 bits (207), Expect = 7e-15, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 33/45 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHSFATHLL +G D+R+IQ +LGH +L TT Y +V + Sbjct: 257 ATCHTLRHSFATHLLQDGTDVRTIQRLLGHEQLRTTMQYVHVLEQ 301 >gi|89147484|gb|ABD62602.1| integrase [uncultured bacterium] Length = 163 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG ++R +Q +LGH + TT IYT+V Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162 >gi|332796945|ref|YP_004458445.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1] gi|332694680|gb|AEE94147.1| XerC/D integrase-recombinase protein [Acidianus hospitalis W1] Length = 286 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT + G L ++Q +LGH + TTQIYT++ + +M+ Y + Sbjct: 229 PHILRHTFATIAIRRGLPLPAVQRLLGHKDIKTTQIYTHLVLEDLMQAYKK 279 >gi|149198071|ref|ZP_01875119.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149198416|ref|ZP_01875461.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149200078|ref|ZP_01877103.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136836|gb|EDM25264.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138422|gb|EDM26830.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149138983|gb|EDM27388.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 294 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 33/44 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H+LRHS+ATHL+ G +LR IQ ILGHS +TT IY++++ Sbjct: 230 VSVHSLRHSYATHLVEAGVNLRVIQEILGHSSPATTAIYSHLSK 273 >gi|294506890|ref|YP_003570948.1| Integrase [Salinibacter ruber M8] gi|294343218|emb|CBH23996.1| Integrase [Salinibacter ruber M8] Length = 261 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRHSFATHLL +G D+R+IQ +LGH +L TT Y +V + ++ Sbjct: 200 ATCHTLRHSFATHLLQDGTDVRTIQKLLGHEQLRTTMQYIHVLEQSGADV 249 >gi|89147512|gb|ABD62616.1| integrase [uncultured bacterium] Length = 163 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG ++R +Q +LGH + TT IYT+V Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162 >gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] Length = 326 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D++ +Q ILGH +STTQIYT+V++ + ++ Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRNAVNK 312 >gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] Length = 326 Score = 83.8 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D++ +Q ILGH +STTQIYT+V++ + ++ Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRSAVNK 312 >gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 279 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHSFATHLL +G D IQ +LGHS L TT IY +V Sbjct: 220 VSVHTLRHSFATHLLESGVDTFYIQKLLGHSSLKTTSIYIHV 261 >gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC 29328] gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328] gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] Length = 326 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D++ +Q ILGH +STTQIYT+V++ + ++ Sbjct: 260 SVHKLRHTAATLMYQYGNVDIKVLQEILGHESVSTTQIYTHVDNNSLRNAVNK 312 >gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 329 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT- 61 + H LRH+ AT L G D+R++Q ILGH ++TT+IYT+VN K + ++ D ++P Sbjct: 259 SVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVNKKALRKMVD-SNPLSKL 317 Query: 62 -----QKDKKN 67 +KD+ N Sbjct: 318 NNYTNKKDENN 328 >gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] Length = 604 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G L ++Q +LGHS + TTQIY ++ + Y Q Sbjct: 232 KLHPHALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIYLHLLVDDVRNQYFQA 286 >gi|332308719|ref|YP_004436569.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 286 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 27/52 (51%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFA HLL + D+R IQ++LGHS+L TT +Y V SK + E+ Sbjct: 227 KVSMHTLRHSFAMHLLEDKVDIRVIQTLLGHSKLETTALYAQVASKLLQEVV 278 >gi|307721075|ref|YP_003892215.1| integron integrase [Sulfurimonas autotrophica DSM 16294] gi|306979168|gb|ADN09203.1| integron integrase [Sulfurimonas autotrophica DSM 16294] Length = 338 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 30/41 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T+H RHS+ATHLL G DLRSIQ +LGH + TT IYT+ Sbjct: 266 VTSHIFRHSYATHLLQTGIDLRSIQELLGHKSVETTMIYTH 306 >gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710] gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710] Length = 333 Score = 83.4 bits (206), Expect = 9e-15, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L +Q +LGHS + TTQ+Y +V + YD+ Sbjct: 242 PHILRHTFATQALKKGLSLPYLQRLLGHSDIKTTQVYLHVTVDDIRSEYDK 292 >gi|215407994|emb|CAS02324.1| integron integrase [uncultured bacterium] Length = 158 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 25/40 (62%), Positives = 31/40 (77%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFAT LL +G D+R++Q +LGHS +STT IY Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIY 155 >gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter smithii ATCC 35061] gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family [Methanobrevibacter smithii ATCC 35061] Length = 302 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRHS+ATHL G +++ IQ +LGHS LSTTQIY+ Sbjct: 257 KITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQ 298 >gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] Length = 326 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + G D++S+Q ILGH ++TTQIYT+VN + +Q Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVNDAMLKNTVEQ 311 >gi|89147574|gb|ABD62646.1| integrase [uncultured bacterium] Length = 163 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 26/40 (65%), Positives = 32/40 (80%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+LRHSFATHLLS G D+R++Q LGH +STT IYT+V Sbjct: 123 CHSLRHSFATHLLSRGYDIRTVQEPLGHKDVSTTMIYTHV 162 >gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23] gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23] Length = 313 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT L+ G L +++ +LGH ++TTQIY + + +R+ E Sbjct: 258 TPHKLRHAYATFLVERGVQLDAVKDLLGHESIATTQIYLHASRERLKEA 306 >gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3] gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron] gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3] Length = 279 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HT RHS+ATHL+ +G D+R ++ +LGH + TT IYT++ + Sbjct: 224 SVHTGRHSYATHLIQSGIDIRIVKELLGHENIKTTMIYTHITDIDKQK 271 >gi|89147508|gb|ABD62614.1| integrase [uncultured bacterium] Length = 163 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRHSFATHLL G ++R +Q +LGH + TT IYT+V Sbjct: 121 VKVHTLRHSFATHLLLQGVNIREVQELLGHKSVETTMIYTHV 162 >gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 326 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + G D++S+Q ILGH ++TTQIYT+VN + +Q Sbjct: 259 TVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQIYTHVNDAMLKNTVEQ 311 >gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] Length = 302 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LRHS+ATHL G +++ IQ +LGHS LSTTQIY+ Sbjct: 257 KITPHILRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQ 298 >gi|167009963|ref|ZP_02274894.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC200] Length = 75 Score = 83.4 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 43/61 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHSFA+H+L + DL +++ +LGH+ +S+TQI T++N +++ ++D+ HP + Sbjct: 15 IHPHILRHSFASHVLDSFKDLLAVKDLLGHADISSTQICTHLNFQQLASVFDKAHPRAKK 74 Query: 63 K 63 K Sbjct: 75 K 75 >gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4] gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4] Length = 348 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+ AT L GGD+R +Q ILGH+ L T YT+V+ K + + ++Q P Sbjct: 276 NVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYTHVSGKSIAKQHEQYSP 332 >gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 379 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RHSFATHL+ G DL+ I+ +LGH + TT++Y ++ +I Sbjct: 318 VYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIADTYKSKI 367 >gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] Length = 324 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ AT + G D+R+IQSILGH+ ++TTQIYT+++ + + Sbjct: 264 TPHKLRHTAATLMYKYGDVDIRTIQSILGHTSVATTQIYTHLDDDDIKK 312 >gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] Length = 290 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S T + LR SFA H+L NG DL+++Q +LG+ + + V+ +M E+Y++ HP Sbjct: 231 LSLTPNILRKSFAQHMLQNGADLKTVQEMLGYEANFGNNLLSLVSRSKMKEVYNKFHPRA 290 >gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] Length = 372 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 311 PHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358 >gi|89147468|gb|ABD62594.1| integrase [uncultured bacterium] Length = 163 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL NG ++R +Q +LGH + TT IYT+V Sbjct: 121 VTVHTLRHSFATHLLLNGTNIREVQELLGHKNVETTMIYTHV 162 >gi|323493805|ref|ZP_08098923.1| integrase [Vibrio brasiliensis LMG 20546] gi|323311939|gb|EGA65085.1| integrase [Vibrio brasiliensis LMG 20546] Length = 342 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGGD+ +++ ILGH+ ++ T Y ++ +++ + +P +D Sbjct: 270 HVLRHTFASHFVMNGGDILTLKEILGHASINQTMTYAHLAPDHLIDAV-KLNPLNKLRDP 328 Query: 66 KN 67 +N Sbjct: 329 QN 330 >gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057] gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057] Length = 372 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 311 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358 >gi|114217147|dbj|BAF31250.1| integron integrase [uncultured bacterium] Length = 148 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/43 (60%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +AHT RHS+ATHLL NG D+R+I +LGH L TT IYT+V Sbjct: 106 KISAHTFRHSYATHLLQNGIDIRTISGLLGHKNLQTTMIYTHV 148 >gi|200388050|ref|ZP_03214662.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605148|gb|EDZ03693.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 337 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T IY + + ++ + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDVITK 330 >gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 290 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T + LR SFA H+L NG DL+++Q +LG+ + + V+ +M E+Y++ HP Sbjct: 231 LPLTPNILRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSLVSRSKMKEVYNKFHPRA 290 >gi|288927178|ref|ZP_06421058.1| phage-related integrase [Prevotella buccae D17] gi|315608604|ref|ZP_07883587.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] gi|288336047|gb|EFC74448.1| phage-related integrase [Prevotella buccae D17] gi|315249707|gb|EFU29713.1| possible tyrosine recombinase [Prevotella buccae ATCC 33574] Length = 342 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 40/66 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHS A HLL G +L I+ ILGH + TT++Y +SK+ E ++T+ SI Sbjct: 258 KISPHCLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEVYARADSKQKREALEKTYTSIL 317 Query: 62 QKDKKN 67 +++ N Sbjct: 318 PQEEDN 323 >gi|197363656|ref|YP_002143293.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095133|emb|CAR60680.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 337 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T IY + + ++ + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDVITK 330 >gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1] gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1] Length = 301 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H +RHS+A+ L +LR +Q LGH+ + TT++Y + + ++Y + P +T Sbjct: 224 ITPHKIRHSYASELYRRSRNLRVVQENLGHASIKTTEVYLHTDVDERRQVYREFFPLVT 282 >gi|13475380|ref|NP_106944.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14026132|dbj|BAB52730.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 302 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL +G D+R IQ +LGH++L++T YT V ++ + + Sbjct: 234 VGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNSTAFYTKVATRTVRTV 283 >gi|119900014|ref|YP_935227.1| integrase [Azoarcus sp. BH72] gi|119672427|emb|CAL96341.1| putative truncated integrase [Azoarcus sp. BH72] Length = 66 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 35/45 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHS ATHLL G D+R++Q +LGH+ +STT IYT+V +K Sbjct: 10 VTVHTLRHSVATHLLEGGYDIRTVQELLGHADVSTTMIYTHVLNK 54 >gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 292 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 220 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 267 >gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] Length = 298 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T + LR+SFA H+L NG D++++Q ++GH +S T+ Y +YD+THP Sbjct: 239 IKFTPNMLRNSFAVHMLQNGADIKTVQELMGHENISITKQYYIEIPSSTKLVYDKTHPRA 298 >gi|296840911|ref|ZP_06899430.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] gi|296839548|gb|EFH23486.1| tyrosine recombinase XerD [Neisseria polysaccharea ATCC 43768] Length = 72 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 27/57 (47%), Positives = 41/57 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + H+LRH+FATHL+ +G DLR +Q +LGH+ L+TTQIYT+V + R+ + + H Sbjct: 15 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 71 >gi|260467249|ref|ZP_05813424.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259028939|gb|EEW30240.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 160 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGHS+L TT +YT V++ + + Sbjct: 93 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLETTALYTKVSTPTIHAV 142 >gi|227355962|ref|ZP_03840354.1| integrase [Proteus mirabilis ATCC 29906] gi|227163950|gb|EEI48852.1| integrase [Proteus mirabilis ATCC 29906] Length = 329 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 ++H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + + + + + +P Sbjct: 269 SSHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFSPEHLEDAV-KFNPLSNNY 327 Query: 64 DK 65 +K Sbjct: 328 EK 329 >gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615] gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615] Length = 324 Score = 83.0 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + + +P Sbjct: 270 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 323 >gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 336 Score = 82.6 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMMEIYDQTH 57 + + H LRHS ATHLL DLR IQS+LGH+ L +TQ Y + ++++ +I D+T Sbjct: 273 TVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLHTGLSEIARKLSKIRDETP 332 Query: 58 PS 59 P+ Sbjct: 333 PA 334 >gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO] gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 276 Score = 82.6 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 31/54 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+ AT+LL G +L+ +Q LGHS L+TT+ Y V M E + Sbjct: 221 ISPHVLRHTAATNLLKKGVNLKIVQEFLGHSSLATTERYLRVTINDMKENLRKA 274 >gi|294505690|ref|YP_003569751.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294342129|emb|CBH22793.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 191 Score = 82.6 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 31/47 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + HTLRH+FAT L G +R +Q LGHS LSTT IYT+V + + Sbjct: 138 VSPHTLRHTFATRLYQETGKIRLVQKALGHSDLSTTMIYTHVVDEEL 184 >gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 324 Score = 82.6 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RH+ AT LL++G L +Q +LGH+ STTQIY V+ +R Y+Q Sbjct: 267 NIYPHIFRHTLATALLNHGARLEDVQDLLGHTNPSTTQIYCKVSPERKKLAYNQH 321 >gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 282 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 34/55 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H LRH+FAT +L G DL+S+ ILGH LSTT IY + N + + Y + Sbjct: 222 IRITPHILRHTFATSMLERGIDLKSLSLILGHEDLSTTSIYLHKNKEALQREYQR 276 >gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11] gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11] Length = 325 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 270 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 318 >gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 372 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 311 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358 >gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|332877255|ref|ZP_08445004.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|332684845|gb|EGJ57693.1| integron integrase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 372 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 311 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358 >gi|262383463|ref|ZP_06076599.1| integrase [Bacteroides sp. 2_1_33B] gi|262294361|gb|EEY82293.1| integrase [Bacteroides sp. 2_1_33B] Length = 420 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + Sbjct: 360 ITFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKA 409 >gi|332521448|ref|ZP_08397902.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 279 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH++ATHL+ G D+R I+ +LGHS + TT IYT+V K + I Sbjct: 223 ITLHSLRHAYATHLMDRGTDVRIIKELLGHSSIKTTLIYTHVTQKTLENI 272 >gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6] gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6] Length = 294 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/48 (58%), Positives = 33/48 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFA HL+ G DLR +Q LGH+ LSTTQIYT + + E Sbjct: 239 TPHTLRHSFAAHLVYEGADLREVQERLGHASLSTTQIYTQMPEPLVRE 286 >gi|307826179|ref|ZP_07656390.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732818|gb|EFO03684.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 328 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 32/49 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+H + NGG++ ++Q ILGH+ +S T Y ++ + + + Sbjct: 275 HVLRHSFASHFIMNGGNILTLQKILGHADISQTMTYAHLAPEHLADAVR 323 >gi|189468256|ref|ZP_03017041.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] gi|189436520|gb|EDV05505.1| hypothetical protein BACINT_04652 [Bacteroides intestinalis DSM 17393] Length = 398 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 40/65 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV ++ ++ H S+ Sbjct: 334 KVSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDATIISDLEKNHSSVH 393 Query: 62 QKDKK 66 +K K Sbjct: 394 RKKGK 398 >gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 304 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|323978150|gb|EGB73236.1| phage integrase [Escherichia coli TW10509] Length = 317 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + + +P Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-KFNP 308 >gi|197344628|gb|ACH69660.1| phage integrase [uncultured bacterium] Length = 291 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 33/51 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTLRHSFATHLL D+R IQ +LGH +L TT +Y V ++ + E+ Sbjct: 232 VAMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTSMYAQVATEVLREVI 282 >gi|120611395|ref|YP_971073.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120589859|gb|ABM33299.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 352 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 +S T H+LRH+FA+HL + L++IQ +LGH L+TT IY + + + ++ DQ HP Sbjct: 270 LSLTPHSLRHAFASHLYQHKAPLKTIQLLLGHEHLATTTIYVSRHFEDDHKLLDQHHPRG 329 Query: 61 TQ 62 Q Sbjct: 330 GQ 331 >gi|163751332|ref|ZP_02158558.1| site-specific recombinase, phage integrase family protein [Shewanella benthica KT99] gi|161328741|gb|EDP99888.1| site-specific recombinase, phage integrase family protein [Shewanella benthica KT99] Length = 312 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 34/46 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 AHT RHSFAT LL +G D+R++Q +LGH+ + TT++YT+V R Sbjct: 257 VKAHTFRHSFATQLLQHGSDIRTVQELLGHTDVKTTELYTHVIGTR 302 >gi|85706620|ref|ZP_01037713.1| probable integrase [Roseovarius sp. 217] gi|85669032|gb|EAQ23900.1| probable integrase [Roseovarius sp. 217] Length = 175 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 34/50 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HTLRHS ATHLL +G D+R IQ +LGHS LSTT YT V + + + Sbjct: 110 KVSVHTLRHSSATHLLESGVDIRVIQVLLGHSNLSTTARYTQVATTTIAK 159 >gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13] Length = 280 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHS+ATH+++NG L IQS+LGH + TT+IY ++ K ++Y + Sbjct: 225 NIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRKDLYSKY 279 >gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FA+ ++ G DL+++Q +LGH TT+IY ++ + E + Sbjct: 231 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLAPHHLKEAIKKF 281 >gi|307821936|ref|ZP_07652168.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307823188|ref|ZP_07653418.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307824260|ref|ZP_07654486.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307825345|ref|ZP_07655564.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307733520|gb|EFO04378.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307734640|gb|EFO05491.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307735963|gb|EFO06810.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736502|gb|EFO07347.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 33/51 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREVV 282 >gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 287 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+FAT +L G DL+S+ ILGH + TT Y + N + + + Y + Sbjct: 229 FRITPHILRHTFATAMLEKGMDLKSLSLILGHEDIKTTSQYLHKNKEALQKEYLKA 284 >gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum ATCC 27405] gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20] gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20] gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313] Length = 330 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+ AT + +G D+R++Q ILGH ++TT+IYT+V+S+++ + Sbjct: 262 STHKLRHTAATLMYKHGNVDIRALQEILGHESIATTEIYTHVDSQQLKNAVE 313 >gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7] gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7] Length = 326 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 3 TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + +N GGD+ +++ ILGH +TT+IYT++ S++M D + Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTHLGSEKMKNTMDVMEDLLK 323 Query: 62 QKD 64 +KD Sbjct: 324 KKD 326 >gi|170694112|ref|ZP_02885267.1| integrase family protein [Burkholderia graminis C4D1M] gi|170696177|ref|ZP_02887311.1| integrase family protein [Burkholderia graminis C4D1M] gi|170138905|gb|EDT07099.1| integrase family protein [Burkholderia graminis C4D1M] gi|170140852|gb|EDT09025.1| integrase family protein [Burkholderia graminis C4D1M] Length = 291 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 34/51 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL D+R IQ +LGH +L TT +YT V + + ++ Sbjct: 232 VSMHTLRHSFATHLLEQKEDIRVIQVLLGHKKLETTSLYTQVATDLLRKVI 282 >gi|94442276|dbj|BAE93637.1| integron integrase [uncultured bacterium] Length = 162 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 304 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11] gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11] Length = 295 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 35/50 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL G D+R IQ +LGH++L+ T YT V +K + + Sbjct: 225 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATKMIRD 274 >gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 343 Score = 82.6 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++Q ILGH+ L+ T Y +++ + + E Sbjct: 277 HVLRHTFASHFMMNGGNILTLQRILGHANLTMTMRYAHLSPEHLQEA 323 >gi|94442298|dbj|BAE93648.1| integron integrase [uncultured bacterium] Length = 162 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RHSFAT LL NG D+R+IQ +LGH +STT IYT+V Sbjct: 120 VGSHAFRHSFATRLLQNGHDIRTIQELLGHKDVSTTMIYTHV 161 >gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171] gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171] gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-] Length = 312 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1] Length = 312 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 326 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+FA+ L NGGDL S+Q I+GHS ++ T+ YT+ + E++ + P + Sbjct: 266 SPHIFRHTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTHFMFDDITELHKKYSPLRKLR 325 Query: 64 D 64 D Sbjct: 326 D 326 >gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75] gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75] Length = 311 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + + +P Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 310 >gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H RH+FAT LS+G D+ ++ +LGH+ + TTQIY V ++ + Sbjct: 355 NITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405 >gi|89147450|gb|ABD62585.1| integrase [uncultured bacterium] Length = 163 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/41 (60%), Positives = 32/41 (78%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFAT LL G D+R+IQ +LGHS ++TT+IYT+V Sbjct: 122 HCHTFRHSFATQLLQKGHDIRTIQELLGHSDVATTEIYTHV 162 >gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 231 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 278 >gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966] gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869] gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010] Length = 312 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180] Length = 233 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + + +P Sbjct: 179 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 232 >gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 282 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHL+ G + R+IQ++LGH +T++Y +V++K +M I Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSLMGI 269 >gi|301308313|ref|ZP_07214267.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|300833783|gb|EFK64399.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 118 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TTQIY + + +E + Sbjct: 59 PITFHTSRHTFATMMLTLGADLYTVSKLLGHANVKTTQIYAKIVDSKKVEAVN 111 >gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22] gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22] Length = 312 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|315615273|gb|EFU95909.1| integrase [Escherichia coli 3431] Length = 343 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFSPDHLEDAVTK 331 >gi|307822466|ref|ZP_07652697.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736070|gb|EFO06916.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 291 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/51 (49%), Positives = 33/51 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATDILREVV 282 >gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G] Length = 312 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 348 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 287 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 334 >gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 321 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+RS+Q +LGH + TT+IYT+V+ +++ ++ Sbjct: 263 SVHKLRHTAATLMYQYGDVDIRSLQKVLGHESVQTTEIYTHVSDEQVKRAIEK 315 >gi|94442260|dbj|BAE93629.1| integron integrase [uncultured bacterium] Length = 162 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|89147561|gb|ABD62640.1| integrase [uncultured bacterium] gi|89147622|gb|ABD62670.1| integrase [uncultured bacterium] Length = 163 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H LRHSFATHLL +G D+R++Q +L H +STT IYT+V Sbjct: 121 VTVHALRHSFATHLLESGYDIRTVQELLSHRHVSTTMIYTHV 162 >gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] Length = 362 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+FAT LL+ DL ++ +LGH + TTQIY + K+ + ++ Sbjct: 304 KISFHTARHTFATMLLTLDVDLYTVSKLLGHKDIKTTQIYAKIIDKKKQDAVNK 357 >gi|305663679|ref|YP_003859967.1| integrase family protein [Ignisphaera aggregans DSM 17230] gi|304378248|gb|ADM28087.1| integrase family protein [Ignisphaera aggregans DSM 17230] Length = 368 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G ++ +Q ILGH L TT+IY ++ + + + Y ++ Sbjct: 243 KVRPHILRHTFATEALKKGLNIAYLQKILGHRDLKTTEIYLHLLREDVKDQYLKS 297 >gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357] Length = 374 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + + +P Sbjct: 320 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAV-RFNPIA 373 >gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 309 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|312882545|ref|ZP_07742286.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] gi|309369945|gb|EFP97456.1| integrase [Vibrio caribbenthicus ATCC BAA-2122] Length = 342 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGGD+ +++ ILGH ++ T Y ++ +++ + +P +D Sbjct: 270 HVLRHTFASHFIMNGGDILTLKEILGHCSINQTMTYAHLAPDHLVDAI-KLNPLSKLRDP 328 Query: 66 KN 67 +N Sbjct: 329 QN 330 >gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 397 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H RH+FAT LL+ G DL ++ +LGHS + TTQIY + +K+ + Sbjct: 337 VTYHVSRHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKKKEDAI 387 >gi|325678006|ref|ZP_08157645.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] gi|324110286|gb|EGC04463.1| site-specific tyrosine recombinase XerC [Ruminococcus albus 8] Length = 326 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Query: 3 TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + +N GGD+ +++ ILGH STT+IYT++ S +M + + Sbjct: 264 VTTHKLRHTAATLMYNNNGGDILAVKEILGHESTSTTEIYTHLGSDKMKNTMNVMEDLLK 323 Query: 62 QKD 64 +KD Sbjct: 324 KKD 326 >gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009] Length = 312 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] Length = 376 Score = 82.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y +++ I Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHISDTFKSSI 360 >gi|163855761|ref|YP_001630059.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259489|emb|CAP41789.1| putative integrase/recombinase [Bordetella petrii] Length = 317 Score = 81.8 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS A HLL G +L I+ +LGHS + TT+IY + + +P + Sbjct: 230 KISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKKAALEMAYPGTS 289 Query: 62 Q 62 + Sbjct: 290 R 290 >gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 288 Score = 81.8 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T LR SFA H+L NG D+RS+Q ILG+ + + + ++ ++ E+Y ++HP Sbjct: 229 FDITPSILRKSFAKHMLENGADIRSVQEILGYKSFNQGDLISLISKSKIKEVYKRSHPRA 288 >gi|94442286|dbj|BAE93642.1| integron integrase [uncultured bacterium] Length = 162 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 120 VGCHTLRHCFATHLLEASHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H +RH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 310 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYD 54 T HTLRHSFA H++ G DLR +Q LGH+ ++TTQ+Y + ++ +I D Sbjct: 244 ITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKSNSHSEKIID 296 >gi|218559583|ref|YP_002392496.1| Integrase [Escherichia coli S88] gi|218366352|emb|CAR04103.1| Integrase [Escherichia coli S88] Length = 339 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + + +P T D Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFSPDHLEDAVTK-NPLATLMD 339 >gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] Length = 296 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+QS+LGH+ L+TT YT + Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRLTQ 271 >gi|94442270|dbj|BAE93634.1| integron integrase [uncultured bacterium] Length = 162 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|94442258|dbj|BAE93628.1| integron integrase [uncultured bacterium] Length = 162 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 120 VGCHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18] gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18] Length = 304 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYCATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|124028392|ref|YP_001013712.1| integrase [Hyperthermus butylicus DSM 5456] gi|123979086|gb|ABM81367.1| possible integrase [Hyperthermus butylicus DSM 5456] Length = 406 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G L ++Q +LGH + TQ+Y ++ ++ + +Y Q Sbjct: 245 KVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQA 299 >gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 336 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T IY + + + + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDAVLK 330 >gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf] gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf] Length = 327 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT L G D+R++Q ILGH +STT IYT+V+ + +++P + Sbjct: 265 TVHKLRHTAATLLYKYGEVDIRNLQVILGHENISTTTIYTHVDKDELRSAL-KSNPLNNK 323 Query: 63 KDK 65 ++ Sbjct: 324 RNN 326 >gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL DL +Q LGH +STTQIYT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVDGQLEEALER 303 >gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S H +RH+ ATHLL++G DL ++Q+ILGH S TQIY +++ + Y + Sbjct: 275 SIYPHLIRHTMATHLLNSGADLGTVQAILGHEDASITQIYAQISNTNVEHEYRKH 329 >gi|332086087|gb|EGI91249.1| integrase [Shigella boydii 5216-82] Length = 312 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 257 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 305 >gi|332090863|gb|EGI95955.1| integrase [Shigella boydii 5216-82] Length = 323 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 270 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVK 318 >gi|89899991|ref|YP_522462.1| phage integrase [Rhodoferax ferrireducens T118] gi|89344728|gb|ABD68931.1| phage integrase [Rhodoferax ferrireducens T118] Length = 291 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 33/51 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HTLRHSFATHLL D+R IQ +LGH+RL TT Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHNRLDTTAQYVQVATDILREVI 282 >gi|323963898|gb|EGB59392.1| phage integrase [Escherichia coli M863] Length = 337 Score = 81.8 bits (202), Expect = 3e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFSPDHLEDAVTK 331 >gi|212694179|ref|ZP_03302307.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224026237|ref|ZP_03644603.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|253572729|ref|ZP_04850129.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254882550|ref|ZP_05255260.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|317480879|ref|ZP_07939960.1| phage integrase [Bacteroides sp. 4_1_36] gi|329965174|ref|ZP_08302105.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|212663245|gb|EEB23819.1| hypothetical protein BACDOR_03705 [Bacteroides dorei DSM 17855] gi|224019473|gb|EEF77471.1| hypothetical protein BACCOPRO_02993 [Bacteroides coprophilus DSM 18228] gi|251837629|gb|EES65720.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254835343|gb|EET15652.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|316902964|gb|EFV24837.1| phage integrase [Bacteroides sp. 4_1_36] gi|328523537|gb|EGF50634.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 415 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH++AT L+NG D+ ++ +LGH+ + TTQIY V K+ E + Sbjct: 356 ITFHCFRHTYATLQLANGTDIYTVSKMLGHTNVKTTQIYAKVIDKKKDEATEAF 409 >gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei 6A8] gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8] Length = 306 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H +RHS+A+ L +LR +Q LGH+ + TT++Y + + ++Y Q P + Sbjct: 243 ITPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERRQVYQQFFPLSSD 302 Query: 63 KD 64 + Sbjct: 303 NE 304 >gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 343 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 1/64 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT-HPSITQ 62 + HT+RH+ ATHLL++G D+ ++++ LGH+ + TT IY ++ + ++ + P++ Sbjct: 266 SPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKALKKCEFPNVKN 325 Query: 63 KDKK 66 ++K Sbjct: 326 PNRK 329 >gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium acetobutylicum ATCC 824] gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 299 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%) Query: 6 HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FAT L +G DL +Q +LGH +STT+IYT+V+ +++ + +P Sbjct: 242 HILRHTFATLLYQSGEVDLFQLQELLGHEDVSTTRIYTDVSKEQLKNAVE-ANPLNK 297 >gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68] Length = 285 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 230 HALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 278 >gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 420 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + Sbjct: 360 ITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQKEKA 409 >gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 325 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + + E Sbjct: 267 HVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRYAHLAPEHLNEAVQ 315 >gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 310 Score = 81.5 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA+ L DL+ +Q +LGH+ +STTQIYT+ + K+ + + Sbjct: 253 KITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIKE 306 >gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 324 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FA+ ++ G DL+++Q +LGH TT+IY +++ + + E + Sbjct: 272 HDLRHTFASLMVMAGVDLKTVQELLGHQSYRTTEIYAHLSPQHLHEAIKKF 322 >gi|224538580|ref|ZP_03679119.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] gi|224519804|gb|EEF88909.1| hypothetical protein BACCELL_03474 [Bacteroides cellulosilyticus DSM 14838] Length = 397 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV ++ ++ H Sbjct: 333 KVSFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNVMDMTIISDLEKNHSLAH 392 Query: 62 QKDKK 66 +K K Sbjct: 393 RKKGK 397 >gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] Length = 288 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H LRH+FA LL +G D+ ++Q ILGH+ L+TT +Y + E ++ Sbjct: 228 VEVSPHQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVYLKPDYAEQEEAVEK 282 >gi|315608575|ref|ZP_07883559.1| integrase/recombinase [Prevotella buccae ATCC 33574] gi|315249746|gb|EFU29751.1| integrase/recombinase [Prevotella buccae ATCC 33574] Length = 343 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+ RHS A HLL G +L I+ ILGH+ + TT+IY + +SK+ + ++ + +IT Sbjct: 259 KISPHSFRHSKAMHLLQAGVNLVYIRDILGHASIKTTEIYAHADSKQKRDALEKAYANIT 318 Query: 62 QKDKK 66 + + Sbjct: 319 PERPE 323 >gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 304 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FATHL S DL +Q LGH +STTQ+YT++ ++ E ++ Sbjct: 252 TPHGLRHTFATHLYSATNDLLVVQRALGHRDVSTTQVYTHLVDGQLEEALER 303 >gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHL+ G + R+IQ++LGH +T++Y +V++K +M I Sbjct: 220 VTPHCLRHSFATHLMEQGVEQRNIQALLGHRDPKSTEVYLHVSNKSIMGI 269 >gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 376 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360 >gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 347 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+FAT L + G D+ +IQ +LGH ++TTQ+Y ++ + + Sbjct: 290 ITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHIGDREKKRAIE 341 >gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl] gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl] Length = 286 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 31/44 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRHSFA H L NG DLR +Q LGH+ ++TTQ+Y ++ + Sbjct: 241 TPHMLRHSFAAHQLRNGVDLRELQERLGHASIATTQMYAHLAEE 284 >gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 239 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 178 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 225 >gi|271499297|ref|YP_003332322.1| integrase family protein [Dickeya dadantii Ech586] gi|270342852|gb|ACZ75617.1| integrase family protein [Dickeya dadantii Ech586] Length = 363 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITK 331 >gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 352 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RH+ AT L GGD+R +Q +LGH+ L YT+++ + ++ +D+ P Sbjct: 280 NVHPHLFRHTGATMFLEAGGDIRHLQMLLGHADLRMVMRYTHLSKQALINQHDKFSP 336 >gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 277 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HTLRH+FA HL G + IQ +LGH+ +++T+IYT + + + YDQ Sbjct: 220 FKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANINSTRIYTRLMNHARKKQYDQY 275 >gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 357 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS+ATHLL G D+ IQ +LGH+ + TT +Y V + ++ I Sbjct: 303 HGLRHSYATHLLEYGTDISFIQQLLGHNDIKTTMLYAKVGNAQLNAI 349 >gi|254436138|ref|ZP_05049645.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27] gi|207089249|gb|EDZ66521.1| hypothetical protein NOC27_3201 [Nitrosococcus oceani AFC27] Length = 87 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 34/45 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AHT RHSFATHLL G D+R+IQ +LGH L TT IYT+V ++ Sbjct: 29 VSAHTFRHSFATHLLQRGIDIRTIQDLLGHRDLETTMIYTHVLNQ 73 >gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 374 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 309 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 358 >gi|296273270|ref|YP_003655901.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097444|gb|ADG93394.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 351 Score = 81.5 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 30/45 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHSFAT L N DL +Q LGH+ ++T++IYT+ + R+ Sbjct: 300 PHMLRHSFATLLYQNSHDLILVQESLGHADINTSRIYTHFDKNRL 344 >gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510] gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510] Length = 376 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360 >gi|296241818|ref|YP_003649305.1| integrase family protein [Thermosphaera aggregans DSM 11486] gi|296094402|gb|ADG90353.1| integrase family protein [Thermosphaera aggregans DSM 11486] Length = 339 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G L S+Q +LGH+ + TTQ+Y ++ + + Y + Sbjct: 242 PHVLRHTFATRALRLGISLPSLQRLLGHTDIRTTQVYLHLTIDDIKKEYRE 292 >gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 376 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360 >gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421] Length = 289 Score = 81.1 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T TLRHSFA HLL G DL +++ +LGH+ L+TT IYT R+ Y P Sbjct: 228 PVTPDTLRHSFAVHLLEGGADLATVRELLGHASLATTGIYT-----RLARNYAVGRPRA 281 >gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 308 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 236 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 283 >gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2] Length = 338 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T IY + + + + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKDILGHSDIKMTMIYAHFAPTHLEDAVTK 330 >gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22] gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22] Length = 376 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360 >gi|260462709|ref|ZP_05810915.1| phage integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031615|gb|EEW32885.1| phage integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 106 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 36/50 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGHS+L TT +YT V+++ + + Sbjct: 39 VSPHTLRHSFATHLLEQDVDIRVIQVLLGHSKLDTTALYTKVSTRTIHAV 88 >gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841] gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841] Length = 376 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 311 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 360 >gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] Length = 329 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R+++ ILGH+ +STTQIYT+++++ + ++ Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHASVSTTQIYTHLDNEDLKNAVNK 321 >gi|110597335|ref|ZP_01385623.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM 13031] gi|110341171|gb|EAT59639.1| integrase/recombinase-related protein [Chlorobium ferrooxidans DSM 13031] Length = 71 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 28/51 (54%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S T H LRHS+ATHLL G DLR IQ +LGH TT+IYT+V + +++I Sbjct: 14 SVTLHWLRHSYATHLLEAGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 64 >gi|254512553|ref|ZP_05124619.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221532552|gb|EEE35547.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 158 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 35/50 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL G D+R IQ +LGH++L+ T YT V +K + + Sbjct: 88 PATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTITAQYTKVATKMIRD 137 >gi|307129611|ref|YP_003881627.1| Phage integrase [Dickeya dadantii 3937] gi|306527140|gb|ADM97070.1| Phage integrase [Dickeya dadantii 3937] Length = 363 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITK 331 >gi|260462714|ref|ZP_05810920.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031620|gb|EEW32890.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 280 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHSFATHLL +G D+R IQ +LGH++L+ T +Y V ++ + + Sbjct: 197 VGPHTLRHSFATHLLEDGTDIRIIQVLLGHAKLNNTALYAKVATRTVRTV 246 >gi|90580685|ref|ZP_01236489.1| Tn554, transposase A [Vibrio angustum S14] gi|90438142|gb|EAS63329.1| Tn554, transposase A [Vibrio angustum S14] Length = 359 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + T H RH+ AT LL G DL IQ LGHS + TT IY +++S M + + Sbjct: 297 IDVTPHIFRHTHATELLRAGWDLAYIQKRLGHSDIQTTANIYAHLSSDDMKKELAKF 353 >gi|308271068|emb|CBX27678.1| Integrase/recombinase [uncultured Desulfobacterium sp.] Length = 192 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 +AHT HSFA+HLL D+R+IQ +LGHS + TT IYT+ V S+ + E Sbjct: 136 ASAHTFHHSFASHLLQANYDIRTIQELLGHSDVRTTMIYTHTVKSRTLKEA 186 >gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C] gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C] Length = 386 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+A+ L+ G + ++ +LGHS +STTQ+Y +V+ KR+ E Sbjct: 328 ITPHKLRHSYASALVEAGRGIDEVKELLGHSSISTTQVYVHVSRKRLEEA 377 >gi|118465318|ref|YP_880052.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] gi|118166605|gb|ABK67502.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] Length = 160 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH + T LL +G DLR++Q +L H LSTTQIYT V +R + +P Sbjct: 98 VRGTPHGLRHWYGTTLLDDGADLRTVQELLRHRSLSTTQIYTRVTDERRAAAVGRLNP 155 >gi|89147482|gb|ABD62601.1| integrase [uncultured bacterium] Length = 163 Score = 81.1 bits (200), Expect = 5e-14, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATHLL G ++R +Q +LGH TT IYT+V Sbjct: 121 ATVHTLRHSFATHLLMAGTNIREVQELLGHKSAETTMIYTHV 162 >gi|163855344|ref|YP_001629642.1| tyrosine recombinase xerD [Bordetella petrii DSM 12804] gi|163855612|ref|YP_001629910.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259072|emb|CAP41371.1| Tyrosine recombinase xerD [Bordetella petrii] gi|163259340|emb|CAP41640.1| putative integrase/recombinase [Bordetella petrii] Length = 349 Score = 80.7 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS A HLL G +L I+ +LGHS + TT+IY + + +P + Sbjct: 262 KISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDIKTTEIYARADLDSKKAALEMAYPGTS 321 Query: 62 Q 62 + Sbjct: 322 R 322 >gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 299 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH LSTT Y + + ++ Sbjct: 226 PVTPHSLRHAFACHLLEAGTDIRTIQLLLGHRSLSTTSQYLRIATSKV 273 >gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4] gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4] Length = 362 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + TAH LRHSFAT L++ G D+ ++QS+LGH ++TTQ+Y +V E + Sbjct: 305 TITAHKLRHSFATALVAKGVDVLTVQSLLGHESVATTQVYAHVQDDARKEAITR 358 >gi|330502138|ref|YP_004379007.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328916424|gb|AEB57255.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 342 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ ++Q ILGHS L+ T Y ++ + + E Sbjct: 273 HALRHTFASHFMQKGGNILTLQKILGHSSLAMTMRYAHLAPEHLAEAVK 321 >gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P] gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P] Length = 350 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + + Sbjct: 280 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFAPDHLEDAVR 330 >gi|30908752|gb|AAP37608.1| IntI [uncultured bacterium] Length = 161 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 25/43 (58%), Positives = 32/43 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLRHS ATHLL +G D+R+I +LGH +STT IYT+V Sbjct: 119 NAGPHTLRHSXATHLLQDGYDIRTIHDLLGHKEISTTMIYTHV 161 >gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] Length = 353 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H RH+ AT L NGGD+R +Q++LGH + + YT+++ + E + + P + Sbjct: 279 KVHPHLFRHTGATMYLENGGDIRHLQAMLGHRDMRMVKRYTHLSKSSLKEQHSKHSPLVQ 338 Query: 62 QKDKKN 67 +K N Sbjct: 339 ITEKLN 344 >gi|204929529|ref|ZP_03220603.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321248|gb|EDZ06448.1| phage integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 341 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAVTK 331 >gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217] gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217] Length = 296 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+Q +LGH+ L+TT YT + + Sbjct: 227 SISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTT 271 >gi|94442274|dbj|BAE93636.1| integron integrase [uncultured bacterium] Length = 162 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 24/40 (60%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL D+R++Q +LGH+ +STT IYT+V Sbjct: 122 CHTLRHCFATHLLEANHDIRTVQELLGHAHVSTTMIYTHV 161 >gi|34335022|gb|AAQ64997.1| unknown [synthetic construct] gi|301159296|emb|CBW18811.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131081|gb|ADX18511.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 341 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T IY + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAVTK 331 >gi|13474989|ref|NP_106548.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025735|dbj|BAB52334.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 82 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 28/49 (57%), Positives = 35/49 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHSFATHLL NG D+R IQ +LGH+ LS+T YT V++ + Sbjct: 18 VTVHTLRHSFATHLLENGTDIRIIQVLLGHNNLSSTARYTKVSNGLIRR 66 >gi|146300388|ref|YP_001194979.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154806|gb|ABQ05660.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H RH+FAT LS+G D+ ++ +LGH+ + TTQIY V ++ Sbjct: 355 NITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVIDEKKNRA 405 >gi|34557587|ref|NP_907402.1| integrase-recombinase protein XERCD family [Wolinella succinogenes DSM 1740] gi|34483304|emb|CAE10302.1| INTEGRASE-RECOMBINASE PROTEIN XERCD FAMILY [Wolinella succinogenes] Length = 363 Score = 80.7 bits (199), Expect = 6e-14, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E +T K Sbjct: 302 AHMLRHSFATLLYQKKRDLVLVQEALGHADLNTSRIYTHFDRERLREAASLMD-DLTPKK 360 Query: 65 KKN 67 K+N Sbjct: 361 KEN 363 >gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 346 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTH 57 + H LRH+FAT L G DL +Q +LGH + TQ Y + + + + E I ++ H Sbjct: 266 IDVRFHDLRHTFATRLAQAGVDLYKVQRLLGHKSAAMTQRYAHHSPESLREGVLILERIH 325 Query: 58 PSITQK 63 P I+Q Sbjct: 326 PEISQN 331 >gi|255692294|ref|ZP_05415969.1| phage-related integrase [Bacteroides finegoldii DSM 17565] gi|260622027|gb|EEX44898.1| phage-related integrase [Bacteroides finegoldii DSM 17565] Length = 341 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HTLRHS A HLL G +L I+ ILGH + TT+IY +SK+ E + + ++ Sbjct: 258 KISPHTLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALESAYVNMI 317 Query: 62 QKD 64 D Sbjct: 318 PND 320 >gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 297 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 35/50 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRH FA+HLL G DLR+IQ +LGH++L T +Y +++ K + + Sbjct: 224 VSPHTLRHCFASHLLEAGTDLRTIQMLLGHAKLEHTAMYLHLSRKHLTAV 273 >gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 31/55 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S H LRH+ AT L +G D+ +IQ +LGH+ STTQIY + + Y Q Sbjct: 275 SVYPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYAETSLDNLKHEYKQH 329 >gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] Length = 386 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+FA +L G D+ ++ +LGH LSTTQIY V K + P+I Sbjct: 322 KITFHCARHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQKAVSSI-PNIL 380 Query: 62 QKDKKN 67 + + K+ Sbjct: 381 ENENKS 386 >gi|41406204|ref|NP_959040.1| hypothetical protein MAP0106c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394552|gb|AAS02423.1| hypothetical protein MAP_0106c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 343 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSF +H+ +G D R +Q I GH STT IYT+V + M ++ Sbjct: 277 KLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFMNKMLTDA 331 >gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum K10] Length = 287 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 24/40 (60%), Positives = 33/40 (82%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFA HL+S+G D++++Q ILGHS ++TTQ+Y Sbjct: 237 ITPHTLRHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41] gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 80.7 bits (199), Expect = 7e-14, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 36/55 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K ++Y + Sbjct: 183 SIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDLYSKY 237 >gi|332983016|ref|YP_004464457.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332700694|gb|AEE97635.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 290 Score = 80.3 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 ++ H LRH+FAT LL +G DL +++ +LGH+ ++TT IYT N + M + ++ Sbjct: 232 VNVYPHKLRHTFATKLLRDGGVDLVTVKELLGHTSINTTAIYTKANKQDMEKAVEK 287 >gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 337 Score = 80.3 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+FA+ L G D+ +IQ +LGH ++TTQ+Y ++ +R Sbjct: 283 VTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGDERKKHAI 333 >gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 346 Score = 80.3 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FAT NG + +Q ++GH+ ++TT+ Y ++ + E + + P Sbjct: 279 TVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSPLTR 338 Query: 62 QKDKK 66 +K Sbjct: 339 LTSRK 343 >gi|206578539|ref|YP_002237615.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] gi|206567597|gb|ACI09373.1| site-specific recombinase, phage integrase family [Klebsiella pneumoniae 342] Length = 338 Score = 80.3 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 38/64 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT+RH+ ATHLL G D+ +I++ LGH L+TT IY V+ + ++ P + Sbjct: 260 VSPHTIRHTTATHLLRAGVDINTIRAWLGHVSLATTLIYAEVDIQMKIQALKMCEPHQKE 319 Query: 63 KDKK 66 + +K Sbjct: 320 QLRK 323 >gi|145298598|ref|YP_001141439.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851370|gb|ABO89691.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 351 Score = 80.3 bits (198), Expect = 7e-14, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q ILGHS ++ T Y + + + Sbjct: 293 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFAPDHLEDAVR 341 >gi|229006394|ref|ZP_04164069.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4] gi|228754858|gb|EEM04228.1| Tyrosine recombinase xerD [Bacillus mycoides Rock1-4] Length = 44 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 33/44 (75%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + NG DLR++Q +LGH+ +STTQIYT+V+ R+ ++Y Q HP Sbjct: 1 MENGADLRAVQEMLGHADISTTQIYTHVSKARLKDVYKQFHPRA 44 >gi|253688998|ref|YP_003018188.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755576|gb|ACT13652.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 335 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHSFA+H + NGG++ +Q ILGHS ++ T Y + + + Sbjct: 276 HVLRHSFASHFMMNGGNILVLQQILGHSTITMTMRYAHFSPDHL 319 >gi|149200530|ref|ZP_01877541.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149136379|gb|EDM24821.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 400 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 6/53 (11%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 +LRHSFA H+L G D+R++Q++LGH + TT IY+ + + HP Sbjct: 345 SLRHSFAVHMLEAGYDIRTVQTLLGHQDVKTTMIYSKLAK------VGKVHPK 391 >gi|325001050|ref|ZP_08122162.1| integrase family protein [Pseudonocardia sp. P1] Length = 348 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LRHS+ THL +G D R IQ +GH ++T IYT+V+S M Q Sbjct: 280 SPHSLRHSYVTHLTEDGVDRRFIQEAVGHRCDTSTAIYTHVSSDFMNTALRQA 332 >gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185] gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185] Length = 296 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + + H+LRHS+ATHLL G DLRS+Q++LGH L+TT YT + Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271 >gi|313148284|ref|ZP_07810477.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137051|gb|EFR54411.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 337 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT+RH+ ATHLL +G D+ +I++ LGH ++TT IY VN + + Sbjct: 259 VSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVNMEMKAKALSNC 312 >gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08] gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08] Length = 280 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 35/47 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+H RHSFA+HLL +G D++ IQ++LGH +T+IY +V++K + Sbjct: 221 VTSHAFRHSFASHLLEDGCDIKYIQALLGHLDPKSTEIYLHVSNKTL 267 >gi|255010479|ref|ZP_05282605.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 338 Score = 80.3 bits (198), Expect = 8e-14, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT+RH+ ATHLL +G D+ +I++ LGH ++TT IY VN + + Sbjct: 260 VSPHTIRHTTATHLLQSGVDINTIRAWLGHVSINTTNIYAEVNMEMKAKALSNC 313 >gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 334 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+ AT L +G D+ IQS+LGH+ STTQIY + + Y Q Sbjct: 280 PHLLRHTMATLSLQSGADITIIQSLLGHTTPSTTQIYAENSLDNLKHEYKQH 331 >gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%) Query: 1 MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 M + H LRH+ AT L G DL ++ +LGH+ + TT+IYT+V++K++ E + +P Sbjct: 265 MGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGHANVGTTEIYTHVSNKKVQEAAAK-NPL 323 Query: 60 ITQKDK 65 +K + Sbjct: 324 AHKKKR 329 >gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 338 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 ++H LRH+FA+H + +GG++ +Q ILGH+ + T Y++ + + E + +P K Sbjct: 280 SSHVLRHTFASHFMMSGGNILVLQRILGHTDIKMTMRYSHFSPNHLSEAVE-FNPLQKIK 338 >gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] Length = 301 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME-IYD 54 + H RH+FAT L++G D+R++Q++LGH+ + TT YT+ + M + +Y+ Sbjct: 243 SPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTHPDLAMMAQAVYN 294 >gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 381 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RHSFAT +L+ G DL + +LGHS + TTQIY + + +E + Sbjct: 322 KITYHTSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKIVDSKKVEAVN 374 >gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] Length = 329 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R+++ ILGH+ +STTQIYT+++ + + ++ Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIYTHLDDEDLKNAVNK 321 >gi|323190945|gb|EFZ76212.1| integrase [Escherichia coli RN587/1] Length = 346 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + + + + +P +K+ Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAV-RLNPLKCRKN 342 >gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 379 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ G LR IQ+ LGH+ TT+IYT V N+K + D + S+ Sbjct: 311 TPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDTMYESV 370 Query: 61 TQKDKK 66 + + K Sbjct: 371 SLDENK 376 >gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3] Length = 321 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + + H LRH+FAT LL+NG L I+ +LGH + TT IY +++R+ Sbjct: 252 TVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRRV 299 >gi|293433077|ref|ZP_06661505.1| integrase bacteriophage origin [Escherichia coli B088] gi|291323896|gb|EFE63318.1| integrase bacteriophage origin [Escherichia coli B088] Length = 346 Score = 80.3 bits (198), Expect = 9e-14, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + + + + +P +K+ Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAV-RLNPLKCRKN 342 >gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita] gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita] gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3] Length = 297 Score = 79.9 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AH LRH F T LL G DLR++Q ++ H L++T+IYT V +R E ++ P Sbjct: 211 SAHCLRHWFGTALLEAGVDLRTVQELMRHQSLTSTEIYTRVTDQRRAEGIERLDP 265 >gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 292 Score = 79.9 bits (197), Expect = 9e-14, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 219 PVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKV 266 >gi|194449832|ref|YP_002047249.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408136|gb|ACF68355.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 345 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E + +P +K Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEAL-KLNPLKCRKS 341 >gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] Length = 324 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L G L +Q +LGHS + TQ+Y ++ + + Y++ Sbjct: 232 KVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLDEDVRREYERA 286 >gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002] gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002] Length = 330 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ +Q ILGH L+ T Y ++ + E Sbjct: 275 HVLRHTFASHFVMNGGNILVLQKILGHQSLTMTIRYAHLAPDHLQEA 321 >gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] Length = 294 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHL+ G DL+ ++ +LGH++L TT++Y ++ I Sbjct: 229 VYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIADTFKSSI 278 >gi|163752268|ref|ZP_02159468.1| transposase [Shewanella benthica KT99] gi|161327851|gb|EDP99031.1| transposase [Shewanella benthica KT99] Length = 506 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+Q++LGH+ L+TT YT + Sbjct: 73 SISPHNLRHSYATHLLEQGLDLRSVQTLLGHNSLNTTARYTRLTQ 117 >gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16] Length = 243 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + H LRH+FA + +GGD+ + +L HS + TT+IY + S + ++ + +P Sbjct: 181 IKVSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHYFSNTLKDMNEAHNP 238 >gi|218704195|ref|YP_002411714.1| Integrase from bacteriophage origin [Escherichia coli UMN026] gi|218431292|emb|CAR12170.1| Integrase from bacteriophage origin [Escherichia coli UMN026] Length = 351 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + + + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQKILGHADITMTMRYAHFAPSHLEDAVR 333 >gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 366 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+R +Q ILGHS ++TT+IYT++++ + ++ +P + Sbjct: 305 TPHKLRHTAATLMYKYGHVDIRMLQQILGHSSVATTEIYTHLDADSLHNAVEK-NPLADE 363 Query: 63 KD 64 + Sbjct: 364 RS 365 >gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565] gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565] Length = 321 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q ILGHS ++ T Y + + + Sbjct: 263 HVLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFAPDHLEDAIR 311 >gi|167628727|ref|YP_001679226.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167630972|ref|YP_001681471.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167591467|gb|ABZ83215.1| phage integrase [Heliobacterium modesticaldum Ice1] gi|167593712|gb|ABZ85460.1| phage integrase [Heliobacterium modesticaldum Ice1] Length = 341 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHS A HLL G +L I+ LGH+ + TT+IY +S+ + Sbjct: 259 VSPHMLRHSKAMHLLQAGVNLVYIRDWLGHASVKTTEIYARADSEMKRAALQKA 312 >gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 367 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 M+ H LRH+FA+HL+ NG DL ++ +LGH L+ T Y+++ + + ++ Sbjct: 296 MNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVER 350 >gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1] gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 338 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +++ ILGHS L+ T Y +++ + + + Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIR 321 >gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] Length = 295 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + + + Sbjct: 227 PISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 277 >gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] Length = 338 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +++ ILGHS L+ T Y +++ + + + Sbjct: 273 HVLRHTFASHFMMNGGNILALKEILGHSSLNMTMRYAHLSPEYLRDAIR 321 >gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein [Methanocorpusculum labreanum Z] gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z] Length = 320 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H +RHS+A+ L +LR +Q LGH+ + TT+IY + + + Y P Sbjct: 260 ITPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAYRSYFPLA 317 >gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195] gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195] gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678] Length = 296 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + + H+LRHS+ATHLL G DLRS+Q++LGH L+TT YT + Sbjct: 227 AISPHSLRHSYATHLLEQGLDLRSVQTLLGHHSLNTTARYTRLTD 271 >gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA] gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA] Length = 285 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 34/47 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRHSFA+HL +G D++ IQ++LGH +T+IY +V++K + Sbjct: 226 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTL 272 >gi|167841613|ref|ZP_02468297.1| integrase family protein [Burkholderia thailandensis MSMB43] Length = 739 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FA H L G DLR +Q +LGH+ L+TT YT ++ R + + Sbjct: 554 ASTHWLRHTFANHGLDAGADLRDMQELLGHASLATTTRYTKADAARQFQSVEAF 607 >gi|322614413|gb|EFY11344.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621522|gb|EFY18375.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624383|gb|EFY21216.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626580|gb|EFY23385.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633558|gb|EFY30300.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638399|gb|EFY35097.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322647302|gb|EFY43798.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649302|gb|EFY45739.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655977|gb|EFY52277.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661373|gb|EFY57598.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662570|gb|EFY58778.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666944|gb|EFY63119.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671314|gb|EFY67437.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677679|gb|EFY73742.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681494|gb|EFY77524.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683894|gb|EFY79904.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195464|gb|EFZ80642.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197494|gb|EFZ82631.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203015|gb|EFZ88047.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205255|gb|EFZ90230.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210594|gb|EFZ95478.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218124|gb|EGA02836.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221609|gb|EGA06022.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227630|gb|EGA11785.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230888|gb|EGA15006.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234760|gb|EGA18846.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238800|gb|EGA22850.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241499|gb|EGA25530.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248355|gb|EGA32291.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252880|gb|EGA36714.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256999|gb|EGA40708.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260527|gb|EGA44138.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264415|gb|EGA47921.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269549|gb|EGA53002.1| Integrase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 339 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ ++ ILGHS + T +Y++ + + + + +P T D Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYSHFSPDHLEDAVTK-NPLATLMD 339 >gi|169344270|ref|ZP_02865251.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] gi|169297601|gb|EDS79702.1| tyrosine recombinase [Clostridium perfringens C str. JGS1495] Length = 109 Score = 79.9 bits (197), Expect = 1e-13, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 2/61 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRH+ AT + G D+RS+Q+ILGH +STTQIYT+V+ + + E +T+P Sbjct: 50 TPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTTQIYTHVDDETLREAV-KTNPLANI 108 Query: 63 K 63 K Sbjct: 109 K 109 >gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 293 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT+++ G DL ++ ILGH+ L+TT IYT + K MME ++ Sbjct: 236 LDIHPHVLRHTAATNMIRTGADLVTVAQILGHANLNTTAIYTKPDRKTMMEALEK 290 >gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922] gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922] Length = 355 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LRHS+ATHLL G D+ IQ +LGH + TT YT+V++ + + Sbjct: 297 NVGIHSLRHSYATHLLELGTDISHIQKLLGHESIKTTLSYTHVSNHTLRSVI 348 >gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9] gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9] Length = 295 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + + + Sbjct: 227 PISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 277 >gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] Length = 282 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 T HTLRHSFA HL+ G D++++Q ILGHS ++TTQ+Y Sbjct: 237 ITPHTLRHSFAAHLIGGGADMKAVQVILGHSDVATTQMYA 276 >gi|298388233|ref|ZP_06997754.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259008|gb|EFI01911.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 170 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 109 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 156 >gi|148978334|ref|ZP_01814839.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] gi|145962493|gb|EDK27771.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] Length = 342 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +++ ILGH+ ++ T Y ++ +++ + +P +D Sbjct: 270 HVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLIDAV-KLNPLSRLRDP 328 Query: 66 KN 67 +N Sbjct: 329 QN 330 >gi|37677230|ref|NP_937626.1| putative integrase [Vibrio vulnificus YJ016] gi|37201775|dbj|BAC97596.1| putative integrase [Vibrio vulnificus YJ016] Length = 296 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 25/50 (50%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + ++ + Sbjct: 228 ITPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTQLTQLKLHDA 277 >gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] Length = 283 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHSFATHL+ G + ++IQ++LGH +T++Y +V++K +M I Sbjct: 220 KATPHCLRHSFATHLMEQGVERQNIQALLGHRDPKSTEVYLHVSNKSLMGI 270 >gi|152987232|ref|YP_001350376.1| prophage CP-933T integrase [Pseudomonas aeruginosa PA7] gi|150962390|gb|ABR84415.1| integrase for prophage CP-933T [Pseudomonas aeruginosa PA7] Length = 371 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 32/49 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGGD+ ++Q +LGH+ L T Y + + + E+ + Sbjct: 291 HVLRHTFASHYMMNGGDILTLQRVLGHATLQMTMRYAHFSPGHLAEVVN 339 >gi|296165373|ref|ZP_06847914.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899264|gb|EFG78729.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 373 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSF +H+ +G D R +Q I GH STT IYT+V + M ++ Sbjct: 307 KLTPHCFRHSFISHMTEDGVDPRFLQEISGHRFASTTGIYTHVTGEFMNKMLTDA 361 >gi|212695142|ref|ZP_03303270.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] gi|212662319|gb|EEB22893.1| hypothetical protein BACDOR_04680 [Bacteroides dorei DSM 17855] Length = 353 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+LRHS A HLL G +L I+ ILGH + TT+IY +SK+ E + + + Sbjct: 273 KLSPHSLRHSKAMHLLQAGVNLVYIRDILGHESVLTTEIYARTDSKQKREAIENAYVDVI 332 Query: 62 QKD 64 K+ Sbjct: 333 NKE 335 >gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 279 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 24/44 (54%), Positives = 33/44 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + T HTLRHS+ATHLL NG D +++ ILGHS ++TT IY ++ Sbjct: 218 TATVHTLRHSYATHLLENGEDSATLKEILGHSSITTTNIYLHMT 261 >gi|294634567|ref|ZP_06713102.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] gi|291092081|gb|EFE24642.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] Length = 345 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEA 330 >gi|308070088|ref|YP_003871693.1| integrase/recombinase y4qK [Paenibacillus polymyxa E681] gi|305859367|gb|ADM71155.1| Putative integrase/recombinase y4qK [Paenibacillus polymyxa E681] Length = 358 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/36 (63%), Positives = 27/36 (75%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 + H+LRHSFATHLL NG DLR IQ +LGH + TT Sbjct: 318 VSIHSLRHSFATHLLENGIDLRYIQELLGHQSVRTT 353 >gi|212702804|ref|ZP_03310932.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098] gi|212673666|gb|EEB34149.1| hypothetical protein DESPIG_00836 [Desulfovibrio piger ATCC 29098] Length = 447 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQT 56 HTLRH+FAT +L G D+ ++++++GH+ ++TT+IY ++ + + + Sbjct: 382 HTLRHTFATRMLEAGLDIYALKTLMGHASVTTTEIYLHICDMDKRRAALAKA 433 >gi|320188610|gb|EFW63272.1| Integrase [Escherichia coli O157:H7 str. EC1212] Length = 333 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325 >gi|293410219|ref|ZP_06653795.1| conserved hypothetical protein [Escherichia coli B354] gi|291470687|gb|EFF13171.1| conserved hypothetical protein [Escherichia coli B354] Length = 333 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325 >gi|260855846|ref|YP_003229737.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257754495|dbj|BAI25997.1| integrase [Escherichia coli O26:H11 str. 11368] gi|323152673|gb|EFZ38948.1| integrase [Escherichia coli EPECa14] Length = 333 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325 >gi|218695473|ref|YP_002403140.1| Integrase [Escherichia coli 55989] gi|218352205|emb|CAU97951.1| Integrase [Escherichia coli 55989] Length = 333 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325 >gi|189405329|ref|ZP_02814784.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] gi|261258240|ref|ZP_05950773.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. FRIK966] gi|189370712|gb|EDU89128.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC869] Length = 333 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325 >gi|195939942|ref|ZP_03085324.1| putative integrase [Escherichia coli O157:H7 str. EC4024] Length = 291 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 235 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 283 >gi|15802318|ref|NP_288344.1| integrase for prophage CP-933T [Escherichia coli O157:H7 EDL933] gi|15831871|ref|NP_310644.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|187776266|ref|ZP_02801548.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188024649|ref|ZP_02772961.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189404109|ref|ZP_02787302.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189406250|ref|ZP_02827228.2| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194430421|ref|ZP_03062905.1| integrase for prophage CP-933T [Escherichia coli B171] gi|208810345|ref|ZP_03252221.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208816796|ref|ZP_03257916.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208819521|ref|ZP_03259841.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209395701|ref|YP_002270994.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217328885|ref|ZP_03444966.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254793532|ref|YP_003078369.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|331683415|ref|ZP_08384016.1| integrase [Escherichia coli H299] gi|12515975|gb|AAG56898.1|AE005412_8 integrase for prophage CP-933T [Escherichia coli O157:H7 str. EDL933] gi|13362085|dbj|BAB36040.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|187768066|gb|EDU31910.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4196] gi|188017419|gb|EDU55541.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4113] gi|189367364|gb|EDU85780.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4501] gi|189375751|gb|EDU94167.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|194411527|gb|EDX27865.1| integrase for prophage CP-933T [Escherichia coli B171] gi|195182940|dbj|BAG66506.1| putative integrase [Escherichia coli O111:H-] gi|208724861|gb|EDZ74568.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4206] gi|208731139|gb|EDZ79828.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4045] gi|208739644|gb|EDZ87326.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC4042] gi|209157101|gb|ACI34534.1| integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|217318232|gb|EEC26659.1| integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254592932|gb|ACT72293.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. TW14359] gi|309702157|emb|CBJ01472.1| phage integrase [Escherichia coli ETEC H10407] gi|323180706|gb|EFZ66251.1| integrase [Escherichia coli 1180] gi|326342290|gb|EGD66071.1| Integrase [Escherichia coli O157:H7 str. 1044] gi|326343839|gb|EGD67601.1| Integrase [Escherichia coli O157:H7 str. 1125] gi|331079630|gb|EGI50827.1| integrase [Escherichia coli H299] Length = 333 Score = 79.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 277 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 325 >gi|218690783|ref|YP_002398995.1| Integrase [Escherichia coli ED1a] gi|218428347|emb|CAR09275.2| Integrase [Escherichia coli ED1a] Length = 338 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T +Y + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFAPDHLEDAVTK 331 >gi|255690724|ref|ZP_05414399.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] gi|260623761|gb|EEX46632.1| glutamine amidotransferase, class I [Bacteroides finegoldii DSM 17565] Length = 343 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 36/53 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ ATHLL++G D+ +++ +GHS + TT IY ++ +R +E+ + Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEVLKKC 318 >gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] Length = 388 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H+ RH+FA +L G ++ ++Q +LGH LSTTQIY + K+ E Sbjct: 324 ITFHSGRHTFAVLMLDLGAEIYTVQKLLGHKELSTTQIYAKILDKKKQEAV 374 >gi|168262786|ref|ZP_02684759.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348507|gb|EDZ35138.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 345 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E + +P +K Sbjct: 284 HVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFAPNHLEEAL-KLNPLKCRKS 341 >gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 329 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R+++ ILGHS +STTQIYT+++ + ++ Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIYTHLDDDDLKNAVNK 321 >gi|299531115|ref|ZP_07044528.1| phage integrase family protein [Comamonas testosteroni S44] gi|298721072|gb|EFI62016.1| phage integrase family protein [Comamonas testosteroni S44] Length = 313 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRH+FA+HL L +IQ +LGH R TT Y ++ + + + DQ HP Sbjct: 245 LRLTPHALRHAFASHLYQGKATLHTIQLLLGHERQETTAHYVSILHEDIRAMADQHHPRS 304 Query: 61 TQKDK 65 ++ ++ Sbjct: 305 SKYER 309 >gi|227461198|gb|ACP39544.1| putative integron integrase [uncultured microorganism] Length = 299 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 26/42 (61%), Positives = 33/42 (78%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + TLRHSFATHLL+ G D+R+IQ +LGH L TT+IYT+V Sbjct: 258 ASVRTLRHSFATHLLATGTDIRTIQLLLGHRNLKTTRIYTHV 299 >gi|298388238|ref|ZP_06997757.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259004|gb|EFI01909.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 160 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 99 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 146 >gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21] gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21] Length = 360 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS+ATHLL G D+ IQ +LGH+ + TT +Y V + ++ I Sbjct: 306 HGLRHSYATHLLEYGTDMLFIQQLLGHNDIKTTMLYAKVGNAQLNAI 352 >gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] Length = 322 Score = 79.5 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 391 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 S T HT RH+FAT LL+ G DL ++ +LGHS++ TQIY + ++R E + Sbjct: 332 SVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRKDEAVN 384 >gi|227114983|ref|ZP_03828639.1| phage integrase family protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 328 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + + + Sbjct: 274 HVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFSPNHLEDALR 322 >gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1] gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1] gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] Length = 322 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|163736010|ref|ZP_02143436.1| tyrosine recombinase [Roseobacter litoralis Och 149] gi|161390735|gb|EDQ15078.1| tyrosine recombinase [Roseobacter litoralis Och 149] Length = 153 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS AT L+ G D+R +Q++LGH+ L TT+IY V++ + ++ Sbjct: 93 TPHRFRHSAATLLIEEGIDIRIVQALLGHANLKTTKIYVRVSNHALRRALER 144 >gi|332981969|ref|YP_004463410.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332699647|gb|AEE96588.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 322 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+ AT + G D+R++Q +LGH +STTQIYT+V++ + + Sbjct: 259 STHKLRHTAATLMYKYGDIDIRTLQQLLGHENISTTQIYTHVDNDMVRHAVN 310 >gi|323946286|gb|EGB42318.1| phage integrase [Escherichia coli H120] Length = 335 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH + T IY + + + + Sbjct: 271 HVLRHTFASHFMMNGGNILVLRDILGHVDIKMTMIYAHFAPDHLEDAVTK 320 >gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] Length = 376 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 369 >gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12] gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12] gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 376 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 369 >gi|187921294|ref|YP_001890326.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187923078|ref|YP_001894720.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187714272|gb|ACD15496.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187719732|gb|ACD20955.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 291 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH++L T +Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281 >gi|32472856|ref|NP_865850.1| integrase [Rhodopirellula baltica SH 1] gi|32444093|emb|CAD73535.1| integrase [Rhodopirellula baltica SH 1] Length = 436 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 29/45 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHS+ATHLL G L+ IQ LGHS L TT +Y ++ Sbjct: 370 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 414 >gi|115345577|ref|YP_771759.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] gi|115292898|gb|ABI93351.1| tyrosine recombinase [Roseobacter denitrificans OCh 114] Length = 302 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHS AT L+ G D+R +Q++LGH+ L TT+IY V++ + ++ Sbjct: 242 TPHRFRHSAATLLIEEGTDIRMVQALLGHASLRTTEIYVRVSNHALRRALERA 294 >gi|226363472|ref|YP_002781254.1| tyrosine recombinase [Rhodococcus opacus B4] gi|226241961|dbj|BAH52309.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 272 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH FAT N ++R++Q +LGH ++TTQ+YT V+ + + Sbjct: 219 TMHKLRHRFATRAYRNTRNIRAVQQLLGHESVATTQVYTAVDDDELRAAMNAA 271 >gi|323709096|gb|ADY02569.1| IntI1 integron integrase [Aeromonas media] Length = 310 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/38 (60%), Positives = 29/38 (76%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ 39 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTM 310 >gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 304 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA L GGDL S+Q I+GHS LSTT+ Y ++ ++ + + + Q P Sbjct: 246 SPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVHLLTEDIQKKHRQFSP 300 >gi|284008591|emb|CBA75173.1| phage integrase [Arsenophonus nasoniae] Length = 300 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E + +P + K Sbjct: 240 HVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYAHFAPDHLDEAV-RLNPLALSESK 298 >gi|258648850|ref|ZP_05736319.1| phage-related integrase [Prevotella tannerae ATCC 51259] gi|260850864|gb|EEX70733.1| phage-related integrase [Prevotella tannerae ATCC 51259] Length = 341 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH---- 57 + H+LRHS A HLL G +L I+ ILGH + TT+IY +SK+ E + + Sbjct: 257 KVSPHSLRHSKAMHLLQAGVNLVYIRDILGHVSIQTTEIYARADSKQKREALEAAYIDVI 316 Query: 58 PSITQK 63 P++ +K Sbjct: 317 PTMDKK 322 >gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 359 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E + Sbjct: 302 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 352 >gi|222034355|emb|CAP77096.1| Phage integrase [Escherichia coli LF82] gi|312601703|gb|ADQ92377.1| integrase [Salmonella phage RE-2010] Length = 338 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T +Y + + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHSDIKMTMVYAHFAPEHLEDAVTK 331 >gi|146313149|ref|YP_001178223.1| phage integrase family protein [Enterobacter sp. 638] gi|145320025|gb|ABP62172.1| phage integrase family protein [Enterobacter sp. 638] Length = 336 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + + + +P T K++ Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAV-KLNPLSTHKEQ 335 Query: 66 K 66 + Sbjct: 336 Q 336 >gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 280 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 34/47 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRHSFA+HL +G D++ IQ++LGH +T+IY +V++K + Sbjct: 221 VSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHVSNKTL 267 >gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402] gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 339 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+ + L NGG++R +Q ILGH +L+TT+IY +V+ M Sbjct: 263 NITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAHVSEDLM 310 >gi|557887|gb|AAA50502.1| integrase [Bergeyella zoohelcum] gi|1098132|prf||2115270D integrase Length = 259 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 31/45 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHSFATHLL +G D+ SI+++LGH + TT IY + Sbjct: 195 EVSVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQIAQ 239 >gi|308188180|ref|YP_003932311.1| Integrase [Pantoea vagans C9-1] gi|308058690|gb|ADO10862.1| Integrase [Pantoea vagans C9-1] Length = 337 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + E + Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLFEAIN 330 >gi|261248380|emb|CBG26217.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 340 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + + + +P T DK Sbjct: 279 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAV-KLNPLATSGDK 337 >gi|303326864|ref|ZP_07357306.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302862852|gb|EFL85784.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 448 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 34/50 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + HTLRH++AT +L G D+ +++ ++GH+ ++TT+IY ++ + E Sbjct: 386 TVVWHTLRHTYATKMLEAGTDIYTLKELMGHASVTTTEIYLHLCDRAKRE 435 >gi|300872275|gb|ADK38965.1| IntI4 [Vibrio sp. V37(2010)] Length = 293 Score = 79.2 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 30/43 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HTLRHSFATH L G D+R+ +LGH+ + T Q YT+V Sbjct: 240 TVTCHTLRHSFATHSLEVGADIRTGHELLGHTDVKTEQNYTHV 282 >gi|149200178|ref|ZP_01877201.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149136715|gb|EDM25145.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 328 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS+ATH++ G + +IQ ILGH + TT IY + IY+ H I + Sbjct: 229 VSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYARLTEL----IYENRHDQIRK 284 >gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 339 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 34/51 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++H LRH+FA+H + NGG++ ++Q ILGH+ L+ T Y ++ + ++ Sbjct: 271 SSHVLRHTFASHFVMNGGNILTLQKILGHTTLAMTMRYAHLAPDHLQDVVR 321 >gi|32267344|ref|NP_861376.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449] gi|32263397|gb|AAP78442.1| integrase/recombinase XerD [Helicobacter hepaticus ATCC 51449] Length = 362 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 33/49 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRHSFAT L DL +Q LGHS L+T++IYT+ + +R+ E+ Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHSDLNTSRIYTHFDMERLQEVV 349 >gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239] gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 400 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L NG +++Q+ILGHS +STT IYT+V + D+ Sbjct: 341 FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDK 392 >gi|257066445|ref|YP_003152701.1| site-specific tyrosine recombinase XerC [Anaerococcus prevotii DSM 20548] gi|256798325|gb|ACV28980.1| integrase family protein [Anaerococcus prevotii DSM 20548] Length = 329 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R+++ ILGH +STTQIYT+++ + + ++ Sbjct: 269 STHKLRHTAATLMYKYGNVDIRALKDILGHVNISTTQIYTHLDDEDLKNAVNK 321 >gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] Length = 348 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRH+FAT NG + +Q ++GH+ ++TT+ Y ++ + E + + P Sbjct: 279 NVSPHVLRHNFATMAAENGMSVFHLQKLMGHADIATTRKYVQISEGSLAEEHKRFSPLTR 338 Query: 62 QKDKK 66 +K Sbjct: 339 LTSRK 343 >gi|224025068|ref|ZP_03643434.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM 18228] gi|298377207|ref|ZP_06987161.1| integrase [Bacteroides sp. 3_1_19] gi|224018304|gb|EEF76302.1| hypothetical protein BACCOPRO_01802 [Bacteroides coprophilus DSM 18228] gi|298266191|gb|EFI07850.1| integrase [Bacteroides sp. 3_1_19] Length = 340 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHS A H+L G +L I+ LGH+ +TT+IY + K + ++ P I Sbjct: 256 NISCHTFRHSKAMHMLEAGINLVYIRDFLGHASTTTTEIYARASEKLKEQALEKLAPGII 315 Query: 62 QKDK 65 Q+ K Sbjct: 316 QESK 319 >gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 353 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + + Sbjct: 281 STHVLRHTFASHFMMNGGNILVLQRILGHTDIKMTMRYSHFAPDHLEDAVR 331 >gi|83814492|ref|YP_444224.1| integrase/recombinase [Salinibacter ruber DSM 13855] gi|83755886|gb|ABC43999.1| integrase/recombinase [Salinibacter ruber DSM 13855] Length = 451 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFATH L +G D+R+IQ +L H +L TT Y +V Sbjct: 390 ATCHTLRHSFATHRLQDGTDVRTIQKLLAHEQLRTTMQYVHV 431 >gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+FAT L+ G D+R IQ+ LGH+ +T+ Y V + M ++ D Sbjct: 214 VPIHPHKLRHTFATVLVDRGVDIRVIQAFLGHASPNTSARYAKVRDELMFKVVD 267 >gi|89147630|gb|ABD62674.1| integrase [uncultured bacterium] Length = 163 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FA HLL +G D+R++Q +LGH ++TT IYT+V Sbjct: 123 CHTLRHGFAPHLLEDGYDMRTVQELLGHKDVTTTMIYTHV 162 >gi|302539285|ref|ZP_07291627.1| integrase [Streptomyces sp. C] gi|302448180|gb|EFL19996.1| integrase [Streptomyces sp. C] Length = 356 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L NG D+ +IQ ILGH L+TT IY +V + + + + T + Sbjct: 292 TPHVLRHFAASDLYRNGMDVVAIQEILGHEWLNTTMIYVHVEKSHVEDAWIRAGQRATTR 351 >gi|15595925|ref|NP_249419.1| bacteriophage integrase [Pseudomonas aeruginosa PAO1] gi|9946613|gb|AAG04117.1|AE004508_2 probable bacteriophage integrase [Pseudomonas aeruginosa PAO1] Length = 327 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + NGG + ++Q ILGH+ LS T Y +++ + E + +P I Sbjct: 273 HVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSEAV-RFNPLI 326 >gi|308184464|ref|YP_003928597.1| integrase-recombinase protein [Helicobacter pylori SJM180] gi|308060384|gb|ADO02280.1| integrase-recombinase protein [Helicobacter pylori SJM180] Length = 356 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 349 >gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 78.8 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+ AT L +G D+ +IQ +LGH+ STTQIY + + Y Q Sbjct: 275 PVFPHLLRHTMATLGLQSGADITTIQHLLGHTTPSTTQIYAENSLDNLKHEYKQH 329 >gi|315637161|ref|ZP_07892383.1| phage integrase family site-specific recombinase [Arcobacter butzleri JV22] gi|315478528|gb|EFU69239.1| phage integrase family site-specific recombinase [Arcobacter butzleri JV22] Length = 350 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ ++T++IYT+ + +R+ + Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERLKK 345 >gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969] gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969] Length = 400 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L NG +++Q+ILGHS +STT IYT+V + D+ Sbjct: 341 FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDK 392 >gi|94442288|dbj|BAE93643.1| integron integrase [uncultured bacterium] Length = 162 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 +H RH FATHLL NG D+R+IQ +LGH ++TT IYT+V Sbjct: 120 VGSHAFRHCFATHLLQNGHDIRTIQELLGHKHVTTTMIYTHV 161 >gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 348 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 29/45 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHS+ATHLL G L+ IQ LGHS L TT +Y ++ Sbjct: 282 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326 >gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 322 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|157737437|ref|YP_001490120.1| integrase/recombinase XerD [Arcobacter butzleri RM4018] gi|157699291|gb|ABV67451.1| integrase/recombinase XerD [Arcobacter butzleri RM4018] Length = 350 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 32/47 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 AH LRHSFAT L DL +Q LGH+ ++T++IYT+ + +R+ + Sbjct: 299 AHMLRHSFATLLYQKHHDLILVQEALGHADINTSRIYTHFDKERLKK 345 >gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 381 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL + +LGH+ + TTQIY + + +E + Sbjct: 322 KITYHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKIVDSKKVEAVN 374 >gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 376 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +++ E + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKKDEAVN 369 >gi|168187849|ref|ZP_02622484.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169294306|gb|EDS76439.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 397 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H+LRH++AT L G ++++Q+++GHS ++TT IYT+V + + ++ Sbjct: 334 FHSLRHTYATRLFEVGVPIKTVQTLMGHSDITTTMNIYTHVMPEEKNKAAEK 385 >gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1] gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 29/45 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHS+ATHLL G L+ IQ LGHS L TT +Y ++ Sbjct: 282 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326 >gi|158314469|ref|YP_001506977.1| integrase family protein [Frankia sp. EAN1pec] gi|158109874|gb|ABW12071.1| integrase family protein [Frankia sp. EAN1pec] Length = 377 Score = 78.8 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 30/53 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS+ THL+ +G D + +Q +GH ST IYT+V+ M + Sbjct: 313 TPHCLRHSYVTHLIEDGADPKFVQEQVGHRYASTLGIYTHVSEGFMNAMMRTA 365 >gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7] gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7] Length = 335 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 1 MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRH+ AT + G D ++ ILGH L+TT+IYT+++++ + + + +P Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQA-AEANPL 319 Query: 60 ITQKDKKN 67 QK K+ Sbjct: 320 SGQKANKS 327 >gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 380 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H+LRH+ AT LL G +++ IQ LGHS LSTT IY++V +K + + Sbjct: 317 FHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTNKMKNDTVN 367 >gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T + LRH+FA L GGD S+Q ILGH+ L+ T+ Y ++ + EI+++ P Sbjct: 240 VKVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEIHEKASPIQ 299 Query: 61 T 61 Sbjct: 300 K 300 >gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] Length = 295 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + + + Sbjct: 227 PISPHSLRHGFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 277 >gi|312128949|ref|YP_003996289.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311905495|gb|ADQ15936.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 421 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT L+ G L S+ ++GH +STTQIY + S+++ + D Sbjct: 347 KVTFHTARHTFATMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMD 399 >gi|225374497|ref|ZP_03751718.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM 16841] gi|225213735|gb|EEG96089.1| hypothetical protein ROSEINA2194_00112 [Roseburia inulinivorans DSM 16841] Length = 106 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 34/47 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K + Sbjct: 47 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTL 93 >gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16] Length = 301 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ ++ + + Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298 >gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] Length = 372 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA HLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 311 PHLLRHSFAPHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 358 >gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815] gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815] gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815] gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815] gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815] gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRH+FATHLL G D+R IQ ++GH L+TT Y + + Sbjct: 219 PITPHSLRHAFATHLLEAGTDVRRIQLLMGHRSLATTSRYLRIATS 264 >gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89] gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89] gi|332342335|gb|AEE55669.1| phage integrase [Escherichia coli UMNK88] Length = 330 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + + + + +P Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAIN-FNPLA 321 >gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269] gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269] Length = 418 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|313105646|ref|ZP_07791910.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] gi|310878412|gb|EFQ37006.1| putative bacteriophage integrase [Pseudomonas aeruginosa 39016] Length = 328 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGHS L+ T Y + + + + Sbjct: 273 HALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAHPSPDHLQDAVK 321 >gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 418 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302] gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302] Length = 418 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 418 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|193214734|ref|YP_001995933.1| integron integrase [Chloroherpeton thalassium ATCC 35110] gi|193088211|gb|ACF13486.1| integron integrase [Chloroherpeton thalassium ATCC 35110] Length = 355 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 21/35 (60%), Positives = 26/35 (74%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37 T HT RHSFATHLL +G D+R+IQ +LGH + T Sbjct: 282 ATCHTFRHSFATHLLESGYDIRTIQELLGHKNVET 316 >gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70] gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70] Length = 301 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ ++ + + Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298 >gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2] Length = 301 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ ++ + + Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298 >gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1] gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 29/45 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHS+ATHLL G L+ IQ LGHS L TT +Y ++ Sbjct: 282 KVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326 >gi|322831291|ref|YP_004211318.1| integrase family protein [Rahnella sp. Y9602] gi|321166492|gb|ADW72191.1| integrase family protein [Rahnella sp. Y9602] Length = 332 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI--YDQTH 57 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + + + Y+ H Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPEHLEDAVKYNPLH 330 >gi|49087894|gb|AAT51509.1| PA0728 [synthetic construct] Length = 328 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + NGG + ++Q ILGH+ LS T Y +++ + E + +P I Sbjct: 273 HVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSQDHLSEAV-RFNPLI 326 >gi|237717516|ref|ZP_04547997.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453185|gb|EEO58976.1| phage integrase [Bacteroides sp. 2_2_4] Length = 343 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 35/53 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ ATHLL++G D+ +++ +GHS + TT IY ++ +R +E + Sbjct: 266 SPHVIRHTTATHLLNSGADIDMVRNWMGHSSIDTTNIYAEISMERKLEALKKC 318 >gi|187734150|ref|YP_001880474.1| integrase [Shigella boydii CDC 3083-94] gi|187431142|gb|ACD10416.1| integrase [Shigella boydii CDC 3083-94] Length = 375 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + Sbjct: 320 HALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDAVR 368 >gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 351 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGH+ + T Y++ + + E D Sbjct: 282 HVLRHTFASHFMMAGGNILVLQRILGHTDIKMTMRYSHFSPNHLNEAID 330 >gi|17158102|ref|NP_478098.1| IntIdelta1 protein [Corynebacterium glutamicum] gi|17059621|emb|CAD12229.1| IntIdelta1 protein [Corynebacterium glutamicum] Length = 387 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/37 (62%), Positives = 29/37 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309 >gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735] gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735] Length = 418 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium bavaricum] Length = 324 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 34/50 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+ L+ G DLR+IQ +LGH+ STT IY +++ ++ + D Sbjct: 272 HDLRHTFASLLVQAGIDLRTIQVLLGHTSYSTTLIYAHLSQNQLQDAIDH 321 >gi|238762053|ref|ZP_04623026.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238699781|gb|EEP92525.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 349 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA H + +GG++ +Q ILGHS + T Y + + + E Q +P T K Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL-ETAVQFNPLTTMK 337 >gi|329964322|ref|ZP_08301403.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328525371|gb|EGF52419.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 412 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHSF+T + L NG + ++ +LGH+ + TTQ+Y V K++ E D+ Sbjct: 348 SYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDKY 401 >gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046] Length = 280 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K + Y + Sbjct: 226 IHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKIRQDYYSKY 279 >gi|327440384|dbj|BAK16749.1| integrase [Solibacillus silvestris StLB046] Length = 157 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS+ATH+++NG + IQS+LGH + TT+IY ++ K + Y + Sbjct: 103 IHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSGKLRQDYYSKY 156 >gi|29348044|ref|NP_811547.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|29339946|gb|AAO77741.1| putative integrase/recombinase [Bacteroides thetaiotaomicron VPI-5482] Length = 330 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + HTLRH+ A HL +G D+ +IQS LGH L+TT IYT V+ + + Sbjct: 267 VSPHTLRHTAACHLYESGNDIVTIQSWLGHVSLNTTNIYTEVSLQMKEKAIM 318 >gi|323146177|gb|ADX32415.1| phage integrase family protein [Cronobacter phage ENT90] Length = 345 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG+L +Q +LGH+ + T Y + + E + +P D+ Sbjct: 277 HVLRHTFASHFMMNGGNLLVLQRVLGHTDIKMTMRYAHFAPDHLEEA-AKLNPLAQSGDE 335 >gi|54308887|ref|YP_129907.1| integrase-recombinase [Photobacterium profundum SS9] gi|46913317|emb|CAG20105.1| hypothetical integrase-recombinase [Photobacterium profundum SS9] Length = 180 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRH FATHLL G DLRS+Q +LGH+ L+TT YT + + + Sbjct: 112 PISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRMTQIKQRDA 162 >gi|152988581|ref|YP_001350694.1| integrase [Pseudomonas aeruginosa PA7] gi|150963739|gb|ABR85764.1| integrase [Pseudomonas aeruginosa PA7] Length = 332 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILALQRILGHSSITMTMRYAHLSPEHLESAMR 317 >gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 322 Score = 78.4 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 35/52 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATSFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 392 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H LRH+FAT LL + + +Q +LGHS +STT IY++V + ++ Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHVLFDTKQKAIEE 381 >gi|149196595|ref|ZP_01873649.1| phage integrase [Lentisphaera araneosa HTCC2155] gi|149140275|gb|EDM28674.1| phage integrase [Lentisphaera araneosa HTCC2155] Length = 298 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 4/48 (8%) Query: 3 TTAHTLRHSFATHLLSNGG----DLRSIQSILGHSRLSTTQIYTNVNS 46 + H+LRHS+ATHL+ G +LR IQ ILGHS +TT IY++++ Sbjct: 230 VSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPATTAIYSHLSK 277 >gi|317009310|gb|ADU79890.1| XerCD family integrase/recombinase [Helicobacter pylori India7] Length = 355 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 348 >gi|152973358|ref|YP_001337138.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958207|gb|ABR80237.1| putative prophage gp Int for integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 335 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + ++ Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDVLR 325 >gi|16763108|ref|NP_458725.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144590|ref|NP_807932.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414704|ref|YP_151779.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363631|ref|YP_002143268.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213426678|ref|ZP_03359428.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586423|ref|ZP_03368249.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213855469|ref|ZP_03383709.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25301805|pir||AI1039 phage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505416|emb|CAD06766.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140228|gb|AAO71792.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128961|gb|AAV78467.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095108|emb|CAR60654.1| phage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 341 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 331 >gi|239949848|gb|ACS36646.1| phage-like integrase [Pseudomonas aeruginosa PAO1] Length = 333 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316 >gi|16766051|ref|NP_461666.1| phage tail-like protein [Enterobacteria phage Fels-2] gi|169936064|ref|YP_001718763.1| P2 Int-like protein [Enterobacteria phage Fels-2] gi|197250527|ref|YP_002147666.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200388896|ref|ZP_03215508.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|16421285|gb|AAL21625.1| Fels-2 prophage protein [Enterobacteria phage Fels-2] gi|197214230|gb|ACH51627.1| phage integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199605994|gb|EDZ04539.1| phage integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|312913759|dbj|BAJ37733.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223527|gb|EFX48592.1| Phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 341 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 331 >gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 383 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 35/51 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH++AT LL+ G DL ++ +LGH+ ++TTQIY V K+ ++ + Sbjct: 325 TFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVDAVN 375 >gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 410 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H RH+FAT L+NG D+ ++ +LGH+ + TTQ Y V K ++ Sbjct: 352 NITFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQAYAKVIDKNKIKA 402 >gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHL+ G + +IQ++LGH +T++Y +V++K +M I Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275 >gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 301 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 32/51 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S HTLRH FATHLL NG +L IQ +LGHS T IY ++ ++++ Sbjct: 231 SVHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAA 281 >gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 322 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|198243118|ref|YP_002216741.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937634|gb|ACH74967.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624498|gb|EGE30843.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 341 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 331 >gi|146300455|ref|YP_001195046.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154873|gb|ABQ05727.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 386 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RH++AT +++G D+ ++ ++GH + TTQIYT + ++ E Sbjct: 330 ITFHCFRHTYATLQIASGTDIFTVSKMMGHKSIKTTQIYTKIIDEKKREA 379 >gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 354 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 32/49 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+ AT LL +G DL ++Q +LGH+++STT YT V ++ E D Sbjct: 296 HLARHTHATLLLESGADLYTVQKLLGHTKISTTAQYTQVTDRKKKEAID 344 >gi|325997549|gb|ADZ49757.1| XERCD family protein/integrase/recombinase [Helicobacter pylori 2017] Length = 363 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 356 >gi|307637362|gb|ADN79812.1| integrase/recombinase [Helicobacter pylori 908] gi|325995955|gb|ADZ51360.1| integrase/recombinase [Helicobacter pylori 2018] Length = 363 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 356 >gi|262042628|ref|ZP_06015784.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040062|gb|EEW41177.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 276 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGH+ + T Y + + E Sbjct: 197 HVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTEAVQ 245 >gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 322 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH+FAT+ L NGG + ++ I+GH+ ++TT Y +N + + E Y++ Sbjct: 262 SPHSLRHTFATNFLRNGGSVNALMRIMGHADITTTMRYVRLNDEAVKEQYEK 313 >gi|163801756|ref|ZP_02195654.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4] gi|159174673|gb|EDP59475.1| guanosine 5'-monophosphate oxidoreductase [Vibrio sp. AND4] Length = 343 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+H + NGG++ ++ ILGH+ +S T Y + + E Sbjct: 288 HVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSEAISH 337 >gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii] Length = 418 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|222823741|ref|YP_002575315.1| integrase/recombinase [Campylobacter lari RM2100] gi|222538963|gb|ACM64064.1| integrase/recombinase [Campylobacter lari RM2100] Length = 355 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 3/56 (5%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM---EIYDQTH 57 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +++++ E+ + H Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKLAAEVAKKLH 352 >gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574] gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574] Length = 418 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RH+FAT L+NG D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 SFHCFRHTFATLQLANGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKNKA 405 >gi|218130593|ref|ZP_03459397.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697] gi|217986937|gb|EEC53268.1| hypothetical protein BACEGG_02182 [Bacteroides eggerthii DSM 20697] Length = 409 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHSF+T + L NG + ++ +LGH+ + TTQ+Y V K++ E D+ Sbjct: 345 SYHMGRHSFSTLMTLENGVPIETVSKMLGHADIRTTQVYARVTPKKLFEDMDKY 398 >gi|212696176|ref|ZP_03304304.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] gi|212676805|gb|EEB36412.1| hypothetical protein ANHYDRO_00712 [Anaerococcus hydrogenalis DSM 7454] Length = 330 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R+++ +LGH +STTQIYT+++++ + ++ Sbjct: 270 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDNEDLKRAVNK 322 >gi|186896896|ref|YP_001874008.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699922|gb|ACC90551.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 351 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRH+FA+H + GG++ +Q ILGH+ + T Y++ + + E + +P Sbjct: 285 HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYSHFSPDHLDEAL-RFNPLA 338 >gi|298206478|ref|YP_003717580.1| resolvase/integrase [Escherichia coli ETEC 1392/75] gi|297374350|emb|CBL93324.1| resolvase/integrase [Escherichia coli ETEC 1392/75] Length = 268 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|304396875|ref|ZP_07378755.1| integrase family protein [Pantoea sp. aB] gi|304355671|gb|EFM20038.1| integrase family protein [Pantoea sp. aB] Length = 338 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +Q ILGH+ + T Y++ + E Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYSHFAPDHLSEAM 329 >gi|107100187|ref|ZP_01364105.1| hypothetical protein PaerPA_01001210 [Pseudomonas aeruginosa PACS2] Length = 328 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG + ++Q ILGH+ LS T Y +++ + E Sbjct: 273 HVLRHTFASHFIMNGGHIVTLQHILGHASLSMTMRYAHLSHDHLSEALR 321 >gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12] gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12] Length = 376 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369 >gi|332884956|gb|EGK05210.1| hypothetical protein HMPREF9456_02974 [Dysgonomonas mossii DSM 22836] Length = 342 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+ A HLL G L I+ ILGHS + TT+IY +SK+ E ++ + ++ Sbjct: 261 ISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSP 320 Query: 63 K 63 Sbjct: 321 N 321 >gi|238784932|ref|ZP_04628931.1| Integrase [Yersinia bercovieri ATCC 43970] gi|238714147|gb|EEQ06160.1| Integrase [Yersinia bercovieri ATCC 43970] Length = 342 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ +Q ILGHS + T Y + + + E Q +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL-ETAVQFNPLAT 335 >gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 376 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369 >gi|157149395|ref|YP_001451419.1| resolvase [Escherichia coli E24377A] gi|157076562|gb|ABV16275.1| resolvase [Escherichia coli E24377A] Length = 268 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|182420569|ref|ZP_02643964.2| phage integrase [Clostridium perfringens NCTC 8239] gi|182379659|gb|EDT77138.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 202 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L NG +++Q+ILGHS +STT IYT+V + D+ Sbjct: 143 FHDLRHTFATRLFENGVPPKTVQTILGHSDISTTLNIYTHVMKDTKDKAIDK 194 >gi|225377377|ref|ZP_03754598.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM 16841] gi|225210778|gb|EEG93132.1| hypothetical protein ROSEINA2194_03025 [Roseburia inulinivorans DSM 16841] Length = 340 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHS A HLL +L I+ +LGHS ++TT+IY ++ E ++ +P Sbjct: 259 KLSPHCIRHSKAMHLLQANVNLVYIRDLLGHSSVTTTEIYARADTTLKREALEKANP 315 >gi|313144154|ref|ZP_07806347.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] gi|313129185|gb|EFR46802.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 354 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 34/49 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ +SKR+ E+ Sbjct: 262 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREVV 310 >gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum A str. ATCC 19397] gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 331 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFATH L++G L IQ ++GH STTQ+Y ++ + +M Y + Sbjct: 276 SIYPHLFRHSFATHKLNSGMPLPVIQHLMGHENPSTTQVYAELSEENVMHEYKK 329 >gi|54027895|ref|YP_122135.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019403|dbj|BAD60771.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 358 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L G D+ +IQ +LGHS ++TT Y + R+ + H + Sbjct: 293 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGHKRAAAR 352 >gi|50955878|ref|YP_063166.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952360|gb|AAT90061.1| phage-related integrase/recombinase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 256 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS+ATHL+ +G D +Q LGH STT IYT+V+ + Sbjct: 190 TPHCLRHSYATHLIEDGHDPVFVQRQLGHVYQSTTSIYTHVSEDFANRLLQAA 242 >gi|254779339|ref|YP_003057444.1| putative integrase/recombinase [Helicobacter pylori B38] gi|254001250|emb|CAX29225.1| Putative integrase/recombinase [Helicobacter pylori B38] Length = 356 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 349 >gi|189346557|ref|YP_001943086.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245] gi|189340704|gb|ACD90107.1| integrase/recombinase-related protein [Chlorobium limicola DSM 245] Length = 64 Score = 78.0 bits (192), Expect = 4e-13, Method: Composition-based stats. Identities = 27/51 (52%), Positives = 35/51 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRHS+ATHLL G DLR IQ +LGH TT+IYT+V + +++I Sbjct: 7 PATLHGLRHSYATHLLEVGTDLRYIQELLGHKSSKTTEIYTHVCEQSLLKI 57 >gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 78.0 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGH+ + T Y + + E Sbjct: 282 HVLRHTFASHFMMGGGNILVLQRILGHTDIKVTMRYAHFAPDHLTEAVQ 330 >gi|208434593|ref|YP_002266259.1| integrase-recombinase protein [Helicobacter pylori G27] gi|208432522|gb|ACI27393.1| integrase-recombinase protein [Helicobacter pylori G27] Length = 363 Score = 78.0 bits (192), Expect = 5e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 356 >gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] Length = 296 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/45 (55%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+Q +LGH+ L+TT YT++ Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNTTAKYTHLTD 271 >gi|330503525|ref|YP_004380394.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328917811|gb|AEB58642.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 329 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + GG++ ++Q ILGH+ L+ T Y +++ + + Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSPDHLQDAL 320 >gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 367 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 310 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 360 >gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] Length = 376 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369 >gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 371 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H++RHS+AT L ++++Q +LGH ++TT IYT+V ++ +E+ D+ Sbjct: 315 SFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKLEVLDK 367 >gi|224437705|ref|ZP_03658652.1| integrase/recombinase XerD [Helicobacter cinaedi CCUG 18818] Length = 393 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 34/49 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ +SKR+ E+ Sbjct: 301 AHMLRHSFATLLYQQKHDLVMVQEALGHADLNTSRIYTHFDSKRLREVV 349 >gi|25986886|gb|AAN16071.1| site-specific recombinase [Pseudomonas stutzeri] Length = 299 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/36 (61%), Positives = 27/36 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37 T HTLRHSFATHLL +G D+R+ Q +LGHS + T Sbjct: 264 PATPHTLRHSFATHLLESGQDIRTDQELLGHSDVKT 299 >gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8] gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8] gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] Length = 253 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RHSFA L+ G L IQ++LGH+ +STT IY + S+ Sbjct: 200 KVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245 >gi|54027743|ref|YP_121984.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019251|dbj|BAD60620.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 353 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L G D+ +IQ +LGHS ++TT Y + R+ + H + Sbjct: 288 TPHVLRHYCASQLYRTGVDILAIQELLGHSWITTTMRYVHPYGTRVEDAVTAGHKRAAAR 347 >gi|332661864|ref|YP_004451334.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332337361|gb|AEE54461.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 524 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT ++ G D+R Q +LGH+ TT+IY +V + + + Sbjct: 154 VHPHMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQAIR 205 >gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 392 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 ++ H LRH+FAT LL + + +Q +LGHS +STT IY++V + Sbjct: 326 LNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSHVLFDTKQKAI 379 >gi|15611684|ref|NP_223335.1| integrase-recombinase protein (XERCD family) [Helicobacter pylori J99] gi|4155169|gb|AAD06197.1| INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY) [Helicobacter pylori J99] Length = 356 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKEA 349 >gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 376 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369 >gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT L +G +LR IQ +LGH+ TT Y VN K+++E + Sbjct: 232 HPHKLRHTAATLALQSGAELRVIQELLGHASPLTTARYAKVNQKQLIEATKK 283 >gi|27367129|ref|NP_762656.1| integrase [Vibrio vulnificus CMCP6] gi|27358697|gb|AAO07646.1|AE016810_149 Integrase [Vibrio vulnificus CMCP6] Length = 343 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+H + NGG++ ++ ILGH+ +S T Y + + E + Sbjct: 288 HVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSEAITR 337 >gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 301 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 4 TAHTLRHSFATHLLSNG---GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FAT L+ DLR++Q +LGH L TTQ+YT+V+ ++ + + Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIETF 298 >gi|317014094|gb|ADU81530.1| phage integrase family site specific recombinase [Helicobacter pylori Gambia94/24] Length = 356 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKDRLKEA 349 >gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74] gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74] Length = 378 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT L G DL +I +LGH ++TTQIY + + ++ Sbjct: 317 ITFHAFRHTFATLQLMEGTDLYTISKLLGHRNITTTQIYAKIVDTQKRAAVNR 369 >gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] Length = 280 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S H LRHS+ATH+++NG L IQS+LGH + TT+IY ++ K + Y + Sbjct: 225 SIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSGKLRHDFYIKY 279 >gi|251764782|sp|Q38067|INTG_BPPF1 RecName: Full=Putative integrase gi|187940170|gb|ACD39300.1| phage integrase family protein [Pseudomonas aeruginosa] Length = 333 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316 >gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68] Length = 330 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + + + + +P Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAIN-FNPLA 321 >gi|293416320|ref|ZP_06658959.1| resolvase [Escherichia coli B185] gi|291431676|gb|EFF04659.1| resolvase [Escherichia coli B185] Length = 268 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|260769653|ref|ZP_05878586.1| integrase [Vibrio furnissii CIP 102972] gi|260614991|gb|EEX40177.1| integrase [Vibrio furnissii CIP 102972] Length = 347 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 27/47 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RH+FA+ + GG++ +Q ILGHS + T Y + + +++ Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYAHFSPDHLIQA 336 >gi|323159070|gb|EFZ45070.1| resolvase [Escherichia coli E128010] Length = 212 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 141 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 184 >gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14] gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14] Length = 405 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FA +L+ G D+ ++ +LGH ++TTQIY V ++ Sbjct: 330 ITYHCSRHTFAVLMLNFGADIYTVSKMLGHREIATTQIYARVLDEKKRAAIM 381 >gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 443 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH+FAT L NG + +Q ILGHS ++ T +YT+V + + + Sbjct: 386 TPHALRHTFATRALENGIPPKVVQEILGHSSITMTLDLYTHVLPQTKAQEMKK 438 >gi|322833261|ref|YP_004213288.1| integrase family protein [Rahnella sp. Y9602] gi|321168462|gb|ADW74161.1| integrase family protein [Rahnella sp. Y9602] Length = 351 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FA H + +GG++ +Q ILGHS + T Y + + + E +P T K Sbjct: 281 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL-ETALHFNPLATMK 337 >gi|294783281|ref|ZP_06748605.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] gi|294480159|gb|EFG27936.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] Length = 346 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 29/54 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H R +FAT L G D+ IQ +LGH ++TT IY NV+ + E Y Sbjct: 289 NVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKYKN 342 >gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 348 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 29/54 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H R +FAT L G D+ IQ +LGH ++TT IY NV+ + E Y Sbjct: 291 NVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYVNVDKSSVKEKYKN 344 >gi|321271492|gb|ADW79581.1| putative site-specific recombinase [Escherichia coli] gi|332346551|gb|AEE59883.1| putative site-specific recombinase [Escherichia coli UMNK88] Length = 262 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|91780847|ref|YP_556054.1| putative phage integrase [Burkholderia xenovorans LB400] gi|91693507|gb|ABE36704.1| Putative phage integrase [Burkholderia xenovorans LB400] Length = 291 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + HTLRHSFATHLL D+R IQ +LGH++L T +Y V + + E+ Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHAKLENTALYVQVATDLLHEV 281 >gi|254244434|ref|ZP_04937756.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192] gi|126197812|gb|EAZ61875.1| hypothetical protein PA2G_05292 [Pseudomonas aeruginosa 2192] Length = 333 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 269 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHLASAM 316 >gi|315268238|gb|ADT95091.1| integrase family protein [Shewanella baltica OS678] Length = 318 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ + E Sbjct: 265 HVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEA 311 >gi|284924596|emb|CBG27770.1| site-specific recombinase [Escherichia coli] Length = 268 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 370 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H++RHS+AT L ++++QS++GHS +STT IYT+V + +EI D+ Sbjct: 314 SFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEILDK 366 >gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815] gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+LRH+FATHLL G D+R IQ ++GH L+TT Y + + Sbjct: 219 PVTPHSLRHAFATHLLETGTDVRRIQLLMGHRSLATTSRYLRIATS 264 >gi|320173114|gb|EFW48332.1| Integrase [Shigella dysenteriae CDC 74-1112] Length = 375 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H L H+FA+H + NGG++ ++Q ILGH+++ TT IY ++ + + + +P Sbjct: 320 HALHHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHLAPDYLQDA-ARFNP 371 >gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2] gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10] gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2] gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10] Length = 253 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RHSFA L+ G L IQ++LGH+ +STT IY + S+ Sbjct: 200 KVTPHIFRHSFAVALIERGVPLNKIQALLGHANISTTSIYLKIASE 245 >gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502] Length = 331 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ L+ G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 276 SIYPHLFRHSFATNKLNAGMPMPVIQHLMGHESPATTQIYAELSEENIKHEYKK 329 >gi|89147388|gb|ABD62554.1| integrase [uncultured bacterium] Length = 163 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 31/42 (73%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H LRH FATHLL+ G D+R+IQ +LGH L TT IYT+V Sbjct: 121 ASIHCLRHRFATHLLAAGTDIRTIQLLLGHRSLQTTMIYTHV 162 >gi|224369730|ref|YP_002603894.1| phage-specific recombinase/integrase XerD [Desulfobacterium autotrophicum HRM2] gi|223692447|gb|ACN15730.1| phage-specific recombinase/integrase XerD [Desulfobacterium autotrophicum HRM2] Length = 337 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RHS A HLL +L I+ LGH + TT+IY +S+ + +P I Sbjct: 257 KVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTEIYAKCDSELKRQAIANAYPDI 315 >gi|217032477|ref|ZP_03437969.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128] gi|298736373|ref|YP_003728899.1| XerCD family integrase/recombinase [Helicobacter pylori B8] gi|216945823|gb|EEC24444.1| hypothetical protein HPB128_156g7 [Helicobacter pylori B128] gi|298355563|emb|CBI66435.1| integrase-recombinase protein (XerCD family) [Helicobacter pylori B8] Length = 355 Score = 77.6 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLKEA 348 >gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 165 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 108 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 158 >gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 292 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHPRA 292 >gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 402 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ E + Sbjct: 345 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 395 >gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 258 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+H + NGG++ ++Q ILGHS L+ T Y ++ + + Sbjct: 189 HALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAHLYPDHLQDAIK 237 >gi|295097795|emb|CBK86885.1| Site-specific recombinase XerD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 258 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 36/51 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRHSFATHL+ G + +IQ++LGH +T++Y +V++K +M I Sbjct: 225 AATPHCLRHSFATHLMEQGIERHNIQALLGHRDPKSTEVYLHVSNKSLMGI 275 >gi|160876042|ref|YP_001555358.1| integrase family protein [Shewanella baltica OS195] gi|160861564|gb|ABX50098.1| integrase family protein [Shewanella baltica OS195] Length = 318 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++Q ILGH + T Y ++ + E Sbjct: 265 HVLRHTFASHFVMNGGNILTLQKILGHGSIQMTMRYAHLAPDHLQEA 311 >gi|73853284|ref|YP_308780.1| site-specific recombinase [Escherichia coli] gi|73476868|gb|AAZ76483.1| Site-specific recombinase [Escherichia coli] Length = 268 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15] Length = 327 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 34/48 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRH+FA+H L NGGD+ ++Q ILGHS +S T Y+++ + + + Sbjct: 273 AHVLRHTFASHFLMNGGDIVTLQKILGHSHISMTLRYSHLAPEHLSKA 320 >gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] Length = 397 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAV 389 >gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 376 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 319 TFHTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 369 >gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 292 Score = 77.6 bits (191), Expect = 6e-13, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINYIYMHTHPRA 292 >gi|319896531|ref|YP_004134724.1| hypothetical protein HIBPF01270 [Haemophilus influenzae F3031] gi|317432033|emb|CBY80381.1| phage integrase [Haemophilus influenzae F3031] Length = 337 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + +P Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 331 >gi|331083037|ref|ZP_08332156.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399774|gb|EGG79435.1| hypothetical protein HMPREF0992_01080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 281 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQ 62 HTLRH+FAT N + + +QS+LGHS +S T IYT+V +M E + + TQ Sbjct: 202 HPHTLRHTFATRCFENKMEPKVVQSLLGHSSISITLNIYTHVLDNKMDEEIKKFGVAKTQ 261 Query: 63 KD 64 D Sbjct: 262 ND 263 >gi|330502131|ref|YP_004379000.1| putative integrase [Pseudomonas mendocina NK-01] gi|328916417|gb|AEB57248.1| putative integrase [Pseudomonas mendocina NK-01] Length = 312 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH LRH+FA+H + NGG++ ++Q I GHS L+ T Y ++ + + Sbjct: 258 AHALRHTFASHFIQNGGNILTLQKIQGHSCLAMTMRYAHLAPDHLQDAVR 307 >gi|254504131|ref|ZP_05116282.1| site-specific recombinase, phage integrase family [Labrenzia alexandrii DFL-11] gi|222440202|gb|EEE46881.1| site-specific recombinase, phage integrase family [Labrenzia alexandrii DFL-11] Length = 171 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/52 (50%), Positives = 36/52 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T HTLRHSFATHLL D+R IQ +LGH++L+TT YT+V ++ + + Sbjct: 101 PATLHTLRHSFATHLLEANTDVRIIQVLLGHTKLTTTARYTHVATRTIRDTV 152 >gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 293 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA 293 >gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627] gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627] gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 330 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + +++ + +P Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLLDAIN-FNPLA 321 >gi|327538850|gb|EGF25494.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 312 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 29/44 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HTLRHS+ATHLL G L+ IQ LGHS L TT +Y ++ Sbjct: 241 KVSTHTLRHSYATHLLEAGVSLKVIQKYLGHSSLQTTMVYLHLT 284 >gi|240172885|ref|ZP_04751544.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 372 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSF THLL G D +Q LGHS STT +YT+V S + Q Sbjct: 308 SLHALRHSFTTHLLEAGYDPLFVQQQLGHSFASTTSLYTSVTSDFKQRVVQQ 359 >gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] Length = 251 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+F HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 179 PVTPHSLRHAFVVHLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKV 226 >gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 293 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA 293 >gi|224418352|ref|ZP_03656358.1| integrase-recombinase protein XERCD family [Helicobacter canadensis MIT 98-5491] gi|253827673|ref|ZP_04870558.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491] gi|313141883|ref|ZP_07804076.1| integrase-recombinase protein xercd family protein [Helicobacter canadensis MIT 98-5491] gi|253511079|gb|EES89738.1| integrase/recombinase XerD [Helicobacter canadensis MIT 98-5491] gi|313130914|gb|EFR48531.1| integrase-recombinase protein xercd family protein [Helicobacter canadensis MIT 98-5491] Length = 353 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRHSFAT L DL +Q LGH+ + T++IYT+ + +++ Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASVETSRIYTHFDKQKLK 347 >gi|223041236|ref|ZP_03611485.1| hydrogenase expression/formation protein [Campylobacter rectus RM3267] gi|222877495|gb|EEF12627.1| hydrogenase expression/formation protein [Campylobacter rectus RM3267] Length = 354 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 33/46 (71%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q +LGH+ L+T++IYT+ +S+++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEVLGHASLNTSRIYTHFDSEKLK 342 >gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] Length = 293 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 41/57 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L+N +L +++ +LGHS L+TT+IYT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATAMLNNEAELGAVKELLGHSSLTTTEIYTHTTFEELKKVYEQAHPRA 293 >gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 332 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T Y + + + Sbjct: 268 HALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNYAHFAPDFLQDAI 315 >gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 292 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 38/57 (66%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+N L +++ +LGH L+TT+IYT+ + + ++Y Q HP Sbjct: 236 SPHVLRHSFATAMLNNQAGLEAVKELLGHESLTTTEIYTHTTFEELKKVYQQAHPRA 292 >gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S + H LRH+ A HLL G ++ I+ ILGH+ + TTQIY + N++ ++ Sbjct: 257 SISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASANTQMKRAALEK 310 >gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] Length = 371 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H++RHS+AT L ++++QS++GHS + TT IYT+V + MEI D+ Sbjct: 315 SFHSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQDKKMEIIDK 367 >gi|294139967|ref|YP_003555945.1| phage integrase family protein [Shewanella violacea DSS12] gi|293326436|dbj|BAJ01167.1| phage integrase family protein [Shewanella violacea DSS12] Length = 152 Score = 77.2 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 26/45 (57%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+QS+LGH+ L+TT YT + Sbjct: 83 SISPHNLRHSYATHLLEQGLDLRSVQSLLGHNSLNTTARYTRLTQ 127 >gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens FD-1] Length = 327 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 2/65 (3%) Query: 3 TTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT + G D+ +++ +LGH+ ++TT+IYT+++++ + + ++P Sbjct: 262 ITTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEIYTHLSNENVRSAIE-SNPLSK 320 Query: 62 QKDKK 66 K Sbjct: 321 VKSDD 325 >gi|326626310|gb|EGE32654.1| resolvase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 260 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232 >gi|209916841|ref|YP_002291161.1| resolvase [Escherichia coli SE11] gi|209915267|dbj|BAG80339.1| resolvase [Escherichia coli SE11] Length = 268 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 361 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+HL+ G LR++Q +LGHS + T Y +++ K + Sbjct: 296 HDLRHTFASHLVMRGVPLRAVQELLGHSTIEMTMRYAHLSPKVLHSAVQ 344 >gi|146307138|ref|YP_001187603.1| phage integrase family protein [Pseudomonas mendocina ymp] gi|145575339|gb|ABP84871.1| phage integrase family protein [Pseudomonas mendocina ymp] Length = 335 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + GG++ ++Q ILGH+ L+ T Y +++ + + Sbjct: 273 HVLRHTFASHFVMRGGNILTLQKILGHTSLAMTMRYAHLSPDHLQDAL 320 >gi|331685896|ref|ZP_08386473.1| resolvase (Protein D) [Escherichia coli H299] gi|331076849|gb|EGI48070.1| resolvase (Protein D) [Escherichia coli H299] Length = 256 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|293396900|ref|ZP_06641174.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] gi|291420371|gb|EFE93626.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] Length = 372 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ +Q ILGH + T Y ++ + + E Q +P T Sbjct: 309 HVLRHTFAAHFMMSGGNILVLQRILGHHDIKMTMRYAHLAPEHL-ETALQFNPLAT 363 >gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 397 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAI 389 >gi|325963595|ref|YP_004241501.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323469682|gb|ADX73367.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 371 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 HTLRH+F T L G DL +Q++LGH+ + TT Y ++ + +D I + Sbjct: 311 HPHTLRHTFGTALAEAGVDLAVMQALLGHAHVDTTARYIHLAPAHVKAEFDAARARIRDR 370 Query: 64 D 64 Sbjct: 371 S 371 >gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] Length = 381 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ E + Sbjct: 324 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 374 >gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1] gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1] gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 397 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAI 389 >gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 390 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 32/47 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+++G L +Q +LGHS+LSTTQ Y ++ + E Sbjct: 327 HDLRHSFASFLVNSGRSLYEVQKLLGHSQLSTTQRYAHLTEDTLKEA 373 >gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] Length = 381 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ E + Sbjct: 324 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 374 >gi|17981816|ref|NP_536807.1| integrase [Haemophilus phage HP2] gi|145639521|ref|ZP_01795125.1| putative integrase [Haemophilus influenzae PittII] gi|13752189|gb|AAK37784.1| integrase [Haemophilus phage HP2] gi|145271312|gb|EDK11225.1| putative integrase [Haemophilus influenzae PittII] gi|309750497|gb|ADO80481.1| integrase [Haemophilus influenzae R2866] Length = 337 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + +P Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 331 >gi|168822775|ref|ZP_02834775.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340857|gb|EDZ27621.1| Rsd [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320089223|emb|CBY98976.1| Resolvase Protein D [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 260 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQAMMGHKSISSTEVYTKV 232 >gi|309795404|ref|ZP_07689822.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308121054|gb|EFO58316.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 369 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y +++ + E + +P T Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLSPDHL-ETALRFNPLAT 361 >gi|300916302|ref|ZP_07133049.1| site-specific recombinase, phage integrase family [Escherichia coli MS 115-1] gi|300416391|gb|EFJ99701.1| site-specific recombinase, phage integrase family [Escherichia coli MS 115-1] Length = 376 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 307 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 361 >gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 397 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RH+ AT +L+ G DL ++ +LGH ++TTQIY + K+ E Sbjct: 339 ISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKKEEAI 389 >gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6] gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6] Length = 381 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + HT RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ E + Sbjct: 324 SYHTSRHTFATMMLTLGADLYTVSKLLGHADVKMTQVYAKIINKKKDEAVN 374 >gi|215408000|emb|CAS02327.1| integron integrase [uncultured bacterium] Length = 154 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 23/39 (58%), Positives = 29/39 (74%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 T HTLRHSFAT LL +G D+R++Q +LGHS + TT I Sbjct: 116 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPTTMI 154 >gi|221067020|ref|ZP_03543125.1| integrase family protein [Comamonas testosteroni KF-1] gi|220712043|gb|EED67411.1| integrase family protein [Comamonas testosteroni KF-1] Length = 322 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRH+FA+HL L +IQ +LGH TT Y ++ + + DQ HP Sbjct: 254 LRLTPHALRHAFASHLYQGKASLHTIQLLLGHECQETTAHYVSIFHEDSRALVDQHHPRS 313 Query: 61 T 61 Sbjct: 314 R 314 >gi|317049649|ref|YP_004117297.1| integrase family protein [Pantoea sp. At-9b] gi|316951266|gb|ADU70741.1| integrase family protein [Pantoea sp. At-9b] Length = 343 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLQRILGHTDIKVTMRYAHFAPDHLDDA 328 >gi|221218554|ref|YP_002527512.1| hypothetical protein pO103_57 [Escherichia coli] gi|310286463|ref|YP_003937724.1| resolvase (protein D) [Escherichia coli] gi|215252882|gb|ACJ63541.1| conserved hypothetical protein [Escherichia coli] gi|308826792|emb|CBX36056.1| resolvase (Protein D) [Escherichia coli] Length = 263 Score = 77.2 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|209921988|ref|YP_002296061.1| resolvase [Escherichia coli SE11] gi|307313345|ref|ZP_07592968.1| integrase family protein [Escherichia coli W] gi|209915166|dbj|BAG80239.1| resolvase [Escherichia coli SE11] gi|306906767|gb|EFN37277.1| integrase family protein [Escherichia coli W] gi|315063802|gb|ADT78128.1| Resolvase [Escherichia coli W] gi|323380941|gb|ADX53208.1| integrase family protein [Escherichia coli KO11] Length = 259 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|148589|gb|AAA24900.1| Protein D [Plasmid F] Length = 256 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|331646987|ref|ZP_08348086.1| resolvase (Protein D) [Escherichia coli M605] gi|331044304|gb|EGI16435.1| resolvase (Protein D) [Escherichia coli M605] Length = 260 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 232 >gi|157418199|ref|YP_001481271.1| resolvase [Escherichia coli APEC O1] gi|169546498|ref|YP_001711907.1| hypothetical protein pVM01_p058 [Escherichia coli] gi|301646995|ref|ZP_07246831.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331652534|ref|ZP_08353545.1| resolvase (Protein D) [Escherichia coli M718] gi|88770249|gb|ABD51686.1| resolvase [Escherichia coli APEC O1] gi|168831050|gb|ACA34831.1| unknown [Escherichia coli] gi|301074840|gb|EFK89646.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331049640|gb|EGI21706.1| resolvase (Protein D) [Escherichia coli M718] Length = 263 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|330399472|ref|YP_004030570.1| DNA integration/recombination/inversion protein [Burkholderia rhizoxinica HKI 454] gi|312170209|emb|CBW77248.1| DNA integration/recombination/inversion protein [Burkholderia rhizoxinica HKI 454] Length = 102 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 42/66 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H H+ T +L NG D+R +Q +L H++L++TQ+YT V + M EIY THP+ Sbjct: 16 SGSCHLFHHTMVTLMLENGADVRFMQVMLHHAQLTSTQMYTQVAIREMNEIYTATHPAWL 75 Query: 62 QKDKKN 67 ++ ++ Sbjct: 76 ERPEQQ 81 >gi|300837023|ref|YP_003754077.1| resolvase [Klebsiella pneumoniae] gi|299474827|gb|ADJ18651.1| resolvase [Klebsiella pneumoniae] Length = 259 Score = 77.2 bits (190), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|331675773|ref|ZP_08376491.1| resolvase (Protein D) [Escherichia coli H591] gi|331076547|gb|EGI47823.1| resolvase (Protein D) [Escherichia coli H591] Length = 259 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|59712648|ref|YP_205424.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] gi|59480749|gb|AAW86536.1| DNA integration/recombination/invertion protein [Vibrio fischeri ES114] Length = 325 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRH+FA+H + NGG++ +Q ILGH+ ++ T Y + + + + + +P Sbjct: 266 STHVLRHTFASHFMMNGGNILVLQQILGHASITDTMKYAHFSPAHLEDAI-KLNPLAK 322 >gi|253801000|ref|YP_003034001.1| site-specific recombinase [Escherichia coli Vir68] gi|253721177|gb|ACT33486.1| site-specific recombinase [Escherichia coli Vir68] Length = 268 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V + M + Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDMAARHR 250 >gi|330997656|ref|ZP_08321501.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570184|gb|EGG51924.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 409 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHSF+T + L NG + ++ +LGH+ + TTQ+Y V K++ E D+ Sbjct: 345 SYHMGRHSFSTLMTLENGVPIETVSRMLGHADIRTTQVYARVTPKKLFEDMDKY 398 >gi|210619453|ref|ZP_03292039.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] gi|210148851|gb|EEA79860.1| hypothetical protein CLONEX_04273 [Clostridium nexile DSM 1787] Length = 288 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H+ RH+F THL NG DL +IQ+ LGH L++T IY ++ + M + Sbjct: 226 ITCHSFRHAFGTHLYENGADLLTIQAYLGHKSLASTSIYVHLATNSMHKAV 276 >gi|327536637|gb|AEA95469.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Dublin] Length = 256 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 228 >gi|300824703|ref|ZP_07104809.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522793|gb|EFK43862.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 268 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|107099659|ref|ZP_01363577.1| hypothetical protein PaerPA_01000677 [Pseudomonas aeruginosa PACS2] Length = 289 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GGD+ ++Q ILGHS ++ T Y +++ + + Sbjct: 225 HILRHTFASHYMMGGGDILTLQRILGHSSITMTMRYAHLSPEHL 268 >gi|54302869|ref|YP_132862.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9] gi|46916293|emb|CAG23062.1| hypothetical protein PBPRB1190 [Photobacterium profundum SS9] Length = 141 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 33/45 (73%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+Q +LGH+ L++T YT++ Sbjct: 72 SISPHNLRHSYATHLLEQGLDLRSVQHLLGHNSLNSTARYTHLTD 116 >gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 292 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 39/57 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H LRH+FAT ++++G L S+Q +LGH L+TT++YT+ +++ +Y + HP Sbjct: 236 TPHVLRHTFATAMMNHGAGLESVQQLLGHQSLTTTEVYTHTTFEQLKRVYMKAHPRA 292 >gi|253689521|ref|YP_003018711.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756099|gb|ACT14175.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 352 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMRYAHFAPDHLEEA 330 >gi|189017167|ref|YP_001909484.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99] gi|188027104|emb|CAO94888.1| Predicted phage integrase [Erwinia tasmaniensis Et1/99] Length = 299 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 ++ T HT RHSFA HLL +G ++IQ +LGH +T++YT V Sbjct: 230 ITVTPHTFRHSFAMHLLMSGVPEKTIQGLLGHRYARSTEVYTRV 273 >gi|291288940|ref|YP_003517443.1| resolvase [Klebsiella pneumoniae] gi|290792072|gb|ADD63398.1| resolvase [Klebsiella pneumoniae] Length = 264 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 320 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T + LRH+FA L GGD S+Q ILGH+ L+ T+ Y ++ + E++++ P Sbjct: 243 VKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVRLSQDDIKEVHEKASP 300 >gi|322836440|ref|YP_004215817.1| integrase [Rahnella sp. Y9602] gi|321170993|gb|ADW76690.1| integrase family protein [Rahnella sp. Y9602] Length = 260 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTRV 231 >gi|262273295|ref|ZP_06051110.1| integrase [Grimontia hollisae CIP 101886] gi|262222668|gb|EEY73978.1| integrase [Grimontia hollisae CIP 101886] Length = 346 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H RH+FA+H + +GGD+ ++Q ILGH+ + T Y + + + Sbjct: 287 HVFRHTFASHFMQHGGDILTLQRILGHANIQMTMKYAHFAPDHLQQAV 334 >gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] Length = 331 Score = 76.8 bits (189), Expect = 8e-13, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R+++ +LGH +STTQIYT+++ + + + ++ Sbjct: 271 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDDEDLKKAVNK 323 >gi|329961823|ref|ZP_08299837.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328531263|gb|EGF58107.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 394 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV ++ ++ H I Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNHSLIP 389 Query: 62 QKDK 65 K K Sbjct: 390 WKKK 393 >gi|170650847|ref|YP_001739996.1| resolvase [Escherichia coli SMS-3-5] gi|170522123|gb|ACB20300.1| resolvase [Escherichia coli SMS-3-5] gi|312949050|gb|ADR29876.1| Resolvase [Escherichia coli O83:H1 str. NRG 857C] Length = 258 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 186 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 229 >gi|317490960|ref|ZP_07949396.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920507|gb|EFV41830.1| phage integrase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 368 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++ +LGH+ + T IY + + + Sbjct: 282 HVLRHTFASHFMMNGGNILVLRDVLGHADIRMTMIYAHFAPDHLEDA 328 >gi|161506594|ref|YP_001573715.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348885|ref|YP_001942080.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160346832|gb|ABX19915.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189339023|dbj|BAG48090.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|325522069|gb|EGD00741.1| tyrosine recombinase [Burkholderia sp. TJI49] Length = 770 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+FA H L G D+R +Q +LGH+ L TT +YT ++ R + + Sbjct: 591 ASTHWLRHTFANHGLDAGADIRDMQELLGHASLGTTTLYTKADAVRQFQSVEA 643 >gi|9628601|ref|NP_043466.1| integrase [Haemophilus phage HP1] gi|138561|sp|P21442|VINT_BPHP1 RecName: Full=Integrase gi|459175|gb|AAB09182.1| integrase [Haemophilus phage HP1] Length = 337 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + +P Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 331 >gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007] Length = 331 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + + + +P Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAI-SFNPLA 321 >gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] Length = 355 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+ AT + G D+R++Q +LGH +STT+IYT++ + + Sbjct: 292 KITVHKLRHTAATLMYKYGQVDIRTLQKVLGHENVSTTEIYTHIEDDDVRAALYK 346 >gi|132266|sp|P06615|REDF_ECOLI RecName: Full=Resolvase; AltName: Full=Protein D gi|41210|emb|CAA28640.1| unnamed protein product [Escherichia coli] Length = 268 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|332661998|ref|YP_004451467.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] gi|332337495|gb|AEE54594.1| integrase family protein [Haliscomenobacter hydrossis DSM 1100] Length = 501 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT ++ G D+R Q +LGH+ TT+IY +V + + + Sbjct: 131 VHPHMLRHTFATRVVREGNDIRVAQKLLGHNSQLTTEIYLHVEDQELQQAIR 182 >gi|307314516|ref|ZP_07594119.1| integrase family protein [Escherichia coli W] gi|306905939|gb|EFN36461.1| integrase family protein [Escherichia coli W] gi|315060085|gb|ADT74412.1| integrase family protein [Escherichia coli W] gi|323379357|gb|ADX51625.1| integrase family protein [Escherichia coli KO11] Length = 350 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] Length = 296 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRHSFAT +L+N +L +++ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 240 SPHVLRHSFATSMLNNHAELGAVKELLGHESLTTTEVYTHTTFEELKKVYEQAHPRA 296 >gi|170697418|ref|ZP_02888509.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170137597|gb|EDT05834.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 609 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 ST+ H RH+ T +L+ G L +Q LGH+ L TT IY + RM + H + Sbjct: 547 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLK 606 Query: 62 Q 62 Q Sbjct: 607 Q 607 >gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] Length = 297 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++ H LRH+ AT LS+G +LR IQ +LGH+ TT Y V K++++ Sbjct: 236 ITLHPHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLKA 287 >gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 297 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 ++ H LRH+ AT LS+G +LR IQ +LGH+ TT Y V K++++ Sbjct: 236 ITLHPHKLRHTAATMALSSGAELRVIQELLGHASPVTTARYAKVGQKQLLKA 287 >gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] Length = 379 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA +L G D+ ++ +LGH LSTTQIY V K + Sbjct: 322 ITFHCGRHTFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVAK 374 >gi|301022658|ref|ZP_07186514.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300397408|gb|EFJ80946.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 299 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 266 >gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] Length = 293 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT LLS G +L I LGH+ + TTQIY + + ++ +Y + Sbjct: 240 PHRLRHTFATELLSKGAELSFIADELGHTDIRTTQIYARLPKQELITLYRKY 291 >gi|189403476|ref|ZP_02795705.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189360465|gb|EDU78884.1| resolvase [Escherichia coli O157:H7 str. EC4486] Length = 259 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|148270896|ref|YP_001245356.1| phage integrase family protein [Thermotoga petrophila RKU-1] gi|147736440|gb|ABQ47780.1| phage integrase family protein [Thermotoga petrophila RKU-1] Length = 256 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RHSFA L+ G L IQ++LGH+ +STT IY + S+ Sbjct: 203 KVTPHIFRHSFAVALIERGIPLNKIQALLGHANISTTSIYLKIASE 248 >gi|331656870|ref|ZP_08357832.1| integrase for prophage [Escherichia coli TA206] gi|331055118|gb|EGI27127.1| integrase for prophage [Escherichia coli TA206] Length = 350 Score = 76.8 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHPRA 292 >gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 419 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RH+FAT LS+ D+ ++ +LGH+ + TTQIY V ++ + Sbjct: 355 KITYHCFRHTFATLQLSSSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405 >gi|117623084|ref|YP_851997.1| integrase [Escherichia coli APEC O1] gi|115512208|gb|ABJ00283.1| Integrase [Escherichia coli APEC O1] Length = 331 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T Y + + + Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318 >gi|1679807|emb|CAA96221.1| integrase [Haemophilus phage S2] Length = 337 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + +P Sbjct: 280 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAL-KFNP 331 >gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] Length = 292 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ IY THP Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINFIYMNTHPRA 292 >gi|83404838|ref|YP_424852.1| putative resolvase [Escherichia coli] gi|83308563|emb|CAI79535.1| putative resolvase [Escherichia coli] Length = 228 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|9507757|ref|NP_061423.1| site-specific recombinase [Plasmid F] gi|58383299|ref|YP_194871.1| resolvase protein D [Salmonella enterica subsp. enterica serovar Typhimurium] gi|187736744|ref|YP_001816482.1| ResD [Escherichia coli 1520] gi|256367711|ref|YP_003108268.1| ResD [Escherichia coli] gi|291289364|ref|YP_003517696.1| resolvase [Klebsiella pneumoniae] gi|302595370|ref|YP_003829232.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli] gi|302595489|ref|YP_003829107.1| site-specific resolvase; cleaves at rfsF site [Escherichia coli] gi|309797304|ref|ZP_07691698.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|8918867|dbj|BAA97914.1| resolvase [Plasmid F] gi|37962778|gb|AAR05725.1| resolvase protein D [Salmonella enterica subsp. enterica serovar Typhimurium] gi|62550777|emb|CAH64700.1| resolvase [uncultured bacterium] gi|172051326|emb|CAP07668.1| ResD [Escherichia coli] gi|228480648|gb|ACQ41975.1| ResD [Escherichia coli] gi|290792325|gb|ADD63650.1| resolvase [Klebsiella pneumoniae] gi|302310130|gb|ADL14001.1| ResD [Escherichia coli] gi|302310258|gb|ADL14126.1| ResD [Escherichia coli] gi|308119051|gb|EFO56313.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 268 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 293 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT+++ G D+ ++ ILGH+ L+TT IYT +SK M++ ++ Sbjct: 236 LDLHPHVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTKPDSKTMLKALEK 290 >gi|12084943|ref|NP_073236.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2] gi|60115476|ref|YP_209268.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71559012|ref|YP_271739.1| resolvase [Salmonella enterica] gi|161867892|ref|YP_001598073.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|167995062|ref|ZP_02576152.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|169647098|ref|YP_001716122.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|198241686|ref|YP_002213875.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|224504248|ref|YP_002635587.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261888697|ref|YP_003264384.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|305696866|ref|YP_003864181.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|12060313|dbj|BAB20519.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|16445238|gb|AAL23456.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|45359300|gb|AAS58887.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|68166311|gb|AAY88072.1| resolvase [Salmonella enterica] gi|161087271|gb|ABX56741.1| Rsd [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169246231|gb|ACA51205.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|197936202|gb|ACH73536.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327175|gb|EDZ13939.1| Rsd [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|224470957|gb|ACN48786.1| resolvase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261857283|emb|CBA11347.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|267990067|gb|ACY86464.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|304376168|dbj|BAJ15330.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312915724|dbj|BAJ39697.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|322712981|gb|EFZ04553.1| resolvase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323133031|gb|ADX20460.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326621616|gb|EGE27962.1| Rsd [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|327536763|gb|AEA95594.1| resolvase [Salmonella enterica subsp. enterica serovar Dublin] gi|332991453|gb|AEF10435.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 260 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +Q+++GH +S+T++YT V Sbjct: 189 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEVYTKV 232 >gi|170769173|ref|ZP_02903626.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|191167584|ref|ZP_03029395.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|300926544|ref|ZP_07142332.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|170121825|gb|EDS90756.1| site-specific recombinase, phage integrase family [Escherichia albertii TW07627] gi|190902345|gb|EDV62083.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|294492327|gb|ADE91083.1| site-specific recombinase, phage integrase family [Escherichia coli IHE3034] gi|300417435|gb|EFK00746.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|315296162|gb|EFU55470.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] gi|324116116|gb|EGC10040.1| phage integrase [Escherichia coli E1167] Length = 331 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T Y + + + Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318 >gi|318606029|emb|CBY27527.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 314 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA+H + GG++ +Q ILGHS + T Y++ + + +P Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI-HFNPLAR 296 >gi|307826955|ref|ZP_07656735.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307732373|gb|EFO03296.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 277 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 30/45 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + HTLRHSFATHLL D+R IQ +LGH +L TT +Y V + Sbjct: 232 VSMHTLRHSFATHLLEQKVDIRVIQVLLGHKKLETTALYAQVATD 276 >gi|225353239|gb|ACN88324.1| integrase [Riemerella anatipestifer] Length = 284 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/37 (62%), Positives = 29/37 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 248 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 284 >gi|194433591|ref|ZP_03065868.1| site-specific recombinase [Shigella dysenteriae 1012] gi|194418183|gb|EDX34275.1| site-specific recombinase [Shigella dysenteriae 1012] Length = 252 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 181 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224 >gi|13272355|gb|AAK17117.1|AF302086_1 DNA integrase IntI [Pseudomonas aeruginosa] Length = 317 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 23/37 (62%), Positives = 29/37 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT 38 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTT 309 >gi|301022944|ref|ZP_07186759.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300397285|gb|EFJ80823.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 331 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T Y + + + Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318 >gi|255322209|ref|ZP_05363355.1| hydrogenase expression/formation protein [Campylobacter showae RM3277] gi|255300582|gb|EET79853.1| hydrogenase expression/formation protein [Campylobacter showae RM3277] Length = 354 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 32/46 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S+++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 342 >gi|126667008|ref|ZP_01737983.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] gi|126628414|gb|EAZ99036.1| hypothetical protein MELB17_05659 [Marinobacter sp. ELB17] Length = 303 Score = 76.8 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 25/48 (52%), Positives = 32/48 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H+LRHSFATHLL NG +LRSIQ++LGH+ TT YT + + Sbjct: 236 VHIHSLRHSFATHLLENGVNLRSIQTLLGHASPVTTARYTRMTHEAQQ 283 >gi|157155436|ref|YP_001462104.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157077466|gb|ABV17174.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] gi|324113805|gb|EGC07780.1| phage integrase [Escherichia fergusonii B253] Length = 331 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T Y + + + Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSNIQQTMTYAHFAPDFLQDAV 318 >gi|108799567|ref|YP_639764.1| phage integrase [Mycobacterium sp. MCS] gi|119868677|ref|YP_938629.1| phage integrase family protein [Mycobacterium sp. KMS] gi|108769986|gb|ABG08708.1| phage integrase [Mycobacterium sp. MCS] gi|119694766|gb|ABL91839.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 373 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHS+ THLL G D +Q LGHS STT +YT+V+S ++ Q Sbjct: 309 SLHALRHSYTTHLLEAGYDPLFVQQQLGHSYASTTSLYTSVSSDFKQKVIQQ 360 >gi|301647508|ref|ZP_07247310.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|301074355|gb|EFK89161.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] Length = 262 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 191 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 234 >gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans 743B] gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B] Length = 311 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT++ ++ + Sbjct: 249 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIYEHQLQSAVN 302 >gi|215485933|ref|YP_002328364.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|215264005|emb|CAS08346.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 32/45 (71%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H+LRHSFA HLL +G DL ++QS++GH + TT+IY + + Sbjct: 222 TVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQMIQSK 266 >gi|193063096|ref|ZP_03044188.1| resolvase [Escherichia coli E22] gi|192931355|gb|EDV83957.1| resolvase [Escherichia coli E22] Length = 243 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 172 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 215 >gi|254776174|ref|ZP_05217690.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. avium ATCC 25291] Length = 47 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 25/47 (53%), Positives = 33/47 (70%) Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 THLL G DLR +Q +LGHS L+TTQ+YT+V R+ ++DQ HP Sbjct: 1 THLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 47 >gi|28373036|ref|NP_783718.1| Orf81 [Yersinia enterocolitica] gi|32470332|ref|NP_863561.1| hypothetical protein pYVe8081_p56 [Yersinia enterocolitica] gi|122815850|ref|YP_001004116.1| putative resolvase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|14579390|gb|AAK69267.1|AF336309_62 unknown [Yersinia enterocolitica] gi|23630608|gb|AAN37564.1| Orf81 [Yersinia enterocolitica] gi|121663724|emb|CAL10093.1| putative resolvase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923273|emb|CBW54739.1| p64 in pYVa127/90, site-specific recombinase homologous to XerD/IntI [Yersinia enterocolitica (type O:8)] Length = 244 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSFA HLL NG + +Q+ +GH +T+IYT + Sbjct: 175 IPITPHTFRHSFAMHLLQNGLPFKVLQAYMGHQDTKSTEIYTRI 218 >gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 345 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+HL+ NG DL+++Q +LGH + T Y++++ + + Sbjct: 278 FHDLRHTFASHLIMNGVDLKTVQELLGHKTIKMTLKYSHLSKAHKEKAVN 327 >gi|109947411|ref|YP_664639.1| integrase-recombinase protein [Helicobacter acinonychis str. Sheeba] gi|109714632|emb|CAJ99640.1| integrase-recombinase protein [Helicobacter acinonychis str. Sheeba] Length = 361 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 307 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 354 >gi|312969130|ref|ZP_07783337.1| integrase [Escherichia coli 2362-75] gi|312286532|gb|EFR14445.1| integrase [Escherichia coli 2362-75] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a] gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a] Length = 335 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + + + +P Sbjct: 273 HVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAHFSPDFLQDAI-SFNPLA 326 >gi|194430310|ref|ZP_03062803.1| resolvase [Escherichia coli B171] gi|194411640|gb|EDX27969.1| resolvase [Escherichia coli B171] Length = 253 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 181 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 224 >gi|10955421|ref|NP_053133.1| resolvase [Escherichia coli] gi|190014958|ref|YP_001965470.1| Putative resolvase [Escherichia coli] gi|191174386|ref|ZP_03035890.1| resolvase [Escherichia coli F11] gi|215276275|ref|YP_002332238.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218511244|ref|YP_002415702.1| putative resolvase (Protein D) [Escherichia coli 55989] gi|218692932|ref|YP_002406044.1| Resolvase [Escherichia coli UMN026] gi|256026287|ref|ZP_05440152.1| resolvase (protein D) [Escherichia sp. 4_1_40B] gi|256855302|ref|YP_003162546.1| putative resolvase [Escherichia coli] gi|293404649|ref|ZP_06648642.1| resolvase [Escherichia coli FVEC1412] gi|300897136|ref|ZP_07115593.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|6009447|dbj|BAA84906.1| Resolvase [Escherichia coli] gi|109389679|gb|ABG29598.1| Putative resolvase [Escherichia coli] gi|190905319|gb|EDV64954.1| resolvase [Escherichia coli F11] gi|215267871|emb|CAS07541.1| putative resolvase [Escherichia coli O127:H6 str. E2348/69] gi|218350095|emb|CAQ87514.1| Resolvase [Escherichia coli UMN026] gi|218359345|emb|CAU95831.1| putative resolvase (Protein D) [Escherichia coli 55989] gi|256275514|gb|ACU68787.1| putative resolvase [Escherichia coli] gi|281181668|dbj|BAI57997.1| resolvase [Escherichia coli SE15] gi|291428361|gb|EFF01387.1| resolvase [Escherichia coli FVEC1412] gi|300359078|gb|EFJ74948.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|315290869|gb|EFU50238.1| site-specific recombinase, phage integrase family [Escherichia coli MS 153-1] gi|324005322|gb|EGB74541.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] gi|324015231|gb|EGB84450.1| site-specific recombinase, phage integrase family [Escherichia coli MS 60-1] Length = 269 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|325855562|ref|ZP_08171873.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483776|gb|EGC86736.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 439 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEK 407 Query: 64 DKKN 67 +K+N Sbjct: 408 NKEN 411 >gi|149926485|ref|ZP_01914746.1| Phage integrase [Limnobacter sp. MED105] gi|149824848|gb|EDM84062.1| Phage integrase [Limnobacter sp. MED105] Length = 393 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 S +AH LRH+ +H+ ++G DLR I+ LGH+ +STT IY + + + H Sbjct: 331 SASAHWLRHTAGSHMANSGVDLRVIRDNLGHASISTTSIYLHTDDDQRHADTSTAH 386 >gi|323191016|gb|EFZ76283.1| integrase [Escherichia coli RN587/1] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 432 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + HT RH+FAT +L+ G DL + +LGH+ + TQ+Y + +K+ E + Sbjct: 375 SFHTSRHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINKKKDEAVN 425 >gi|188574132|ref|YP_001919300.1| resolvase [Escherichia coli 53638] gi|188501307|gb|ACD54442.1| resolvase [Escherichia coli 53638] Length = 226 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 155 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198 >gi|323184105|gb|EFZ69483.1| resolvase [Escherichia coli 1357] Length = 226 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 155 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 198 >gi|292659084|gb|ADE34467.1| RedF [Cloning vector pTARa] Length = 170 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 99 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 142 >gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320] gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320] Length = 327 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG + ++Q ILGH+ L T Y + + + Sbjct: 269 HVLRHTFATHFMINGGSIITLQRILGHASLKQTMTYAHFAPDFLQDAI 316 >gi|170020796|ref|YP_001725750.1| integrase family protein [Escherichia coli ATCC 8739] gi|169755724|gb|ACA78423.1| integrase family protein [Escherichia coli ATCC 8739] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|38638105|ref|NP_943215.1| resolvase [Erwinia amylovora] gi|37682003|gb|AAQ97890.1| ResD [Erwinia amylovora] gi|323700929|gb|ADY00082.1| resolvase [Escherichia coli] Length = 246 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSF HL+ +G L+ +Q+ GHSRL TT+ YT V Sbjct: 179 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 222 >gi|27383455|ref|NP_774985.1| resolvase [Citrobacter freundii] gi|216967835|ref|YP_002333343.1| ResD [Klebsiella pneumoniae] gi|27261308|gb|AAN87649.1| resolvase [Citrobacter freundii] gi|215398007|gb|ACJ65284.1| resD [Klebsiella pneumoniae] Length = 242 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHSF HL+ +G L+ +Q+ GHSRL TT+ YT V Sbjct: 175 IPVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRV 218 >gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54] gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54] Length = 357 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ A+HLL G D+R + ILGHS L+ T YT++ R E + Sbjct: 301 PHDLRHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRRQETISK 351 >gi|331672347|ref|ZP_08373138.1| integrase for prophage [Escherichia coli TA280] gi|331070542|gb|EGI41906.1| integrase for prophage [Escherichia coli TA280] Length = 403 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 387 >gi|300825315|ref|ZP_07105396.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522214|gb|EFK43283.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 199 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 127 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 170 >gi|116687268|ref|YP_840514.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|116652983|gb|ABK13621.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 618 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 ST+ H RH+ T +L+ G L +Q LGH+ L TT IY + RM + H + Sbjct: 552 STSPHAFRHTVGTQMLAAGVALEVVQRTLGHASLGTTSIYVSPEEARMRREAAKYHARLA 611 Query: 62 QKD 64 + + Sbjct: 612 RDN 614 >gi|308182836|ref|YP_003926963.1| integrase-recombinase protein [Helicobacter pylori PeCan4] gi|308065021|gb|ADO06913.1| integrase-recombinase protein [Helicobacter pylori PeCan4] Length = 356 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349 >gi|297379871|gb|ADI34758.1| Tyrosine recombinase xerD [Helicobacter pylori v225d] Length = 356 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349 >gi|224582682|ref|YP_002636480.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467209|gb|ACN45039.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 308 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + + E + +P T Sbjct: 239 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPEHL-ETALRFNPLAT 293 >gi|146284649|ref|YP_001165602.1| phage integrase family protein [Enterobacter sp. 638] gi|145320782|gb|ABP62928.1| phage integrase family protein [Enterobacter sp. 638] Length = 257 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD-QTH 57 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V + + + Q H Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFH 244 >gi|331676587|ref|ZP_08377283.1| integrase for prophage [Escherichia coli H591] gi|320199038|gb|EFW73635.1| putative bacteriophage integrase [Escherichia coli EC4100B] gi|323942719|gb|EGB38884.1| phage integrase [Escherichia coli E482] gi|323953492|gb|EGB49358.1| phage integrase [Escherichia coli H252] gi|331075276|gb|EGI46574.1| integrase for prophage [Escherichia coli H591] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|194447058|ref|YP_002039074.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194358502|gb|ACF56946.1| resolvase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 268 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPITPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|157149514|ref|YP_001451592.1| resolvase [Escherichia coli E24377A] gi|157076681|gb|ABV16390.1| resolvase [Escherichia coli E24377A] Length = 237 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 166 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 209 >gi|16762232|ref|NP_457849.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143721|ref|NP_807063.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25301804|pir||AI0924 probable bacteriophage integrase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504536|emb|CAD09419.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139356|gb|AAO70923.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 419 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++AT LSNG DL ++ +LGH+ + TTQ YT V ++ D Sbjct: 358 ITFHCFRHTYATLQLSNGTDLFTVSKMLGHTNVRTTQRYTKVVDEKKENAADA 410 >gi|167553284|ref|ZP_02347034.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322250|gb|EDZ10089.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 342 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVK 325 >gi|149920837|ref|ZP_01909300.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818355|gb|EDM77807.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 369 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+FA+H + G +R +Q LGH+ ++ T Y +++ + Sbjct: 314 ITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLSPE 358 >gi|333008862|gb|EGK28322.1| integrase [Shigella flexneri K-272] gi|333020172|gb|EGK39442.1| integrase [Shigella flexneri K-227] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|58000293|ref|YP_190186.1| resolvase [Escherichia coli] gi|47716807|gb|AAT37583.1| resolvase [Escherichia coli] Length = 260 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 231 >gi|194438425|ref|ZP_03070515.1| integrase for prophage [Escherichia coli 101-1] gi|194422649|gb|EDX38646.1| integrase for prophage [Escherichia coli 101-1] Length = 350 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra] gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra] Length = 331 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ +++G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329 >gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 291 Score = 76.5 bits (188), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 36/56 (64%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H LRH+FAT+ ++ DL+++ ILGH ++TT IY + N +++ + + + Sbjct: 234 IRVTPHILRHTFATNCINKKMDLKTLSLILGHEDIATTSIYLHKNKEQIKKDFLEA 289 >gi|330814558|ref|YP_004362733.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374550|gb|AEA65901.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607 Query: 63 KDKK 66 +D K Sbjct: 608 RDLK 611 >gi|324016996|gb|EGB86215.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 227 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 163 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 206 >gi|315607651|ref|ZP_07882646.1| integrase [Prevotella buccae ATCC 33574] gi|315250834|gb|EFU30828.1| integrase [Prevotella buccae ATCC 33574] Length = 435 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ ++ K Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSK 411 Query: 64 DKKN 67 +KKN Sbjct: 412 EKKN 415 >gi|302595333|ref|YP_003829048.1| resolvase [Escherichia coli] gi|302310069|gb|ADL13942.1| TnpR [Escherichia coli] Length = 311 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 239 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 282 >gi|152973790|ref|YP_001338829.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150958572|gb|ABR80599.1| plasmid F resolvase-like protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 244 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 173 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 216 >gi|149921935|ref|ZP_01910378.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817197|gb|EDM76675.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 369 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H LRH+FA+H + G +R +Q LGH+ ++ T Y +++ + Sbjct: 314 ITPHVLRHTFASHAVLAGVPIRIVQGWLGHADITMTMRYAHLSPE 358 >gi|332673521|gb|AEE70338.1| tyrosine recombinase XerC [Helicobacter pylori 83] Length = 356 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349 >gi|317010894|gb|ADU84641.1| XerCD family integrase/recombinase [Helicobacter pylori SouthAfrica7] Length = 355 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|260593191|ref|ZP_05858649.1| integrase [Prevotella veroralis F0319] gi|260534899|gb|EEX17516.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFERF 398 >gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 280 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+FAT+LL +G DL ++ ++LGHSRL TT YT + M + + Sbjct: 228 KITPHVLRHTFATNLLRDGVDLVTVAALLGHSRLDTTARYTLPSYSHMENVVE 280 >gi|218454968|ref|YP_002381191.1| putative resolvase (Protein D) [Escherichia coli UMN026] gi|218350109|emb|CAQ87527.1| putative resolvase (Protein D) [Escherichia coli UMN026] Length = 296 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 266 >gi|118474094|ref|YP_892018.1| phage integrase family site specific recombinase [Campylobacter fetus subsp. fetus 82-40] gi|118413320|gb|ABK81740.1| site-specific recombinase, phage integrase family [Campylobacter fetus subsp. fetus 82-40] Length = 354 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342 >gi|323172233|gb|EFZ57871.1| integrase [Escherichia coli LT-68] Length = 347 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T K Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLATLSTK 339 >gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 331 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ +++G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 276 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 329 >gi|331662209|ref|ZP_08363132.1| integrase for prophage [Escherichia coli TA143] gi|331060631|gb|EGI32595.1| integrase for prophage [Escherichia coli TA143] Length = 351 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|306816761|ref|ZP_07450886.1| putative resolvase (Protein D) [Escherichia coli NC101] gi|305849888|gb|EFM50350.1| putative resolvase (Protein D) [Escherichia coli NC101] Length = 298 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 222 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 265 >gi|281422020|ref|ZP_06253019.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403809|gb|EFB34489.1| putative integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 298 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 31/45 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S T H LRHS ATHLL NG ++ +Q LGH+RL+TT +Y +V Sbjct: 236 SITIHDLRHSAATHLLENGENIVHVQKRLGHARLTTTMVYLHVAD 280 >gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 32/47 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L+++G L +Q +LGH+ +STTQ Y +++ + + Sbjct: 327 HDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAHLSQDTLKDA 373 >gi|116006838|ref|YP_788021.1| resolvase (protein D) [Escherichia coli] gi|115500693|dbj|BAF33924.1| resolvase (protein D) [Escherichia coli] Length = 278 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|282859345|ref|ZP_06268455.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587877|gb|EFB93072.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 355 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K Sbjct: 264 SYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDKLIAKHQEK 323 Query: 64 DKKN 67 +K+N Sbjct: 324 NKEN 327 >gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 367 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+ A+ L+ G D+R++Q ILGH L+ T Y++++ + + ++ Sbjct: 292 HTLRHTCASRLVMAGVDIRTVQEILGHKTLAMTTRYSHLSGAHLTQAVNR 341 >gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 330 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H +RH+FATH + NGG++ ++Q ILGH+ + T Y + + + + +P Sbjct: 268 HVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAHFSPDFLQDAV-SFNPLA 321 >gi|330822404|ref|YP_004362625.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374241|gb|AEA65595.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 548 TSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLAA 607 Query: 63 KDKK 66 +D K Sbjct: 608 RDLK 611 >gi|157149457|ref|YP_001451484.1| resolvase [Escherichia coli E24377A] gi|188574267|ref|YP_001919382.1| resolvase [Escherichia coli 53638] gi|157076624|gb|ABV16335.1| resolvase [Escherichia coli E24377A] gi|188501442|gb|ACD54576.1| resolvase [Escherichia coli 53638] Length = 277 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 204 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 247 >gi|190576855|ref|YP_001966187.1| ResA resolvase [Klebsiella pneumoniae] gi|218561692|ref|YP_002394604.1| Resolvase (Protein D) [Escherichia fergusonii ATCC 35469] gi|110264439|gb|ABG56802.1| ResA resolvase [Klebsiella pneumoniae] gi|218350206|emb|CAQ86969.1| Resolvase (Protein D) [Escherichia fergusonii] gi|323958891|gb|EGB54567.1| phage integrase [Escherichia coli H489] Length = 258 Score = 76.1 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 187 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 230 >gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR] gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR] Length = 282 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HTLRH FATHLL G D+ IQ +LGH+ + TT IY ++ R M++ + P Sbjct: 220 VSIHTLRHCFATHLLEAGTDILHIQQLLGHTSIHTTCIYLHL---RRMDVLNVKSP 272 >gi|157165114|ref|YP_001466903.1| hydrogenase expression/formation protein [Campylobacter concisus 13826] gi|112800281|gb|EAT97625.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 354 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342 >gi|26246822|ref|NP_752862.1| integrase for prophage [Escherichia coli CFT073] gi|26107222|gb|AAN79405.1|AE016758_9 Integrase for prophage [Escherichia coli CFT073] Length = 343 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 364 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH++AT L+ G D+ ++ +LGH L TTQIY V + E ++ Sbjct: 306 TITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTTQIYAKVIDDKKKEAANR 359 >gi|187730006|ref|YP_001878775.1| resolvase [Shigella boydii CDC 3083-94] gi|187426750|gb|ACD06027.1| resolvase [Shigella boydii CDC 3083-94] Length = 299 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 223 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 266 >gi|153816821|ref|ZP_01969488.1| integrase [Vibrio cholerae NCTC 8457] gi|126512624|gb|EAZ75218.1| integrase [Vibrio cholerae NCTC 8457] Length = 343 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ +LGH+ +S T Y++ + + + Sbjct: 288 HVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSHFAPDHLSDAITR 337 >gi|147671754|ref|YP_001215915.1| integrase [Vibrio cholerae O395] gi|262167833|ref|ZP_06035534.1| integrase [Vibrio cholerae RC27] gi|146314137|gb|ABQ18677.1| integrase [Vibrio cholerae O395] gi|227014823|gb|ACP11032.1| integrase [Vibrio cholerae O395] gi|262023741|gb|EEY42441.1| integrase [Vibrio cholerae RC27] Length = 343 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ +LGH+ +S T Y++ + + + Sbjct: 288 HVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSHFAPDHLSDAITR 337 >gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 280 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 34/47 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K + Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTL 267 >gi|218130594|ref|ZP_03459398.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697] gi|217986938|gb|EEC53269.1| hypothetical protein BACEGG_02183 [Bacteroides eggerthii DSM 20697] Length = 88 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 38/54 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + + H Sbjct: 29 SFHVARHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLH 82 >gi|209395650|ref|YP_002268540.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|209162421|gb|ACI39853.1| resolvase [Escherichia coli O157:H7 str. EC4115] Length = 271 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241 >gi|15645299|ref|NP_207469.1| integrase/recombinase (xerC) [Helicobacter pylori 26695] gi|2313795|gb|AAD07734.1| integrase/recombinase (xerC) [Helicobacter pylori 26695] Length = 362 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 308 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 355 >gi|157164045|ref|YP_001467592.1| transport protein [Campylobacter concisus 13826] gi|112801157|gb|EAT98501.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 353 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 297 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 342 >gi|138557|sp|P06723|VINT_BP186 RecName: Full=Integrase gi|3337277|gb|AAC34175.1| Int [Enterobacteria phage 186] Length = 336 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + + Sbjct: 277 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVK 325 >gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 292 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG ++R++Q +LG+ L+ Y +N+ ++ +Y +HP Sbjct: 238 TFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTYYEIINNDKINIVYKNSHPRA 292 >gi|227539443|ref|ZP_03969492.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|227240756|gb|EEI90771.1| integrase [Sphingobacterium spiritivorum ATCC 33300] Length = 416 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVAPKFK 406 Query: 62 Q 62 + Sbjct: 407 E 407 >gi|157160328|ref|YP_001457646.1| phage integrase family site specific recombinase [Escherichia coli HS] gi|157066008|gb|ABV05263.1| site-specific recombinase, phage integrase family [Escherichia coli HS] gi|323938204|gb|EGB34464.1| phage integrase [Escherichia coli E1520] Length = 343 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|149916988|ref|ZP_01905489.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149822266|gb|EDM81657.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 421 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 24/43 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 H LRH+FA+H + G +R +Q LGH+ + T Y ++ Sbjct: 319 VHPHMLRHTFASHAVMRGVPMRVVQEWLGHASIEMTMRYAHLA 361 >gi|238788398|ref|ZP_04632192.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238723644|gb|EEQ15290.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGH+ + T Y + + + + Sbjct: 280 HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHFAPEHLDDAIK 328 >gi|324112716|gb|EGC06692.1| phage integrase [Escherichia fergusonii B253] Length = 343 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|315586648|gb|ADU41029.1| tyrosine recombinase XerC [Helicobacter pylori 35A] Length = 355 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41] gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FA HL G L IQ +LGH +TQ+Y + + ++YD Sbjct: 224 FRVTPHMLRHTFAAHLAERGMPLECIQQLLGHETTHSTQLYARLYNHARKQMYDN 278 >gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A] gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis] gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis] gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A] Length = 377 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT +L+ G DL + +LGH+ + TQ+Y + +++ + + Sbjct: 320 TFHTARHTFATMMLTLGADLYTTSKLLGHADVKMTQVYAKIINQKKDDAVN 370 >gi|260600009|ref|YP_003212747.1| Resolvase [Cronobacter turicensis z3032] gi|260219356|emb|CBA34708.1| Resolvase [Cronobacter turicensis z3032] Length = 284 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 214 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSVSSTEVYTKV 257 >gi|126660459|ref|ZP_01731568.1| Tn554, transposase A [Cyanothece sp. CCY0110] gi|126618272|gb|EAZ89032.1| Tn554, transposase A [Cyanothece sp. CCY0110] Length = 368 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + T H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + + + Y + Sbjct: 303 IEVTPHLLRHTHATELIRAGWDMSYVQKRLGHADIQTTVNTYIHLSDEDLSKTYQKY 359 >gi|119952366|ref|YP_949908.1| phage integrase family protein [Arthrobacter aurescens TC1] gi|119951496|gb|ABM10406.1| phage integrase family domain protein [Arthrobacter aurescens TC1] Length = 333 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L + G D+++IQ +LGH L+TT Y +V S + ++ + + Sbjct: 268 TPHVLRHYCASSLYAAGMDIKAIQELLGHQWLATTSGYLHVRSDHIERAWNSASDRVEAR 327 >gi|283488406|ref|YP_003368522.1| resolvase [Citrobacter rodentium ICC168] gi|282952113|emb|CBG91843.1| resolvase [Citrobacter rodentium ICC168] Length = 274 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241 >gi|253774150|ref|YP_003036981.1| integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|297520846|ref|ZP_06939232.1| integrase family protein [Escherichia coli OP50] gi|242376639|emb|CAQ31349.1| ybl28 [Escherichia coli BL21(DE3)] gi|253325194|gb|ACT29796.1| integrase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|332342181|gb|AEE55515.1| phage integrase [Escherichia coli UMNK88] Length = 338 Score = 76.1 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|194435212|ref|ZP_03067439.1| resolvase [Shigella dysenteriae 1012] gi|194416535|gb|EDX32677.1| resolvase [Shigella dysenteriae 1012] Length = 274 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241 >gi|168758775|ref|ZP_02783782.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|168771432|ref|ZP_02796439.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189354463|gb|EDU72882.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189359798|gb|EDU78217.1| resolvase [Escherichia coli O157:H7 str. EC4486] Length = 271 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241 >gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 317 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ ++Q LGH L+ T Y +++ + + E Sbjct: 245 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAEA 291 >gi|226349698|ref|YP_002776812.1| putative tyrosine recombinase [Rhodococcus opacus B4] gi|226245613|dbj|BAH55960.1| putative tyrosine recombinase [Rhodococcus opacus B4] Length = 390 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH FA+++L GG + +Q +LGH+ +S++Q+Y + +R+ ++ Sbjct: 322 AVHPHALRHGFASNVLDAGGSIDEVQELLGHASISSSQVYVHPAPERLRAAVER 375 >gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 280 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 34/47 (72%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRHSFA+HL +G D++ IQ++LGH +T++Y +V++K + Sbjct: 221 VSTHCLRHSFASHLFESGCDVKYIQALLGHRDPKSTEVYLHVSNKTL 267 >gi|300778066|ref|ZP_07087924.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300503576|gb|EFK34716.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406 Query: 62 QKDK 65 ++ Sbjct: 407 AMEE 410 >gi|329996758|ref|ZP_08302555.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|328539320|gb|EGF65345.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 241 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 170 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 213 >gi|315932644|gb|EFV11575.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|294664393|ref|ZP_06729752.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605835|gb|EFF49127.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 405 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+ L+ G DL +++ +LGH+ + T Y ++ ++ E + Sbjct: 355 HDLRHSFASKLVMRGVDLNTVRELLGHADIKMTLRYAHLAPDKLAEAVAK 404 >gi|283954436|ref|ZP_06371956.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 414] gi|283794053|gb|EFC32802.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 414] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|210134881|ref|YP_002301320.1| integrase-recombinase protein [Helicobacter pylori P12] gi|210132849|gb|ACJ07840.1| integrase-recombinase protein [Helicobacter pylori P12] Length = 356 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349 >gi|205356361|ref|ZP_03223126.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345746|gb|EDZ32384.1| DNA recombinase [Campylobacter jejuni subsp. jejuni CG8421] gi|315058313|gb|ADT72642.1| Integrase-recombinase protein XERCD family [Campylobacter jejuni subsp. jejuni S3] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|157415130|ref|YP_001482386.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. jejuni 81116] gi|157386094|gb|ABV52409.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 81116] gi|307747772|gb|ADN91042.1| Site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni M1] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|153951127|ref|YP_001398120.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. doylei 269.97] gi|152938573|gb|ABS43314.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. doylei 269.97] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|57237704|ref|YP_178952.1| phage integrase family site specific recombinase [Campylobacter jejuni RM1221] gi|57166508|gb|AAW35287.1| site-specific recombinase, phage integrase family [Campylobacter jejuni RM1221] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|86152145|ref|ZP_01070357.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 260.94] gi|86153297|ref|ZP_01071501.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612957|ref|YP_001000547.1| phage integrase family site specific recombinase [Campylobacter jejuni subsp. jejuni 81-176] gi|315124372|ref|YP_004066376.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840930|gb|EAQ58180.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 260.94] gi|85843023|gb|EAQ60234.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249540|gb|EAQ72500.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 81-176] gi|315018094|gb|ADT66187.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|86150256|ref|ZP_01068483.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597569|ref|ZP_01100803.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 84-25] gi|218562491|ref|YP_002344270.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839372|gb|EAQ56634.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190161|gb|EAQ94136.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 84-25] gi|112360197|emb|CAL34991.1| DNA recombinase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926106|gb|ADC28458.1| DNA recombinase [Campylobacter jejuni subsp. jejuni IA3902] gi|315926491|gb|EFV05873.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|284931854|gb|ADC31721.1| truncated tyrosine recombinase IntI2 [Escherichia coli] gi|284931857|gb|ADC31723.1| tyrosine recombinase IntI2 [Escherichia coli] gi|284931868|gb|ADC31728.1| truncated tyrosine recombinase IntI2 [Escherichia coli] Length = 58 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 31/41 (75%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 RHSFATHLL G D+R++Q +LGH+ + TTQIYT+V + Sbjct: 1 FRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQH 41 >gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] Length = 281 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+HL+ G L+++Q +LGHS + Y +++ + E + Sbjct: 222 FHDLRHTFASHLIMRGAGLKTVQELLGHSDIKMNMRYAHLSPGHLQESVN 271 >gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] Length = 386 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379 >gi|256021081|ref|ZP_05434946.1| bacteriophage integrase [Shigella sp. D9] gi|332282306|ref|ZP_08394719.1| site-specific recombinase [Shigella sp. D9] gi|332104658|gb|EGJ08004.1| site-specific recombinase [Shigella sp. D9] Length = 343 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1] gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1] gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 386 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379 >gi|332885866|gb|EGK06112.1| hypothetical protein HMPREF9456_02376 [Dysgonomonas mossii DSM 22836] Length = 409 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + ++ +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMSRHSFASLITLEAGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDKY 398 >gi|332346514|gb|AEE59847.1| putative site-specific recombinase [Escherichia coli UMNK88] Length = 229 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4] gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4] Length = 386 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379 >gi|300946488|ref|ZP_07160757.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] gi|300453832|gb|EFK17452.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] Length = 246 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 170 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 213 >gi|290474039|ref|YP_003466913.1| integrase [Xenorhabdus bovienii SS-2004] gi|289173346|emb|CBJ80123.1| Integrase [Xenorhabdus bovienii SS-2004] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 30/50 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++H +RH+FA+H + +GG++ +Q ILGH+ + T Y + + + Sbjct: 275 SSHVMRHTFASHFMMSGGNIIVLQRILGHTDIKMTMRYAHFAPDHLNDAL 324 >gi|257876357|ref|ZP_05656010.1| phage integrase [Enterococcus casseliflavus EC20] gi|294619900|ref|ZP_06699276.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|257810523|gb|EEV39343.1| phage integrase [Enterococcus casseliflavus EC20] gi|291593837|gb|EFF25335.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] Length = 380 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRF 374 >gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] Length = 389 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H RH+FA +L G D+ ++ +LGH LSTTQIY V K Sbjct: 331 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDKNKQNAV 382 >gi|283957150|ref|ZP_06374614.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] gi|283791326|gb|EFC30131.1| site-specific recombinase, phage integrase family [Campylobacter jejuni subsp. jejuni 1336] Length = 354 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLILVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|313126748|ref|YP_004037018.1| site-specific recombinase xerd [Halogeometricum borinquense DSM 11551] gi|312293113|gb|ADQ67573.1| site-specific recombinase XerD [Halogeometricum borinquense DSM 11551] Length = 311 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T HTLRHSFA L NG D+R++Q ++GH+ + TTQ+Y ++ + Q PS+ Sbjct: 251 KITGHTLRHSFAVAALKNGMDVRTLQKLMGHADIETTQMYLDLADDDVKTKARQFGPSL 309 >gi|326385291|ref|ZP_08206951.1| phage family integrase/recombinase protein [Gordonia neofelifaecis NRRL B-59395] gi|326195982|gb|EGD53196.1| phage family integrase/recombinase protein [Gordonia neofelifaecis NRRL B-59395] Length = 269 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T HTLRH FA+ D+R++Q +LGH+ ++TTQIYT + + Sbjct: 210 TTHTLRHRFASAAYRADRDIRAVQELLGHASVATTQIYTALPDDSLRRA 258 >gi|227552270|ref|ZP_03982319.1| bacteriophage integrase [Enterococcus faecium TX1330] gi|257895152|ref|ZP_05674805.1| phage integrase [Enterococcus faecium Com12] gi|257897764|ref|ZP_05677417.1| phage integrase [Enterococcus faecium Com15] gi|261208892|ref|ZP_05923329.1| phage integrase [Enterococcus faecium TC 6] gi|289567444|ref|ZP_06447804.1| phage integrase [Enterococcus faecium D344SRF] gi|293378034|ref|ZP_06624211.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium PC4.1] gi|293569081|ref|ZP_06680393.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1071] gi|294616782|ref|ZP_06696529.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|227178600|gb|EEI59572.1| bacteriophage integrase [Enterococcus faecium TX1330] gi|257831717|gb|EEV58138.1| phage integrase [Enterococcus faecium Com12] gi|257835676|gb|EEV60750.1| phage integrase [Enterococcus faecium Com15] gi|260077394|gb|EEW65114.1| phage integrase [Enterococcus faecium TC 6] gi|289160757|gb|EFD08697.1| phage integrase [Enterococcus faecium D344SRF] gi|291588262|gb|EFF20098.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1071] gi|291590354|gb|EFF22116.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|292643352|gb|EFF61485.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium PC4.1] Length = 380 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRF 374 >gi|193071780|ref|ZP_03052675.1| Int2 [Escherichia coli E110019] gi|192954916|gb|EDV85424.1| Int2 [Escherichia coli E110019] Length = 246 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 170 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 213 >gi|325857603|ref|ZP_08172539.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483109|gb|EGC86091.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 435 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ ++ K Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLSSK 411 Query: 64 DKKN 67 +KKN Sbjct: 412 EKKN 415 >gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] Length = 314 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 2/59 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +AH LRH+ AT + +G D+R ++ ILGH L TT+IYT++++++M + D +P Sbjct: 245 SAHKLRHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAAD-ANPLSK 302 >gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 368 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LL++G D+ +++ ILGH+ + TT Y V K E + Sbjct: 311 ITFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVN 362 >gi|257870780|ref|ZP_05650433.1| phage integrase [Enterococcus gallinarum EG2] gi|257804944|gb|EEV33766.1| phage integrase [Enterococcus gallinarum EG2] Length = 380 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSIKKTGDRF 374 >gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] Length = 416 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKVVDEKKEKA 406 >gi|257453044|ref|ZP_05618343.1| phage integrase family site specific recombinase [Fusobacterium sp. 3_1_5R] gi|317059582|ref|ZP_07924067.1| phage integrase [Fusobacterium sp. 3_1_5R] gi|313685258|gb|EFS22093.1| phage integrase [Fusobacterium sp. 3_1_5R] Length = 371 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52 + H++RHSFAT L ++++Q ++GHS ++TT IYT+V + E Sbjct: 315 SFHSIRHSFATRLFEKNVQIKTVQELMGHSEIATTMDIYTHVMPQTKEEA 364 >gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] Length = 293 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 40/57 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + H LRH+FAT +L++ +L +++ +LGH L+TT++YT+ + + ++Y+Q HP Sbjct: 237 SPHVLRHTFATSMLNHQAELEAVKELLGHESLTTTEVYTHTTFEELKQVYEQAHPRA 293 >gi|332829974|gb|EGK02602.1| hypothetical protein HMPREF9455_00852 [Dysgonomonas gadei ATCC BAA-286] Length = 409 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RHSFA+ + L G + +I +LGHS +STTQIY V K++ E D+ Sbjct: 343 PMTYHSGRHSFASLITLEEGVPIETISRMLGHSNISTTQIYARVTPKKLFEDMDK 397 >gi|324009719|gb|EGB78938.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311 >gi|323974160|gb|EGB69293.1| phage integrase [Escherichia coli TW10509] Length = 274 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 198 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 241 >gi|323185236|gb|EFZ70601.1| integrase [Escherichia coli 1357] Length = 326 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311 >gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 409 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58 T HTLRHS+ATHL + DL Q LGH+ + TQ Y + R+ E + Sbjct: 336 KVTFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYAKMTENRLREGSAALEAAFK 395 Query: 59 SITQKDKKN 67 + QK KKN Sbjct: 396 TNGQKKKKN 404 >gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] Length = 297 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T T+R+SFA HL+ NG D++ IQ ILG++ + Q Y V+ +++ Y + HP Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPRA 297 >gi|50121562|ref|YP_050729.1| phage integrase [Pectobacterium atrosepticum SCRI1043] gi|49612088|emb|CAG75538.1| phage integrase [Pectobacterium atrosepticum SCRI1043] Length = 328 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H RH+FATH + NGG++ ++Q ILGHS + T +Y + + + Sbjct: 271 HVFRHTFATHFMMNGGNIITLQRILGHSTIQQTMVYAHFAPDFLQDAV 318 >gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] Length = 297 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T T+R+SFA HL+ NG D++ IQ ILG++ + Q Y V+ +++ Y + HP Sbjct: 239 EVTPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPRA 297 >gi|300817091|ref|ZP_07097310.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300530443|gb|EFK51505.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] Length = 392 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 330 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 384 >gi|213051670|ref|ZP_03344548.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425642|ref|ZP_03358392.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580194|ref|ZP_03362020.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213646693|ref|ZP_03376746.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 326 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311 >gi|296103209|ref|YP_003613355.1| putative bacteriophage integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057668|gb|ADF62406.1| putative bacteriophage integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 349 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|189402582|ref|ZP_02783408.2| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189354779|gb|EDU73198.1| resolvase [Escherichia coli O157:H7 str. EC4401] Length = 229 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|318605374|emb|CBY26872.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 341 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +Q ILGHS + T Y++ + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSHFAPDHLEAAV 332 >gi|262042240|ref|ZP_06015407.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040411|gb|EEW41515.1| resolvase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 259 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4] gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 383 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT +L+ D+ + +LGH +STTQIY + ++ E ++ Sbjct: 324 VTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKIIDQKKDEAVNR 376 >gi|191166265|ref|ZP_03028098.1| resolvase [Escherichia coli B7A] gi|190903692|gb|EDV63408.1| resolvase [Escherichia coli B7A] Length = 259 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|169823615|ref|YP_001691118.1| putative integrase [Finegoldia magna ATCC 29328] gi|167832235|dbj|BAG09150.1| putative integrase [Finegoldia magna ATCC 29328] Length = 359 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH+ AT + +G DLRS+Q ILGH+ TT+IYT+V K + + Sbjct: 293 STHKLRHTSATLMYQHGNVDLRSLQQILGHASSKTTEIYTHVYDKNLKRAVN 344 >gi|308062001|gb|ADO03889.1| integrase-recombinase protein [Helicobacter pylori Cuz20] Length = 355 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|307323750|ref|ZP_07602960.1| integrase family protein [Streptomyces violaceusniger Tu 4113] gi|306891239|gb|EFN22215.1| integrase family protein [Streptomyces violaceusniger Tu 4113] Length = 359 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L +NG DL +IQ +LGHS ++TT Y +V R+ + + Sbjct: 292 KLTPHVLRHFCASQLYANGLDLLAIQEVLGHSWIATTMRYVHVQQTRVEDAW 343 >gi|289810498|ref|ZP_06541127.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 275 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 206 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 260 >gi|86142418|ref|ZP_01060928.1| probable integrase [Leeuwenhoekiella blandensis MED217] gi|85831170|gb|EAQ49627.1| probable integrase [Leeuwenhoekiella blandensis MED217] Length = 195 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 30/44 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T H+LRHS+ATHLL G D+ S++ +LGH+ + TT Y +V Sbjct: 135 VTTHSLRHSYATHLLEMGLDIMSVKDLLGHADIQTTLTYLHVAQ 178 >gi|317180442|dbj|BAJ58228.1| integrase-recombinase protein [Helicobacter pylori F32] Length = 355 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|308063535|gb|ADO05422.1| integrase-recombinase protein [Helicobacter pylori Sat464] Length = 353 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|108563083|ref|YP_627399.1| integrase-recombinase protein [Helicobacter pylori HPAG1] gi|107836856|gb|ABF84725.1| integrase-recombinase protein [Helicobacter pylori HPAG1] Length = 356 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349 >gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602] gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T +Y + + + Sbjct: 271 HVLRHTFATHFMMNGGNIITLQRILGHSTVQQTMVYAHFAPDFLQDAV 318 >gi|238755955|ref|ZP_04617281.1| Resolvase [Yersinia ruckeri ATCC 29473] gi|238705807|gb|EEP98198.1| Resolvase [Yersinia ruckeri ATCC 29473] Length = 259 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HLL G L+ +QS++GH L +T++YT + Sbjct: 187 VPVTPHTFRHSYAMHLLYAGVPLKVLQSLMGHKSLKSTEVYTRI 230 >gi|300820004|ref|ZP_07100184.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300527453|gb|EFK48515.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|321271395|gb|ADW79485.1| putative site-specific recombinase [Escherichia coli] gi|323133074|gb|ADX20502.1| resolvase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323959152|gb|EGB54818.1| phage integrase [Escherichia coli H489] Length = 261 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|294919371|ref|XP_002778525.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239887015|gb|EER10320.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 122 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94 >gi|332161996|ref|YP_004298573.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666226|gb|ADZ42870.1| Integrase family protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 314 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA+H + GG++ +Q ILGHS + T Y++ + + +P Sbjct: 242 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI-HFNPLAR 296 >gi|154175082|ref|YP_001408312.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92] gi|112803167|gb|EAU00511.1| metallo-beta-lactamase family protein [Campylobacter curvus 525.92] Length = 353 Score = 75.7 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|300907179|ref|ZP_07124842.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301303606|ref|ZP_07209728.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|300401054|gb|EFJ84592.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300841105|gb|EFK68865.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315257836|gb|EFU37804.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] Length = 288 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 218 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 272 >gi|261251522|ref|ZP_05944096.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891] gi|260938395|gb|EEX94383.1| probable bacteriophage integrase [Vibrio orientalis CIP 102891] Length = 347 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RH+FA+ + GG++ +Q ILGHS + T Y++ + +++ Sbjct: 290 HVFRHTFASRFMEAGGNILVLQKILGHSDIKMTMRYSHFSPDHLIQA 336 >gi|86145355|ref|ZP_01063686.1| hypothetical protein MED222_05540 [Vibrio sp. MED222] gi|85836932|gb|EAQ55052.1| hypothetical protein MED222_05540 [Vibrio sp. MED222] Length = 160 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 34/50 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+LRH FATHLL G DLRS+Q++LGH+ L+TT YT + + + Sbjct: 93 ASPHSLRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRMTQIKQRDA 142 >gi|57167914|ref|ZP_00367054.1| DNA recombinase Cj0863c [Campylobacter coli RM2228] gi|57021036|gb|EAL57700.1| DNA recombinase Cj0863c [Campylobacter coli RM2228] Length = 354 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 342 >gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 386 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 328 NLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379 >gi|323974510|gb|EGB69637.1| phage integrase [Escherichia coli TW10509] Length = 261 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|317012487|gb|ADU83095.1| integrase-recombinase protein [Helicobacter pylori Lithuania75] Length = 363 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 309 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEEA 356 >gi|315180749|gb|ADT87663.1| Integrase [Vibrio furnissii NCTC 11218] Length = 352 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH LRH+FA++ + NGG++ ++Q ILGH+ + T Y ++ + ++ + Sbjct: 284 AHVLRHTFASYYMMNGGNIIALQRILGHADIKQTMRYAHLAPDHLEDVVSK 334 >gi|325955991|ref|YP_004286601.1| integrase family protein [Lactobacillus acidophilus 30SC] gi|325332556|gb|ADZ06464.1| integrase family protein [Lactobacillus acidophilus 30SC] Length = 410 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + + HTLRH+F T L+ +G +++ IQ LGHS + TT IY +V + + + + Sbjct: 347 NFSCHTLRHTFTTRLIESGMNIKVIQEALGHSDIQTTLDIYADVTKELKQQQFTKF 402 >gi|187922278|ref|YP_001893920.1| integrase family protein [Burkholderia phytofirmans PsJN] gi|187713472|gb|ACD14696.1| integrase family protein [Burkholderia phytofirmans PsJN] Length = 405 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ S+Q LGH L+ T Y +++ + E Sbjct: 277 HVLRHTFASHFMMNGGNILSLQRALGHHSLTMTMRYAHLSPDHLAE 322 >gi|261839501|gb|ACX99266.1| phage integrase family protein [Helicobacter pylori 52] Length = 355 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|217033697|ref|ZP_03439124.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10] gi|216943886|gb|EEC23323.1| hypothetical protein HP9810_5g39 [Helicobacter pylori 98-10] Length = 370 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|188527478|ref|YP_001910165.1| integrase-recombinase protein [Helicobacter pylori Shi470] gi|188143718|gb|ACD48135.1| integrase-recombinase protein [Helicobacter pylori Shi470] Length = 356 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 302 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 349 >gi|9507462|ref|NP_052469.1| resolvase [Plasmid ColIb-P9] gi|32470177|ref|NP_863401.1| hypothetical protein R64_p046 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|194447254|ref|YP_002043869.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300904883|ref|ZP_07122706.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301305699|ref|ZP_07211787.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|4512459|dbj|BAA75108.1| resolvase [Plasmid ColIb-P9] gi|20521545|dbj|BAB91609.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|70610211|gb|AAZ05358.1| resolvase [Salmonella enterica] gi|194405558|gb|ACF65779.1| resolvase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|300403216|gb|EFJ86754.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300839039|gb|EFK66799.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315253185|gb|EFU33153.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] gi|321271591|gb|ADW79679.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Kentucky] gi|321271691|gb|ADW79778.1| putative site-specific recombinase [Escherichia coli] Length = 259 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|317505107|ref|ZP_07963052.1| integrase [Prevotella salivae DSM 15606] gi|315663771|gb|EFV03493.1| integrase [Prevotella salivae DSM 15606] Length = 391 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 33/48 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT +L+ G + S+ +LGHS ++TTQ+Y + +K++ Sbjct: 318 NLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 365 >gi|301027042|ref|ZP_07190421.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299879442|gb|EFI87653.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 147 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 76 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 119 >gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] Length = 429 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 30/45 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H RH+FAT LS G D+ ++ +LGHS+++TTQ+Y V + Sbjct: 359 ITFHCFRHTFATLQLSLGTDIYTVSKMLGHSKVTTTQVYAKVVDE 403 >gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41] gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 632 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S H RH+FAT LL+ G DL I LGH +L TT+IY + + +++ +Y + Sbjct: 576 SLHPHRFRHTFATELLTKGADLSFIADELGHKQLQTTKIYACLPNWKLISLYRKF 630 >gi|160933881|ref|ZP_02081268.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753] gi|156866554|gb|EDO59926.1| hypothetical protein CLOLEP_02743 [Clostridium leptum DSM 753] Length = 419 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH+F T L +G D+ + + +GHS + TT IYT+++ + + Sbjct: 349 ITPHWLRHTFCTLLYLSGTDVLTAKEQMGHSDIKTTLGIYTHLDKEHKRNAVSK 402 >gi|83404870|ref|YP_424884.1| resolvase [Escherichia coli] gi|299836151|ref|YP_003717720.1| putative resolvase [Escherichia coli ETEC 1392/75] gi|46949067|gb|AAT07421.1| ResA [Escherichia coli] gi|83308595|emb|CAI79580.1| resolvase [Escherichia coli] gi|297374500|emb|CBL93575.1| putative resolvase [Escherichia coli ETEC 1392/75] Length = 261 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|242310752|ref|ZP_04809907.1| integrase-recombinase protein xercd family protein [Helicobacter pullorum MIT 98-5489] gi|239523150|gb|EEQ63016.1| integrase-recombinase protein xercd family protein [Helicobacter pullorum MIT 98-5489] Length = 353 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 30/46 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRHSFAT L DL +Q LGH+ L T++IYT+ + +++ Sbjct: 302 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYTHFDKQKLK 347 >gi|195940121|ref|ZP_03085503.1| resolvase [Escherichia coli O157:H7 str. EC4024] Length = 260 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13] gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 338 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61 T HTLR++FA L +GGD+ ++ +LGHS + TTQ Y ++ + + + Y + P Sbjct: 273 ITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDIRTTQSAYLDLTTSDIRKNYLKFSPLEN 332 Query: 62 QKDK 65 K K Sbjct: 333 MKKK 336 >gi|148265141|ref|YP_001231847.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398641|gb|ABQ27274.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 290 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S HTLRH +ATHLL G +LR IQ LGHS + TT +Y ++ K Sbjct: 229 SVHIHTLRH-YATHLLEEGVNLRVIQRYLGHSSIETTMVYLHLTRK 273 >gi|84393354|ref|ZP_00992114.1| Integrase [Vibrio splendidus 12B01] gi|84376070|gb|EAP92958.1| Integrase [Vibrio splendidus 12B01] Length = 340 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH LRH+FA++ + NGG++ ++Q ILGHS + T Y ++ + ++ + Sbjct: 284 AHVLRHTFASYYMMNGGNIIALQRILGHSDIKQTMRYAHLAPDHLEDVVTK 334 >gi|97954418|emb|CAJ43593.1| integrase [Enterobacteria phage PhiD145] Length = 331 Score = 75.3 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T Y + + + Sbjct: 271 HVLRHTFATHFIMNGGNIITLQRILGHSHIQQTMTYAHFAPDFLQDAV 318 >gi|330860733|emb|CBX71025.1| integrase [Yersinia enterocolitica W22703] Length = 332 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA+H + GG++ +Q ILGHS + T Y++ + + +P Sbjct: 260 HVLRHTFASHFMMAGGNIIVLQRILGHSDIRVTMRYSHFAPDHLEDAI-HFNPLAR 314 >gi|317181986|dbj|BAJ59770.1| integrase-recombinase protein [Helicobacter pylori F57] Length = 355 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|317178966|dbj|BAJ56754.1| integrase-recombinase protein [Helicobacter pylori F30] Length = 355 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|315297106|gb|EFU56386.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] Length = 127 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 56 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 99 >gi|261838090|gb|ACX97856.1| integrase/recombinase [Helicobacter pylori 51] Length = 355 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|70607234|ref|YP_256104.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] gi|68567882|gb|AAY80811.1| integrase/recombinase XerD [Sulfolobus acidocaldarius DSM 639] Length = 287 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT + G L +Q ILGH + TQ+YT++ + + + Y T Sbjct: 234 PHILRHTFATEAIRKGIPLPVVQKILGHKDIRVTQVYTHLVIEDVEKAYKNT 285 >gi|260590923|ref|ZP_05856381.1| integrase [Prevotella veroralis F0319] gi|260536788|gb|EEX19405.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDRF 398 >gi|71279488|ref|YP_270656.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71145228|gb|AAZ25701.1| site-specific recombinase, phage integrase family, truncated [Colwellia psychrerythraea 34H] Length = 74 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 27/46 (58%), Positives = 33/46 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 TAHT RHSFAT LL NG D+ ++Q +LGH+ L TTQIYT V + Sbjct: 18 VTAHTFRHSFATQLLLNGADISTVQELLGHNDLRTTQIYTYVIGQH 63 >gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 327 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T +Y + + + + Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAV 316 >gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] Length = 327 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG++ ++Q ILGHS + T +Y + + + + Sbjct: 269 HVLRHTFATHFMINGGNIITLQRILGHSTIQQTMLYAHFSPDYLQDAV 316 >gi|323344112|ref|ZP_08084338.1| tyrosine recombinase [Prevotella oralis ATCC 33269] gi|323094841|gb|EFZ37416.1| tyrosine recombinase [Prevotella oralis ATCC 33269] Length = 345 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+ RHS ATHLL G ++ I+ LGHS + TT+ Y ++S++ + + Sbjct: 264 SPHSFRHSKATHLLQAGMNIIYIRDFLGHSSVKTTETYVRMDSEQKRKALEAA 316 >gi|163801694|ref|ZP_02195592.1| Integrase [Vibrio sp. AND4] gi|159174611|gb|EDP59413.1| Integrase [Vibrio sp. AND4] Length = 343 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFA+H + NG ++ ++ ILGHS +S T Y + + + Sbjct: 288 HVLRHSFASHFMMNGDNILVLRDILGHSDISMTMRYAHFAPDHLSDAI 335 >gi|330907861|gb|EGH36384.1| resolvase [Escherichia coli AA86] Length = 259 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|300871067|ref|YP_003785939.1| bacteriophage-associated integrase XerDC family protein [Brachyspira pilosicoli 95/1000] gi|300688767|gb|ADK31438.1| bacteriophage-associated: putative integrase XerDC family protein [Brachyspira pilosicoli 95/1000] Length = 392 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T H+LR FAT + +G D+ I +LGH ++TT Y V + + E Q HP Sbjct: 275 IKVTCHSLRRGFATDMAESGTDIYVISKMLGHQNINTTVSRYIYVMASMIKEAM-QNHPF 333 Query: 60 ITQKDKKN 67 ++K+N Sbjct: 334 AKNREKQN 341 >gi|154148966|ref|YP_001406688.1| phage integrase family site specific recombinase [Campylobacter hominis ATCC BAA-381] gi|153804975|gb|ABS51982.1| site-specific recombinase, phage integrase family [Campylobacter hominis ATCC BAA-381] Length = 352 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L T++IYT+ +S+++ Sbjct: 296 AHMLRHTFATMLYKKQKDLVLVQEALGHASLDTSRIYTHFDSQKLR 341 >gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 351 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +Q ILGHS + T Y++ + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSHFAPDHLEAAV 332 >gi|256023557|ref|ZP_05437422.1| integrase family protein [Escherichia sp. 4_1_40B] Length = 358 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|167623237|ref|YP_001673531.1| integrase family protein [Shewanella halifaxensis HAW-EB4] gi|167353259|gb|ABZ75872.1| integrase family protein [Shewanella halifaxensis HAW-EB4] Length = 341 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + + Sbjct: 284 HILRHTFASHFMMNGGNILVLKQILGHSDIKDTMRYAHFAPDHLDDAITK 333 >gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 310 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + +AHT RH+FA L NGGD+ S+Q ILGHS++ T Y + + E ++ +P Sbjct: 246 VRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYVALWGTALKEQNEKYNPLS 305 Query: 61 T 61 Sbjct: 306 K 306 >gi|260642635|ref|ZP_05416696.2| integrase [Bacteroides finegoldii DSM 17565] gi|260621236|gb|EEX44107.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+FAT LLS G + S+ +LGH+ + TTQIY + +K++ + Q Sbjct: 341 SYHLARHTFATMLLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEQDMMQ 392 >gi|317055535|ref|YP_004104002.1| integrase family protein [Ruminococcus albus 7] gi|317057168|ref|YP_004105635.1| integrase family protein [Ruminococcus albus 7] gi|317133858|ref|YP_004089769.1| integrase family protein [Ruminococcus albus 7] gi|319788794|ref|YP_004090109.1| integrase family protein [Ruminococcus albus 7] gi|315447804|gb|ADU21368.1| integrase family protein [Ruminococcus albus 7] gi|315449437|gb|ADU23001.1| integrase family protein [Ruminococcus albus 7] gi|315450320|gb|ADU23883.1| integrase family protein [Ruminococcus albus 7] gi|315450661|gb|ADU24223.1| integrase family protein [Ruminococcus albus 7] Length = 334 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 34/53 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 S H LRHS ATHL+ NG ++ +++ LGH ++TTQIY + N + + + + Sbjct: 252 SVYPHRLRHSKATHLVDNGVNIYNVRDFLGHESVATTQIYLSTNPEVIRKAIE 304 >gi|288801868|ref|ZP_06407310.1| integrase [Prevotella melaninogenica D18] gi|288335910|gb|EFC74343.1| integrase [Prevotella melaninogenica D18] Length = 431 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ + K Sbjct: 348 SYHVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDRLIAKQSAK 407 Query: 64 DKK 66 DK+ Sbjct: 408 DKE 410 >gi|238025621|ref|YP_002909853.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880286|gb|ACR32617.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 586 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FA H L G D+R +Q++LGH+ L+TT Y ++ R + D Sbjct: 510 STHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVDAF 562 >gi|317052534|ref|YP_004113650.1| integrase family protein [Desulfurispirillum indicum S5] gi|316947618|gb|ADU67094.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 29/43 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + ++LRHS+ATH+L G DL +Q ILGH + TT YT++ Sbjct: 235 ISCYSLRHSYATHMLEAGVDLLELQQILGHVSILTTARYTHLT 277 >gi|282858083|ref|ZP_06267278.1| site-specific recombinase, phage integrase family [Pyramidobacter piscolens W5455] gi|282584005|gb|EFB89378.1| site-specific recombinase, phage integrase family [Pyramidobacter piscolens W5455] Length = 338 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH+F ++LLSNG + +Q +LGH+ +STT IY +V + Sbjct: 279 HFHTLRHTFTSNLLSNGAQPKDVQELLGHADVSTTMNIYAHVTKEAKR 326 >gi|296088960|emb|CBI38526.3| unnamed protein product [Vitis vinifera] Length = 158 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 87 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 130 >gi|268679893|ref|YP_003304324.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] gi|268617924|gb|ACZ12289.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] Length = 353 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ + +R+ Sbjct: 299 AHMLRHTFATLLYQKNRDLILVQEALGHADLNTSRIYTHFDKERLK 344 >gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] Length = 418 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406 >gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 317 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+FAT LL G +L+ +Q +LGH+ +STT Y++V+ + + +T+K Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVSPDVKRKAAAKMDKLLTKK 312 >gi|315607652|ref|ZP_07882647.1| integrase [Prevotella buccae ATCC 33574] gi|315250835|gb|EFU30829.1| integrase [Prevotella buccae ATCC 33574] Length = 409 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFERF 398 >gi|299141180|ref|ZP_07034317.1| integrase [Prevotella oris C735] gi|298577140|gb|EFI49009.1| integrase [Prevotella oris C735] Length = 409 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFERF 398 >gi|320183918|gb|EFW58744.1| Resolvase [Shigella flexneri CDC 796-83] Length = 288 Score = 75.3 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A HL +G R +QS+LGH +T+IYT V Sbjct: 212 VPVTPHTFRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRV 255 >gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 407 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H++RH++AT L N ++++QS++GH+ ++TT IYT+V ++M + + Sbjct: 349 FHSMRHTYATRLFENDVPIKTVQSLMGHNDITTTMNIYTHVTPQQMTDEVQK 400 >gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74] Length = 372 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH++AT LS G D+ ++ +LGH L TTQIY + + + D+ Sbjct: 314 PITFHSFRHTYATLQLSLGTDIYTVSKMLGHRELKTTQIYAKIVDQSKRDAADK 367 >gi|324020550|gb|EGB89769.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 336 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHLAPDYLQNAV 325 >gi|300715658|ref|YP_003740461.1| phage integrase [Erwinia billingiae Eb661] gi|299061494|emb|CAX58608.1| Phage integrase [Erwinia billingiae Eb661] Length = 346 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + N G++ ++ ILGH+ + T IY + + + + Sbjct: 286 HVLRHTFASHFMMNSGNILVLRQILGHTDIKMTMIYAHFSPDHLEDA 332 >gi|295697898|ref|YP_003602555.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295060010|gb|ADF64747.1| putative resolvase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 258 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYALHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|293420941|ref|ZP_06661375.1| hypothetical protein ECCG_04310 [Escherichia coli B088] gi|291324811|gb|EFE64227.1| hypothetical protein ECCG_04310 [Escherichia coli B088] Length = 115 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V + M + Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDMAARHR 97 >gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 383 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T HT RH+FAT +L+ G DL + +LGH+++ TT IY + K+ E + Sbjct: 323 TITFHTARHTFATMMLTLGADLYTTSKLLGHTQVKTTTIYAKIVDKKKDEAVN 375 >gi|254160925|ref|YP_003044033.1| integrase for prophage [Escherichia coli B str. REL606] gi|253972826|gb|ACT38497.1| integrase for prophage [Escherichia coli B str. REL606] gi|253977046|gb|ACT42716.1| integrase for prophage [Escherichia coli BL21(DE3)] Length = 314 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 311 >gi|188532702|ref|YP_001906499.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] gi|188027744|emb|CAO95599.1| Bacteriophage 186 integrase [Erwinia tasmaniensis Et1/99] Length = 342 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + + + Sbjct: 278 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVR 326 >gi|300773919|ref|ZP_07083788.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760090|gb|EFK56917.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 416 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406 Query: 62 QKDK 65 ++ Sbjct: 407 AMEE 410 >gi|305432060|ref|ZP_07401227.1| phage integrase family site-specific recombinase [Campylobacter coli JV20] gi|304445144|gb|EFM37790.1| phage integrase family site-specific recombinase [Campylobacter coli JV20] Length = 368 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 311 AHMLRHTFATLLYKKQKDLVLVQEALGHANLNTSRIYTHFDNDKLK 356 >gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 418 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406 >gi|260593190|ref|ZP_05858648.1| integrase [Prevotella veroralis F0319] gi|260534898|gb|EEX17515.1| integrase [Prevotella veroralis F0319] Length = 435 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ + K Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMDRLIAKLFSK 411 Query: 64 DKKN 67 +KKN Sbjct: 412 EKKN 415 >gi|193805068|gb|ACF22181.1| putative resolvase [Escherichia coli] Length = 260 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|167617449|ref|ZP_02386080.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 205 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q LGH L+ T Y +++ + + E Sbjct: 137 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 182 >gi|227329213|ref|ZP_03833237.1| phage integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 343 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +Q ILGH+ + T Y + + E Sbjct: 284 HVLRHTFASHFMMNGGNILVLQRILGHANIRETMKYAHFAPDHLEEAV 331 >gi|325104265|ref|YP_004273919.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973113|gb|ADY52097.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 416 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406 Query: 62 QKDK 65 ++ Sbjct: 407 AMEE 410 >gi|227326878|ref|ZP_03830902.1| putative integrase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 325 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + NGG++ ++ ILGH+ + T Y + + Sbjct: 267 HVLRHTFASHFMMNGGNILVLKDILGHTSIQMTMRYAHFAPDHL 310 >gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612] gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612] Length = 320 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+R++Q +LGH +STT+IYT++ + E Q Sbjct: 254 KISVHKLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAIYQ 308 >gi|300726814|ref|ZP_07060244.1| integrase [Prevotella bryantii B14] gi|299775927|gb|EFI72507.1| integrase [Prevotella bryantii B14] Length = 404 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFDRF 393 >gi|314952603|ref|ZP_07855596.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313595291|gb|EFR74136.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] Length = 330 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 270 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQFVKKTGDRF 324 >gi|317177489|dbj|BAJ55278.1| integrase-recombinase protein [Helicobacter pylori F16] gi|317177493|dbj|BAJ55282.1| integrase-recombinase protein [Helicobacter pylori F16] Length = 355 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 301 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKQRLEEA 348 >gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] Length = 336 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Query: 1 MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H LRH+ AT + G D ++ ILGH L+TT+IYT++ S+ + + +P Sbjct: 261 LGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNLRDA-ANANPL 319 Query: 60 ITQ---KDKKN 67 Q K +KN Sbjct: 320 ADQHIRKHRKN 330 >gi|288801867|ref|ZP_06407309.1| integrase [Prevotella melaninogenica D18] gi|288335909|gb|EFC74342.1| integrase [Prevotella melaninogenica D18] Length = 409 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFNRF 398 >gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 291 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 32/45 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 S + H LRHS+ATHLL G DLRS+Q +LGH+ L+ T YT++ Sbjct: 227 SISPHNLRHSYATHLLERGLDLRSVQHLLGHNSLNATAKYTHLTD 271 >gi|314939350|ref|ZP_07846593.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314941881|ref|ZP_07848746.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314994173|ref|ZP_07859479.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997838|ref|ZP_07862745.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588142|gb|EFR66987.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591408|gb|EFR70253.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313599328|gb|EFR78173.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313641359|gb|EFS05939.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 329 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 269 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQFVKKTGDRF 323 >gi|260769153|ref|ZP_05878086.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] gi|260614491|gb|EEX39677.1| hypothetical bacteriophage integrase [Vibrio furnissii CIP 102972] Length = 322 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAHFAPDYLQDAVR 315 >gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 74.9 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + GG++ +Q +LGH+ + T Y + + + + + +P T D+ Sbjct: 276 HVLRHTFASHFMMKGGNILVLQRVLGHTDIKMTMRYAHFAPEHLEDAL-RLNPLATSGDE 334 >gi|218508164|ref|ZP_03506042.1| site-specific tyrosine recombinase XerD [Rhizobium etli Brasil 5] Length = 54 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 26/52 (50%), Positives = 36/52 (69%) Query: 14 THLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 +HLL+NG DLR +Q +LGHS +STTQIYT+V +R+ ++ HP Q K Sbjct: 1 SHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHPLAKQAKK 52 >gi|148982562|ref|ZP_01816804.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] gi|145960413|gb|EDK25803.1| Hypothetical bacteriophage integrase [Vibrionales bacterium SWAT-3] Length = 138 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+H + NGG++ +++ ILGH+ ++ T Y ++ +++ + +P +D Sbjct: 66 HVLRHTFASHFIMNGGNILTLKEILGHASITQTMAYAHLAPDHLIDAV-KLNPLSRLRDP 124 Query: 66 KN 67 +N Sbjct: 125 QN 126 >gi|170576371|ref|XP_001893602.1| resolvase [Brugia malayi] gi|37496517|emb|CAD50592.1| resolvase [Cloning vector pUvBBAC] gi|158600296|gb|EDP37566.1| resolvase [Brugia malayi] gi|222834586|gb|EEE73049.1| predicted protein [Populus trichocarpa] gi|296775705|gb|ADH42981.1| Integrase [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] gi|312843168|gb|ADR02804.1| ResD [Shuttle vector pMycoFos] Length = 115 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 44 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 87 >gi|69245847|ref|ZP_00603664.1| Phage integrase [Enterococcus faecium DO] gi|257882019|ref|ZP_05661672.1| phage integrase [Enterococcus faecium 1,231,502] gi|258615559|ref|ZP_05713329.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|293563473|ref|ZP_06677921.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|294620814|ref|ZP_06700018.1| site-specific recombinase, phage integrase family [Enterococcus faecium U0317] gi|314947742|ref|ZP_07851149.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|68195549|gb|EAN09991.1| Phage integrase [Enterococcus faecium DO] gi|257817677|gb|EEV45005.1| phage integrase [Enterococcus faecium 1,231,502] gi|291599599|gb|EFF30612.1| site-specific recombinase, phage integrase family [Enterococcus faecium U0317] gi|291604475|gb|EFF33961.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|313645722|gb|EFS10302.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 380 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSVKKTGDRF 374 >gi|315444130|ref|YP_004077009.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315262433|gb|ADT99174.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 380 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRHS+ THLL G D +Q LGHS STT +YT+V S + Q + ++ Sbjct: 318 HCLRHSYTTHLLEAGYDPLFVQQQLGHSYASTTALYTSVGSDFKQRVVQQMIARRLRMEE 377 Query: 66 KN 67 + Sbjct: 378 AD 379 >gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 409 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FSFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398 >gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638] gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638] Length = 341 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +Q ILGHS + T Y + + Sbjct: 275 HVLRHTFASHFMMNGGNILVLQQILGHSTILMTMRYAHFAPDHLEAAV 322 >gi|168802255|ref|ZP_02827262.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] gi|189375754|gb|EDU94170.1| integrase for prophage CP-933T [Escherichia coli O157:H7 str. EC508] Length = 138 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ +Q ILGHS + T Y + + + Sbjct: 82 HVLRHTFASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVE 130 >gi|167991593|ref|ZP_02572692.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205330049|gb|EDZ16813.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 326 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMTYAHLAPDYLQNAV 315 >gi|152973649|ref|YP_001338689.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|294496725|ref|YP_003560418.1| resolvase [Klebsiella pneumoniae] gi|150958431|gb|ABR80459.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|293339434|gb|ADE43988.1| resolvase [Klebsiella pneumoniae] Length = 260 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+ H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYGMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|303236457|ref|ZP_07323044.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483308|gb|EFL46316.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 431 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ + K Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAK 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|303236846|ref|ZP_07323425.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483014|gb|EFL46030.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 439 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ K Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDSKISEDMDRLIARYKAK 407 Query: 64 DK 65 DK Sbjct: 408 DK 409 >gi|227537901|ref|ZP_03967950.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|325953712|ref|YP_004237372.1| integrase [Weeksella virosa DSM 16922] gi|227242286|gb|EEI92301.1| integrase [Sphingobacterium spiritivorum ATCC 33300] gi|323436330|gb|ADX66794.1| integrase family protein [Weeksella virosa DSM 16922] Length = 416 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G L S+ +LGH ++TTQIY + ++++ + + Sbjct: 347 KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEKVGKDMQK 400 >gi|300777414|ref|ZP_07087272.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300502924|gb|EFK34064.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+F T L+ G L S+ ++GH +STTQIY + S+++ + D P Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMDLVTPKFK 406 Query: 62 QKDK 65 ++ Sbjct: 407 AMEE 410 >gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] Length = 400 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V+ Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385 >gi|301058487|ref|ZP_07199500.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300447409|gb|EFK11161.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 113 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 30/51 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+FA+HL+ NG ++ +Q +LGH + T Y++++ + + + Sbjct: 33 HFHDTRHTFASHLIMNGATIKDVQELLGHKDIKMTMRYSHLSQEHKKKAVN 83 >gi|120435586|ref|YP_861272.1| phage integrase family protein [Gramella forsetii KT0803] gi|120435706|ref|YP_861392.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577736|emb|CAL66205.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577856|emb|CAL66325.1| phage integrase family protein [Gramella forsetii KT0803] Length = 337 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H+ RHS A HLL G +L I+ ILGH + TT+IY +S++ + + + I Sbjct: 258 KASCHSFRHSKAMHLLQAGVNLVYIRDILGHVSVQTTEIYARADSRQKRKALENAYVDIN 317 Query: 62 QKDK 65 ++ Sbjct: 318 PDEE 321 >gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 363 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRHSFA+HL G L++IQ +LGHS + T Y ++ +++ P Sbjct: 294 HDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLAPSTLIDAVAALDPQ 347 >gi|301308954|ref|ZP_07214899.1| integrase [Bacteroides sp. 20_3] gi|300832980|gb|EFK63605.1| integrase [Bacteroides sp. 20_3] Length = 379 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHSFA L+ G + S+ ILGH+ + TTQIY V + ++ Sbjct: 315 PVSFHLSRHSFAVMALNYGMPIESVSKILGHTDIKTTQIYAKVTNTKLNSDISAF 369 >gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236] gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236] Length = 284 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y +++ + Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHLSPDYLQNAV 273 >gi|300775803|ref|ZP_07085664.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300505830|gb|EFK36967.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G L S+ +LGH ++TTQIY + ++++ + + Sbjct: 347 KVTFHLARHTFATLFLSEGVPLESLSKMLGHKNIATTQIYAKILNEKVGKDMQK 400 >gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] Length = 400 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V+ Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385 >gi|158522719|ref|YP_001530589.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511545|gb|ABW68512.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 210 Score = 74.9 bits (184), Expect = 4e-12, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRHS+A L DLR++Q LGH+ + TTQIY +V + + + + Sbjct: 157 SVHALRHSYAVQLYRKKRDLRAVQKQLGHASIQTTQIYADVTKEDIQQQIN 207 >gi|325860402|ref|ZP_08173514.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482060|gb|EGC85081.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 404 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 337 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 393 >gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] Length = 278 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + HTLRH+FA HL G L IQ++LGH TQIY + + E YDQ Sbjct: 222 IPFSPHTLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQTQIYARLYNHARKEQYDQ 276 >gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] Length = 393 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T H RH+ A+ L G DL+ IQ LGH + TT IYT+V + + D+ Sbjct: 312 ITPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKKDNTNDKF 366 >gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] Length = 400 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V+ Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385 >gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 284 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y +++ + Sbjct: 226 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYAHLSPDYLQNAV 273 >gi|315607168|ref|ZP_07882172.1| integrase [Prevotella buccae ATCC 33574] gi|315251222|gb|EFU31207.1| integrase [Prevotella buccae ATCC 33574] Length = 448 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ +K Sbjct: 356 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKHQEK 415 Query: 64 DKKN 67 +K++ Sbjct: 416 NKED 419 >gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 445 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L++NG + +Q +LGH+++ TTQ Y ++ + +++ Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDA 375 >gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 34/50 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH LRH+FAT+L+ +L IQ++LGH+ + TQIYT+V+ + + + Sbjct: 244 AHVLRHTFATNLVRRKANLIEIQNLLGHADVRMTQIYTHVSPESLRSTVN 293 >gi|228471376|ref|ZP_04056177.1| integrase [Porphyromonas uenonis 60-3] gi|228306877|gb|EEK15990.1| integrase [Porphyromonas uenonis 60-3] Length = 404 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + +AH RH+FAT + L G + ++ +LGHS + TT+ Y +V K++ + ++Q Sbjct: 337 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQF 393 >gi|242279119|ref|YP_002991248.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122013|gb|ACS79709.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 395 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH+FA+ L++ G L ++ +LGHS + TT YT+ ++ + Sbjct: 343 AHCFRHTFASRLIAKGAPLTVVKKMLGHSNIQTTMRYTHTQDEQCRDA 390 >gi|158314368|ref|YP_001506876.1| integrase family protein [Frankia sp. EAN1pec] gi|158314559|ref|YP_001507067.1| integrase family protein [Frankia sp. EAN1pec] gi|158109773|gb|ABW11970.1| integrase family protein [Frankia sp. EAN1pec] gi|158109964|gb|ABW12161.1| integrase family protein [Frankia sp. EAN1pec] Length = 355 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ + NG DL SIQ +LGHS ++TT Y +V+ R+ + + Q+ Sbjct: 290 TPHILRHYCASQMYLNGIDLVSIQEMLGHSWVATTMRYVHVHRTRIEDAWIAGQGRAAQR 349 >gi|330822390|ref|YP_004362611.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374227|gb|AEA65581.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 770 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FA H L G D+R +QS+LGH+ L+TT Y ++ R + D Sbjct: 596 ASTHWLRHTFANHGLDAGADIRDMQSLLGHASLATTTHYAKGDAARQYQTVDAF 649 >gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 400 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V+ Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385 >gi|288927977|ref|ZP_06421824.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330811|gb|EFC69395.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 409 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPQKLFEEFD 396 >gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] Length = 400 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVN 45 T HTLRH++AT NG D + +Q +LGHS L+ TT +YT+V+ Sbjct: 343 TCHTLRHTYATRCYENGVDQQVVQKLLGHSTLAMTTDLYTHVS 385 >gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016] gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH LRHSFA+ L+ +L IQ +LGHS L T IYT+ + + + + + Sbjct: 240 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVN 291 >gi|168998697|ref|YP_001687965.1| phage integrase family protein [Klebsiella pneumoniae NTUH-K2044] gi|238549716|dbj|BAH66067.1| resolvase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 259 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLNLLQSLMGHKSISSTEVYTKV 231 >gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 418 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406 >gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L+++G L +Q +LGHS +STTQ Y ++ + + Sbjct: 327 HDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAHLTQDTLRDA 373 >gi|254245075|ref|ZP_04938397.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192] gi|126198453|gb|EAZ62516.1| hypothetical protein PA2G_05961 [Pseudomonas aeruginosa 2192] Length = 178 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++Q ILGHS L+ T Y + + + + Sbjct: 123 HALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAHPSPDHLQDAVK 171 >gi|5824355|emb|CAB54522.1| Int protein [Enterobacteria phage WPhi] Length = 326 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|238023317|ref|YP_002907550.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880370|gb|ACR32700.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 564 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 500 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 559 Query: 62 QKDKK 66 + K Sbjct: 560 ARRAK 564 >gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2] gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2] Length = 404 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 ++ H LRH+ AT LL NG +++ IQ LGHS+LSTT Y++V SK E D Sbjct: 343 INFNFHCLRHTHATLLLENGANVKYIQQRLGHSQLSTTMDTYSHVTSKMESETID 397 >gi|132267|sp|P18021|REDM_ECOLX RecName: Full=Resolvase; AltName: Full=Protein D gi|144169|gb|AAA23010.1| ORF [Plasmid pColBM-C1139] gi|147038|gb|AAA24255.1| D protein [Plasmid ColBM-Cl139] Length = 260 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|238023303|ref|YP_002907536.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|238023496|ref|YP_002907729.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|238025678|ref|YP_002909910.1| Phage integrase family protein8 [Burkholderia glumae BGR1] gi|237880343|gb|ACR32674.1| Phage integrase family protein8 [Burkholderia glumae BGR1] gi|237880356|gb|ACR32686.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880549|gb|ACR32878.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 611 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 +T+ H RH+F T + G + +Q +LGH L TT IY N +RM + + H + Sbjct: 547 ATSPHAFRHTFGTQSAAAGMAIEVLQQVLGHGSLQTTTIYVNAEQQRMRQESAKYHARLA 606 Query: 62 QKDKK 66 + K Sbjct: 607 ARRAK 611 >gi|317481412|ref|ZP_07940479.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902397|gb|EFV24284.1| phage integrase [Bacteroides sp. 4_1_36] Length = 343 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H++RHS A HLL G +L I+ ILGH + TT IY +SK E + + +T Sbjct: 260 KISCHSIRHSKAMHLLQAGVNLVYIRDILGHVSIQTTDIYARADSKAKREALENAYTRLT 319 Query: 62 QK 63 Sbjct: 320 PN 321 >gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528] gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528] Length = 391 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H+LRH+FAT L N L+++Q +LGHS ++ T IYT+V + D+ Sbjct: 332 FHSLRHTFATRLFENNVPLKTVQMLLGHSNINITANIYTHVMPPEKFKAIDK 383 >gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 306 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 31/45 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRH+FA H L+ G LR +Q +LGH +STTQ+Y V ++ Sbjct: 239 ITPHTLRHTFAAHALTRGRALREVQQVLGHVSISTTQVYQQVAAQ 283 >gi|298373373|ref|ZP_06983362.1| integrase [Bacteroidetes oral taxon 274 str. F0058] gi|298274425|gb|EFI15977.1| integrase [Bacteroidetes oral taxon 274 str. F0058] Length = 431 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ + D+ + K Sbjct: 348 SYHVARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISKDMDRLIAKQSAK 407 Query: 64 DKK 66 DK+ Sbjct: 408 DKE 410 >gi|220683971|gb|ACL80793.1| putative transposase [Vibrio tasmaniensis] Length = 506 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 33/50 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H+ RH FATHLL G DLRS+Q++LGH+ L+TT YT + + + Sbjct: 89 ASPHSPRHCFATHLLEQGLDLRSLQTLLGHASLNTTARYTRITQIKQRDA 138 >gi|242241242|ref|YP_002989423.1| integrase family protein [Dickeya dadantii Ech703] gi|242133299|gb|ACS87601.1| integrase family protein [Dickeya dadantii Ech703] Length = 327 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG+L ++Q ILGH+ + T Y ++ + Sbjct: 269 HILRHTFASHFVMNGGNLVALQQILGHASIQQTMTYAHLAPDYLQNAI 316 >gi|283777783|ref|YP_003368481.1| resolvase [Citrobacter rodentium ICC168] gi|282952071|emb|CBG91801.1| resolvase [Citrobacter rodentium ICC168] Length = 263 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +Q+++GH +S+T+ YT V Sbjct: 192 VPVTPHTFRHSYAMHMLYAGIPLKVLQALMGHKSVSSTEAYTKV 235 >gi|315181692|gb|ADT88605.1| Hypothetical bacteriophage integrase [Vibrio furnissii NCTC 11218] Length = 334 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 266 AHVLRHTFASHFMMNGGNILTLQKILGHATIQQTMTYAHFAPDYLQDAVR 315 >gi|296164532|ref|ZP_06847103.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900132|gb|EFG79567.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 231 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAHTLRH FAT +LR++Q++LGHS ++TT+ YT V+ + Sbjct: 178 TAHTLRHRFATRAYRGSRNLRAVQTLLGHSSVATTERYTAVDDDEIRAAMMSA 230 >gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] Length = 282 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 33/47 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K + Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267 >gi|146310998|ref|YP_001176072.1| phage integrase family protein [Enterobacter sp. 638] gi|145317874|gb|ABP60021.1| phage integrase family protein [Enterobacter sp. 638] Length = 339 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ ++Q ILGH + T Y +++ + + Sbjct: 281 HVLRHTFAAHFMMSGGNILALQRILGHHDIKMTMRYAHLSPEHL 324 >gi|83719554|ref|YP_440652.1| Fels-2 prophage protein [Burkholderia thailandensis E264] gi|83653379|gb|ABC37442.1| Fels-2 prophage protein [Burkholderia thailandensis E264] Length = 191 Score = 74.5 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 31/46 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FA+H + NGG++ ++Q LGH L+ T Y +++ + + E Sbjct: 123 HVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAHLSPEHLAE 168 >gi|331668097|ref|ZP_08368949.1| resolvase (Protein D) [Escherichia coli TA271] gi|331064611|gb|EGI36518.1| resolvase (Protein D) [Escherichia coli TA271] Length = 120 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 49 VPVTPHTFRHSYAMHMLYVGIPLKVLQSLMGHKSISSTEVYTKV 92 >gi|300899506|ref|ZP_07117748.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300922907|ref|ZP_07138984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300947236|ref|ZP_07161442.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] gi|300356911|gb|EFJ72781.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300420785|gb|EFK04096.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300453136|gb|EFK16756.1| site-specific recombinase, phage integrase family [Escherichia coli MS 116-1] Length = 336 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 325 >gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555] gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555] Length = 287 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH LRHSFA+ L+ +L IQ +LGHS L T IYT+ + + + + + Sbjct: 234 VSAHILRHSFASKLIQQEVNLVKIQKLLGHSDLRVTSIYTHTSKEELRQAVN 285 >gi|134045285|ref|YP_001096771.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] gi|132662910|gb|ABO34556.1| tyrosine recombinase XerC subunit [Methanococcus maripaludis C5] Length = 291 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+FAT + G DL+++ ILGH + TT IY + N + + + + Sbjct: 234 FRITPHILRHTFATRCIDMGMDLKTLSLILGHEDIKTTSIYLHKNKESLKREFLR 288 >gi|238760589|ref|ZP_04621720.1| Integrase [Yersinia aldovae ATCC 35236] gi|238701208|gb|EEP93794.1| Integrase [Yersinia aldovae ATCC 35236] Length = 345 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +Q ILGHS + T Y++ + Sbjct: 285 HVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYSHFAPDHLEAAV 332 >gi|120599713|ref|YP_964287.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120559806|gb|ABM25733.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 339 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T Y + + + + + Sbjct: 282 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYAHFAPEHLDDAITK 331 >gi|331660306|ref|ZP_08361241.1| resolvase (Protein D) [Escherichia coli TA206] gi|331052573|gb|EGI24609.1| resolvase (Protein D) [Escherichia coli TA206] Length = 260 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|226200966|ref|YP_002756570.1| resolvase [Escherichia coli] gi|260763809|ref|YP_003237848.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368] gi|284000234|ref|YP_003377921.1| resolvase [Escherichia coli O26:H-] gi|219881595|gb|ACL51965.1| resolvase [Escherichia coli] gi|257757234|dbj|BAI28735.1| putative resolvase ResA [Escherichia coli O26:H11 str. 11368] gi|283445174|gb|ADB20518.1| resolvase [Escherichia coli O26:H-] gi|323157093|gb|EFZ43219.1| resolvase [Escherichia coli EPECa14] gi|325699393|gb|ADZ45124.1| resolvase [Escherichia coli] Length = 260 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|288801474|ref|ZP_06406926.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331555|gb|EFC70041.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 397 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 33/48 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT +L+ G + S+ +LGHS ++TTQ+Y + +K++ Sbjct: 314 NLTFHMARHTFATMMLTKGVPVESVSKMLGHSSITTTQLYARITNKKI 361 >gi|300723961|ref|YP_003713274.1| integrase [Xenorhabdus nematophila ATCC 19061] gi|297630491|emb|CBJ91156.1| Integrase [Xenorhabdus nematophila ATCC 19061] Length = 337 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA H + NGG++ ++Q I+GH+ + T Y + + + + +P Sbjct: 268 HVLRHTFAAHFMMNGGNILTLQKIMGHANIQQTMAYAHFAPDYLQDAI-KFNP 319 >gi|119854946|ref|YP_935551.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119697664|gb|ABL94736.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 360 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ + +G DL +IQ +LGH ++TT Y +V+ + + + + + + Sbjct: 295 TPHVLRHYCASEVYRSGMDLVAIQELLGHQWVATTMRYVHVHREHIEDAWLKGQQRAASR 354 >gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum H04402 065] Length = 330 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT+ +++G + IQ ++GH +TTQIY ++ + + Y + Sbjct: 275 SIHPHLFRHSFATYKINSGMPMPIIQHLMGHESPATTQIYAQLSEETVKYEYKK 328 >gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 379 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+ AT +L+ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 373 >gi|300825416|ref|ZP_07105489.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300522125|gb|EFK43194.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 260 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 188 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 231 >gi|307322494|ref|ZP_07601844.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891863|gb|EFN22699.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 90 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+FA HLL G D+R+IQ +LGH L+TT Y + + ++ Sbjct: 17 PGTPHSLRHAFAVHLLEAGSDVRTIQLLLGHRSLATTAHYLRIATNKV 64 >gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] Length = 418 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 357 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 406 >gi|270340181|ref|ZP_06007346.2| integrase [Prevotella bergensis DSM 17361] gi|270332344|gb|EFA43130.1| integrase [Prevotella bergensis DSM 17361] Length = 384 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + +AH RH+FAT + L G + ++ +LGHS + TT+ Y +V K++ + ++Q Sbjct: 317 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQF 373 >gi|257866765|ref|ZP_05646418.1| phage integrase [Enterococcus casseliflavus EC30] gi|257872718|ref|ZP_05652371.1| phage integrase [Enterococcus casseliflavus EC10] gi|257800723|gb|EEV29751.1| phage integrase [Enterococcus casseliflavus EC30] gi|257806882|gb|EEV35704.1| phage integrase [Enterococcus casseliflavus EC10] Length = 380 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ Sbjct: 320 ITPHGFRHTHCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSVKKTGDRF 374 >gi|307565760|ref|ZP_07628229.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345586|gb|EFN90954.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 431 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V +++ E D+ + K Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQSAK 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 282 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 33/47 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K + Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267 >gi|301328247|ref|ZP_07221367.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|300845276|gb|EFK73036.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] Length = 336 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 325 >gi|301048720|ref|ZP_07195729.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] gi|300299466|gb|EFJ55851.1| site-specific recombinase, phage integrase family [Escherichia coli MS 185-1] Length = 336 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 278 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 325 >gi|194446198|ref|YP_002043286.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404861|gb|ACF65083.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 326 Score = 74.5 bits (183), Expect = 5e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|238025595|ref|YP_002909827.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880260|gb|ACR32591.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 779 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FA H L G D+R +Q++LGH+ L+TT Y ++ R + D Sbjct: 596 ASTHWLRHTFANHGLDAGADIRDMQALLGHASLATTTHYAKGDAARQYQTVDAF 649 >gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 32/47 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ +S+G DL ++Q +LGH ++ TQ Y ++N+ + + Sbjct: 344 HDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKA 390 >gi|282877848|ref|ZP_06286660.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300059|gb|EFA92416.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 409 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398 >gi|226948086|ref|YP_002803177.1| phage integrase [Clostridium botulinum A2 str. Kyoto] gi|226844485|gb|ACO87151.1| phage integrase [Clostridium botulinum A2 str. Kyoto] Length = 138 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT+++ ++ + Sbjct: 76 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVN 129 >gi|332982026|ref|YP_004463467.1| integrase family protein [Mahella australiensis 50-1 BON] gi|332699704|gb|AEE96645.1| integrase family protein [Mahella australiensis 50-1 BON] Length = 287 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT-HPS 59 T +TLRHSFA ++LS+G D++++Q +LGH+ +STT YT Y Q HP Sbjct: 237 PITPYTLRHSFAINMLSSGMDIKTVQQLLGHTDISTT--YT----------YMQFVHPK 283 >gi|303243200|ref|ZP_07329628.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589255|gb|EFL59075.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 337 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT+RHS + HLL G +L I+ LGH+ + TT+IY N + + + P++ Sbjct: 257 KVSPHTMRHSKSMHLLEGGVNLIYIRDFLGHASVVTTEIYAKSNPEIKRKAIEAVSPNVL 316 Query: 62 QKDK 65 +K Sbjct: 317 PTEK 320 >gi|261346812|ref|ZP_05974456.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282565212|gb|EFB70747.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 325 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 31/44 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + NGG++ +++ ILGH+ ++ T +Y ++ + Sbjct: 268 HVLRHTFASHFVMNGGNIVALKEILGHASINQTMVYAHLAPDYL 311 >gi|260593266|ref|ZP_05858724.1| integrase [Prevotella veroralis F0319] gi|260534823|gb|EEX17440.1| integrase [Prevotella veroralis F0319] Length = 431 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ + D+ + K Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAK 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|307564494|ref|ZP_07627035.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346854|gb|EFN92150.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 409 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATFITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398 >gi|29347856|ref|NP_811359.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572433|ref|ZP_04849835.1| integrase [Bacteroides sp. 1_1_6] gi|29339758|gb|AAO77553.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837848|gb|EES65937.1| integrase [Bacteroides sp. 1_1_6] Length = 409 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 347 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398 >gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L++NG + +Q +LGH+++ TTQ Y ++ + +++ Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDA 375 >gi|317052809|ref|YP_004119575.1| integrase family protein [Pantoea sp. At-9b] gi|316953549|gb|ADU73019.1| integrase family protein [Pantoea sp. At-9b] Length = 288 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+++QS+LGH +T++YT V Sbjct: 216 VPVTLHTFRHSYAMHMLYAGTPLKALQSLLGHKSAKSTEVYTRV 259 >gi|260641922|ref|ZP_05413998.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624125|gb|EEX46996.1| integrase [Bacteroides finegoldii DSM 17565] Length = 436 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 374 HTARHSFASLITLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 425 >gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] Length = 379 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+ AT +L+ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 322 VTFHTARHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 373 >gi|54303342|ref|YP_133335.1| bacteriophage integrase [Photobacterium profundum SS9] gi|46916772|emb|CAG23535.1| Hypothetical bacteriophage integrase [Photobacterium profundum SS9] Length = 326 Score = 74.1 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q LGH+ + T Y + + + ++ Sbjct: 270 HVLRHTFASHFMQNGGNILTLQKALGHATIQQTMEYAHFSPDYLQDVV 317 >gi|317504687|ref|ZP_07962651.1| integrase [Prevotella salivae DSM 15606] gi|315664191|gb|EFV03894.1| integrase [Prevotella salivae DSM 15606] Length = 431 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ + D+ + K Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISKDMDRLIAKQSAK 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|288801169|ref|ZP_06406624.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331780|gb|EFC70263.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 439 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K Sbjct: 348 SYHMGRHTFGTMCLSAGIPIESIAKMMGHTSIASTQIYAQVTDCKISEDMDKLIAKHQEK 407 Query: 64 DKKN 67 +K+N Sbjct: 408 NKEN 411 >gi|30065733|ref|NP_839878.1| Int [Yersinia phage L-413C] gi|293417378|ref|ZP_06660002.1| phage integrase family site-specific recombinase [Escherichia coli B185] gi|30025927|gb|AAP04466.1| Int [Yersinia phage L-413C] gi|291430898|gb|EFF03894.1| phage integrase family site-specific recombinase [Escherichia coli B185] Length = 326 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 401 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + G D+ +++ +LGHS +STTQIYT++ ++ ++ +P Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHLQEFQVRAAIEE-NPLGKV 335 Query: 63 KDKK 66 K K Sbjct: 336 KKPK 339 >gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] Length = 418 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V + E Sbjct: 357 ITYHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDAKKEEA 406 >gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2] gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2] Length = 315 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H RH+FAT LL G D+ +I+ +LGHS + TT Y V K E + Sbjct: 262 HQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDKAKQEAIRK 312 >gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 413 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H+LRH+FA+ L+ G DL S++ ++GH LS T+ Y++++ + I Sbjct: 333 KVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLSPDSLRRAVKGLEAGIA 392 Query: 62 QKDKK 66 K ++ Sbjct: 393 AKSEE 397 >gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 282 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 33/47 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K + Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267 >gi|260170442|ref|ZP_05756854.1| transposase [Bacteroides sp. D2] gi|315918796|ref|ZP_07915036.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692671|gb|EFS29506.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 409 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSF++ + L G + ++ +LGHS + TTQIY V K++ E D+ Sbjct: 343 PLTYHMGRHSFSSLITLEGGVPIETVSKMLGHSDIKTTQIYARVTPKKLFEDMDKY 398 >gi|91787470|ref|YP_548422.1| phage integrase [Polaromonas sp. JS666] gi|91696695|gb|ABE43524.1| phage integrase [Polaromonas sp. JS666] Length = 286 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL G DL +IQ +LGH ++TT Y ++ Sbjct: 225 HTLRHCFATHLLEGGVDLFTIQKLLGHGHIATTGRYLHL 263 >gi|116662238|ref|YP_829292.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613002|gb|ABK05711.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 363 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L G D++++Q +LGH LSTT Y +V S+ + + + + + + Sbjct: 296 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVEQAWKNANERVESR 355 >gi|325499381|gb|EGC97240.1| hypothetical protein ECD227_3478 [Escherichia fergusonii ECD227] Length = 326 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|320180759|gb|EFW55685.1| Integrase [Shigella boydii ATCC 9905] gi|320196862|gb|EFW71484.1| Integrase [Escherichia coli WV_060327] Length = 326 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|254039131|ref|ZP_04873181.1| integrase [Escherichia sp. 1_1_43] gi|226838567|gb|EEH70596.1| integrase [Escherichia sp. 1_1_43] Length = 326 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|323963811|gb|EGB59309.1| phage integrase [Escherichia coli M863] Length = 123 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 30/42 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 54 VTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 95 >gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 317 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 33/47 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K + Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267 >gi|282879690|ref|ZP_06288420.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306359|gb|EFA98389.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 430 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V ++ E D+ + K Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSAK 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|213027994|ref|ZP_03342441.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 189 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 120 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 174 >gi|170680409|ref|YP_001746252.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|213417372|ref|ZP_03350514.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|170518127|gb|ACB16305.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] Length = 326 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|255690107|ref|ZP_05413782.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624389|gb|EEX47260.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 429 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T H RH++AT L+NG D+ ++ +LGH +++TTQIY + Sbjct: 358 ITFHCFRHTYATLQLTNGTDIYTVSKMLGHKKVTTTQIYAKI 399 >gi|307313958|ref|ZP_07593572.1| integrase family protein [Escherichia coli W] gi|33413728|gb|AAN28248.1| Int [Enterobacteria phage WPhi] gi|306906275|gb|EFN36791.1| integrase family protein [Escherichia coli W] gi|315063206|gb|ADT77533.1| integrase [Escherichia coli W] gi|323380729|gb|ADX52997.1| integrase family protein [Escherichia coli KO11] Length = 326 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 291 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T +R+SFA H++ NG DL S++ ++GH+ ++ TQ YT Y +THP Sbjct: 235 TPQAIRNSFAIHMIENGADLNSMKELMGHANITATQHYTKQRIGETFGTYHKTHPRA 291 >gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 314 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-----IYTNVNSKRMMEIYDQ 55 + + HTLRHSFATHLL G D + +LG +S Q +Y V + E++ Sbjct: 248 VGVSPHTLRHSFATHLLDGGADAGVVHQLLG--NVSAEQGRGGRMYALVTQGLLTEVHAM 305 Query: 56 THPSITQK 63 HP + Sbjct: 306 AHPRARAE 313 >gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146] gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146] Length = 295 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GG++ +Q ILGHS ++ T Y + + Sbjct: 226 HVLRHTFASHFMMQGGNILVLQQILGHSTITMTMRYAHFAPDHL 269 >gi|303236762|ref|ZP_07323341.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482930|gb|EFL45946.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 404 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 393 >gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 390 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H+LRH++AT L G L+++Q +LGHS + T IYT+V + ++ Sbjct: 334 FHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHVIGNEKISAVEK 385 >gi|330822190|ref|YP_004351018.1| Phage integrase family protein [Burkholderia gladioli BSR3] gi|327374342|gb|AEA65695.1| Phage integrase family protein [Burkholderia gladioli BSR3] Length = 611 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H RH+F T ++ G + +Q +LGH L TT IY N +RM + + H +T Sbjct: 548 TSPHAFRHTFGTQSVAAGMAIEVLQQVLGHGSLQTTTIYVNAEQRRMRQESAKYHARLTA 607 Query: 63 K 63 + Sbjct: 608 R 608 >gi|298388185|ref|ZP_06997722.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] gi|298259053|gb|EFI01940.1| integrase/recombinase XerD [Bacteroides sp. 1_1_14] Length = 77 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFATHLL G D++ ++ ++GH+ + TT+ Y ++ I Sbjct: 16 PHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNI 63 >gi|238753673|ref|ZP_04615035.1| Integrase [Yersinia ruckeri ATCC 29473] gi|238708225|gb|EEQ00581.1| Integrase [Yersinia ruckeri ATCC 29473] Length = 95 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+FA+H + NGG++ ++Q ILGHS + T Y ++ + + + +P + Sbjct: 40 HALRHTFASHFMMNGGNILTLQKILGHSNILQTMTYAHLAPDYLQDAV-RFNPLADR 95 >gi|222873502|gb|EEF10633.1| predicted protein [Populus trichocarpa] Length = 71 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 34/48 (70%) Query: 16 LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 +L + GDLR++Q +LGH+ +STTQIYT ++ + + + Y+ HP ++ Sbjct: 1 MLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYESAHPRARRQ 48 >gi|14600982|ref|NP_147508.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] gi|5104468|dbj|BAA79783.1| tyrosine recombinase XerC/XerD [Aeropyrum pernix K1] Length = 362 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ--THPS 59 H LRH+FAT L G L ++Q +LGHS + TQ+Y ++ + Y Q P Sbjct: 236 KVRPHILRHTFATEALRRGMSLAALQRLLGHSDIKVTQLYLHMTYDDVEREYYQTFASPM 295 Query: 60 ITQ 62 +TQ Sbjct: 296 LTQ 298 >gi|312964753|ref|ZP_07778994.1| resolvase [Escherichia coli 2362-75] gi|312290602|gb|EFR18481.1| resolvase [Escherichia coli 2362-75] Length = 123 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 51 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 94 >gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 335 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GG++ +Q ILGHS + T Y + + Sbjct: 277 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHL 320 >gi|322831282|ref|YP_004211309.1| integrase family protein [Rahnella sp. Y9602] gi|321166483|gb|ADW72182.1| integrase family protein [Rahnella sp. Y9602] Length = 254 Score = 74.1 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ +Q +LGH+ + T Y + E + +P Sbjct: 198 HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPNHFDEAL-KFNP 249 >gi|282860291|ref|ZP_06269360.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282586888|gb|EFB92124.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 409 Score = 74.1 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDRF 398 >gi|253755988|ref|YP_003029128.1| phage integrase [Streptococcus suis BM407] gi|251818452|emb|CAZ56281.1| putative phage integrase [Streptococcus suis BM407] Length = 380 Score = 74.1 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L G ++ +Q LGH + TT IY +V + ++ Sbjct: 320 ITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIYAHVTENTKEKTAEKF 374 >gi|281424827|ref|ZP_06255740.1| integrase [Prevotella oris F0302] gi|299142376|ref|ZP_07035508.1| integrase [Prevotella oris C735] gi|281401197|gb|EFB32028.1| integrase [Prevotella oris F0302] gi|298576098|gb|EFI47972.1| integrase [Prevotella oris C735] Length = 409 Score = 74.1 bits (182), Expect = 7e-12, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDRF 398 >gi|317505585|ref|ZP_07963495.1| integrase [Prevotella salivae DSM 15606] gi|315663297|gb|EFV03054.1| integrase [Prevotella salivae DSM 15606] Length = 429 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ D+ Sbjct: 359 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDE 412 >gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] Length = 335 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 29/45 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+FA+ + NGG++ ++Q ILGH+ + T +Y ++ + Sbjct: 277 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHLAPDYLQ 321 >gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 33/47 (70%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 ++H RHSFA+HL +G D++ IQS+LGH +T +Y +V++K + Sbjct: 221 VSSHACRHSFASHLFESGTDIKYIQSLLGHVDPRSTDVYLHVSNKTL 267 >gi|319901057|ref|YP_004160785.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416088|gb|ADV43199.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 392 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 30/43 (69%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQIYTNV Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQIYTNV 372 >gi|313676056|ref|YP_004054052.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942754|gb|ADR21944.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 286 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 30/44 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 TAHTLRHS+ATHLL G D+ +++ +LGH + TT Y +V Sbjct: 227 ITAHTLRHSYATHLLEMGTDIMTLKDLLGHGDIQTTLGYLHVAR 270 >gi|253752228|ref|YP_003025369.1| phage integrase [Streptococcus suis SC84] gi|253754054|ref|YP_003027195.1| phage integrase [Streptococcus suis P1/7] gi|251816517|emb|CAZ52153.1| putative phage integrase [Streptococcus suis SC84] gi|251820300|emb|CAR46803.1| putative phage integrase [Streptococcus suis P1/7] gi|292558819|gb|ADE31820.1| integrase [Streptococcus suis GZ1] gi|319758617|gb|ADV70559.1| putative phage integrase [Streptococcus suis JS14] Length = 380 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L G ++ +Q LGH + TT IY +V + ++ Sbjct: 320 ITPHGFRHTHCSLLFEAGASIKEVQERLGHEDIKTTMNIYAHVTENTKEKTAEKF 374 >gi|237750921|ref|ZP_04581401.1| site-specific recombinase [Helicobacter bilis ATCC 43879] gi|229373366|gb|EEO23757.1| site-specific recombinase [Helicobacter bilis ATCC 43879] Length = 374 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 32/46 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRHSFAT L + DL +Q LGHS + T++IYT+ +++R+ Sbjct: 306 AHLLRHSFATMLYNKSKDLILVQESLGHSSVETSRIYTHFDNQRLK 351 >gi|188495542|ref|ZP_03002812.1| Int [Escherichia coli 53638] gi|188490741|gb|EDU65844.1| Int [Escherichia coli 53638] Length = 327 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 268 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 315 >gi|315607167|ref|ZP_07882171.1| integrase [Prevotella buccae ATCC 33574] gi|315251221|gb|EFU31206.1| integrase [Prevotella buccae ATCC 33574] Length = 409 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPRKLFEEFDRF 398 >gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 347 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+ A+ L G + I+ +GHS + TT YT+++ K + E Sbjct: 294 PHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRYTHLSPKDLQEA 341 >gi|223587856|emb|CAX36643.1| integron intagrase IntI protein [Arthrobacter sp. JEK-2009] Length = 113 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 24/40 (60%), Positives = 30/40 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFAT LL +G D+R++Q +LGHS +STT Y Sbjct: 74 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTIDY 113 >gi|13475204|ref|NP_106768.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025955|dbj|BAB52554.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 342 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H+LRH+ A HLL G D +I LGH+ L+TT Y + + Q P I Sbjct: 262 IHPHSLRHTTAIHLLKAGVDFVTISQWLGHASLNTTMRYARADIDLKRQALAQVFPEILA 321 Query: 63 KDK 65 K Sbjct: 322 PPK 324 >gi|307564939|ref|ZP_07627459.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346379|gb|EFN91696.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ D+ Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDE 393 >gi|299142888|ref|ZP_07036015.1| integrase [Prevotella oris C735] gi|298575617|gb|EFI47496.1| integrase [Prevotella oris C735] Length = 410 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ D+ Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYARITNKKIEHDMDE 393 >gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] Length = 398 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+ RH+ A LL +G D+ ++ ILGH + TTQIY + + E Sbjct: 340 ITFHSARHTHAVLLLEHGADIYTVSKILGHKEIRTTQIYAKIVDTKKKEA 389 >gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii DSM 519] gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium sticklandii] Length = 308 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS+A+ L+ G D+ ++ ++GHS ++T+IY ++N + + D+ HP Sbjct: 251 TLHKLRHSYASLLVQQGVDISIVKELMGHSDFNSTKIYVHLNMNNLRDSVDK-HP 304 >gi|266622036|ref|ZP_06114971.1| integrase [Clostridium hathewayi DSM 13479] gi|288866275|gb|EFC98573.1| integrase [Clostridium hathewayi DSM 13479] Length = 406 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTH---PSIT 61 H LRH++AT + G + +Q +LGH+ + TT Y +V + ++ Q P ++ Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLVNAIRQFQQATPPVS 395 Query: 62 QKDKK 66 +K +K Sbjct: 396 KKGRK 400 >gi|117926143|ref|YP_866760.1| phage integrase family protein [Magnetococcus sp. MC-1] gi|117609899|gb|ABK45354.1| phage integrase family protein [Magnetococcus sp. MC-1] Length = 153 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYD 54 T H LRHS+AT L+ N DLR+ Q ++GHS + +T IY+++ K++ D Sbjct: 92 EITPHVLRHSYATRLMENDVDLRTTQILMGHSSIKSTLIYSHLTEPTRKKLRSTLD 147 >gi|331006573|ref|ZP_08329863.1| Integrase [gamma proteobacterium IMCC1989] gi|330419606|gb|EGG93982.1| Integrase [gamma proteobacterium IMCC1989] Length = 328 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 33/51 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH++A+H + GGD+ ++++ILGHS L T Y +++ M + + Sbjct: 272 STHVLRHTYASHFVMKGGDILTLKNILGHSDLKVTMRYAHLSPDYMQQAVE 322 >gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 280 Score = 73.8 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHS+A+HL++ G L ++ +LGH R TT++YT ++ + E Y + Sbjct: 225 NVYPHRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYTLLHGDKRREEYRKY 279 >gi|327538852|gb|EGF25495.1| tyrosine type site-specific recombinase [Rhodopirellula baltica WH47] Length = 301 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 25/33 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSR 34 + T H+ RHSFATHL+ +G D+R IQ +LGH+ Sbjct: 269 AVTPHSFRHSFATHLIESGTDIRFIQKLLGHTN 301 >gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+ + NGG++ ++Q ILGH+ + T +Y ++ + Sbjct: 268 HVLRHTFASWFMMNGGNIIALQQILGHASIQQTMVYAHLAPDYLQHAV 315 >gi|300924591|ref|ZP_07140553.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300419222|gb|EFK02533.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 334 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|193068261|ref|ZP_03049225.1| integrase [Escherichia coli E110019] gi|192958540|gb|EDV88979.1| integrase [Escherichia coli E110019] Length = 334 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|332652921|ref|ZP_08418666.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518067|gb|EGJ47670.1| phage integrase [Ruminococcaceae bacterium D16] Length = 540 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L NG D++++ ++LGH +TT IYT++ S + E + Sbjct: 322 FHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTHITSDMLSEAAAK 373 >gi|16263337|ref|NP_436130.1| integrase/recombinase [Sinorhizobium meliloti 1021] gi|16263633|ref|NP_436426.1| Integrase/recombinase [Sinorhizobium meliloti 1021] gi|14524018|gb|AAK65542.1| integrase/recombinase [Sinorhizobium meliloti 1021] gi|14524343|gb|AAK65838.1| Integrase/recombinase [Sinorhizobium meliloti 1021] Length = 329 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHS A H+L D+R + LGH+ L +T+IY + +E+ D P Sbjct: 252 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSTEIYLRADPTEKLEMLDALAPLGI 311 Query: 62 QKDK 65 + K Sbjct: 312 KPGK 315 >gi|300854163|ref|YP_003779147.1| phage related integrase [Clostridium ljungdahlii DSM 13528] gi|300434278|gb|ADK14045.1| phage related integrase [Clostridium ljungdahlii DSM 13528] Length = 336 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRHS A HLL N +L I+ LGHS ++TT+IY N + + ++ IT Sbjct: 255 KLHPHILRHSKAMHLLENNVNLIYIRDFLGHSSVTTTEIYARCNPELKRKYIEEASNFIT 314 Query: 62 Q------KDKKN 67 + K +KN Sbjct: 315 ETVQDYSKTEKN 326 >gi|312970927|ref|ZP_07785106.1| integrase [Escherichia coli 1827-70] gi|310336688|gb|EFQ01855.1| integrase [Escherichia coli 1827-70] Length = 349 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ + Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL 324 >gi|282879691|ref|ZP_06288421.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281306360|gb|EFA98390.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 409 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSYVSMTERYAKVTPQKLFEEFDRF 398 >gi|168184027|ref|ZP_02618691.1| tyrosine recombinase XerC [Clostridium botulinum Bf] gi|237794099|ref|YP_002861651.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657] gi|182672827|gb|EDT84788.1| tyrosine recombinase XerC [Clostridium botulinum Bf] gi|229261398|gb|ACQ52431.1| tyrosine recombinase XerC [Clostridium botulinum Ba4 str. 657] Length = 138 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 S + H LRH+ AT + G D+RS+Q ILGH ++TT+IYT+++ ++ + Sbjct: 76 SISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTHIDEHQLQSAVN 129 >gi|2392139|pdb|1AIH|A Chain A, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392140|pdb|1AIH|B Chain B, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392141|pdb|1AIH|C Chain C, Catalytic Domain Of Bacteriophage Hp1 Integrase gi|2392142|pdb|1AIH|D Chain D, Catalytic Domain Of Bacteriophage Hp1 Integrase Length = 170 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + + +P Sbjct: 113 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAV-KFNP 164 >gi|290243122|ref|YP_003494792.1| integrase family protein [Thioalkalivibrio sp. K90mix] gi|288945627|gb|ADC73325.1| integrase family protein [Thioalkalivibrio sp. K90mix] Length = 322 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H +R SFAT LL NG DL ++Q ++GHS ++TTQIY + D + +K Sbjct: 263 PHDMRRSFATQLLDNGTDLLTVQRLMGHSSVTTTQIYDRRSDAASRAAVD----GLRRKR 318 Query: 65 KKN 67 K+ Sbjct: 319 GKD 321 >gi|222080265|ref|YP_002540129.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738910|gb|ACM39689.1| integrase/recombinase [Agrobacterium vitis S4] Length = 109 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRHS A HL G L I+ ILGH LSTT+IY +++ + + + + Sbjct: 31 ISPHILRHSKAMHLYEAGIPLPYIRDILGHVDLSTTEIYARASTEAKRKALEAAYVDVIS 90 Query: 63 KD 64 +D Sbjct: 91 ED 92 >gi|148974962|ref|ZP_01811942.1| Integrase [Vibrionales bacterium SWAT-3] gi|145965471|gb|EDK30720.1| Integrase [Vibrionales bacterium SWAT-3] Length = 125 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFA+H + NGG++ ++ ILGH+ +S T Y + + E Sbjct: 70 HVLRHSFASHFMMNGGNILVLRDILGHADISMTMRYAHFAPDHLSEAI 117 >gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS+AT L++NG L IQ+++GH + TT++Y ++ E+Y + Sbjct: 225 IHPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKKF 278 >gi|295089983|emb|CBK76090.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 342 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 10/72 (13%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN----SKRMME------IY 53 T HT+RH+ ATH+L G + +I++ LGHS +STT+ Y ++ ++ + + + Sbjct: 264 TPHTMRHTTATHMLEAGVPIVAIKNFLGHSSISTTERYAELSQGTVNRHIRDWNEKWFSH 323 Query: 54 DQTHPSITQKDK 65 + P +K+ Sbjct: 324 QKEEPVERKKEN 335 >gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 353 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRH+FAT L + DL +Q LGH+ L T++IYT+ + +++ + Sbjct: 295 AHMLRHTFATLLYNKSKDLVLVQESLGHASLDTSRIYTHFDKEKLSKA 342 >gi|150006223|ref|YP_001300967.1| transposase [Bacteroides vulgatus ATCC 8482] gi|149934647|gb|ABR41345.1| transposase [Bacteroides vulgatus ATCC 8482] Length = 412 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 350 HVGRHSFASLVTLEEGVPIETISRMLGHSNIQTTQIYARVTPKKLFEDMDKF 401 >gi|149923432|ref|ZP_01911836.1| putative integrase [Plesiocystis pacifica SIR-1] gi|149815684|gb|EDM75211.1| putative integrase [Plesiocystis pacifica SIR-1] Length = 81 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H LRHSFA+HL G ++ IQ +LGHS + T Y +++ Sbjct: 16 PVSVHVLRHSFASHLAMRGASIKVIQELLGHSDIKVTMRYAHLSP 60 >gi|194436337|ref|ZP_03068439.1| integrase [Escherichia coli 101-1] gi|283787274|ref|YP_003367139.1| phage integrase [Citrobacter rodentium ICC168] gi|194425065|gb|EDX41050.1| integrase [Escherichia coli 101-1] gi|282950728|emb|CBG90404.1| phage integrase [Citrobacter rodentium ICC168] Length = 334 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|327537283|gb|EGF24020.1| phage integrase family protein [Rhodopirellula baltica WH47] Length = 286 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 30/45 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + HTLRHS+ATHLL +G L+ IQ LGHS L TT +Y ++ Sbjct: 220 KVSIHTLRHSYATHLLESGVGLKVIQRYLGHSSLQTTLVYLHLTD 264 >gi|270339765|ref|ZP_06005963.2| transposase [Prevotella bergensis DSM 17361] gi|270333760|gb|EFA44546.1| transposase [Prevotella bergensis DSM 17361] Length = 131 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RHS+AT L+ G D+ ++ +LGH+ + TTQ+Y V ++ + Sbjct: 70 ITFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKKEKA 119 >gi|170023131|ref|YP_001719636.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169749665|gb|ACA67183.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 313 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRHSFA H + NGG++ +Q ILGH ++ T Y + + + Sbjct: 245 HVLRHSFAAHFMMNGGNILVLQKILGHHDINMTMRYAHFAPEHL 288 >gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129] gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae] Length = 271 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 31/47 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H +RH +AT + DLR++Q +LGH+ ++TTQIYT V+ M Sbjct: 214 TPHKIRHRYATVAYGDTYDLRAVQELLGHASVATTQIYTAVSDTSMR 260 >gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A] gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206] gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A] gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68] gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206] Length = 334 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171] gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012] gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171] gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012] gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-] gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74] Length = 334 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 325 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH FAT S G+LR++Q LGH+ ++TTQ YT V+++ + + D Sbjct: 224 SMHKLRHRFATLGYSGTGNLRAVQEALGHASVATTQRYTAVSTREVRSVADAA 276 >gi|297154638|gb|ADI04350.1| integrase family protein [Streptomyces bingchenggensis BCW-1] Length = 177 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH A+ L NG DL +IQ +LGHS ++TT Y +V R+ + + Sbjct: 110 KLTPHVLRHFCASQLYGNGLDLLAIQEVLGHSWIATTMRYIHVQQTRVEDAWAAGMERAA 169 Query: 62 QK 63 ++ Sbjct: 170 KR 171 >gi|159901555|ref|YP_001547801.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894594|gb|ABX07673.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 160 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 24/46 (52%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T HTLRHS+ATHLL G +LR IQ LGH TT +YT++ + Sbjct: 98 PATVHTLRHSWATHLLEAGINLRIIQDWLGHRSPRTTALYTHLTPQ 143 >gi|75758220|ref|ZP_00738345.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494274|gb|EAO57365.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 368 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH LRHSF T++ ++R +Q LGHS ++TTQIYT++ E+ D+ Sbjct: 314 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDE 365 >gi|327313820|ref|YP_004329257.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944777|gb|AEA20662.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 428 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 33/48 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT +L+ G + S+ +LGH+ ++TTQ+Y + +K++ Sbjct: 339 NLTFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386 >gi|288802660|ref|ZP_06408098.1| integrase [Prevotella melaninogenica D18] gi|299141691|ref|ZP_07034827.1| integrase [Prevotella oris C735] gi|288334810|gb|EFC73247.1| integrase [Prevotella melaninogenica D18] gi|298577027|gb|EFI48897.1| integrase [Prevotella oris C735] Length = 403 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 33/48 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT +L+ G + S+ +LGH+ ++TTQ+Y + +K++ Sbjct: 314 NLTFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 361 >gi|281425478|ref|ZP_06256391.1| integrase [Prevotella oris F0302] gi|281400471|gb|EFB31302.1| integrase [Prevotella oris F0302] Length = 428 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 33/48 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT +L+ G + S+ +LGH+ ++TTQ+Y + +K++ Sbjct: 339 NLTFHMARHTFATMMLTKGVPVESVSKMLGHTSITTTQLYARITNKKI 386 >gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007] Length = 334 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|228904845|ref|ZP_04068899.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|228854859|gb|EEM99463.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 365 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 34/52 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH LRHSF T++ ++R +Q LGHS ++TTQIYT++ E+ D+ Sbjct: 311 TAHILRHSFGTNVFKKTKNIRGVQEALGHSSINTTQIYTHMFEDDERELIDE 362 >gi|149911917|ref|ZP_01900516.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] gi|149805010|gb|EDM65038.1| Hypothetical bacteriophage integrase [Moritella sp. PE36] Length = 322 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGHS + T Y ++ + E Sbjct: 267 HVLRHTFASHFMMNGGNILTLQKILGHSTIMQTMTYAHLAPDYLNEAM 314 >gi|91786616|ref|YP_547568.1| phage integrase [Polaromonas sp. JS666] gi|91695841|gb|ABE42670.1| phage integrase [Polaromonas sp. JS666] Length = 331 Score = 73.8 bits (181), Expect = 8e-12, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H++RHS A+HLLS G D+ ++++ LGH+ L TT +Y ++ + + S Q Sbjct: 253 VSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQ 312 Query: 63 KDKK 66 K K Sbjct: 313 KSGK 316 >gi|90577779|ref|ZP_01233590.1| integrase/recombinase [Vibrio angustum S14] gi|90440865|gb|EAS66045.1| integrase/recombinase [Vibrio angustum S14] Length = 480 Score = 73.8 bits (181), Expect = 9e-12, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RHS AT+LL +G DL + +GHS ++TTQ Y + + Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRYDRRTDDDLKGVI 477 >gi|325268477|ref|ZP_08135107.1| integrase [Prevotella multiformis DSM 16608] gi|324989005|gb|EGC20958.1| integrase [Prevotella multiformis DSM 16608] Length = 409 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398 >gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli IHE3034] gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010] Length = 334 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNIIALQKILGHATIQQTMAYAHFAPDYLQDAV 316 >gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 304 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 39/55 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 +AHT RH+FA L NGG+L S+Q+I+GH+ LSTT+ Y ++ ++ + + + Q P Sbjct: 246 SAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVHLLTEDIQKQHRQFSP 300 >gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] Length = 386 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H RH+FA +L G D+ ++ +LGH L+TTQIY V K Sbjct: 328 NLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDKNKQNAV 379 >gi|159039274|ref|YP_001538527.1| integrase family protein [Salinispora arenicola CNS-205] gi|159039325|ref|YP_001538578.1| integrase family protein [Salinispora arenicola CNS-205] gi|157918109|gb|ABV99536.1| integrase family protein [Salinispora arenicola CNS-205] gi|157918160|gb|ABV99587.1| integrase family protein [Salinispora arenicola CNS-205] Length = 445 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 30/47 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H RH+ AT LL+ G D+R +Q +LGHS + T+ YT+V SK + Sbjct: 384 HDGRHTAATLLLAQGVDIRVVQELLGHSSIKVTEGYTHVASKLARDA 430 >gi|304384465|ref|ZP_07366866.1| integrase [Prevotella marshii DSM 16973] gi|304334444|gb|EFM00736.1| integrase [Prevotella marshii DSM 16973] Length = 409 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398 >gi|193062841|ref|ZP_03043934.1| integrase [Escherichia coli E22] gi|192931484|gb|EDV84085.1| integrase [Escherichia coli E22] Length = 337 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGHSR+ T +Y + + + + Sbjct: 267 HALRHSFATHFMINGGSIITLQRILGHSRIEQTMVYAHFAPEYLQDAV 314 >gi|313886120|ref|ZP_07819854.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332300732|ref|YP_004442653.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] gi|312924423|gb|EFR35198.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|332177795|gb|AEE13485.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 423 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 350 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 404 >gi|313886232|ref|ZP_07819961.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924303|gb|EFR35083.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 423 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 350 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 404 >gi|283785697|ref|YP_003365562.1| phage integrase [Citrobacter rodentium ICC168] gi|282949151|emb|CBG88759.1| putative phage integrase [Citrobacter rodentium ICC168] Length = 326 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 30/47 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + H LRH+FA+ + NGG++ ++Q I+GH+ + T +Y ++ + Sbjct: 266 STHVLRHTFASWFMMNGGNIIALQQIMGHASIKQTMVYAHLAPDFLQ 312 >gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] Length = 395 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+ +++ +LGHS + TTQIYT++ ++ +Q Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRAAIEQ 329 >gi|228471367|ref|ZP_04056168.1| integrase [Porphyromonas uenonis 60-3] gi|228306868|gb|EEK15981.1| integrase [Porphyromonas uenonis 60-3] Length = 423 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 350 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 404 >gi|300777311|ref|ZP_07087169.1| integrase [Chryseobacterium gleum ATCC 35910] gi|300502821|gb|EFK33961.1| integrase [Chryseobacterium gleum ATCC 35910] Length = 416 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T HT RH+F T L+ G L S+ ++GH + TTQIY + S+++ + D P Sbjct: 347 KVTFHTARHTFGTMFLTEGVPLESLSKMMGHKNILTTQIYAKITSQKISKDMDLVAPKFK 406 Query: 62 Q 62 + Sbjct: 407 E 407 >gi|224540989|ref|ZP_03681528.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] gi|224526088|gb|EEF95193.1| hypothetical protein CATMIT_00140 [Catenibacterium mitsuokai DSM 15897] Length = 335 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H RHS A H+L+ + I+ LGH +STT IY +S++ E + P + Sbjct: 255 KVHPHMFRHSKAMHMLAVDIPIVYIRDFLGHEDISTTMIYARADSRKKNEAINNLAPKLI 314 Query: 62 QKD 64 +++ Sbjct: 315 EEN 317 >gi|332800312|ref|YP_004461811.1| integrase family protein [Tepidanaerobacter sp. Re1] gi|332698047|gb|AEE92504.1| integrase family protein [Tepidanaerobacter sp. Re1] Length = 285 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 +AH LRHSF T+LL G + SIQ +LGH+ L+ T Y + + ++ + + Sbjct: 232 VSAHILRHSFGTNLLEKGASVVSIQKLLGHANLAVTTRYLHQDMNKLSDTVN 283 >gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14] gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14] Length = 365 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 35/53 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA LL G D+ +I ++LGH ++S+TQ Y ++SK+M+E + Sbjct: 311 ITFHCFRHTFAMQLLDKGVDIYTIAALLGHKQVSSTQNYAKMSSKKMIEAIVK 363 >gi|317504686|ref|ZP_07962650.1| integrase [Prevotella salivae DSM 15606] gi|315664190|gb|EFV03893.1| integrase [Prevotella salivae DSM 15606] Length = 409 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ ILGHS +S T+ Y V +++ E ++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKILGHSNVSMTERYAKVTPQKLFEEFN 396 >gi|85059870|ref|YP_455572.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84780390|dbj|BAE75167.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 329 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + NGG++ ++Q ILGHS + T +Y + + Sbjct: 270 HVLRHTFASHFMMNGGNILALQRILGHSSILQTMVYAHFAPDYL 313 >gi|254286498|ref|ZP_04961455.1| Int [Vibrio cholerae AM-19226] gi|150423447|gb|EDN15391.1| Int [Vibrio cholerae AM-19226] Length = 345 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH + N GD+ +Q ILGH ++ T Y + + +++ Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339 >gi|89073768|ref|ZP_01160282.1| integrase/recombinase [Photobacterium sp. SKA34] gi|89050543|gb|EAR56035.1| integrase/recombinase [Photobacterium sp. SKA34] Length = 480 Score = 73.4 bits (180), Expect = 9e-12, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RHS AT+LL +G DL + +GHS ++TTQ Y + + Sbjct: 427 VSPHDFRHSVATNLLRSGYDLLLVSKFMGHSSITTTQRYDRRTDDDLKGVI 477 >gi|153213639|ref|ZP_01948912.1| Int [Vibrio cholerae 1587] gi|124115838|gb|EAY34658.1| Int [Vibrio cholerae 1587] Length = 345 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH + N GD+ +Q ILGH ++ T Y + + +++ Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339 >gi|317481199|ref|ZP_07940273.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902634|gb|EFV24514.1| phage integrase [Bacteroides sp. 4_1_36] Length = 396 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV ++ ++ H Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNH 385 >gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] Length = 389 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H RHSFAT +L+ G D+ + +LGH+ ++TT IY + ++ +E Sbjct: 330 ITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKIETV 380 >gi|213648766|ref|ZP_03378819.1| site-specific recombinase, phage integrase family protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 296 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 238 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 285 >gi|293418008|ref|ZP_06660630.1| hypothetical protein ECDG_02928 [Escherichia coli B185] gi|291430726|gb|EFF03724.1| hypothetical protein ECDG_02928 [Escherichia coli B185] Length = 334 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 AH LRH+FA+H + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 268 AHVLRHTFASHFVMNGGNILALQKILGHATIQQTMAYAHFAPDYLADAMR 317 >gi|160887647|ref|ZP_02068650.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492] gi|270294572|ref|ZP_06200774.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156862858|gb|EDO56289.1| hypothetical protein BACUNI_00047 [Bacteroides uniformis ATCC 8492] gi|270276039|gb|EFA21899.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 396 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV ++ ++ H Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNVMDMTIVHDLEKNH 385 >gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG'] Length = 367 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 HTLRH+F + L+ G L ++Q + GH STT IY +++ + E Sbjct: 290 HTLRHTFCSRLVQAGVPLTTVQKLAGHKDYSTTLIYAHLSPDHLHEAV 337 >gi|307565783|ref|ZP_07628249.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345510|gb|EFN90881.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 409 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFDHF 398 >gi|288926555|ref|ZP_06420473.1| integrase [Prevotella buccae D17] gi|288336697|gb|EFC75065.1| integrase [Prevotella buccae D17] Length = 409 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFDRF 398 >gi|260590922|ref|ZP_05856380.1| integrase [Prevotella veroralis F0319] gi|260536787|gb|EEX19404.1| integrase [Prevotella veroralis F0319] Length = 434 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V K++ E D+ T K Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDKKISEDMDRLIAKQTVK 407 Query: 64 DKK 66 K+ Sbjct: 408 GKE 410 >gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] Length = 382 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FATH L+ G L S+ ++GH+ + TT+IY + ++ YD Sbjct: 329 PHLLRHTFATHALNKGMPLESLSDLMGHACIETTRIYAKNHMSKIRYEYDMY 380 >gi|17975106|ref|NP_536628.1| Int [Vibrio phage K139] gi|153820858|ref|ZP_01973525.1| Int [Vibrio cholerae B33] gi|165970235|ref|YP_001650866.1| putative integrase [Vibrio phage kappa] gi|229512070|ref|ZP_04401549.1| integrase [Vibrio cholerae B33] gi|229519206|ref|ZP_04408649.1| integrase [Vibrio cholerae RC9] gi|229607239|ref|YP_002877887.1| integrase [Vibrio cholerae MJ-1236] gi|254849315|ref|ZP_05238665.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|4530503|gb|AAD22068.1| Int [Vibrio phage K139] gi|126521650|gb|EAZ78873.1| Int [Vibrio cholerae B33] gi|165292212|dbj|BAF98794.1| putative integrase [Vibrio phage kappa] gi|229343895|gb|EEO08870.1| integrase [Vibrio cholerae RC9] gi|229352035|gb|EEO16976.1| integrase [Vibrio cholerae B33] gi|229369894|gb|ACQ60317.1| integrase [Vibrio cholerae MJ-1236] gi|254845020|gb|EET23434.1| conserved hypothetical protein [Vibrio cholerae MO10] Length = 345 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH + N GD+ +Q ILGH ++ T Y + + +++ Sbjct: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339 >gi|253700090|ref|YP_003021279.1| integrase family protein [Geobacter sp. M21] gi|251774940|gb|ACT17521.1| integrase family protein [Geobacter sp. M21] Length = 334 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 28/45 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ AT L+ G DL +++ LGHS + T+ Y ++N ++ Sbjct: 281 PHALRHTTATRLIDGGIDLYTVKEWLGHSTIQVTERYAHLNPDKL 325 >gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo] gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs] gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel] gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo] gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs] gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel] gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope] Length = 398 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH FAT +LR++Q++LGH+ ++TT+IYT V + Sbjct: 282 TMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVEDAEVRAAMMAA 334 >gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS+A+ L++ G + +Q +LGH+ ++TTQ Y ++ S+R+ E Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHETVK 354 >gi|109302897|ref|YP_654712.1| Int [Pasteurella phage F108] gi|73918061|gb|AAZ93639.1| Int [Pasteurella phage F108] Length = 340 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++ ILGHS + T Y + + Sbjct: 281 HVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMKYAHFAPSHLESAV 328 >gi|332881987|ref|ZP_08449627.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680067|gb|EGJ53024.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 215 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 151 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 203 >gi|323344353|ref|ZP_08084578.1| integrase [Prevotella oralis ATCC 33269] gi|323094480|gb|EFZ37056.1| integrase [Prevotella oralis ATCC 33269] Length = 409 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + +AH RH+FAT + L G + ++ +LGH + TT+ Y +V K++ + +++ Sbjct: 342 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHRNIQTTERYAHVTPKKLFDEFERF 398 >gi|238764997|ref|ZP_04625934.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696766|gb|EEP89546.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 334 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA+H + GG++ +Q ILGH+ + T Y + + + Q +P +T Sbjct: 280 HVLRHTFASHFMMKGGNILVLQRILGHTDIKMTMRYAHFSPEHFESAL-QYNPLVT 334 >gi|260462340|ref|ZP_05810548.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031834|gb|EEW33102.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 367 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH LS T Y ++ + + Sbjct: 254 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 300 >gi|159046238|ref|YP_001541910.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046544|ref|YP_001542214.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913997|gb|ABV95429.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157914303|gb|ABV95733.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 334 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHS A H L GD+R + LGH+ + TT++Y + + + + H + Q Sbjct: 253 VTPHVLRHSCAMHTLQATGDIRKVALWLGHASIQTTEMYLRADPTEKLALLEAHHAPLIQ 312 Query: 63 KDK 65 K Sbjct: 313 PGK 315 >gi|326336802|ref|ZP_08202957.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691030|gb|EGD33014.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 324 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 260 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 312 >gi|238786957|ref|ZP_04630757.1| Integrase [Yersinia frederiksenii ATCC 33641] gi|238724745|gb|EEQ16385.1| Integrase [Yersinia frederiksenii ATCC 33641] Length = 334 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GG++ +Q ILGHS + T Y + + Sbjct: 276 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPNHL 319 >gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 33/47 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L++NG + +Q +LGH+++ TTQ Y ++ + +++ Sbjct: 329 HDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDA 375 >gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1] gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1] Length = 379 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 33/49 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 S H LRHS+A+ L+ G ++ ++ +LGHS+++TT Y +++++ + Sbjct: 320 SVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQGLR 368 >gi|260885794|ref|ZP_05735780.2| integrase [Prevotella tannerae ATCC 51259] gi|260851599|gb|EEX71468.1| integrase [Prevotella tannerae ATCC 51259] Length = 489 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 422 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 475 >gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 361 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 32/51 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA++L+ +G D ++Q ++ HS T+ Y +++ + + + ++ Sbjct: 306 FHDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTKRYAHLSPEHIRKELEK 356 >gi|282877849|ref|ZP_06286661.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300060|gb|EFA92417.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 431 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V +++ E D+ + K Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKQSAK 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] Length = 377 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H RH+FA +L+N D+ ++ +LGHS L TTQIYT++ ++ E Sbjct: 319 ITFHCARHTFAVRMLTNDVDIYTVSKLLGHSELKTTQIYTDIIDRKRKEAM 369 >gi|315223979|ref|ZP_07865823.1| integrase [Capnocytophaga ochracea F0287] gi|314946083|gb|EFS98088.1| integrase [Capnocytophaga ochracea F0287] Length = 411 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399 >gi|256818992|ref|YP_003140271.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256580575|gb|ACU91710.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 411 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399 >gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 384 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 34/49 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 HTLRHSFA+ L++ G +L + +LGH+++ TT Y++++ + + E + Sbjct: 328 HTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSDETLAEAVN 376 >gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+ AT LL+ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 336 ITFHTARHTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 387 >gi|123441995|ref|YP_001005978.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088956|emb|CAL11767.1| P2-like phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 327 Score = 73.4 bits (180), Expect = 1e-11, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH+FA+H + NGG++ ++Q ILGHS + T Y + + + + +P T K+ Sbjct: 270 HVLRHTFASHFMMNGGNILALQKILGHSNILQTMNYAHFAPDYLEDAV-RYNPLSTCKE 327 >gi|170293805|gb|ACB12942.1| putative site specific tyrosine recombinase [Thauera sp. E7] Length = 282 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 29/41 (70%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRH+FATHLL G DL ++ +LGH LSTTQ Y ++ Sbjct: 226 HTLRHAFATHLLEAGVDLATLAKLLGHGHLSTTQRYLHLAR 266 >gi|327314455|ref|YP_004329892.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946337|gb|AEA22222.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 404 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 337 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 393 >gi|257095506|ref|YP_003169147.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048030|gb|ACV37218.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 282 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 5/54 (9%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FATHLL G DL SI +LGH LSTT Y ++ ++ HPS Sbjct: 225 HGLRHAFATHLLEAGVDLYSIGRLLGHGHLSTTSRYLHLARSKL-----TGHPS 273 >gi|299140880|ref|ZP_07034018.1| integrase [Prevotella oris C735] gi|298577846|gb|EFI49714.1| integrase [Prevotella oris C735] Length = 409 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398 >gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS+A+ L++ G + +Q +LGH+ ++TTQ Y ++ S+R+ E Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHEAVK 354 >gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] Length = 401 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 35/47 (74%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ L++NG L ++Q +LGH+++ TTQ Y ++ + ++++ Sbjct: 329 HDLRHTFASLLVNNGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDV 375 >gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 379 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T H RH+ AT +L+ G DL +I +LGH+ + TTQIY V+ +M I Sbjct: 322 VTFHVARHTHATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAI 372 >gi|213962954|ref|ZP_03391213.1| integrase [Capnocytophaga sputigena Capno] gi|213954295|gb|EEB65618.1| integrase [Capnocytophaga sputigena Capno] Length = 411 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399 >gi|210622955|ref|ZP_03293460.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275] gi|210153921|gb|EEA84927.1| hypothetical protein CLOHIR_01408 [Clostridium hiranonis DSM 13275] Length = 377 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 ++ + HT RH+ AT LL G +++ +Q+ LGH+ +STT IY + + D+ Sbjct: 311 INFSMHTFRHTHATMLLQAGANMKDVQARLGHADISTTMNIYVQDTEESKKKALDKF 367 >gi|304393998|ref|ZP_07375922.1| site-specific integrase/recombinase [Ahrensia sp. R2A130] gi|303293973|gb|EFL88349.1| site-specific integrase/recombinase [Ahrensia sp. R2A130] Length = 367 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+ AT LL + G+LR Q +LGHS +STTQ Y +V + ++ Sbjct: 289 FHDLRHTAATRLLRSTGNLRLAQMLLGHSDISTTQRYAHVQMDDLRAGMERA 340 >gi|255010477|ref|ZP_05282603.1| site-specific recombinase, phage integrase family protein [Bacteroides fragilis 3_1_12] Length = 537 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 33/50 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRH+ ATHL++ G L+ I +LGH L TT+IY V+ K + ++ D Sbjct: 481 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 530 >gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii] gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii] Length = 373 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 ++ H LRH+FAT L+ G DL +Q +LGH TQ Y + + + + Sbjct: 277 VNCHFHDLRHTFATRLVQAGVDLYKVQRLLGHKSPLMTQRYAHHYPESLRD 327 >gi|294673638|ref|YP_003574254.1| prophage PRU01 site-specific recombinase [Prevotella ruminicola 23] gi|294472192|gb|ADE81581.1| prophage PRU01, site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 381 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFAT +L+ G + ++ +LGH ++TTQIY + K + + ++ P++ Sbjct: 322 EVTCHIGRHSFATLMLTYGIPIEKVKRMLGHKNIATTQIYAKILKKNVEDSVNEILPTLR 381 >gi|126659715|ref|ZP_01730843.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] gi|126618963|gb|EAZ89704.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] Length = 370 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H RH+FAT +L G + +Q +LGH ++TT IY++V + ++ Y Q Sbjct: 310 IKAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSIATTKDIYSHVLDEMSLDAYLQ 365 >gi|332884088|gb|EGK04368.1| hypothetical protein HMPREF9456_01396 [Dysgonomonas mossii DSM 22836] Length = 410 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RH+FAT LS G + S+ +LGH+ + TTQIY + ++ D Sbjct: 343 SFHLARHTFATLTLSKGVSIESVSKMLGHTNIRTTQIYARITDSKISNDMDDF 395 >gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS+AT L++NG L IQ+++GH + TT++Y ++ E+Y + Sbjct: 206 PHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLRRELYKKF 257 >gi|261878741|ref|ZP_06005168.1| integrase [Prevotella bergensis DSM 17361] gi|270334751|gb|EFA45537.1| integrase [Prevotella bergensis DSM 17361] Length = 293 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V +++ E D+ K Sbjct: 202 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDRKISEDMDRLIAKYKAK 261 Query: 64 DK 65 DK Sbjct: 262 DK 263 >gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 420 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S + H RHS+AT ++ D+ ++ +LGH+ + TTQIY V ++ + Sbjct: 355 SISFHCFRHSYATLQFASSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKA 405 >gi|149916267|ref|ZP_01904787.1| Phage integrase [Roseobacter sp. AzwK-3b] gi|149809721|gb|EDM69573.1| Phage integrase [Roseobacter sp. AzwK-3b] Length = 390 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS+A+ L++ G + +Q +LGHS ++TTQ Y ++ S+R+ E Sbjct: 333 HDLRHSYASTLINAGVSIYEVQKLLGHSHIATTQRYAHLASERLHETVK 381 >gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 297 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + + H RH+ A+H L NG + +Q LGH L+TT Y +V + Y + Sbjct: 243 NVSPHWFRHANASHSLDNGAPISVVQQSLGHKSLATTMKYLHVKADTGTSQYLKA 297 >gi|323704109|ref|ZP_08115704.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323530929|gb|EGB20873.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 290 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H LRHS A HLL +G +L I+ ILGH+ + T++Y +S++ E ++ + Sbjct: 220 KLSCHCLRHSKAMHLLQSGVNLVYIRDILGHTSVQVTEVYARTDSRQKREAIEKAY 275 >gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] Length = 393 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTH 57 T H LRH+FA+ L G D+ + + LGHS + TT IYT+++ ++Y + H Sbjct: 317 TPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTHLD-----KLYKEKH 366 >gi|331004724|ref|ZP_08328177.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408981|gb|EGG88441.1| hypothetical protein HMPREF0491_03039 [Lachnospiraceae oral taxon 107 str. F0167] Length = 346 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHS+A L NG DL I LGHS L TT IY + +++ + ++ P Sbjct: 261 NVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 317 >gi|314938444|ref|ZP_07845733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314942723|ref|ZP_07849548.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314952531|ref|ZP_07855530.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314994043|ref|ZP_07859368.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997944|ref|ZP_07862841.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588052|gb|EFR66897.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591527|gb|EFR70372.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313595365|gb|EFR74210.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313598534|gb|EFR77379.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313642211|gb|EFS06791.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 443 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T H RH+ A+ L +G L+ +Q LGH+ + TT IYT+V + ++ + Sbjct: 368 ITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVINNF 422 >gi|312887835|ref|ZP_07747422.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299654|gb|EFQ76736.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 410 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT + LSNG + ++ ILGH++++TTQIY V +++ E + Sbjct: 346 NVTFHIARHTFATTVTLSNGVPIETVSKILGHTKITTTQIYAKVVERKLKEDMNA 400 >gi|189462460|ref|ZP_03011245.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136] gi|189430621|gb|EDU99605.1| hypothetical protein BACCOP_03148 [Bacteroides coprocola DSM 17136] Length = 413 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + ++++ E Sbjct: 341 NITFHLARHTFATTTTLSKGVPIETVSKLLGHTNIKTTQIYARITNEKIREDMK 394 >gi|307565482|ref|ZP_07627968.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345813|gb|EFN91164.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 410 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ + +Q Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEDDMEQ 393 >gi|304382835|ref|ZP_07365318.1| integrase [Prevotella marshii DSM 16973] gi|304336020|gb|EFM02267.1| integrase [Prevotella marshii DSM 16973] Length = 410 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + TAH RHSF T L G + SI ++GHS +++TQIY + +++ D+ Sbjct: 349 IPITAHLARHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKISSDMDR 403 >gi|332877744|ref|ZP_08445485.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684324|gb|EGJ57180.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 411 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399 >gi|213583107|ref|ZP_03364933.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 48 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 27/48 (56%), Positives = 38/48 (79%) Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 ATHLL++G DLR +Q +LGHS LSTTQIYT+V ++R+ +++ Q HP Sbjct: 1 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 48 >gi|315930520|gb|EFV09564.1| phage integrase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 187 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ ++ ++ Sbjct: 130 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDKLK 175 >gi|145225223|ref|YP_001135901.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315445672|ref|YP_004078551.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445685|ref|YP_004078564.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315445693|ref|YP_004078572.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315446113|ref|YP_004078992.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|145217709|gb|ABP47113.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315263975|gb|ADU00717.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263988|gb|ADU00730.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315263996|gb|ADU00738.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315264416|gb|ADU01158.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 360 Score = 73.0 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 ++ H LRH+F T + G DL +Q++LGH+ + TT Y ++ + YD Sbjct: 297 LAGHPHALRHTFGTAMAEAGVDLAVMQALLGHAHIDTTARYIHLAPTHVKAEYDAA 352 >gi|332827492|gb|EGK00238.1| hypothetical protein HMPREF9455_03377 [Dysgonomonas gadei ATCC BAA-286] Length = 448 Score = 72.6 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHSFAT + LS G + ++ +LGHS ++TTQIY + ++++ + Sbjct: 342 ITTHMARHSFATTVCLSKGVPIETVSQMLGHSCITTTQIYAKITNEKISK 391 >gi|330502011|ref|YP_004378880.1| integrase [Pseudomonas mendocina NK-01] gi|328916297|gb|AEB57128.1| integrase [Pseudomonas mendocina NK-01] Length = 330 Score = 72.6 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GGD+ +Q ILGHS ++ T Y +++ + Sbjct: 269 HILRHTFASHYMMGGGDILGLQRILGHSTITMTMRYAHLSPDHLESALR 317 >gi|313148282|ref|ZP_07810475.1| phage integrase [Bacteroides fragilis 3_1_12] gi|313137049|gb|EFR54409.1| phage integrase [Bacteroides fragilis 3_1_12] Length = 413 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 33/50 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRH+ ATHL++ G L+ I +LGH L TT+IY V+ K + ++ D Sbjct: 357 PHSLRHTCATHLINTGHSLKEIADLLGHVGLDTTRIYAKVDIKNLRKVAD 406 >gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] Length = 385 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H+LRH+ AT LL NG +++ IQ+ LGHSR++TT Y++V K + + Sbjct: 318 FPFNFHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDTYSHVTHKMQKQTVN 372 >gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto BEST195] Length = 329 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 37/53 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LRH+FA + L NG D+RS+Q I+GH+ L++T+IY + ++E Y + Sbjct: 269 SLHSLRHTFAINYLRNGSDIRSLQKIMGHADLASTEIYLDYVDDIVIEQYRKA 321 >gi|303235421|ref|ZP_07322036.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|303237463|ref|ZP_07324028.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302482283|gb|EFL45313.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302484369|gb|EFL47349.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 102 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ + K Sbjct: 19 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAK 78 Query: 64 DKK 66 +K+ Sbjct: 79 EKE 81 >gi|255693814|ref|ZP_05417489.1| integrase [Bacteroides finegoldii DSM 17565] gi|260620384|gb|EEX43255.1| integrase [Bacteroides finegoldii DSM 17565] Length = 409 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V+ KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNVRTTQIYARVSPKRLFEDMDRF 398 >gi|315638502|ref|ZP_07893679.1| phage integrase family site-specific recombinase [Campylobacter upsaliensis JV21] gi|315481493|gb|EFU72120.1| phage integrase family site-specific recombinase [Campylobacter upsaliensis JV21] Length = 355 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 32/46 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S+++ Sbjct: 298 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 343 >gi|315167303|gb|EFU11320.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX1341] Length = 377 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 S + H+ RH+ A+ L +G ++ +Q LGH+ ++TT IYT+V + D+ Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSERKAIDK 370 >gi|315223379|ref|ZP_07865237.1| integrase [Capnocytophaga ochracea F0287] gi|314946654|gb|EFS98644.1| integrase [Capnocytophaga ochracea F0287] Length = 411 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399 >gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 346 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRH+F + L+ G DLR+ Q + GH +S T Y ++ + ++ P I Sbjct: 287 NFTWHALRHTFISRLVMAGVDLRTAQELAGHKTISMTVRYAHLAPEHNQAAIEKLDPKIR 346 >gi|91215841|ref|ZP_01252810.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC 700755] gi|91185818|gb|EAS72192.1| integrase/recombinase-related protein [Psychroflexus torquis ATCC 700755] Length = 84 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 3/66 (4%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV---NSKRMMEIYDQTHPSI 60 T HTLRHSFATHL+ G LR IQ+ LGH+ TT+IYT V N+K + D + S+ Sbjct: 16 TPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAINNKTIKSPLDNMYESV 75 Query: 61 TQKDKK 66 + + K Sbjct: 76 SLDENK 81 >gi|326335397|ref|ZP_08201585.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692462|gb|EGD34413.1| integrase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 411 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T L+ G L S+ ++GH + TTQIY + ++++ + + Sbjct: 347 PISFHWARHTFGTLFLTEGVPLESVSKMMGHKNIKTTQIYAKITNEKISKDME 399 >gi|290969281|ref|ZP_06560806.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] gi|290780787|gb|EFD93390.1| site-specific recombinase, phage integrase family [Megasphaera genomosp. type_1 str. 28L] Length = 411 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H LRH+F + N +++ IQ I+GH+ + TT IY VNS + E ++ Sbjct: 351 SCHHLRHTFCSRFCENETNIKIIQEIMGHASIETTMDIYAEVNSDKKKESIEK 403 >gi|261345904|ref|ZP_05973548.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282565988|gb|EFB71523.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 329 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA H + NGG++ ++Q I+GH+ + T Y + + E Sbjct: 268 HALRHTFAAHFMMNGGNILTLQKIMGHATIQQTMTYAHFAPDYLNEAI 315 >gi|13475042|ref|NP_106602.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025789|dbj|BAB52388.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 237 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S H+LRH+ A HLL G D+ +I LGHS L+ T Y + + +Q P + Sbjct: 156 SIHPHSLRHTTAIHLLKAGVDIATISQWLGHSGLNVTMRYARADIDMKRQALEQVFPDVM 215 Query: 62 QKDKKN 67 K Sbjct: 216 SSAKDQ 221 >gi|300726813|ref|ZP_07060243.1| integrase [Prevotella bryantii B14] gi|299775926|gb|EFI72506.1| integrase [Prevotella bryantii B14] Length = 431 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V K++ E D+ + K Sbjct: 348 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDKKISEDMDRLIAKQSAK 407 Query: 64 DKK 66 +K Sbjct: 408 EKD 410 >gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] Length = 402 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+ +++ +LGHS + TTQIYT++ ++ ++ Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEE 329 >gi|317495918|ref|ZP_07954281.1| phage integrase [Gemella moribillum M424] gi|316914095|gb|EFV35578.1| phage integrase [Gemella moribillum M424] Length = 364 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H RH+ AT L +G D++ I + LGHS + TT +YT++ + ++ ++ Sbjct: 303 KISVHGFRHTHATLLYESGVDIKDISNRLGHSNIKTTLDVYTHLTEDKKKDVTEKF 358 >gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 398 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + G D+ +++ +LGHS + TTQIYT++ ++ ++ Sbjct: 277 STHKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEE 329 >gi|91790655|ref|YP_551607.1| phage integrase [Polaromonas sp. JS666] gi|91699880|gb|ABE46709.1| phage integrase [Polaromonas sp. JS666] Length = 291 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/39 (56%), Positives = 28/39 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HTLRH FATHLL +G DL +I +LGH +STT Y ++ Sbjct: 230 HTLRHCFATHLLESGVDLYTISRLLGHRHISTTSRYLHL 268 >gi|324115878|gb|EGC09806.1| phage integrase [Escherichia coli E1167] Length = 220 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H L G L+ +QS++GH +S+T++YT V Sbjct: 157 VPVTPHTFRHSYAMHRLYAGIPLKVLQSLMGHKSISSTEVYTKV 200 >gi|332829727|gb|EGK02373.1| hypothetical protein HMPREF9455_01643 [Dysgonomonas gadei ATCC BAA-286] Length = 409 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+ RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 343 PISYHSGRHSFASLITLEEGVPIETISRMLGHSNIKTTQVYARVTPKKLFEDMDKF 398 >gi|323973807|gb|EGB68981.1| phage integrase [Escherichia coli TA007] Length = 336 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 33/48 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG++ ++Q ILGH++++ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGNIITLQRILGHTKIAQTMVYAHFAPQYLQDAI 316 >gi|189010585|ref|ZP_02808040.2| resolvase [Escherichia coli O157:H7 str. EC4076] gi|189402414|ref|ZP_02782304.2| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189403253|ref|ZP_02794354.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189403269|ref|ZP_02794244.2| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189404239|ref|ZP_02787990.2| resolvase [Escherichia coli O157:H7 str. EC4501] gi|189405344|ref|ZP_02814942.2| resolvase [Escherichia coli O157:H7 str. EC869] gi|188999522|gb|EDU68508.1| resolvase [Escherichia coli O157:H7 str. EC4076] gi|189355637|gb|EDU74056.1| resolvase [Escherichia coli O157:H7 str. EC4401] gi|189361655|gb|EDU80074.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189361705|gb|EDU80124.1| resolvase [Escherichia coli O157:H7 str. EC4486] gi|189366764|gb|EDU85180.1| resolvase [Escherichia coli O157:H7 str. EC4501] gi|189370537|gb|EDU88953.1| resolvase [Escherichia coli O157:H7 str. EC869] Length = 256 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 185 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 228 >gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 275 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/38 (52%), Positives = 25/38 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI 40 T H LRH+FAT + G DLR++Q ILGH + TT I Sbjct: 230 ITPHILRHTFATTCVDKGMDLRTLQDILGHEDIKTTSI 267 >gi|120403139|ref|YP_952968.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119955957|gb|ABM12962.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 367 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 + T H LRH++AT LL G +Q +LGH+ ++TT Y ++ + + + Sbjct: 301 VEFTVHMLRHTYATDLLRRGVPAEVVQKLLGHASVTTTASTYAHLEVEDLRRVLR 355 >gi|254884944|ref|ZP_05257654.1| transposase [Bacteroides sp. 4_3_47FAA] gi|319642539|ref|ZP_07997189.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|254837737|gb|EET18046.1| transposase [Bacteroides sp. 4_3_47FAA] gi|317385891|gb|EFV66820.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 409 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398 >gi|291276943|ref|YP_003516715.1| DNA recombinase [Helicobacter mustelae 12198] gi|290964137|emb|CBG39982.1| DNA recombinase [Helicobacter mustelae 12198] Length = 354 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L T++IYT+ + + + Sbjct: 300 AHMLRHSFATLLYQKHKDLILVQETLGHASLDTSRIYTHFDKDHLYKA 347 >gi|91218172|ref|ZP_01255121.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91218500|ref|ZP_01255439.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91183331|gb|EAS69735.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] gi|91183719|gb|EAS70113.1| putative integrase/recombinase Y4QK [Psychroflexus torquis ATCC 700755] Length = 203 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 33/44 (75%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 TAHTLRHS+ATHLL +G ++ ++ +LGH+ + TT +Y V++ Sbjct: 145 TAHTLRHSYATHLLEDGLNIMCLKELLGHAHIETTIVYLQVSNS 188 >gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 388 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H+ RH+ A LL NG D+ ++ LGH + TT+IY + K+M E Sbjct: 323 ITFHSARHTNAVLLLENGADIYTVSKRLGHKEIRTTEIYAKIIDKKMKEA 372 >gi|291618731|ref|YP_003521473.1| Int [Pantoea ananatis LMG 20103] gi|291153761|gb|ADD78345.1| Int [Pantoea ananatis LMG 20103] Length = 348 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRHSF+ H + NGG++ +Q ILGH +S T Y + + + E + +P Sbjct: 280 HVLRHSFSAHFMMNGGNILVLQKILGHHDISMTMRYAHFAPEHL-ETAIKFNP 331 >gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 420 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH++AT LL+ G D+ + +LGHS ++TT IY + K+ +E + Sbjct: 361 ITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKVETVN 412 >gi|221215358|ref|ZP_03588323.1| phage integrase family protein [Burkholderia multivorans CGD1] gi|221164790|gb|EED97271.1| phage integrase family protein [Burkholderia multivorans CGD1] Length = 613 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + H RH+F T ++ L +Q +LGH+ L TT +Y KR + H + Sbjct: 550 VGVSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKRRRAEIAKYHARL 609 Query: 61 TQKD 64 + Sbjct: 610 VDQK 613 >gi|288925981|ref|ZP_06419910.1| integrase [Prevotella buccae D17] gi|288337201|gb|EFC75558.1| integrase [Prevotella buccae D17] Length = 409 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGH+ LS T+ Y V +++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNLSMTERYAKVTPQKLFEEFNRF 398 >gi|282859589|ref|ZP_06268693.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587640|gb|EFB92841.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 407 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA L+ G + S+ ILGH+ ++TTQIY V S ++ I Sbjct: 339 ISFHVSRHSFAVLALNYGMPIESVSKILGHTDIATTQIYAKVTSTKLEHDISAFESRIK 397 >gi|238029078|ref|YP_002913303.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880655|gb|ACR32983.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 608 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H+LRH+F T +++G L +Q +LGH+ L TT +Y +R + H ++T Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFHAALTG 605 Query: 63 KD 64 K Sbjct: 606 KS 607 >gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+ T LL+ G DL +I+ I GH +S+T+IY +V + + + HP Sbjct: 245 TVHKLRHTCFTMLLNAGVDLPTIKDIAGHENISSTEIYVHVTQREIRSAMAK-HP 298 >gi|223369866|gb|ACM88801.1| integrase [uncultured bacterium] Length = 163 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 28/41 (68%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTL HSFATHLL N D+R Q +LGH +S T YT+V Sbjct: 122 SCHTLPHSFATHLLENAYDIRPGQDLLGHKNVSPTLFYTHV 162 >gi|83956466|ref|ZP_00964886.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1] gi|83839321|gb|EAP78509.1| putative integrase/recombinase [Sulfitobacter sp. NAS-14.1] Length = 329 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHS A H+L D+R + LGH+ L +T+IY + +E+ D P Sbjct: 252 SITPHVLRHSCAMHMLQATRDIRKVALWLGHATLQSTEIYLRADPTEKLEMLDALAPLGI 311 Query: 62 QKDK 65 + K Sbjct: 312 KPGK 315 >gi|91206303|ref|YP_538657.1| resolvase [Escherichia coli UTI89] gi|91075754|gb|ABE10634.1| resolvase [Escherichia coli UTI89] Length = 269 Score = 72.6 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS A H+L G L+ +QS++GH +S+T++YT V Sbjct: 197 VPVTPHTFRHSDAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 240 >gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium botulinum A str. Hall] gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] Length = 379 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H+LRH+ AT LL G +++ IQ LGHS++STT Y++V + ++ ++ Sbjct: 315 IPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLKLDSVNRF 371 >gi|13476425|ref|NP_107995.1| integrase [Mesorhizobium loti MAFF303099] gi|14027186|dbj|BAB54140.1| integrase [Mesorhizobium loti MAFF303099] Length = 359 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH LS T Y ++ + + Sbjct: 258 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 304 >gi|300714681|ref|YP_003739484.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] gi|299060517|emb|CAX57624.1| Site-specific recombinase, phage integrase family [Erwinia billingiae Eb661] Length = 335 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ +++ ILGHS++ T IY + + Sbjct: 269 HVLRHTFASHFMMNGGNIITLRDILGHSKIEQTMIYAHFAPDFLQHAV 316 >gi|238922505|ref|YP_002936018.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC 33656] gi|238874177|gb|ACR73884.1| integrase/recombinase, XerC/CodV family [Eubacterium rectale ATCC 33656] Length = 411 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H RH+FA+ N +++ IQ ++GH+ +STT IY N + ++ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403 >gi|154492801|ref|ZP_02032427.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC 43184] gi|154087106|gb|EDN86151.1| hypothetical protein PARMER_02440 [Parabacteroides merdae ATCC 43184] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + +AH RH+FAT + L G + ++ +LGHS + TT+ Y +V K++ + + + Sbjct: 342 IPLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFGRF 398 >gi|306812751|ref|ZP_07446944.1| integrase family protein [Escherichia coli NC101] gi|305853514|gb|EFM53953.1| integrase family protein [Escherichia coli NC101] Length = 350 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+F H + +GG++ ++Q ILGH + T Y ++ + E + +P T Sbjct: 281 HVLRHTFTAHFMMSGGNILALQKILGHHDIKMTMRYAHLAPDHL-ETALRFNPLAT 335 >gi|237714130|ref|ZP_04544611.1| transposase [Bacteroides sp. D1] gi|262407180|ref|ZP_06083729.1| transposase [Bacteroides sp. 2_1_22] gi|294646950|ref|ZP_06724569.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809675|ref|ZP_06768364.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445954|gb|EEO51745.1| transposase [Bacteroides sp. D1] gi|262355883|gb|EEZ04974.1| transposase [Bacteroides sp. 2_1_22] gi|292637720|gb|EFF56119.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443099|gb|EFG11877.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398 >gi|57242638|ref|ZP_00370575.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195] gi|57016567|gb|EAL53351.1| integrase/recombinase (xerC) [Campylobacter upsaliensis RM3195] Length = 354 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 32/46 (69%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S+++ Sbjct: 297 AHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDSEKLK 342 >gi|332885867|gb|EGK06113.1| hypothetical protein HMPREF9456_02377 [Dysgonomonas mossii DSM 22836] Length = 406 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H RHSF T +LS G + SI ++GH+ +S+TQIY+ V ++ E D+ Sbjct: 335 NLSYHMSRHSFGTLMLSAGIPIESISKMMGHTNISSTQIYSKVTDDKISEDMDK 388 >gi|315641029|ref|ZP_07896112.1| integrase/recombinase [Enterococcus italicus DSM 15952] gi|315483198|gb|EFU73711.1| integrase/recombinase [Enterococcus italicus DSM 15952] Length = 325 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H+ RH FA L+ NG D+ IQ +LGH+ + TT++Y Sbjct: 263 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 305 >gi|317057903|ref|YP_004106370.1| integrase family protein [Ruminococcus albus 7] gi|315450172|gb|ADU23736.1| integrase family protein [Ruminococcus albus 7] Length = 324 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55 H LRH+FAT LL G D++ + ILGHS +S T Y +V ++ + Sbjct: 269 HALRHTFATLLLRQGTDIKVVSEILGHSDISITMKFYYHVIEEQKKTAMTK 319 >gi|29347338|ref|NP_810841.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|167762412|ref|ZP_02434539.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC 43183] gi|237723042|ref|ZP_04553523.1| transposase [Bacteroides sp. 2_2_4] gi|253570441|ref|ZP_04847849.1| transposase [Bacteroides sp. 1_1_6] gi|265764111|ref|ZP_06092679.1| transposase [Bacteroides sp. 2_1_16] gi|293372587|ref|ZP_06618969.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|299148364|ref|ZP_07041426.1| integrase [Bacteroides sp. 3_1_23] gi|317479065|ref|ZP_07938206.1| phage integrase [Bacteroides sp. 4_1_36] gi|29339238|gb|AAO77035.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|167699518|gb|EDS16097.1| hypothetical protein BACSTE_00766 [Bacteroides stercoris ATCC 43183] gi|229447564|gb|EEO53355.1| transposase [Bacteroides sp. 2_2_4] gi|251839390|gb|EES67473.1| transposase [Bacteroides sp. 1_1_6] gi|263256719|gb|EEZ28065.1| transposase [Bacteroides sp. 2_1_16] gi|291515084|emb|CBK64294.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] gi|292632396|gb|EFF50992.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|298513125|gb|EFI37012.1| integrase [Bacteroides sp. 3_1_23] gi|301162793|emb|CBW22340.1| putative phage integrase [Bacteroides fragilis 638R] gi|316904721|gb|EFV26534.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398 >gi|10955295|ref|NP_052636.1| resolvase [Escherichia coli O157:H7 str. Sakai] gi|75994510|ref|YP_325624.1| resolvase [Escherichia coli O157:H7 EDL933] gi|149930783|ref|YP_001294712.1| w0048 [Escherichia coli] gi|168803077|ref|ZP_02828084.1| resolvase [Escherichia coli O157:H7 str. EC508] gi|208811330|ref|ZP_03253090.1| resolvase [Escherichia coli O157:H7 str. EC4206] gi|208817399|ref|ZP_03258428.1| resolvase [Escherichia coli O157:H7 str. EC4045] gi|208823403|ref|ZP_03263720.1| resolvase [Escherichia coli O157:H7 str. EC4042] gi|209395611|ref|YP_002268421.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|217329834|ref|ZP_03445909.1| resolvase [Escherichia coli O157:H7 str. TW14588] gi|254667484|ref|YP_003082170.1| resolvase [Escherichia coli O157:H7 str. TW14359] gi|261225662|ref|ZP_05939943.1| resolvase [Escherichia coli O157:H7 str. FRIK2000] gi|261257882|ref|ZP_05950415.1| resolvase [Escherichia coli O157:H7 str. FRIK966] gi|37695771|gb|AAR00433.1|AF401292_34 w0048 [Escherichia coli] gi|3337027|dbj|BAA31786.1| resolvase [Escherichia coli O157:H7 str. Sakai] gi|3822178|gb|AAC70132.1| resolvase (protein d) [Escherichia coli O157:H7] gi|17384578|emb|CAC79982.1| orf807 [Escherichia coli] gi|189375194|gb|EDU93610.1| resolvase [Escherichia coli O157:H7 str. EC508] gi|208729960|gb|EDZ79177.1| resolvase [Escherichia coli O157:H7 str. EC4206] gi|208730576|gb|EDZ79275.1| resolvase [Escherichia coli O157:H7 str. EC4045] gi|208736998|gb|EDZ84683.1| resolvase [Escherichia coli O157:H7 str. EC4042] gi|209157066|gb|ACI34500.1| resolvase [Escherichia coli O157:H7 str. EC4115] gi|217317065|gb|EEC25498.1| resolvase [Escherichia coli O157:H7 str. TW14588] gi|254595836|gb|ACT75196.1| resolvase [Escherichia coli O157:H7 str. TW14359] Length = 268 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 197 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 240 >gi|307565175|ref|ZP_07627678.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346119|gb|EFN91453.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 247 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ +K Sbjct: 156 SYHMARHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDRLIAKHQEK 215 Query: 64 DKKN 67 +K+N Sbjct: 216 NKEN 219 >gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 331 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H LRH+ AT + +G D +++ ILGH + TT+IYT+++ ++ + + +P Sbjct: 262 STHKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQRQDAIE-HNPLANV 320 Query: 63 KD 64 K+ Sbjct: 321 KN 322 >gi|187776297|ref|ZP_02801730.2| resolvase [Escherichia coli O157:H7 str. EC4196] gi|188025300|ref|ZP_02777528.2| resolvase [Escherichia coli O157:H7 str. EC4113] gi|187767942|gb|EDU31786.1| resolvase [Escherichia coli O157:H7 str. EC4196] gi|188013658|gb|EDU51780.1| resolvase [Escherichia coli O157:H7 str. EC4113] Length = 252 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 181 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 224 >gi|160888483|ref|ZP_02069486.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492] gi|298374441|ref|ZP_06984399.1| integrase [Bacteroides sp. 3_1_19] gi|156862160|gb|EDO55591.1| hypothetical protein BACUNI_00900 [Bacteroides uniformis ATCC 8492] gi|298268809|gb|EFI10464.1| integrase [Bacteroides sp. 3_1_19] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 398 >gi|163815709|ref|ZP_02207081.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759] gi|158449014|gb|EDP26009.1| hypothetical protein COPEUT_01890 [Coprococcus eutactus ATCC 27759] Length = 411 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H RH+FA+ N +++ IQ ++GH+ +STT IY N + ++ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403 >gi|29349430|ref|NP_812933.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341339|gb|AAO79127.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398 >gi|301062646|ref|ZP_07203274.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300443257|gb|EFK07394.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 359 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FAT+ + D+R +Q ILGH + TTQ YT+V ++ + I + Sbjct: 293 FHDLRHTFATYAMVKSKDIRGVQEILGHKNIQTTQKYTHVLAREKVNIVN 342 >gi|240146617|ref|ZP_04745218.1| phage integrase [Roseburia intestinalis L1-82] gi|257201240|gb|EEU99524.1| phage integrase [Roseburia intestinalis L1-82] Length = 398 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H LRH++AT + G + +Q +LGH+ + TT Y +V + + + Q Sbjct: 336 HALRHTYATRAIERGVQPKVLQQLLGHASIKTTMDRYVHVTDESLAKAVQQF 387 >gi|210610569|ref|ZP_03288495.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787] gi|210152428|gb|EEA83434.1| hypothetical protein CLONEX_00685 [Clostridium nexile DSM 1787] Length = 411 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H RH+FA+ N +++ IQ ++GH+ +STT IY N + ++ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403 >gi|160890418|ref|ZP_02071421.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492] gi|156860150|gb|EDO53581.1| hypothetical protein BACUNI_02860 [Bacteroides uniformis ATCC 8492] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398 >gi|53714292|ref|YP_100284.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52217157|dbj|BAD49750.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 398 >gi|191168019|ref|ZP_03029820.1| integrase [Escherichia coli B7A] gi|190901957|gb|EDV61705.1| integrase [Escherichia coli B7A] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|9630357|ref|NP_046786.1| Int [Enterobacteria phage P2] gi|117624294|ref|YP_853207.1| putative phage integrase [Escherichia coli APEC O1] gi|168750144|ref|ZP_02775166.1| integrase [Escherichia coli O157:H7 str. EC4113] gi|168756346|ref|ZP_02781353.1| integrase [Escherichia coli O157:H7 str. EC4401] gi|168770061|ref|ZP_02795068.1| integrase [Escherichia coli O157:H7 str. EC4486] gi|168775961|ref|ZP_02800968.1| integrase [Escherichia coli O157:H7 str. EC4196] gi|168782415|ref|ZP_02807422.1| integrase [Escherichia coli O157:H7 str. EC4076] gi|168798987|ref|ZP_02823994.1| integrase [Escherichia coli O157:H7 str. EC508] gi|195937855|ref|ZP_03083237.1| putative phage integrase [Escherichia coli O157:H7 str. EC4024] gi|208807655|ref|ZP_03249992.1| integrase [Escherichia coli O157:H7 str. EC4206] gi|208813905|ref|ZP_03255234.1| integrase [Escherichia coli O157:H7 str. EC4045] gi|208818402|ref|ZP_03258722.1| integrase [Escherichia coli O157:H7 str. EC4042] gi|209400896|ref|YP_002271366.1| integrase [Escherichia coli O157:H7 str. EC4115] gi|254793910|ref|YP_003078747.1| integrase [Escherichia coli O157:H7 str. TW14359] gi|307314933|ref|ZP_07594523.1| integrase family protein [Escherichia coli W] gi|6136261|sp|P36932|VINT_BPP2 RecName: Full=Integrase gi|3139116|gb|AAD03297.1| Int [Enterobacteria phage P2] gi|115513418|gb|ABJ01493.1| putative phage integrase [Escherichia coli APEC O1] gi|187768624|gb|EDU32468.1| integrase [Escherichia coli O157:H7 str. EC4196] gi|188015634|gb|EDU53756.1| integrase [Escherichia coli O157:H7 str. EC4113] gi|189000073|gb|EDU69059.1| integrase [Escherichia coli O157:H7 str. EC4076] gi|189356536|gb|EDU74955.1| integrase [Escherichia coli O157:H7 str. EC4401] gi|189360964|gb|EDU79383.1| integrase [Escherichia coli O157:H7 str. EC4486] gi|189378536|gb|EDU96952.1| integrase [Escherichia coli O157:H7 str. EC508] gi|208727456|gb|EDZ77057.1| integrase [Escherichia coli O157:H7 str. EC4206] gi|208735182|gb|EDZ83869.1| integrase [Escherichia coli O157:H7 str. EC4045] gi|208738525|gb|EDZ86207.1| integrase [Escherichia coli O157:H7 str. EC4042] gi|209162296|gb|ACI39729.1| integrase [Escherichia coli O157:H7 str. EC4115] gi|254593310|gb|ACT72671.1| integrase [Escherichia coli O157:H7 str. TW14359] gi|306905639|gb|EFN36169.1| integrase family protein [Escherichia coli W] gi|315061400|gb|ADT75727.1| putative phage integrase [Escherichia coli W] gi|323378021|gb|ADX50289.1| integrase family protein [Escherichia coli KO11] gi|323951882|gb|EGB47756.1| phage integrase [Escherichia coli H252] gi|323961683|gb|EGB57287.1| phage integrase [Escherichia coli H489] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|323936701|gb|EGB32986.1| phage integrase [Escherichia coli E1520] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15] gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15] Length = 313 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H+ RH FA L+ NG D+ IQ +LGH+ + TT++Y Sbjct: 251 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 293 >gi|283795778|ref|ZP_06344931.1| putative transposase [Clostridium sp. M62/1] gi|291076409|gb|EFE13773.1| putative transposase [Clostridium sp. M62/1] Length = 411 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H RH+FA+ N +++ IQ ++GH+ +STT IY N + ++ Sbjct: 351 SCHIFRHTFASRFCENETNIKVIQEVMGHADVSTTMNIYAEANPDVTKSVIEK 403 >gi|332088977|gb|EGI94089.1| integrase [Shigella boydii 5216-82] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|300923563|ref|ZP_07139594.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] gi|300420171|gb|EFK03482.1| site-specific recombinase, phage integrase family [Escherichia coli MS 182-1] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|257891971|ref|ZP_05671624.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828331|gb|EEV54957.1| phage integrase [Enterococcus faecium 1,231,410] Length = 344 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T H RH+ A+ L +G L+ +Q LGH+ + TT IYT+V + ++ + Sbjct: 269 ITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVINNF 323 >gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQ 62 H+LRH+ AT LL G +++ IQ LGHS+L+TT +Y++V K + +I + Sbjct: 323 FHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTKKMSQDSVRLFEEAIKK 381 >gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 286 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H LRHSFAT L+ L IQ +LGHS L T +Y + + +++ + + Sbjct: 232 NVSCHILRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVYMHADLEQLQDAVNA 285 >gi|168789050|ref|ZP_02814057.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261225024|ref|ZP_05939305.1| integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261257629|ref|ZP_05950162.1| integrase [Escherichia coli O157:H7 str. FRIK966] gi|331678036|ref|ZP_08378711.1| integrase [Escherichia coli H591] gi|189371222|gb|EDU89638.1| integrase [Escherichia coli O157:H7 str. EC869] gi|320172729|gb|EFW47964.1| Integrase [Shigella dysenteriae CDC 74-1112] gi|323944901|gb|EGB40966.1| phage integrase [Escherichia coli H120] gi|324118070|gb|EGC11969.1| phage integrase [Escherichia coli E1167] gi|331074496|gb|EGI45816.1| integrase [Escherichia coli H591] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|300901301|ref|ZP_07119398.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|300355266|gb|EFJ71136.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|303236450|ref|ZP_07323037.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483301|gb|EFL46309.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 404 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E +D+ Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTECYAKVTPQKLFEEFDRF 393 >gi|255009533|ref|ZP_05281659.1| integrase [Bacteroides fragilis 3_1_12] gi|313147308|ref|ZP_07809501.1| integrase [Bacteroides fragilis 3_1_12] gi|313136075|gb|EFR53435.1| integrase [Bacteroides fragilis 3_1_12] Length = 372 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----IT 366 Query: 62 QKDKK 66 K KK Sbjct: 367 LKRKK 371 >gi|198282468|ref|YP_002218789.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198282805|ref|YP_002219126.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198284132|ref|YP_002220453.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666115|ref|YP_002425003.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218666952|ref|YP_002425321.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218667875|ref|YP_002426786.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246989|gb|ACH82582.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247326|gb|ACH82919.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248653|gb|ACH84246.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518328|gb|ACK78914.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519165|gb|ACK79751.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520088|gb|ACK80674.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 332 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H +RHS ATHLL G D+ ++++ LGH L+TT IY + + P Sbjct: 253 VSPHVIRHSTATHLLRAGVDINTVRAWLGHVSLTTTNIYAETDLETKTRALATCAP 308 >gi|325300611|ref|YP_004260528.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324320164|gb|ADY38055.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 410 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT +LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 341 TYHLARHTFATMMLSKGVPVESVSKMLGHANIKTTQIYARITNKKI 386 >gi|223369826|gb|ACM88782.1| integrase [uncultured bacterium] Length = 163 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 25/42 (59%), Positives = 32/42 (76%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 T HTLRHSFA HLL++G ++R+IQ +L H L TT IYT+V Sbjct: 121 ATVHTLRHSFARHLLAHGTEIRTIQLLLEHRSLQTTMIYTHV 162 >gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 275 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+FAT+LL+ G DL+ I +GH+ L+TT+IY + S+ Y Sbjct: 221 HPHCCRHTFATNLLARGADLQFIADEMGHADLNTTRIYAQIPSEDKRLKYQN 272 >gi|332884391|gb|EGK04654.1| hypothetical protein HMPREF9456_03396 [Dysgonomonas mossii DSM 22836] Length = 336 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS A HLL G + I+ LGH + TT+IY ++ + ++ +++ P Sbjct: 256 KITPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFP 312 >gi|288958732|ref|YP_003449073.1| integrase [Azospirillum sp. B510] gi|288911040|dbj|BAI72529.1| integrase [Azospirillum sp. B510] Length = 301 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+ L+ G DL +++ +LGHS + T Y ++ + + Sbjct: 246 HDLRHTFASKLVMAGVDLNTVRELLGHSDIKMTLRYAHLAPEHKAAAVAK 295 >gi|254162098|ref|YP_003045206.1| integrase [Escherichia coli B str. REL606] gi|253973999|gb|ACT39670.1| integrase [Escherichia coli B str. REL606] Length = 337 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 316 >gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657] gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657] Length = 330 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT +++G L +Q I+GH STTQ+Y ++ + + Y + Sbjct: 275 SVYPHLFRHSFATCKINSGMPLPVLQHIMGHESPSTTQVYAQLSEENIKYEYKK 328 >gi|150007153|ref|YP_001301896.1| integrase [Parabacteroides distasonis ATCC 8503] gi|255015232|ref|ZP_05287358.1| integrase [Bacteroides sp. 2_1_7] gi|256840529|ref|ZP_05546037.1| integrase [Parabacteroides sp. D13] gi|298377579|ref|ZP_06987531.1| integrase [Bacteroides sp. 3_1_19] gi|149935577|gb|ABR42274.1| integrase [Parabacteroides distasonis ATCC 8503] gi|256737801|gb|EEU51127.1| integrase [Parabacteroides sp. D13] gi|298265598|gb|EFI07259.1| integrase [Bacteroides sp. 3_1_19] Length = 392 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ AT LL NG ++ ++Q +LGH + TT+IY+N+ ++ ++ Sbjct: 331 KVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNIMDMTIVRDLEK 384 >gi|262381150|ref|ZP_06074288.1| integrase [Bacteroides sp. 2_1_33B] gi|301311180|ref|ZP_07217108.1| integrase protein [Bacteroides sp. 20_3] gi|262296327|gb|EEY84257.1| integrase [Bacteroides sp. 2_1_33B] gi|300830754|gb|EFK61396.1| integrase protein [Bacteroides sp. 20_3] Length = 392 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ AT LL NG ++ ++Q +LGH + TT+IY+N+ ++ ++ Sbjct: 331 KVSFHTARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSNIMDMTIVRDLEK 384 >gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 291 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/44 (54%), Positives = 30/44 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHS+ATHLL G +LR IQ LGH+ +TT YT++ Sbjct: 230 ATVHTLRHSWATHLLEAGVNLRIIQGWLGHTSPTTTAHYTHLTQ 273 >gi|298373374|ref|ZP_06983363.1| integrase [Bacteroidetes oral taxon 274 str. F0058] gi|298274426|gb|EFI15978.1| integrase [Bacteroidetes oral taxon 274 str. F0058] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E ++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396 >gi|294619699|ref|ZP_06699115.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679] gi|291594082|gb|EFF25540.1| prophage Lp3 protein 1, integrase [Enterococcus faecium E1679] Length = 401 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T H RH+ A+ L +G L+ +Q LGH+ + TT IYT+V + ++ + Sbjct: 326 ITTHGFRHTHASLLFESGASLKDVQERLGHADIQTTSNIYTHVTETQNKKVINNF 380 >gi|325856041|ref|ZP_08171930.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483713|gb|EGC86677.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 340 NLTFHMARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|325857601|ref|ZP_08172537.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483107|gb|EGC86089.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V ++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFER 397 >gi|319784519|ref|YP_004143995.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170407|gb|ADV13945.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 364 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH LS T Y ++ + + Sbjct: 255 VVPHILRHTCASRLVQGGIDIRRVQMWLGHQTLSMTMRYAHLATNDL 301 >gi|260593258|ref|ZP_05858716.1| integrase [Prevotella veroralis F0319] gi|260534815|gb|EEX17432.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T+HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 342 FPFTSHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVTPQKLFEEFNRF 398 >gi|226326688|ref|ZP_03802206.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198] gi|225204909|gb|EEG87263.1| hypothetical protein PROPEN_00541 [Proteus penneri ATCC 35198] Length = 49 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 35/48 (72%) Query: 17 LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 + + GDLR++Q +LGH+ LSTTQ+YT+++ + + ++YD HP ++ Sbjct: 1 MESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAAHPRAKREK 48 >gi|168822428|ref|ZP_02834428.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341168|gb|EDZ27932.1| gp27 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 349 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+F H + NGG++ +Q ILGH+ + T Y + + + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFAPDHLEQAV 331 >gi|327314345|ref|YP_004329782.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946202|gb|AEA22087.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 408 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|293373745|ref|ZP_06620092.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631400|gb|EFF50031.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 423 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RHSFAT + LSNG + ++ S+LGH + TTQ+Y + +++ + ++ Sbjct: 341 PLSWHMSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEK 395 >gi|238753441|ref|ZP_04614804.1| Integrase family protein [Yersinia ruckeri ATCC 29473] gi|238708394|gb|EEQ00749.1| Integrase family protein [Yersinia ruckeri ATCC 29473] Length = 154 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ +Q ILGHS + T Y ++ + + Sbjct: 86 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHLAPEHL 129 >gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 400 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH++AT L NG L+ IQ +LGHS + T IYT+V K + D Sbjct: 344 FHALRHTYATRLFENGVSLKVIQVLLGHSSMDITANIYTHVLPKEKIRAVD 394 >gi|325859510|ref|ZP_08172652.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325482978|gb|EGC85969.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 341 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHS A HLL +L I+ LGHS ++TT++Y + K E + +P I + Sbjct: 261 CHALRHSKAIHLLEANVNLVWIRDFLGHSSVTTTEVYARASDKMKKEALAKLNPGIIIEG 320 Query: 65 K 65 K Sbjct: 321 K 321 >gi|149911868|ref|ZP_01900469.1| Integrase [Moritella sp. PE36] gi|149805073|gb|EDM65098.1| Integrase [Moritella sp. PE36] Length = 341 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA++ + NGG++ +Q ILGH+ + T Y++ + + +P + Sbjct: 285 HILRHTFASYFMMNGGNILVLQKILGHADIKQTMAYSHFAPSHLQDAVL-FNPLAS 339 >gi|91775667|ref|YP_545423.1| phage integrase [Methylobacillus flagellatus KT] gi|91709654|gb|ABE49582.1| phage integrase [Methylobacillus flagellatus KT] Length = 121 Score = 72.2 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+H + NGG++ +Q +LGHS L+ T Y ++ + E Sbjct: 63 HVLRHTFASHFMMNGGNILVLQRLLGHSTLTMTMRYAHMAPDHLQEA 109 >gi|323183907|gb|EFZ69298.1| integrase [Escherichia coli 1357] Length = 321 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 257 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 304 >gi|261883696|ref|ZP_06007735.1| phage integrase family site specific recombinase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 171 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 114 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLK 159 >gi|315608671|ref|ZP_07883651.1| integrase [Prevotella buccae ATCC 33574] gi|315249640|gb|EFU29649.1| integrase [Prevotella buccae ATCC 33574] Length = 409 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGH+ + T+ Y V +++ E +D+ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVCMTERYAKVTPQKLFEEFDRF 398 >gi|260174248|ref|ZP_05760660.1| integrase protein [Bacteroides sp. D2] gi|315922519|ref|ZP_07918759.1| integrase [Bacteroides sp. D2] gi|313696394|gb|EFS33229.1| integrase [Bacteroides sp. D2] Length = 390 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp. 3_1_40A] gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 401 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++A+ L G D+ ++Q +L H +STTQIY + + E D+ Sbjct: 316 ITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368 >gi|303237761|ref|ZP_07324320.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482047|gb|EFL45083.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1] gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1] Length = 292 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRH+ AT L +G +LR IQ +LGH+ TT Y V +++++ Sbjct: 231 IPLHPHKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQLVKA 282 >gi|260912329|ref|ZP_05918879.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260633556|gb|EEX51696.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 410 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 323 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RH+FA L NGGD ++ +LGH+ +ST IY + S + + Y P Sbjct: 258 SPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLRLFSDDLAKKYQGKSP 312 >gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 281 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RHSFAT +++G L +Q I+GH +TTQIY ++ + + Y + Sbjct: 226 SIYPHLFRHSFATGKINSGMPLPVLQHIMGHENPATTQIYAELSEENIKHEYKK 279 >gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7] gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 401 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++A+ L G D+ ++Q +L H +STTQIY + + E D+ Sbjct: 316 ITFHCFRHTYASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADR 368 >gi|301159218|emb|CBW18733.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323131006|gb|ADX18436.1| gp27 phage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 349 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+F H + NGG++ +Q ILGH+ + T Y + + + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFAPDHLEQAV 331 >gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B] gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B] Length = 403 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RHSFAT +S G + S+ +LGH+ + TTQIY + ++ E D Sbjct: 341 ITFHVARHSFATLSISYGVPIESVSKMLGHTNIRTTQIYAKIIDTKLSEDMD 392 >gi|255008616|ref|ZP_05280742.1| integrase [Bacteroides fragilis 3_1_12] gi|313146347|ref|ZP_07808540.1| integrase [Bacteroides fragilis 3_1_12] gi|313135114|gb|EFR52474.1| integrase [Bacteroides fragilis 3_1_12] Length = 409 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398 >gi|325854096|ref|ZP_08171486.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484207|gb|EGC87139.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 410 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|322420262|ref|YP_004199485.1| integrase family protein [Geobacter sp. M18] gi|320126649|gb|ADW14209.1| integrase family protein [Geobacter sp. M18] Length = 340 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTH 57 H LRH+ AT L++ G DL ++ LGHS + T+ Y ++ ++ + + H Sbjct: 282 HALRHTCATRLVNKGVDLYVVKEWLGHSSIQVTERYAHLAPDKLAHAAAVLEMYH 336 >gi|116052949|ref|YP_793266.1| bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115588170|gb|ABJ14185.1| possible bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 126 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ + Q ILGHS L+ T Y ++ + E+ Sbjct: 59 HVLRHTFASHFMMNGGNILTRQKILGHSSLTLTMRYAHLAPDFLQEVIR 107 >gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T HT RHS A LL+ G D+ ++ ILGH + +TQ+Y + K+ + Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRSTQVYAKIVDKKKDDAI 373 >gi|160885083|ref|ZP_02066086.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|293371572|ref|ZP_06617989.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|156109433|gb|EDO11178.1| hypothetical protein BACOVA_03081 [Bacteroides ovatus ATCC 8483] gi|292633455|gb|EFF52021.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 390 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|329768225|ref|ZP_08259726.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341] gi|328837424|gb|EGF87053.1| hypothetical protein HMPREF0428_01423 [Gemella haemolysans M341] Length = 365 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T H RH+ AT L +G D++ I + LGHS + TT IYT++ + ++ D+ Sbjct: 305 ITLHGFRHTHATLLYESGIDVKDISNRLGHSNIKTTLDIYTHLTEDKKKDVTDKF 359 >gi|221198844|ref|ZP_03571889.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221205104|ref|ZP_03578120.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221174895|gb|EEE07326.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221181295|gb|EEE13697.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 613 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H RH+F T ++ L +Q +LGH+ L TT +Y KR + H + Sbjct: 552 VSPHAFRHTFGTQSVATDVPLDVVQQLLGHASLQTTSVYVTAEEKRRRAEIAKYHARLVD 611 Query: 63 KD 64 + Sbjct: 612 QK 613 >gi|313885888|ref|ZP_07819628.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312924643|gb|EFR35412.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 414 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 341 NLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 395 >gi|225389817|ref|ZP_03759541.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme DSM 15981] gi|225044127|gb|EEG54373.1| hypothetical protein CLOSTASPAR_03565 [Clostridium asparagiforme DSM 15981] Length = 409 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 + H LRH+F T L D++ IQ ++GH+ STT IYT++ + M E Sbjct: 349 SVHNLRHTFCTRLCEKTNDIKFIQQVMGHADFSTTMDIYTHITQESMKE 397 >gi|255972569|ref|ZP_05423155.1| predicted protein [Enterococcus faecalis T1] gi|256762723|ref|ZP_05503303.1| integrase [Enterococcus faecalis T3] gi|257422396|ref|ZP_05599386.1| predicted protein [Enterococcus faecalis X98] gi|255963587|gb|EET96063.1| predicted protein [Enterococcus faecalis T1] gi|256683974|gb|EEU23669.1| integrase [Enterococcus faecalis T3] gi|257164220|gb|EEU94180.1| predicted protein [Enterococcus faecalis X98] Length = 377 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 S + H+ RH+ A+ L +G ++ +Q LGH+ ++TT IYT+V + D+ Sbjct: 316 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSERKAIDK 370 >gi|87308618|ref|ZP_01090758.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Blastopirellula marina DSM 3645] gi|87288710|gb|EAQ80604.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Blastopirellula marina DSM 3645] Length = 67 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 30/45 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 TAHT RHSFATHL+ D+R++Q +L H TT IYT V ++ Sbjct: 11 VTAHTFRHSFATHLIEVAYDIRTVQELLVHRDFRTTMIYTPVLNQ 55 >gi|195940604|ref|ZP_03085986.1| resolvase [Escherichia coli O157:H7 str. EC4024] Length = 241 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+ ++YT V Sbjct: 170 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSKEVYTKV 213 >gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 293 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 31/45 (68%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 + H+LRHSFATHLL +G L I+ +LGH+ + +T +Y ++ + Sbjct: 225 EVSIHSLRHSFATHLLEDGVSLLQIKELLGHASIRSTTVYLHLAN 269 >gi|327314473|ref|YP_004329910.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326946304|gb|AEA22189.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 409 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398 >gi|288926827|ref|ZP_06420735.1| integrase [Prevotella buccae D17] gi|288336399|gb|EFC74777.1| integrase [Prevotella buccae D17] Length = 407 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + S+ +LGH+ L TTQIY + +K++ Sbjct: 340 NLTFHMARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387 >gi|299147785|ref|ZP_07040848.1| integrase protein [Bacteroides sp. 3_1_23] gi|298513968|gb|EFI37854.1| integrase protein [Bacteroides sp. 3_1_23] Length = 390 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL NG ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYNGANITTVQKLLGHKSVKTTQVYANI 373 >gi|257459633|ref|ZP_05624742.1| hydrogenase expression/formation protein [Campylobacter gracilis RM3268] gi|257443058|gb|EEV18192.1| hydrogenase expression/formation protein [Campylobacter gracilis RM3268] Length = 186 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+FAT L DL +Q LGH+ L+T++IYT+ +S ++ Sbjct: 130 AHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDSDKLR 175 >gi|167768465|ref|ZP_02440518.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1] gi|283795670|ref|ZP_06344823.1| putative phage integrase [Clostridium sp. M62/1] gi|167709989|gb|EDS20568.1| hypothetical protein CLOSS21_03024 [Clostridium sp. SS2/1] gi|291077342|gb|EFE14706.1| putative phage integrase [Clostridium sp. M62/1] gi|291537565|emb|CBL10677.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] gi|291560440|emb|CBL39240.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 431 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++A++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYASNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253] Length = 392 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H +RH+FAT L+ +G D+ +I+ +LGHS + T+ Y + + R E ++ Sbjct: 334 PFTIHEMRHTFATKLIESGADIHTIKDLLGHSTIKVTERYLHGSPVRYHEAINKA 388 >gi|290770043|gb|ADD61807.1| putative protein [uncultured organism] Length = 372 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAARQMCEVVDK----IT 366 Query: 62 QKDKK 66 K KK Sbjct: 367 LKRKK 371 >gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] Length = 297 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S H LRH+ AT L++G +LR IQ +LGH+ TT Y V K++++ Sbjct: 237 SLHPHKLRHTAATVALASGAELRVIQELLGHASPITTARYAKVGQKQLLKA 287 >gi|217974213|ref|YP_002358964.1| integrase family protein [Shewanella baltica OS223] gi|217499348|gb|ACK47541.1| integrase family protein [Shewanella baltica OS223] Length = 164 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T Y + + + + + Sbjct: 109 HILRHTFASHFMMNGGNILVLKQILGHADIKETMRYAHFAPEHLDDAITK 158 >gi|126665396|ref|ZP_01736378.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126669108|ref|ZP_01740038.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126626435|gb|EAZ97102.1| putative integrase/recombinase [Marinobacter sp. ELB17] gi|126630024|gb|EBA00640.1| putative integrase/recombinase [Marinobacter sp. ELB17] Length = 331 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RHS A HLL G D+ +I++ LGH L+TT IY ++ + Sbjct: 252 PVSPHVIRHSTACHLLQAGVDINTIRAWLGHVSLTTTNIYAEIDLETKARALAAC 306 >gi|168705853|ref|ZP_02738130.1| resolvase [Gemmata obscuriglobus UQM 2246] Length = 73 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 2 VPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 45 >gi|116662387|ref|YP_829440.1| phage integrase family protein [Arthrobacter sp. FB24] gi|116613166|gb|ABK05859.1| phage integrase family protein [Arthrobacter sp. FB24] Length = 352 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 T H LRH A+ L G D++++Q +LGH LSTT Y +V S+ + + + + + Sbjct: 285 TPHVLRHYCASSLYGAGMDIKALQELLGHQWLSTTSGYIHVRSEHVELAWKNANERVESR 344 >gi|304439581|ref|ZP_07399486.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371960|gb|EFM25561.1| phage integrase family site-specific recombinase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 309 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T + LRH FAT L NGG++ +Q ++GHS + T+ Y +N + + + P Sbjct: 238 ITPYQLRHYFATTYLENGGNIVYLQYLMGHSDIKMTKKYLKINQDSVANEHRRFSP 293 >gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916] gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916] Length = 387 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H+LRH++AT L G L+++Q +LGH +S T IYT+V K + D+ Sbjct: 330 FHSLRHTYATKLFEKGVQLKTVQKLLGHKDISITADIYTHVMPKEKVLAVDK 381 >gi|288927978|ref|ZP_06421825.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330812|gb|EFC69396.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 431 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V +++ E D+ K Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHASISSTQIYAQVTDRKISEDMDRLIAKQVAK 407 Query: 64 DK 65 +K Sbjct: 408 EK 409 >gi|37528605|ref|NP_931950.1| hypothetical protein plu4792 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788044|emb|CAE17164.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 144 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T +Y ++ + Sbjct: 85 HVLRHTFASHFMMNGGNIIALQQILGHASIIQTMVYAHLAPDYLQHAI 132 >gi|258647348|ref|ZP_05734817.1| integrase [Prevotella tannerae ATCC 51259] gi|260852873|gb|EEX72742.1| integrase [Prevotella tannerae ATCC 51259] Length = 409 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398 >gi|332300582|ref|YP_004442503.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] gi|332177645|gb|AEE13335.1| integrase family protein [Porphyromonas asaccharolytica DSM 20707] Length = 414 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 341 NLTFHLARHTFATLCLSKGVPMESVSKMLGHTNIRTTQIYARITNKKIEHDMEQF 395 >gi|304382840|ref|ZP_07365323.1| integrase [Prevotella marshii DSM 16973] gi|304336025|gb|EFM02272.1| integrase [Prevotella marshii DSM 16973] Length = 409 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + TAH RH+FAT + L NG + ++ +LGHS++ TT+ Y +V K++ + + + Sbjct: 342 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAHVTPKKVFDEFGRF 398 >gi|220909514|ref|YP_002484825.1| integrase family protein [Cyanothece sp. PCC 7425] gi|219866125|gb|ACL46464.1| integrase family protein [Cyanothece sp. PCC 7425] Length = 373 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + T H RH+ AT L+ G + +Q LGH+ + TT Y +V ++ M Y + Sbjct: 298 VRVTPHMFRHTHATDLIRTGMQMSYVQKRLGHASIQTTIDTYVHVTNEDMKHEYQKY 354 >gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 393 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 35/54 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ ++ ++ Sbjct: 330 NISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIIHDLEK 383 >gi|167553904|ref|ZP_02347647.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321766|gb|EDZ09605.1| gp27 [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 349 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+F H + NGG++ +Q ILGH+ + T Y + + + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYAHFAPDHLEQAV 331 >gi|323943751|gb|EGB39849.1| phage integrase site-specific recombinase [Escherichia coli H120] Length = 103 Score = 71.8 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y ++ + Sbjct: 45 HILRHTFASHFMMNGGNIIALQQILGHASIQQTMAYAHLAPDYLQNAV 92 >gi|319901621|ref|YP_004161349.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319416652|gb|ADV43763.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 407 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ + Q Sbjct: 341 NITFHFARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNDKIRKDMQQ 395 >gi|307566421|ref|ZP_07628857.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344873|gb|EFN90274.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 375 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ +++ Sbjct: 308 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFERF 364 >gi|265756479|ref|ZP_06090685.1| transposase [Bacteroides sp. 3_1_33FAA] gi|263233667|gb|EEZ19282.1| transposase [Bacteroides sp. 3_1_33FAA] Length = 409 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDKF 398 >gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 291 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H LRH+ AT L NGGD+ S++ ILGH+ ++TT +Y ++ + + ++ P + Sbjct: 229 VTPHLLRHTAATTYLRNGGDVASLRRILGHATINTTALYLHLVPEDLQTKLERFSPLAS 287 >gi|317055795|ref|YP_004104262.1| integrase family protein [Ruminococcus albus 7] gi|315448064|gb|ADU21628.1| integrase family protein [Ruminococcus albus 7] Length = 413 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H+LRH+FAT L +G +++ IQ +LGH+ +TT +Y + + Sbjct: 348 SCHSLRHTFATRLCESGVNIKVIQDVLGHADFNTTMNVYAEATKDLKQREFKEF 401 >gi|304382636|ref|ZP_07365130.1| integrase [Prevotella marshii DSM 16973] gi|304336261|gb|EFM02503.1| integrase [Prevotella marshii DSM 16973] Length = 429 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ D+ Sbjct: 359 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQLYARITNKKIEHDMDE 412 >gi|299141181|ref|ZP_07034318.1| integrase [Prevotella oris C735] gi|298577141|gb|EFI49010.1| integrase [Prevotella oris C735] Length = 444 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E ++ +K Sbjct: 352 SFHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDCKISEDMNRLIAKHQEK 411 Query: 64 DKKN 67 +K++ Sbjct: 412 NKED 415 >gi|229496998|ref|ZP_04390703.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316100|gb|EEN82028.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 384 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 316 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 369 >gi|167749518|ref|ZP_02421645.1| hypothetical protein EUBSIR_00474 [Eubacterium siraeum DSM 15702] gi|167657546|gb|EDS01676.1| hypothetical protein EUBSIR_00474 [Eubacterium siraeum DSM 15702] Length = 392 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H LRH+F T + G D+ + + GH+ + TT IYT+++ K + ++ Sbjct: 330 ITPHWLRHTFITLMYLAGVDVLTAKEQAGHADIKTTMAIYTHLDEKYKKKSINK 383 >gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599] gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 290 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH LRHSFA+ L+ +L IQ +LGHS L+ T +YT+ N ++ + Sbjct: 236 KVTAHILRHSFASQLVKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAISH 289 >gi|34540596|ref|NP_905075.1| integrase [Porphyromonas gingivalis W83] gi|34541125|ref|NP_905604.1| integrase [Porphyromonas gingivalis W83] gi|34396909|gb|AAQ65974.1| integrase [Porphyromonas gingivalis W83] gi|34397441|gb|AAQ66503.1| integrase [Porphyromonas gingivalis W83] Length = 409 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398 >gi|228471370|ref|ZP_04056171.1| integrase [Porphyromonas uenonis 60-3] gi|228306871|gb|EEK15984.1| integrase [Porphyromonas uenonis 60-3] Length = 388 Score = 71.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F T L G + SI ++GHS +++TQIY V +++ + ++ Sbjct: 332 PLTWHCARHTFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQVTDQKIAKDMER 385 >gi|260593265|ref|ZP_05858723.1| integrase [Prevotella veroralis F0319] gi|260534822|gb|EEX17439.1| integrase [Prevotella veroralis F0319] Length = 409 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ E ++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFEEFN 396 >gi|86741040|ref|YP_481440.1| phage integrase [Frankia sp. CcI3] gi|86567902|gb|ABD11711.1| phage integrase [Frankia sp. CcI3] Length = 322 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEI 52 T H LRH+FAT +L G DL + +LGH+R TT++YT + R+ + Sbjct: 266 TPHVLRHTFATAMLRRGADLVLVAELLGHARTDTTRVYTKPTEADRLRAV 315 >gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] Length = 331 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 27/40 (67%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HTLRHSFA L +G DLR +Q +LGH +TTQ+Y Sbjct: 255 EVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294 >gi|313631658|gb|EFR98891.1| transposition regulatory protein TnpB [Listeria seeligeri FSL N1-067] Length = 225 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH++A LL+NG D+ ++Q +L H+ T +Y + + +++ Sbjct: 35 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYARYSDDNKRKEFEK 84 >gi|303237560|ref|ZP_07324124.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482279|gb|EFL45310.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 410 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|294776403|ref|ZP_06741881.1| phage integrase, N-terminal SAM domain protein [Bacteroides vulgatus PC510] gi|294449729|gb|EFG18251.1| phage integrase, N-terminal SAM domain protein [Bacteroides vulgatus PC510] Length = 341 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H+ RHS A HLL +L I+ LGH +TT+IY + K+ +E + +P I ++ Sbjct: 261 CHSFRHSKAMHLLEADINLVYIRDFLGHVSTTTTEIYARASEKKKLEALSRVNPGIIKEG 320 Query: 65 K 65 K Sbjct: 321 K 321 >gi|218133377|ref|ZP_03462181.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC 43243] gi|217992250|gb|EEC58254.1| hypothetical protein BACPEC_01242 [Bacteroides pectinophilus ATCC 43243] gi|291527214|emb|CBK92800.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 379 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H RH+FAT + NG +S+Q +LGH L T +Y +V + + + Sbjct: 323 SPHCFRHTFATRAIENGMQPKSVQKLLGHGSLQLTMDLYCHVTDDTLFDEMRK 375 >gi|83719733|ref|YP_443767.1| phage integrase family site specific recombinase [Burkholderia thailandensis E264] gi|83653558|gb|ABC37621.1| site-specific recombinase, phage integrase family [Burkholderia thailandensis E264] Length = 159 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS +S T+ Y +++ + + P Sbjct: 106 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKLLP 158 >gi|85707316|ref|ZP_01038400.1| putative integrase/recombinase [Roseovarius sp. 217] gi|85668197|gb|EAQ23074.1| putative integrase/recombinase [Roseovarius sp. 217] Length = 335 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHS A +L D+R + LGH+ + TT+ Y V++ + +E + P Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIPPEL 311 Query: 62 QKDK 65 ++ K Sbjct: 312 RRGK 315 >gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002] gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002] Length = 342 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH F T L DL Q+++GH +T IYT++ +++ + DQ +P Sbjct: 262 PHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRKLTKSVDQANPLAK 318 >gi|304384469|ref|ZP_07366869.1| integrase [Prevotella marshii DSM 16973] gi|304334441|gb|EFM00734.1| integrase [Prevotella marshii DSM 16973] Length = 306 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D + +K Sbjct: 240 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMD----RLIRK 295 Query: 64 DKKN 67 +K Sbjct: 296 HQKE 299 >gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 349 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + T H LRH T LL G D+R +Q I+ H+ +STT YT V + + E + +P Sbjct: 278 VRATPHQLRHWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQVPTHKTSEAVSRLNP 335 >gi|291514241|emb|CBK63451.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 409 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398 >gi|288927761|ref|ZP_06421608.1| integrase [Prevotella sp. oral taxon 317 str. F0108] gi|288330595|gb|EFC69179.1| integrase [Prevotella sp. oral taxon 317 str. F0108] Length = 410 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|213052516|ref|ZP_03345394.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 94 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + + + + Sbjct: 35 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTK 84 >gi|194439346|ref|ZP_03071424.1| integrase [Escherichia coli 101-1] gi|194421708|gb|EDX37717.1| integrase [Escherichia coli 101-1] gi|323978493|gb|EGB73576.1| phage integrase [Escherichia coli TW10509] Length = 329 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA H + NGG++ ++Q I+GH+ + T Y ++ + + Sbjct: 268 HVLRHTFAAHFMINGGNILTLQRIMGHATIQQTMTYAHLAPDFLQDAI 315 >gi|257876368|ref|ZP_05656021.1| integrase [Enterococcus casseliflavus EC20] gi|257810534|gb|EEV39354.1| integrase [Enterococcus casseliflavus EC20] Length = 116 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSIT 61 T H RH+ + L +G ++ +Q LGH + TT IY +V + + + D+ + Sbjct: 5 ITPHGFRHTNCSLLFESGASIKEVQERLGHKDIKTTMNIYAHVTPQSVKKTGDRFAKFMA 64 Query: 62 QKDKKN 67 + K++ Sbjct: 65 KNSKRS 70 >gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36] Length = 356 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT L+ G D+ ++ +L HS L+TTQ+Y +V + + ++ Sbjct: 290 ITFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKRDAAER 342 >gi|317502577|ref|ZP_07960699.1| integrase [Prevotella salivae DSM 15606] gi|315666304|gb|EFV05849.1| integrase [Prevotella salivae DSM 15606] Length = 410 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] Length = 526 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L NG D++++ ++LGH +TT IYT+V E + Sbjct: 322 FHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTHVTGDMQSEAAAK 373 >gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 276 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 29/56 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HTLRH+FA HL IQ +LGH +++T+IYT + + YDQ Sbjct: 220 FRVRPHTLRHTFAAHLAEKNMPQSYIQELLGHVNINSTRIYTRLMEHARKKKYDQY 275 >gi|281424486|ref|ZP_06255399.1| integrase [Prevotella oris F0302] gi|281401323|gb|EFB32154.1| integrase [Prevotella oris F0302] Length = 410 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 342 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|325268476|ref|ZP_08135106.1| integrase [Prevotella multiformis DSM 16608] gi|324989004|gb|EGC20957.1| integrase [Prevotella multiformis DSM 16608] Length = 414 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D + +K Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDID----RLIRK 403 Query: 64 DKKN 67 +K Sbjct: 404 HQKE 407 >gi|258624874|ref|ZP_05719802.1| Integrase [Vibrio mimicus VM603] gi|258582872|gb|EEW07693.1| Integrase [Vibrio mimicus VM603] Length = 133 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+H + NGG++ ++ +LGH+ +S T Y++ + + + Sbjct: 78 HVLRHTFASHFMMNGGNILVLRDVLGHADISMTMRYSHFAPDHLSDAITR 127 >gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] Length = 333 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++AT ++ G D+ ++ +L H ++TTQIY + S++ E D+ Sbjct: 277 ITFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELVSEKKRETVDK 329 >gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 380 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T HT RHS A LL+ G D+ ++ ILGH + TQ+Y + K+ + Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAI 373 >gi|57234825|ref|YP_181071.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57225273|gb|AAW40330.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 336 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHS+A LL G L S+Q++LGH L TT +Y + + E D+ Sbjct: 221 VKIHPHQLRHSYAEQLLEKGAALTSVQALLGHESLQTTSVYLGIRPNALREAVDK 275 >gi|288799612|ref|ZP_06405071.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332860|gb|EFC71339.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 410 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 384 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H RH+ A+ L +G ++ +Q LGH + TT IYT+V + ++ Sbjct: 326 PHGFRHTHASLLFESGASIKEVQDRLGHENIKTTMDIYTHVTKSAREKTAEKF 378 >gi|302346838|ref|YP_003815136.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302151069|gb|ADK97330.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 410 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 393 >gi|160886644|ref|ZP_02067647.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483] gi|156107055|gb|EDO08800.1| hypothetical protein BACOVA_04656 [Bacteroides ovatus ATCC 8483] Length = 409 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDRF 398 >gi|281424826|ref|ZP_06255739.1| integrase [Prevotella oris F0302] gi|299142377|ref|ZP_07035509.1| integrase [Prevotella oris C735] gi|281401196|gb|EFB32027.1| integrase [Prevotella oris F0302] gi|298576099|gb|EFI47973.1| integrase [Prevotella oris C735] Length = 414 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D + +K Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMD----RLIRK 403 Query: 64 DKKN 67 +K Sbjct: 404 HQKE 407 >gi|288926490|ref|ZP_06420409.1| integrase [Prevotella buccae D17] gi|288336702|gb|EFC75069.1| integrase [Prevotella buccae D17] Length = 409 Score = 71.4 bits (175), Expect = 4e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQRYAKVTPKKLFEDMDKY 398 >gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 390 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H+ RH+F T +L+ G DL + ++GHS + TT+IY + K+ E + Sbjct: 332 ISFHSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAIN 383 >gi|224027002|ref|ZP_03645368.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM 18228] gi|224020238|gb|EEF78236.1| hypothetical protein BACCOPRO_03761 [Bacteroides coprophilus DSM 18228] Length = 409 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEEGVPIETISRMLGHNNIQTTQIYARVTPKKLFEDMDKF 398 >gi|332706105|ref|ZP_08426177.1| site-specific recombinase XerD [Lyngbya majuscula 3L] gi|332355197|gb|EGJ34665.1| site-specific recombinase XerD [Lyngbya majuscula 3L] Length = 341 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + +AH+LRH+ T L +G +LR +Q +LGH+ TT IY +V + Sbjct: 282 TISAHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVADR 327 >gi|189182967|ref|YP_001936752.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189183100|ref|YP_001936885.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189183215|ref|YP_001937000.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179738|dbj|BAG39518.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179871|dbj|BAG39651.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179986|dbj|BAG39766.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 128 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + T H LR +FAT ++NG +LR+I +LGHSR+STT +IYT ++ +++ ++ Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNK 87 >gi|317123939|ref|YP_004098051.1| integrase [Intrasporangium calvum DSM 43043] gi|317126599|ref|YP_004100711.1| integrase [Intrasporangium calvum DSM 43043] gi|315588027|gb|ADU47324.1| integrase family protein [Intrasporangium calvum DSM 43043] gi|315590687|gb|ADU49984.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 366 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 T H LRH A+HL G L++IQ ++GHS LSTT Y +V+S + + + Sbjct: 297 TPHVLRHYCASHLYQQGMSLKAIQELMGHSWLSTTTQYIHVHSTHIEASWAAANQR 352 >gi|32474105|ref|NP_867099.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32474789|ref|NP_867783.1| integrase/recombinase y4qk [Rhodopirellula baltica SH 1] gi|32444642|emb|CAD74644.1| putative integrase/recombinase [Rhodopirellula baltica SH 1] gi|32445329|emb|CAD75330.1| putative integrase/recombinase y4qk [Rhodopirellula baltica SH 1] Length = 282 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55 T HTLRHS+AT +L G +L+ +Q LGH L T++Y ++ +R +I Q Sbjct: 216 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 270 >gi|331004635|ref|ZP_08328099.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409660|gb|EGG89097.1| hypothetical protein HMPREF0491_02961 [Lachnospiraceae oral taxon 107 str. F0167] Length = 142 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHS+A L NG DL I LGHS L TT IY + +++ + ++ P Sbjct: 57 NVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEKAVP 113 >gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 391 Score = 71.1 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+ AT LL +G DL+ + LGHS ++ T IY +V E ++ Sbjct: 316 PVSFHGLRHTHATWLLESGVDLKIVSERLGHSSITITADIYAHVTDALQREAIEK 370 >gi|296330503|ref|ZP_06872982.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674712|ref|YP_003866384.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152400|gb|EFG93270.1| hypothetical protein BSU6633_05369 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412956|gb|ADM38075.1| phage integrase-like protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 77 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 35/55 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S H LRHS+ATHL++NG L IQS+LGH + TT+IY ++ K E Y + Sbjct: 22 SIHPHQLRHSYATHLINNGAPLEVIQSLLGHEKSETTKIYAQLSGKLRHEFYSKY 76 >gi|282859347|ref|ZP_06268457.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282587879|gb|EFB93074.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 404 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ +++ Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFERF 393 >gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT + LSNG L ++ +LGH+ ++TTQIY + K++++ Q Sbjct: 346 NITFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLDDMAQ 400 >gi|209694569|ref|YP_002262497.1| phage integrase [Aliivibrio salmonicida LFI1238] gi|208008520|emb|CAQ78693.1| phage integrase [Aliivibrio salmonicida LFI1238] Length = 347 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 33/51 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH +RH+FA++ + NGG++ ++Q ILGH+ + T Y ++ + ++ + Sbjct: 284 AHVMRHTFASYYMMNGGNIIALQRILGHTDIKQTMRYAHLAPDHLEDVVTK 334 >gi|255100620|ref|ZP_05329597.1| integrase/recombinase [Clostridium difficile QCD-63q42] Length = 346 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H RHS+A L NG DL I LGHS L TT IY + +++ + +Q P Sbjct: 261 NVHPHLFRHSWAMILYQNGVDLTLISQWLGHSNLETTLIYAHADTELKRKALEQAVP 317 >gi|237716536|ref|ZP_04547017.1| integrase [Bacteroides sp. D1] gi|262405315|ref|ZP_06081865.1| integrase [Bacteroides sp. 2_1_22] gi|294644634|ref|ZP_06722387.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810165|ref|ZP_06768833.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229442519|gb|EEO48310.1| integrase [Bacteroides sp. D1] gi|262356190|gb|EEZ05280.1| integrase [Bacteroides sp. 2_1_22] gi|292640071|gb|EFF58336.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442629|gb|EFG11428.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 409 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398 >gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA] gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA] Length = 331 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L+ G L ++ ++GHS + TT+IY + ++ YD Sbjct: 277 PHLLRHTFATRALNKGMPLPTLCDLMGHSSVETTRIYAKNGAGKIRYEYDMY 328 >gi|167620936|ref|ZP_02389567.1| site-specific recombinase, phage integrase family protein [Burkholderia thailandensis Bt4] Length = 141 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS +S T+ Y +++ + + P Sbjct: 88 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKLLP 140 >gi|258647236|ref|ZP_05734705.1| integrase [Prevotella tannerae ATCC 51259] gi|260852992|gb|EEX72861.1| integrase [Prevotella tannerae ATCC 51259] Length = 409 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEVGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398 >gi|315608577|ref|ZP_07883561.1| integrase [Prevotella buccae ATCC 33574] gi|315249748|gb|EFU29753.1| integrase [Prevotella buccae ATCC 33574] Length = 318 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 254 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 307 >gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 336 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYAHFAPDYLSDAIR 322 >gi|293569425|ref|ZP_06680722.1| putative integrase/recombinase [Enterococcus faecium E1071] gi|291587951|gb|EFF19802.1| putative integrase/recombinase [Enterococcus faecium E1071] Length = 201 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H+ RH FA L+ NG D+ IQ +LGH+ + TT++Y Sbjct: 139 IRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLR 181 >gi|227543842|ref|ZP_03973891.1| transposon integrase [Lactobacillus reuteri CF48-3A] gi|300909102|ref|ZP_07126565.1| phage integrase family site-specific recombinase [Lactobacillus reuteri SD2112] gi|227186170|gb|EEI66241.1| transposon integrase [Lactobacillus reuteri CF48-3A] gi|300894509|gb|EFK87867.1| phage integrase family site-specific recombinase [Lactobacillus reuteri SD2112] Length = 410 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + + H LRH+F T L+ +G +++ IQ++LGHS + TT IY +V + ++Q Sbjct: 347 NFSCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQTTLNIYADVTRDMKNQQFNQ 401 >gi|261343791|ref|ZP_05971436.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282568175|gb|EFB73710.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 329 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG + ++Q ILGHS L T Y + + + Sbjct: 269 HALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAHFAPDFLQDAI 316 >gi|325855557|ref|ZP_08171868.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483771|gb|EGC86731.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 404 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ +++ Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKLFVEFERF 393 >gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] Length = 390 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T +L+ G DL + ++GHS + TT+IY + K+ E + Sbjct: 332 ISFHCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKKEEAIN 383 >gi|186474603|ref|YP_001863574.1| integrase family protein [Burkholderia phymatum STM815] gi|184198562|gb|ACC76524.1| integrase family protein [Burkholderia phymatum STM815] Length = 331 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H +RHS A HLL +G D+ +I++ LGH L TT IY V+ + + Sbjct: 254 ISPHCIRHSCAVHLLRSGNDINTIRAWLGHVSLDTTNIYAEVDLEMKAKAL 304 >gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 336 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH + NGG++ ++Q ILGH+ + T Y + + + Sbjct: 274 HVLRHTFATHFMINGGNIITLQRILGHTTIEQTMTYAHFAPDYLSDAIR 322 >gi|265751257|ref|ZP_06087320.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263238153|gb|EEZ23603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 409 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQ+Y V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDRF 398 >gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] Length = 328 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FATH + NGG + ++Q ILGHS L T Y + + + Sbjct: 269 HALRHTFATHFMMNGGSIITLQRILGHSTLQQTLTYAHFAPDFLQDAI 316 >gi|307564424|ref|ZP_07626965.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346784|gb|EFN92080.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 431 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ + D+ + Sbjct: 348 SYHMARHTFGTMCLSAGIPIESIAKMMGHTSISSTQIYAQVTDNKISKDMDRLIAKQSAN 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|207110374|ref|ZP_03244536.1| integrase-recombinase protein [Helicobacter pylori HPKX_438_CA4C1] Length = 99 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 32/48 (66%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHSFAT L DL +Q LGH+ L+T++IYT+ + +R+ E Sbjct: 45 AHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHFDKERLEEA 92 >gi|281423083|ref|ZP_06253996.1| integrase [Prevotella oris F0302] gi|281402796|gb|EFB33627.1| integrase [Prevotella oris F0302] Length = 409 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 345 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 398 >gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 385 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + HT RH+FAT L+ GGDL ++ +LGH+ + +TQ+Y +V + +E ++ Sbjct: 325 NVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADVVMETKIEAVNR 378 >gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1] Length = 465 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+ L+++G + + +LGHS+L TTQ Y+++++ ++ D Sbjct: 412 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 460 >gi|330448288|ref|ZP_08311936.1| phage integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492479|dbj|GAA06433.1| phage integrase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 480 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RHS AT+LL G DL + +GHS ++TTQ Y + + Sbjct: 427 VSPHDFRHSVATNLLRAGFDLLLVSKFMGHSSITTTQRYDRRTDDDLKGVV 477 >gi|330997655|ref|ZP_08321500.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila YIT 11841] gi|329570183|gb|EGG51923.1| hypothetical protein HMPREF9442_02600 [Paraprevotella xylaniphila YIT 11841] Length = 68 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 36/49 (73%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H RHS+A+ LL NG D+ +I+S++GH+ + TTQIYT++ +++ + Sbjct: 9 SFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQKEKA 57 >gi|237743641|ref|ZP_04574122.1| predicted protein [Fusobacterium sp. 7_1] gi|229432672|gb|EEO42884.1| predicted protein [Fusobacterium sp. 7_1] Length = 414 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + S G DL+ IQ LGHS +STT IY + ++ + E+ + Sbjct: 352 SVHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEVIGK 404 >gi|325568568|ref|ZP_08144861.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] gi|325157606|gb|EGC69762.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] Length = 408 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 T H RH+ A+ L G ++ +Q+ LGHS + TT +YT+V + E D Sbjct: 332 ITPHGFRHTHASLLFEAGASMKQVQARLGHSNIKTTMNVYTHVTKEGKEETAD 384 >gi|323974580|gb|EGB69703.1| phage integrase [Escherichia coli TW10509] Length = 166 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T HT RHS+A +L G L+ +QS++GH +S+T++YT V Sbjct: 95 VPVTPHTFRHSYAMLMLYAGIPLKVLQSLMGHKSISSTEVYTKV 138 >gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 342 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 33/50 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+ L +G L++I+ +LGHS + TT+IY ++ + + ++ Sbjct: 277 HDLRHTFASLLALSGETLQTIRDLLGHSDIRTTEIYAHLTADHLKAAVNK 326 >gi|29028384|gb|AAO64735.1| integrase [Enterobacteria phage P2] Length = 337 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLTDAI 316 >gi|288800626|ref|ZP_06406084.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332839|gb|EFC71319.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 431 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ + D+ K Sbjct: 347 SYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISKDMDRLIAKHKAK 406 Query: 64 DKK 66 +K+ Sbjct: 407 EKE 409 >gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 305 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H+LRH++ATHL+ G +L +Q ILGH + TT YT++ + D+ Sbjct: 237 ISPHSLRHAYATHLVEAGVELTEVQDILGHHSILTTVRYTHLTDRSRHHAIDR 289 >gi|254496761|ref|ZP_05109618.1| phage integrase family integrase/recombinase [Legionella drancourtii LLAP12] gi|254354018|gb|EET12696.1| phage integrase family integrase/recombinase [Legionella drancourtii LLAP12] Length = 166 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 29/51 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+FAT L G L S+Q LGH RL TT IY N ++E + Sbjct: 112 VTPHILRHTFATLALQKGISLASVQKALGHDRLETTAIYLNFTDAHVIEEF 162 >gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] Length = 401 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H+LRH+ AT LL +G +++ IQ+ LGHSR++TT Y++V K + + Sbjct: 334 FPFNFHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDTYSHVTHKMQRQTVN 388 >gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 400 Score = 71.1 bits (174), Expect = 5e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 S H LRH++AT LL + +Q +LGH +STT IY++V + + Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKAAAMK 385 >gi|218129372|ref|ZP_03458176.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697] gi|317475338|ref|ZP_07934603.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988442|gb|EEC54764.1| hypothetical protein BACEGG_00949 [Bacteroides eggerthii DSM 20697] gi|316908505|gb|EFV30194.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 71.1 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQ+Y V KR+ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKRLFEDMDRF 398 >gi|149918976|ref|ZP_01907461.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149820129|gb|EDM79548.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 398 Score = 71.1 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+H + G +R +Q LGH ++TT Y +++ E+ + P Sbjct: 314 HVLRHTFASHAVMRGVPMRQVQEWLGHQSITTTMRYAHLSRGYGDELIKRLAP 366 >gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4] gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5] gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA] gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973] gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36] gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606] gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis] gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4] gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5] gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA] gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973] gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606] gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36] Length = 372 Score = 71.1 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ IT Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK----IT 366 Query: 62 QKDKK 66 K K+ Sbjct: 367 LKRKE 371 >gi|163759225|ref|ZP_02166311.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43] gi|162283629|gb|EDQ33914.1| hypothetical protein HPDFL43_05655 [Hoeflea phototrophica DFL-43] Length = 366 Score = 71.1 bits (174), Expect = 6e-11, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FAT L GD+R++Q ILGHS + TT Y +V + D Sbjct: 292 FHDLRHTFATRFLRATGDMRALQLILGHSSIETTMRYAHVTAADAKRRMDA 342 >gi|310826137|ref|YP_003958494.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612] gi|308737871|gb|ADO35531.1| hypothetical protein ELI_0515 [Eubacterium limosum KIST612] Length = 432 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH+F ++LLSNG + +Q +LGH+ +STT IY + + Sbjct: 372 HFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREAKR 419 >gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5] Length = 330 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 33/49 (67%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FAT+L+ G +L IQ +LGHS ++ T+IYT+ + + + Sbjct: 278 AHLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYTHTSPEGLRSAV 326 >gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 267 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55 + T H RH+ AT LS G + ++ +LGH+++STTQIY V ++ + ++ Q Sbjct: 208 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDANKKAAVHKQ 262 >gi|315149854|gb|EFT93870.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0012] Length = 372 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 S + H+ RH+ A+ L +G ++ +Q LGH+ ++TT IYT+V ++ Sbjct: 311 SLSPHSFRHTHASLLFESGATIKDVQKRLGHTNVNTTMDIYTHVTKSSEKNAIEK 365 >gi|291526795|emb|CBK92381.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 353 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H RH+FA+ N +++ IQ ++GH+ +STT IY N + E ++ Sbjct: 293 SCHIFRHTFASRFCENETNVKVIQEVMGHADVSTTMNIYAEANPEVTREALEK 345 >gi|22096306|gb|AAM92159.1| TnpA-like protein [Staphylococcus aureus] Length = 361 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T HTLRH+ AT L+ NG D +Q LGH+++ TT Y +++++ M E + + Sbjct: 302 TPHTLRHTHATELIRNGWDAAYVQKRLGHAQVQTTLNTYVHLSNQDMKEEFKKY 355 >gi|288801542|ref|ZP_06406990.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288331523|gb|EFC70013.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 387 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V +++ Sbjct: 337 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNVSMTERYAKVTPQKL 386 >gi|254885280|ref|ZP_05257990.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838073|gb|EET18382.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 534 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 33/48 (68%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRHS+AT L++NG ++ + +LGH + +T+IY V+ + + E+ Sbjct: 478 PHSLRHSYATFLINNGQTMKEVGDLLGHKSIDSTRIYAKVDFQSLREV 525 >gi|86140615|ref|ZP_01059174.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832557|gb|EAQ51006.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 422 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FAT + LSNG + ++ +LGH++++TTQIY V K++ E ++ + Sbjct: 345 NLTFHMARHTFATTVTLSNGMPIETVSKLLGHTKIATTQIYARVLDKKVEEDMNKLQEVL 404 Query: 61 TQKDK 65 K K Sbjct: 405 QSKSK 409 >gi|323344120|ref|ZP_08084346.1| integrase [Prevotella oralis ATCC 33269] gi|323094849|gb|EFZ37424.1| integrase [Prevotella oralis ATCC 33269] Length = 416 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA+ + L G + +I +LGHS L TTQ+Y V K++ E D+ Sbjct: 352 TYHAGRHSFASLITLEAGVPIETICKMLGHSNLQTTQVYAKVTPKKLFEDMDKY 405 >gi|295094710|emb|CBK83801.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 394 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H LRH+FAT + NG +++Q ILGH L T +Y +V + + Sbjct: 337 SPHCLRHTFATRAIENGMQPKTLQKILGHGSLQMTMDLYCHVTEDTLFTEMMK 389 >gi|310826836|ref|YP_003959193.1| Site-specific recombinase XerC [Eubacterium limosum KIST612] gi|308738570|gb|ADO36230.1| Site-specific recombinase XerC [Eubacterium limosum KIST612] Length = 303 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55 T H+LRHSFAT L G D+R++ +LGHS ++ T Y++ +K E ++ Sbjct: 245 VTFHSLRHSFATRALEAGADMRTVSDLLGHSSVAFTMNCYSHSATKLKREQMEK 298 >gi|325298368|ref|YP_004258285.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317921|gb|ADY35812.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 404 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 341 NITFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNEKIRKDME 394 >gi|322420382|ref|YP_004199605.1| integrase family protein [Geobacter sp. M18] gi|320126769|gb|ADW14329.1| integrase family protein [Geobacter sp. M18] Length = 334 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H+LRH+ AT LL G DL +++ LGHS + T+ Y ++N ++ Sbjct: 282 HSLRHTCATRLLDRGIDLYTVKEWLGHSTIQVTERYAHLNPAKL 325 >gi|288800250|ref|ZP_06405708.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332463|gb|EFC70943.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 409 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+FAT + L G + ++ +LGH+ +S T+ Y V +++ E +++ Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHTNVSMTERYAKVIPQKLFEEFNRF 398 >gi|261879822|ref|ZP_06006249.1| integrase [Prevotella bergensis DSM 17361] gi|270333480|gb|EFA44266.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQ 393 >gi|126667680|ref|ZP_01738648.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] gi|126627783|gb|EAZ98412.1| hypothetical protein MELB17_10268 [Marinobacter sp. ELB17] Length = 303 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H++ HSFATH+L NG +LRSIQS+LGH+ TT YT + + Sbjct: 236 VHIHSMGHSFATHMLENGVNLRSIQSLLGHASPVTTARYTRMTHEAQQ 283 >gi|239502669|ref|ZP_04661979.1| integrase [Acinetobacter baumannii AB900] Length = 194 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 36/55 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T+H+ R SFAT L+ GGD+ SIQ ++GHS + TTQ Y + + + ++ ++ Sbjct: 138 IQATSHSGRRSFATRLIRKGGDIYSIQQLMGHSSILTTQKYFASDPELLRQVAEK 192 >gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 380 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T HT RHS A LL+ G D+ ++ ILGH + TQ+Y + K+ + Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAI 373 >gi|291166299|gb|EFE28345.1| site-specific recombinase, phage integrase family [Filifactor alocis ATCC 35896] Length = 432 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH+F ++LLS G + +Q +LGH+ ++TT IY + + + Sbjct: 372 HFHTLRHTFTSNLLSYGAAPKEVQELLGHADVTTTMNIYAHASREAKR 419 >gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] Length = 305 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301 Query: 61 T 61 Sbjct: 302 R 302 >gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T HT RHS A LL+ G D+ ++ ILGH + TQ+Y + K+ + Sbjct: 322 NVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDKKKDDAI 373 >gi|283797039|ref|ZP_06346192.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075455|gb|EFE12819.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291528287|emb|CBK93873.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] gi|291534519|emb|CBL07631.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 432 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 + HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + N + Sbjct: 371 NFHFHTLRHTYTTNLLSNGAAPKDVQELLGHSDVSTTMNVYAHANRE 417 >gi|160891067|ref|ZP_02072070.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492] gi|156859288|gb|EDO52719.1| hypothetical protein BACUNI_03514 [Bacteroides uniformis ATCC 8492] Length = 421 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RHSFAT + LSNG + ++ S+LGH + TTQ+Y + +++ + ++ Sbjct: 341 PLSWHVSRHSFATSVCLSNGVPIETVSSMLGHKDIKTTQVYAKITKEKLSKDVEK 395 >gi|294673817|ref|YP_003574433.1| site-specific recombinase, phage integrase family [Prevotella ruminicola 23] gi|294472730|gb|ADE82119.1| site-specific recombinase, phage integrase family [Prevotella ruminicola 23] Length = 409 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +AH RH FAT L+NG + S+ +LGH+ + TTQIY + +K++ Sbjct: 341 PISAHCARHGFATMALTNGMPIESVSRVLGHTNIVTTQIYARITTKKL 388 >gi|307565773|ref|ZP_07628242.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345599|gb|EFN90967.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 409 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT + L G + ++ +LGHS +S T+ Y V ++ E +D Sbjct: 342 FPFTTHTARHTFATLITLEQGVPIETVSKMLGHSNISMTERYAKVTPLKLFEEFD 396 >gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 382 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H+LRH+ AT LL G +++ IQ LGHS+ STT +Y++V +K + Sbjct: 317 FHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSHVTAKMQNSTVN 367 >gi|167762114|ref|ZP_02434241.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC 43183] gi|167765046|ref|ZP_02437167.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC 43183] gi|167697715|gb|EDS14294.1| hypothetical protein BACSTE_03440 [Bacteroides stercoris ATCC 43183] gi|167700073|gb|EDS16652.1| hypothetical protein BACSTE_00465 [Bacteroides stercoris ATCC 43183] Length = 401 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ ++ ++ Sbjct: 330 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIVHDLEK 383 >gi|257076019|ref|ZP_05570380.1| phage integrase family protein [Ferroplasma acidarmanus fer1] Length = 329 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH +AT L+ G D+R +Q ++GH+R+ TT YT++ K + E ++ Sbjct: 222 IHPHSFRHYYATTLVRLGVDIRRVQILVGHARIETTTRYTHLTQKEVGEAVKES 275 >gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135] gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135] gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135] gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135] Length = 372 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----IT 366 Query: 62 QKDKK 66 K K+ Sbjct: 367 LKRKE 371 >gi|332827396|gb|EGK00148.1| hypothetical protein HMPREF9455_03480 [Dysgonomonas gadei ATCC BAA-286] Length = 402 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + T RHSFAT +SNG + ++ +LGH+ + TTQIY + S ++ + Sbjct: 342 NVTFRVSRHSFATLAISNGVSIEAVSKMLGHTNVKTTQIYAQITSTKISK 391 >gi|317480814|ref|ZP_07939897.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903018|gb|EFV24889.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQVYARVTPKKLFEDMDRF 398 >gi|261879768|ref|ZP_06006195.1| integrase [Prevotella bergensis DSM 17361] gi|270333565|gb|EFA44351.1| integrase [Prevotella bergensis DSM 17361] Length = 407 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKVEHDMEQ 393 >gi|255029354|ref|ZP_05301305.1| transposition regulatory protein tnpB [Listeria monocytogenes LO28] Length = 422 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH++A LL+NG D+ ++Q +L H+ T +Y + + +++ Sbjct: 232 HEFRHTYAVKLLNNGADILTVQELLAHASPEMTMVYARYSDDNKRKEFEK 281 >gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 301 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 36/55 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + HT RHSFA L GGDL S+Q+I+GHS L++T+ Y + ++ + + + Q P Sbjct: 243 SPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYITLLTEDIQKQHRQFSP 297 >gi|253579366|ref|ZP_04856636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849464|gb|EES77424.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 315 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGHS +STT IY +V + E + Sbjct: 256 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAEEFK 307 >gi|237752297|ref|ZP_04582777.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430] gi|229375786|gb|EEO25877.1| integrase/recombinase XerD [Helicobacter winghamensis ATCC BAA-430] Length = 355 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRHSFAT L DL +Q LGH+ L T++IY + + +++ Sbjct: 303 AHMLRHSFATLLYQKSQDLVLVQEALGHASLDTSRIYMHFDKQKLK 348 >gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3] gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3] Length = 305 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301 Query: 61 T 61 Sbjct: 302 R 302 >gi|225377965|ref|ZP_03755186.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM 16841] gi|225210216|gb|EEG92570.1| hypothetical protein ROSEINA2194_03625 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 T H LRH+FAT+ ++ G +++Q +LGH+ L T +Y +V + + E Sbjct: 323 TPHCLRHTFATNCIAKGMRPKTLQKLLGHNSLQMTMDLYCHVLDETLKE 371 >gi|52841461|ref|YP_095260.1| site specific recombinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628572|gb|AAU27313.1| site specific recombinase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 405 Score = 70.7 bits (173), Expect = 6e-11, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH FA+ L+ G DL +++ +LGHS + T Y ++ + ++ ++ Sbjct: 351 HDLRHHFASKLVMAGIDLNTVRELLGHSDIKMTLRYAHLAPEHKIKAVNK 400 >gi|295102865|emb|CBL00410.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 387 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+FAT L G D++++ +LGH+ + T Q Y + + R + + Sbjct: 311 TIHPHVLRHTFATTCLQAGCDIKTLSELLGHANANVTLQRYVHSDLNRKQKALQR 365 >gi|282860290|ref|ZP_06269359.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282586887|gb|EFB92123.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 412 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V ++ E D+ + + Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSVR 407 Query: 64 DKK 66 +K+ Sbjct: 408 EKE 410 >gi|163855809|ref|YP_001630107.1| putative integrase/recombinase [Bordetella petrii DSM 12804] gi|163259537|emb|CAP41838.1| putative integrase/recombinase [Bordetella petrii] Length = 336 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+ A HLL +G ++ I+ LGH L TT Y + + E P Sbjct: 257 VTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCEPVAVA 316 Query: 63 KDKKN 67 +K+ Sbjct: 317 PTRKS 321 >gi|255535345|ref|YP_003095716.1| probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255341541|gb|ACU07654.1| probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 295 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRHS+ATHLL +G + +Q +LGH R+ +T Y + S ++ Sbjct: 215 EVHTHTLRHSYATHLLEDGVSIIMVQKLLGHERIESTMEYLHSLSVHRRDL 265 >gi|269956536|ref|YP_003326325.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] gi|269305217|gb|ACZ30767.1| integrase family protein [Xylanimonas cellulosilytica DSM 15894] Length = 362 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+ AT L++ G D++ + +LGH+ ++TT +Y + + + HP Sbjct: 285 PATPHALRHTTATLLVAQGWDVKVVAELLGHASIATTGVYLDRIEGELAAAI-RAHP 340 >gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 273 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H++RH FA L NGGD +Q +LGH +++TT IYT ++S + + + + Sbjct: 216 KVYPHSIRHYFAKSFLMNGGDATVLQQLLGHEQIATTTIYTKLSSNELSDQFSK 269 >gi|154485138|ref|ZP_02027586.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC 27560] gi|149734091|gb|EDM50210.1| hypothetical protein EUBVEN_02862 [Eubacterium ventriosum ATCC 27560] Length = 432 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH++ ++LLSNG + +Q +LGH+ +STT IY + + Sbjct: 372 HFHMLRHTYTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHATREAKR 419 >gi|38637723|ref|NP_942697.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527061|gb|AAP85811.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 336 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LRH+ HLL +G L I+ LGH + TT+IY N + + ++ Sbjct: 258 VSPHSLRHTKGMHLLQSGVPLEIIRDFLGHVDVKTTEIYARANLEMKRKALEKA 311 >gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 337 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ IT Sbjct: 276 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQVVDK----IT 331 Query: 62 QKDKK 66 K K+ Sbjct: 332 LKRKE 336 >gi|331000358|ref|ZP_08324039.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] gi|329572154|gb|EGG53819.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] Length = 320 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LR +FAT L+S D+ +Q ++GH+ ++TT Y + + + + ++ Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLRKAAEKA 318 >gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] Length = 321 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 36/58 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + NG D+ ++Q++LGHS L + Y N+ S+ +M+ + + P Sbjct: 259 VRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSRDVMDAHKKFSP 316 >gi|269104474|ref|ZP_06157170.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161114|gb|EEZ39611.1| integrase/recombinase [Photobacterium damselae subsp. damselae CIP 102761] Length = 468 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + H RHS AT+LL G DL + +GHS ++TTQ Y + + Sbjct: 415 VSPHDFRHSVATNLLRAGHDLLLVSKFMGHSSVTTTQRYDRRSDDDLK 462 >gi|237710855|ref|ZP_04541336.1| transposase [Bacteroides sp. 9_1_42FAA] gi|237725667|ref|ZP_04556148.1| transposase [Bacteroides sp. D4] gi|298385294|ref|ZP_06994853.1| integrase [Bacteroides sp. 1_1_14] gi|317474053|ref|ZP_07933332.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229435475|gb|EEO45552.1| transposase [Bacteroides dorei 5_1_36/D4] gi|229454699|gb|EEO60420.1| transposase [Bacteroides sp. 9_1_42FAA] gi|298262438|gb|EFI05303.1| integrase [Bacteroides sp. 1_1_14] gi|316909895|gb|EFV31570.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 347 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDRF 398 >gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] Length = 337 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M E+ D+ IT Sbjct: 276 KITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKMAAQQMCEVVDK----IT 331 Query: 62 QKDKK 66 K K+ Sbjct: 332 LKRKE 336 >gi|319644364|ref|ZP_07998837.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A] gi|317384161|gb|EFV65135.1| hypothetical protein HMPREF9011_04440 [Bacteroides sp. 3_1_40A] Length = 346 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+ RH+ ATH L +G +L IQ +LGH + TT Y V+S++M++ Sbjct: 263 VDFHCHSFRHARATHWLEDGVNLAQIQKLLGHESIETTMKYVGVSSEQMIQAL 315 >gi|153808662|ref|ZP_01961330.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185] gi|149128488|gb|EDM19706.1| hypothetical protein BACCAC_02961 [Bacteroides caccae ATCC 43185] Length = 397 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ ++ ++ Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDITLVRDLEKA 385 >gi|78358438|ref|YP_389887.1| phage integrase family site specific recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220843|gb|ABB40192.1| site-specific recombinase, phage integrase family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 407 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 30/45 (66%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRH+FA+ L++NG L +++ +LGHS L+ T+ Y ++ Sbjct: 354 VCFHTLRHTFASRLVANGTPLYNVKELLGHSSLAMTERYAHLAPD 398 >gi|218129569|ref|ZP_03458373.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697] gi|217988299|gb|EEC54622.1| hypothetical protein BACEGG_01146 [Bacteroides eggerthii DSM 20697] Length = 409 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS ++TTQ+Y V K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDITTTQVYARVIPKKLFEDMDKY 398 >gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1] Length = 379 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+ L+++G + + +LGHS+L TTQ Y+++++ ++ D Sbjct: 326 HDLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVD 374 >gi|258592916|emb|CBE69225.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 124 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%) Query: 5 AHTLRH-SFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H RH +FATH+L G D+R +Q +LGHS + TT +YT+V ++ Sbjct: 69 FHGKRHPAFATHVLEGGYDIRPVQELLGHSDVKTTMMYTHVLNR 112 >gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68] gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68] Length = 382 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H LRH+ A+ LL G +++ +Q LGHS + T +Y ++ KR + Q Sbjct: 322 ITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEKTAAQF 376 >gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 326 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 38/58 (65%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA L NGGD+ +++SILGH R+ TT++Y + S+ M +++ P Sbjct: 250 VQCSCHTFRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSRDMQIQHEKFSP 307 >gi|311234897|gb|ADP87751.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 457 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 30/47 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRH++AT +L G D+ +++ +LGHS ++ T+ Y ++ + Sbjct: 402 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHLCDRAKRNA 448 >gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] Length = 385 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 S T H RHS A+ L S G ++ +Q LGH TT IYT+V K+ E + Sbjct: 324 SITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQGQEAVQK 378 >gi|270265399|ref|ZP_06193659.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270040654|gb|EFA13758.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 264 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RHS+A H++ G L+ +Q +LGH + +T++YT V Sbjct: 186 IPITPHVFRHSYAMHMIYQGTPLKVLQGLLGHEKPESTEVYTRV 229 >gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 305 Score = 70.7 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301 Query: 61 T 61 Sbjct: 302 R 302 >gi|265753741|ref|ZP_06089096.1| integrase [Bacteroides sp. 3_1_33FAA] gi|263235455|gb|EEZ20979.1| integrase [Bacteroides sp. 3_1_33FAA] Length = 412 Score = 70.3 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 33/53 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HT RH+ AT L+ G + ++Q +LGH+ + TT+IY+ V + +++ + Sbjct: 333 TYHTSRHTCATLLVHQGVPITTVQKLLGHTSVKTTEIYSEVFDETIIKDLTRA 385 >gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 400 Score = 70.3 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 S H LRH++AT LL + +Q +LGH +STT IY++V + + Sbjct: 331 SVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYSHVMPEIKKAAAMK 385 >gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14] gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14] Length = 396 Score = 70.3 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ ++ ++ Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385 >gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6] gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6] Length = 396 Score = 70.3 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ ++ ++ Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385 >gi|138895716|ref|YP_001126169.1| transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|138897050|ref|YP_001127503.1| transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|196250971|ref|ZP_03149654.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267229|gb|ABO67424.1| Transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|134268563|gb|ABO68758.1| Transposition regulatory protein TnpA [Geobacillus thermodenitrificans NG80-2] gi|196209535|gb|EDY04311.1| integrase family protein [Geobacillus sp. G11MC16] Length = 379 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT-HP 58 + H LRH+ AT D++ +Q LGHS++ TT +Y + + + + E +++ H Sbjct: 307 IHVHPHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHA 366 Query: 59 -SITQKDKKN 67 IT+K K+ Sbjct: 367 FHITKKSGKD 376 >gi|310823396|ref|YP_003955754.1| phage integrase [Stigmatella aurantiaca DW4/3-1] gi|309396468|gb|ADO73927.1| phage integrase [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH++A+HL G L+ IQ ++GH + T+ Y +++ E Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360 >gi|295106975|emb|CBL04518.1| Site-specific recombinase XerD [Gordonibacter pamelaeae 7-10-1-b] Length = 395 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 + HTLRH+ AT+LL G +R +Q LGHS ++ T QIY +V R Sbjct: 325 AAHFHTLRHTHATYLLDQGVSIRVLQERLGHSSVNVTLQIYGHVLPGR 372 >gi|115376183|ref|ZP_01463426.1| transposase [Stigmatella aurantiaca DW4/3-1] gi|115366833|gb|EAU65825.1| transposase [Stigmatella aurantiaca DW4/3-1] Length = 385 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH++A+HL G L+ IQ ++GH + T+ Y +++ E Sbjct: 313 HDLRHTYASHLAMKGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 360 >gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 281 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 28/39 (71%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T HT+RHSFA H L G D+ S+Q +LGH+ ++T Q+Y Sbjct: 238 ITPHTMRHSFAAHQLQKGTDIHSVQRMLGHAGVTTMQMY 276 >gi|218263385|ref|ZP_03477505.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii DSM 18315] gi|218222765|gb|EEC95415.1| hypothetical protein PRABACTJOHN_03191 [Parabacteroides johnsonii DSM 18315] Length = 425 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGH+ + TTQIY V K++ E D+ Sbjct: 363 HMGRHSFASLVTLEEGVPIETISKMLGHNNIKTTQIYARVTPKKLFEDMDRF 414 >gi|168178695|ref|ZP_02613359.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|182671520|gb|EDT83494.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] Length = 356 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 S + H LRH++AT L+S+G D +++ ILGH T +IY++VN M + Sbjct: 298 SISLHELRHTYATLLISSGIDFKTVAKILGHDVEQTMRIYSHVNDDMMKKA 348 >gi|53720954|ref|YP_109940.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243] gi|52211368|emb|CAH37357.1| putative bacteriophage integrase [Burkholderia pseudomallei K96243] Length = 284 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ + + P Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLP 283 >gi|317470459|ref|ZP_07929847.1| phage integrase [Anaerostipes sp. 3_2_56FAA] gi|316901974|gb|EFV23900.1| phage integrase [Anaerostipes sp. 3_2_56FAA] Length = 432 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH+F ++LLSNG + +Q +LGHS +STT IY + + Sbjct: 372 HFHMLRHTFTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSKREAKR 419 >gi|238025655|ref|YP_002909887.1| Phage integrase family protein [Burkholderia glumae BGR1] gi|237880320|gb|ACR32651.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 613 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T+ H+LRH+F T +++G L +Q +LGH+ L TT +Y +R + H Sbjct: 546 TSPHSLRHTFGTQSVASGMTLDVVQQLLGHASLQTTSVYVTAEQRRQRIEAAKFH 600 >gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] Length = 321 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA L G ++ +Q ILGHS L ++Y ++ S + + P Sbjct: 259 VRCSPHTFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVHLFSNEIGRSHRGFSP 316 >gi|291562350|emb|CBL41166.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 403 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+L+ G D +++Q + GH TT IY V +++ + + Sbjct: 340 FKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEKLSSVVNAA 399 >gi|149374827|ref|ZP_01892600.1| resolvase [Marinobacter algicola DG893] gi|149360716|gb|EDM49167.1| resolvase [Marinobacter algicola DG893] Length = 246 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFA HLL +G L+ + +LGH + +T++YTNV Sbjct: 188 FKIGCHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESTEVYTNV 231 >gi|255693724|ref|ZP_05417399.1| integrase protein [Bacteroides finegoldii DSM 17565] gi|260620475|gb|EEX43346.1| integrase protein [Bacteroides finegoldii DSM 17565] Length = 391 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+Y N+ ++ ++ +Q Sbjct: 332 ISFHTARHTNATLLIYNGANITTVQKLLGHKSVKTTQVYANIMDITIVRDLEKA---ASQ 388 Query: 63 KDK 65 K++ Sbjct: 389 KNE 391 >gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] Length = 338 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60 T HTLR++FA L +GGD+ ++ +LGHS + T+ Y ++ + + + Y + P Sbjct: 272 KITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTESAYLDLTTSDIRKNYLKFSPLE 331 Query: 61 TQKDK 65 K K Sbjct: 332 NMKKK 336 >gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 413 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FAT + LSNG + S+ +LGH+ + TTQIY V ++ E + + Sbjct: 350 NLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSEDMHKLEVRM 409 Query: 61 TQKD 64 +D Sbjct: 410 ASQD 413 >gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|333029238|ref|ZP_08457299.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|332739835|gb|EGJ70317.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 390 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T +L+ G DL + ++GH+ + TT+IY + K+ E + Sbjct: 332 ISFHCSRHTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKKEEAIN 383 >gi|237725748|ref|ZP_04556229.1| integrase [Bacteroides sp. D4] gi|229435556|gb|EEO45633.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 409 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 398 >gi|330016038|ref|ZP_08308377.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] gi|328529758|gb|EGF56652.1| site-specific recombinase, phage integrase family [Klebsiella sp. MS 92-3] Length = 327 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T Y + + + + Sbjct: 269 HALRHSFATHFMINGGSIITLQRILGHARIEQTMAYAHFAPEYLQDAI 316 >gi|323485863|ref|ZP_08091198.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum WAL-14163] gi|323400851|gb|EGA93214.1| hypothetical protein HMPREF9474_02949 [Clostridium symbiosum WAL-14163] Length = 410 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 + H+LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 350 SVHSLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398 >gi|260439192|ref|ZP_05793008.1| putative phage integrase [Butyrivibrio crossotus DSM 2876] gi|292808362|gb|EFF67567.1| putative phage integrase [Butyrivibrio crossotus DSM 2876] Length = 432 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + + Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419 >gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29] gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29] Length = 305 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 TTAH RH++A++ L G D+ ++ ++ HS++ TT++Y + + E D+ +P Sbjct: 242 FKTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHAFGNSLAESNDKYNPLN 301 Query: 61 T 61 Sbjct: 302 R 302 >gi|156976230|ref|YP_001447136.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156527824|gb|ABU72909.1| hypothetical protein VIBHAR_05002 [Vibrio harveyi ATCC BAA-1116] Length = 345 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + N GD+ +Q ILGH+++ T Y++ + +M+ Sbjct: 291 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQAVH 339 >gi|295093966|emb|CBK83057.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 432 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + + Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419 >gi|119714032|ref|YP_919174.1| phage integrase family protein [Nocardioides sp. JS614] gi|119525941|gb|ABL79311.1| phage integrase family protein [Nocardioides sp. JS614] Length = 375 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H LRH A+HL G L++IQ +LGH LSTT Y +V S + Sbjct: 297 SPHVLRHYCASHLYEQGMTLKAIQELLGHGWLSTTTQYIHVRSTHI 342 >gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17] gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17] Length = 407 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RHSFAT+LLS G +++ + +LGHS L TQ Y + + Sbjct: 346 ITWHCGRHSFATNLLSTGANIKVVSELLGHSSLKFTQKYVRALDDQKKAAIN 397 >gi|238925711|ref|YP_002939228.1| integrase [Eubacterium rectale ATCC 33656] gi|238877387|gb|ACR77094.1| integrase [Eubacterium rectale ATCC 33656] Length = 432 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + + Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419 >gi|209516758|ref|ZP_03265610.1| integrase family protein [Burkholderia sp. H160] gi|209502875|gb|EEA02879.1| integrase family protein [Burkholderia sp. H160] Length = 336 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 + HTLRH+ THLL G D+ +I++ LGH + TT IY + Sbjct: 259 VSPHTLRHTAGTHLLRAGVDINTIRAWLGHVSIDTTNIYAETD 301 >gi|161522759|ref|YP_001585688.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160346312|gb|ABX19396.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 274 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+ H LRH+FA H L G D+R +Q +L H+ L TT +YT ++ R + + Sbjct: 96 TSTHWLRHTFANHGLDAGADIRDMQELLDHASLGTTTLYTKADATRQFQSVEA 148 >gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] Length = 396 Score = 70.3 bits (172), Expect = 8e-11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+Y N+ ++ ++ Sbjct: 332 ISFHTARHTNATLLIYSGANITTVQKLLGHKSVKTTQVYANIMDMTIVHDLEKA 385 >gi|255008467|ref|ZP_05280593.1| putative bacteriophage integrase [Bacteroides fragilis 3_1_12] gi|313146195|ref|ZP_07808388.1| site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313134962|gb|EFR52322.1| site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 380 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 323 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 374 >gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18] gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18] Length = 402 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 27/47 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+FA+ + G L +Q +LGH ++ TQ Y +++ + + Sbjct: 344 HDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLSDDGLKKA 390 >gi|218129163|ref|ZP_03457967.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697] gi|217988663|gb|EEC54982.1| hypothetical protein BACEGG_00738 [Bacteroides eggerthii DSM 20697] Length = 385 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 34/53 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTNV ++ ++ Sbjct: 331 ISFHTARHTNATLLIYNGINITTVQKLLGHKSVKTTQVYTNVMDMTIIHDLEK 383 >gi|121593736|ref|YP_985632.1| phage integrase family protein [Acidovorax sp. JS42] gi|120605816|gb|ABM41556.1| phage integrase family protein [Acidovorax sp. JS42] Length = 565 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM-MEIYDQT 56 T H RH+ ATHLL G +L +++ L H+ L+TT +Y + + R ++ D+ Sbjct: 506 ATPHWTRHTHATHLLEGGAELTTVRDNLRHASLATTSMYLHTDDARRAKQVADRF 560 >gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH+ AT LL +G D++++Q LGH+ ++TT IY++V K E D Sbjct: 326 HDLRHTSATLLLESGVDMKTVQERLGHASMNTTSNIYSHVTEKMNREATD 375 >gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] Length = 388 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H LRH+ + L G ++ +Q LGHS + TT IYT+V K + Sbjct: 327 KVSPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKKAKEGAIQKF 382 >gi|218133017|ref|ZP_03461821.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC 43243] gi|217991890|gb|EEC57894.1| hypothetical protein BACPEC_00878 [Bacteroides pectinophilus ATCC 43243] Length = 432 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + + Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419 >gi|312111596|ref|YP_003989912.1| integrase [Geobacillus sp. Y4.1MC1] gi|312112616|ref|YP_003990932.1| integrase [Geobacillus sp. Y4.1MC1] gi|311216697|gb|ADP75301.1| integrase family protein [Geobacillus sp. Y4.1MC1] gi|311217717|gb|ADP76321.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 379 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT-HP 58 + H LRH+ AT D++ +Q LGHS++ TT +Y + + + + E +++ H Sbjct: 307 IHVHPHLLRHTHATMYYQQTKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRENWEKAQHA 366 Query: 59 -SITQKDKKN 67 IT+K K+ Sbjct: 367 FDITKKTGKD 376 >gi|229496267|ref|ZP_04389987.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316845|gb|EEN82758.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 416 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 ++ +AH RH+FAT + L G + ++ +LGHS + TT+ Y V K++ + +++ Sbjct: 349 ITLSAHVGRHTFATLITLERGVPIETVSRMLGHSNIQTTERYAYVTPKKLFDEFERF 405 >gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 343 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S + Sbjct: 287 PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 331 >gi|291524649|emb|CBK90236.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 432 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 HTLRH++ T+LLSNG + +Q +LGHS +STT +Y + + Sbjct: 372 HFHTLRHTYTTNLLSNGAQPKDVQELLGHSDVSTTMNVYAHATREAKR 419 >gi|167761671|ref|ZP_02433798.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC 43183] gi|167700458|gb|EDS17037.1| hypothetical protein BACSTE_00005 [Bacteroides stercoris ATCC 43183] Length = 352 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ ++ ++ Sbjct: 281 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIVHDLEK 334 >gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1] gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22] gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22] gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1] gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22] gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22] Length = 396 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 29/42 (69%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HT RH+ AT LL +G ++ ++Q +LGH + TTQ+Y N+ Sbjct: 332 VSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTTQVYANI 373 >gi|302878141|ref|YP_003846705.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302580930|gb|ADL54941.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 664 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH LRH+ +HL +G L +Q +LGH+ L TT IYT+ + + + + Sbjct: 601 ATAHWLRHTCGSHLALSGVPLNIVQRLLGHTSLQTTSIYTDTSDENLWRAVELA 654 >gi|255690324|ref|ZP_05413999.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260624124|gb|EEX46995.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 130 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 ++ T +T RH+FAT +L+ G DL ++ +LGH+ + TQ+Y + +K+ + + Sbjct: 71 LNIT-YTARHTFATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKKDDAVN 123 >gi|37528603|ref|NP_931948.1| hypothetical protein plu4790 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36788041|emb|CAE17162.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 140 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 28/45 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRH+FA+H + GG++ ++Q ILGH+ + T Y ++ + Sbjct: 82 HVLRHTFASHFVMKGGNIVALQQILGHANIQQTMAYAHLAPDYLQ 126 >gi|296394735|ref|YP_003659619.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181882|gb|ADG98788.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 387 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQT 56 H LRH+ A+ LL G L +Q ILGH+ TT+IY ++ + + + ++ D+ Sbjct: 331 HDLRHTCASRLLRKGVPLSVVQEILGHASSKTTEIYKHLGNSYWEEVRQVLDEY 384 >gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] Length = 229 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT L+ G D+ ++ +L HS L+TTQ+Y +V + + ++ Sbjct: 163 ITFHCFRHTFATLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKRDAAER 215 >gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152] gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152] Length = 290 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 29/47 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H LRH FAT D+R++Q LGHS ++TTQIYT V+ + Sbjct: 236 TMHKLRHRFATTAYRATRDIRAVQEALGHSSVATTQIYTAVDRMEVR 282 >gi|325297479|ref|YP_004257396.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317032|gb|ADY34923.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 409 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSNIQTTQVYARVTPKKLFEDMDRY 398 >gi|322831910|ref|YP_004211937.1| integrase family protein [Rahnella sp. Y9602] gi|321167111|gb|ADW72810.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 AH LRH+FATH + NGG++ ++Q +LGH+ + T Y + + + Sbjct: 270 AHVLRHTFATHFMMNGGNIITLQRVLGHATIQQTMTYAHFAPGYLQDAI 318 >gi|288549717|ref|ZP_06390780.1| site-specific recombinase, phage integrase family [Enterobacter cancerogenus ATCC 35316] gi|288318031|gb|EFC56969.1| site-specific recombinase, phage integrase family [Enterobacter cancerogenus ATCC 35316] Length = 241 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 32/48 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG++ ++Q IL H++++ T +Y + + + + Sbjct: 174 HALRHSFATHFMINGGNIITLQRILDHTKIAQTMVYAHFAPQYLQDAI 221 >gi|189184115|ref|YP_001937900.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180886|dbj|BAG40666.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 107 Score = 70.3 bits (172), Expect = 9e-11, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + T H LR +FAT ++NG +LR+I +LGHSR+STT +IYT ++ +++ ++ Sbjct: 33 NVTIHDLRRTFATWSINNGEELRTIAEMLGHSRISTTAEIYTKISVEKVKAATNK 87 >gi|332829726|gb|EGK02372.1| hypothetical protein HMPREF9455_01642 [Dysgonomonas gadei ATCC BAA-286] Length = 407 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H RHSF T LLS G + S+ ++GH+ ++TTQ+Y + +++ + D+ Sbjct: 335 NLSYHQSRHSFGTLLLSAGVSIESVAKMMGHANINTTQVYAQITEQKISQDMDK 388 >gi|320107593|ref|YP_004183183.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926114|gb|ADV83189.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 419 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H RH+FAT+ L +G D+R++QS LGH +++T +Y Sbjct: 361 HKFRHTFATNHLRDGVDIRTVQSWLGHRDINSTMVYLK 398 >gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 355 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S + Sbjct: 299 PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 343 >gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 361 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHP 58 H +RH+FAT L+ G DL +Q +LGH TQ Y + + + + E + D+ P Sbjct: 283 FHDMRHTFATRLVQRGVDLYKVQRLLGHKTNLMTQRYAHHSPESLREGVKVLDECQP 339 >gi|301060695|ref|ZP_07201510.1| tyrosine recombinase XerC family protein [delta proteobacterium NaphS2] gi|300445092|gb|EFK09042.1| tyrosine recombinase XerC family protein [delta proteobacterium NaphS2] Length = 85 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 30/46 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 + H+LRHS+ATH+L G DL +Q ILGH + TT YT++ S Sbjct: 16 KISCHSLRHSYATHMLEAGVDLIELQQILGHVSVLTTTRYTHLTSN 61 >gi|288927218|ref|ZP_06421085.1| integrase [Prevotella buccae D17] gi|288336012|gb|EFC74426.1| integrase [Prevotella buccae D17] Length = 116 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ +Q Sbjct: 48 TFHMARHTFATMSLSKGVSMESVSKMLGHTNIKTTQIYARITNKKIEHDMEQ 99 >gi|323138768|ref|ZP_08073833.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396015|gb|EFX98551.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 335 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H LRHS A +L D+R + LGH+ + TT+IY ++ +E + P Sbjct: 252 TLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEIYLGMDPSEKLEAVEAVLPPAL 311 Query: 62 QKDK 65 ++ + Sbjct: 312 RRGR 315 >gi|167567539|ref|ZP_02360455.1| site-specific recombinase, phage integrase family protein [Burkholderia oklahomensis EO147] Length = 134 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS +S T+ Y +++ + + P Sbjct: 81 HDLRHTFASWLVMEGVSLYVVKDLLGHSSISVTERYAHLSPDQGRAAVQKLLP 133 >gi|42780063|ref|NP_977310.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196047805|ref|ZP_03114983.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|42735981|gb|AAS39918.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196021061|gb|EDX59790.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] Length = 708 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH++A +L+ G D+ ++Q +L H+ T Y + + +++ Sbjct: 503 HAFRHTYAVKMLNGGADILTVQELLAHASPEMTMRYARLLDDTKRKAFEE 552 >gi|325270579|ref|ZP_08137179.1| integrase [Prevotella multiformis DSM 16608] gi|324987155|gb|EGC19138.1| integrase [Prevotella multiformis DSM 16608] Length = 407 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 342 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 387 >gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 365 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H +RHSFAT LL NG + + + ILGHS + TT +Y++V + Q Sbjct: 305 PIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTTLNVYSHVLPDLQKDTMQQ 359 >gi|315608670|ref|ZP_07883650.1| integrase [Prevotella buccae ATCC 33574] gi|315249639|gb|EFU29648.1| integrase [Prevotella buccae ATCC 33574] Length = 420 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 354 SYHMARHTFGTMSLSAGIPIESIAKMMGHASIASTQIYAQVTDNKISEDMDR 405 >gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] Length = 304 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RH FA + NG D+ ++ +LGHS +STTQ Y E+ + PS Sbjct: 238 VRCSPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDF--ELIKKAMPS 294 >gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] Length = 406 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ +GH ++TTQIY+ + +++M E+ D+ IT Sbjct: 345 KITFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK----IT 400 Query: 62 QKDKK 66 K K+ Sbjct: 401 LKRKE 405 >gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 406 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 349 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 400 >gi|319902468|ref|YP_004162196.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417499|gb|ADV44610.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 410 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS ++TTQ+Y V+ K++ E D+ Sbjct: 348 HQARHSFASLITLEAGVPIETISRMLGHSNITTTQVYARVSPKKLFEDMDRF 399 >gi|330910587|gb|EGH39097.1| putative bacteriophage integrase [Escherichia coli AA86] Length = 345 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ E + +P T Sbjct: 281 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL------ETALRFNPLAT 330 >gi|148975049|ref|ZP_01812029.1| Integrase [Vibrionales bacterium SWAT-3] gi|145965558|gb|EDK30807.1| Integrase [Vibrionales bacterium SWAT-3] Length = 373 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + N GD+ +Q ILGH+++ T Y++ + +M+ Sbjct: 319 HVLRHTFASHFMMNKGDILVLQRILGHTKIEQTMAYSHFAPEHLMQAVH 367 >gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 286 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + +AH LRHSFA++L+ L ++Q +LGHS L T Y + + +++ E + Sbjct: 232 NISAHILRHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQLEEAVN 284 >gi|323693105|ref|ZP_08107324.1| integrase [Clostridium symbiosum WAL-14673] gi|323502859|gb|EGB18702.1| integrase [Clostridium symbiosum WAL-14673] Length = 432 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH+F ++LLSNG + +Q +LGH+ +STT IY + + Sbjct: 372 HFHQLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHSTREAKR 419 >gi|254498879|ref|ZP_05111584.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351864|gb|EET10694.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 335 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HTLRH+ HLL G L I+ LGH + TT+IY N + ++ Sbjct: 258 ISPHTLRHTKGMHLLQGGVSLDIIRDFLGHVDIKTTEIYARANLEMKRAAIEK 310 >gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] Length = 331 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT L+ G L ++ ++GH+ + TT+IY ++ YD Sbjct: 277 PHLLRHTFATRALNKGMPLPTLCDLMGHASVETTRIYAKNGVGKIKYEYDMY 328 >gi|46581232|ref|YP_012040.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450653|gb|AAS97300.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 394 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 30/47 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRH++AT +L G D+ +++ +LGHS ++ T+ Y ++ + Sbjct: 339 HTLRHTYATRMLEAGIDIYTLKELLGHSSVAVTERYLHLCDRAKRNA 385 >gi|298251414|ref|ZP_06975217.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546006|gb|EFH79874.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 350 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHSFA +L G L +Q +LGHSRLSTT IY + + + ++ Sbjct: 280 TAAPHQLRHSFARRMLKTGAQLPEVQRMLGHSRLSTTGIYLTPSEEDIRAAVERA 334 >gi|212695061|ref|ZP_03303189.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855] gi|212662377|gb|EEB22951.1| hypothetical protein BACDOR_04599 [Bacteroides dorei DSM 17855] Length = 410 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH++AT + LSN + ++ +LGH + TTQIY + +++M ++ I Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKMSRDMEKLAQRI 399 Query: 61 TQKD 64 Q + Sbjct: 400 EQME 403 >gi|227535878|ref|ZP_03965927.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227244366|gb|EEI94381.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 86 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T HT RH+FAT ++ G L S+ ++GH +STTQIY + S+++ + D Sbjct: 12 KVTFHTARHTFATMFVTEGVPLESLSKMMGHKNISTTQIYAKITSQKISKDMD 64 >gi|330507934|ref|YP_004384362.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6] gi|328928742|gb|AEB68544.1| site-specific integrase/recombinase [Methanosaeta concilii GP-6] Length = 279 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTL-RHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH+ AT +++NG D+R ++ +L H + TT Y +V K + E Y+Q Sbjct: 225 HVFSRHTPATLMIANGCDIRIVKELLRHRDIRTTLRYAHVADKTLRERYNQC 276 >gi|51571648|emb|CAH19070.1| DNA integrase [Pseudomonas aeruginosa] Length = 305 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/33 (60%), Positives = 25/33 (75%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSR 34 T HTLRHSFAT LL +G D+R++Q +LGHS Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHSD 305 >gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 275 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 33/46 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T+AH LRHS A+H ++NG ++R +Q LGHS+L TT+ Y ++N Sbjct: 221 KTSAHWLRHSHASHAINNGCNVRLLQESLGHSKLETTEKYLHINPN 266 >gi|33867240|ref|NP_898798.1| putative transposase [Rhodococcus erythropolis] gi|33669074|gb|AAP74068.1| putative transposase [Rhodococcus erythropolis] Length = 373 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+F T + G DL +Q++LGH+ + TT Y ++ + +D + + Sbjct: 313 HPHALRHTFGTAMAEAGVDLAVMQALLGHAHVDTTARYIHLTPTHVKAEFDAARTRLRTR 372 >gi|295102658|emb|CBL00203.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 485 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRHS A+ L +NG L+ IQ LGHS +STT IYT+++ Sbjct: 423 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLDFS 466 >gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 379 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H LRH+FAT LL + + + +Q +LGH+ + TT Y++V + Q Sbjct: 319 EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPNMQKDAASQ 373 >gi|298674433|ref|YP_003726183.1| integrase family protein [Methanohalobium evestigatum Z-7303] gi|298287421|gb|ADI73387.1| integrase family protein [Methanohalobium evestigatum Z-7303] Length = 282 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH RH A + + NG D+R++Q LGH+ L+TT IY ++YD+ Sbjct: 192 SAHKFRHGHAIYCIQNGMDIRTLQLQLGHTDLATTAIYLQFAIDDRTKVYDK 243 >gi|293372242|ref|ZP_06618627.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632684|gb|EFF51277.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 436 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53 + T H RH+FAT + LS+G + ++ +LGH+ + TTQIY + + + E+Y Sbjct: 361 NITFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELY 420 Query: 54 DQTHPSITQKDKKN 67 + +QK N Sbjct: 421 TR---KESQKSPDN 431 >gi|253573841|ref|ZP_04851184.1| DNA integration/recombination/inversion protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251847369|gb|EES75374.1| DNA integration/recombination/inversion protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 356 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRHSFAT D+ +++ LGH+ + TT IYT++ + M + + Sbjct: 302 TVHALRHSFATRYHQENNDVPRLKNQLGHASIQTTMIYTHLTDEEMRKAVNN 353 >gi|169826079|ref|YP_001696237.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41] gi|168990567|gb|ACA38107.1| prophage Lp3 protein 1, integrase [Lysinibacillus sphaericus C3-41] Length = 390 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + T H LRH+ + L G L+ +Q LGHS + TT IY +V K E + Sbjct: 329 TITTHGLRHTHCSLLFEAGASLKEVQDRLGHSDVQTTMNIYAHVTKKAKEEAIQKF 384 >gi|83860039|ref|ZP_00953559.1| transposase [Oceanicaulis alexandrii HTCC2633] gi|83852398|gb|EAP90252.1| transposase [Oceanicaulis alexandrii HTCC2633] Length = 615 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/30 (66%), Positives = 25/30 (83%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGH 32 + HTLRHSFATHLL +G D+R IQ++LGH Sbjct: 237 VSPHTLRHSFATHLLEDGTDIRIIQALLGH 266 >gi|328957208|ref|YP_004374594.1| putative phage integrase [Carnobacterium sp. 17-4] gi|328673532|gb|AEB29578.1| putative phage integrase [Carnobacterium sp. 17-4] Length = 382 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L G ++ +Q LGHS + TT IY +V K D+ Sbjct: 322 ITPHGFRHTHCSLLFEAGASVKEVQDRLGHSNIQTTMNIYAHVTEKAKENTADKF 376 >gi|154502883|ref|ZP_02039943.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149] gi|153796422|gb|EDN78842.1| hypothetical protein RUMGNA_00703 [Ruminococcus gnavus ATCC 29149] Length = 401 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+LL G D +++Q + GH TT IY V + + ++ +Q Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQA 396 >gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 382 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH+FAT L+ G DL ++ +LGH + +TQ+Y + + D+ Sbjct: 322 KVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQAIDRF 376 >gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106] gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106] Length = 345 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 28/43 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + + H+LRH+ T L +G +LR +Q +LGH+ TT IY +V Sbjct: 270 TLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHV 312 >gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 331 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 29/60 (48%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHS A LL G D I LGH + TTQIY + N + D+ P T+ Sbjct: 255 VTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDANLQIKQAALDKVQPLGTR 314 >gi|253565735|ref|ZP_04843190.1| transposase [Bacteroides sp. 3_2_5] gi|251946014|gb|EES86421.1| transposase [Bacteroides sp. 3_2_5] Length = 217 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V K++ E D+ Sbjct: 155 HMGRHSFASLVTLEEGVPIETICKMLGHSNIKTTQIYARVTPKKLFEDMDRF 206 >gi|126660458|ref|ZP_01731567.1| Tn554, transposase B [Cyanothece sp. CCY0110] gi|126618271|gb|EAZ89031.1| Tn554, transposase B [Cyanothece sp. CCY0110] Length = 640 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H RH+ T +++ G +Q LGH + TQ+Y +++ + + + ++ H Sbjct: 468 HQFRHTVGTRMINAGVPQHIVQRYLGHESPTMTQVYAHIHDQTLRKEIEKYH 519 >gi|85707507|ref|ZP_01038583.1| putative integrase/recombinase [Roseovarius sp. 217] gi|85667964|gb|EAQ22849.1| putative integrase/recombinase [Roseovarius sp. 217] Length = 313 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHS A +L D+R + LGH+ + TT+ Y V++ + +E + P Sbjct: 252 SVSPHQLRHSCAVIMLEATRDIRKVALWLGHADIRTTETYLRVDAAQKLEAVEAVIPPEL 311 Query: 62 QK 63 ++ Sbjct: 312 RR 313 >gi|332885048|gb|EGK05301.1| hypothetical protein HMPREF9456_02971 [Dysgonomonas mossii DSM 22836] Length = 92 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+ A HLL G L I+ ILGHS + TT+IY +SK+ E ++ + ++ Sbjct: 11 ISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSP 70 Query: 63 K 63 Sbjct: 71 N 71 >gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08] Length = 342 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+FAT LS+G D+ ++ ++GH +L TTQIY V ++ + D Sbjct: 284 VHMHVSRHTFATLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVDA 336 >gi|260593259|ref|ZP_05858717.1| integrase [Prevotella veroralis F0319] gi|260534816|gb|EEX17433.1| integrase [Prevotella veroralis F0319] Length = 414 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 348 SYHMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 399 >gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6] gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF] gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6] gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H LRH+ A+ LL G +++ +Q LGHS + T +Y ++ KR + Q Sbjct: 322 ITIHGLRHTHASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRKEKTATQF 376 >gi|160945698|ref|ZP_02092924.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii M21/2] gi|158443429|gb|EDP20434.1| hypothetical protein FAEPRAM212_03229 [Faecalibacterium prausnitzii M21/2] Length = 498 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRHS A+ L +NG L+ IQ LGHS +STT IYT+++ Sbjct: 436 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLDFS 479 >gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 374 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH++AT L+ NG D++++ ++GH+ + TT IY + + Sbjct: 309 INFHALRHTYATRLIENGIDVKTVSMLVGHADIQTTLNIYVHSTDDTKKNAVN 361 >gi|150010080|ref|YP_001304823.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149938504|gb|ABR45201.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 402 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + + H RHSFA L+ G + S+ ILGH+ ++TTQIY V + ++ Sbjct: 338 NISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKL 385 >gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 414 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52 H+LRH+F T ++ G +L+++Q ILGHS +STT IY + + EI Sbjct: 349 HSLRHTFTTRMVEAGTNLKAMQDILGHSDISTTMNIYAEASKD-LKEI 395 >gi|282890473|ref|ZP_06298996.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499470|gb|EFB41766.1| hypothetical protein pah_c022o041 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 167 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HT+RH+ ATHLL G D+ +I++ LGH ++TT IY V+ + + Sbjct: 90 ISPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVDLEMKAKAL 140 >gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4] gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4] Length = 414 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT LL++G +L+++Q +LGH R+STT +Y V + + Sbjct: 356 FHALRHTFATLLLASGEELKNVQELLGHERISTTADVYAEVLEDAKKKAVTR 407 >gi|186474623|ref|YP_001863594.1| integrase family protein [Burkholderia phymatum STM815] gi|184198582|gb|ACC76544.1| integrase family protein [Burkholderia phymatum STM815] Length = 343 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 27/59 (45%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRH+ A LL G D +I LGH+ L+TT Y + + Q P I Sbjct: 262 EIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320 >gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 404 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H LRH+FAT LL + + + +Q +LGH+ + TT Y++V + Q Sbjct: 344 EITMHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSHVLPNMQKDAASQ 398 >gi|32471173|ref|NP_864166.1| integrase [Rhodopirellula baltica SH 1] gi|32396875|emb|CAD71843.1| integrase [Rhodopirellula baltica SH 1] Length = 195 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55 T HTLRHS+AT +L G +L+ +Q LGH L T++Y ++ +R +I Q Sbjct: 129 TPHTLRHSYATAMLDAGVNLKVLQGYLGHKNLQATEVYLHLTRLGDERARQIVAQ 183 >gi|197302663|ref|ZP_03167717.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC 29176] gi|197298245|gb|EDY32791.1| hypothetical protein RUMLAC_01393 [Ruminococcus lactaris ATCC 29176] Length = 377 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 HTLRH+FAT + G D++ + +LGHS +STT Y + + E + Sbjct: 313 VHFHTLRHTFATRCIEFGCDIKILSEMLGHSNISTTLNRYVHPSMDFKRENILK 366 >gi|160932491|ref|ZP_02079881.1| hypothetical protein CLOLEP_01329 [Clostridium leptum DSM 753] gi|156868450|gb|EDO61822.1| hypothetical protein CLOLEP_01329 [Clostridium leptum DSM 753] Length = 361 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48 + T H LRH++AT L +G D+ + +LGH TT IYT++ + Sbjct: 271 NITPHMLRHTYATILYISGVDILNAAKLLGHEDPKTTLVIYTHLTKEF 318 >gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021] gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021] Length = 310 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G DLR +Q LGH L T Y ++ S + Sbjct: 254 PHILRHTCASRLVRGGIDLRRVQMWLGHQTLEMTMRYAHLASHDL 298 >gi|332654935|ref|ZP_08420677.1| putative phage integrase [Ruminococcaceae bacterium D16] gi|332516278|gb|EGJ45886.1| putative phage integrase [Ruminococcaceae bacterium D16] Length = 401 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+LL G D +++Q + GH TT IY V + + ++ +Q Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFDVVNQA 396 >gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] Length = 304 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + + HT RH FA + NG D+ ++ +LGHS +STTQ Y E+ + PS Sbjct: 238 VRCSPHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDF--ELIKKAMPS 294 >gi|320087105|emb|CBY96873.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 349 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+F H + NGG++ +Q ILGH+ + T Y++ + + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAV 331 >gi|255535352|ref|YP_003095723.1| probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255341548|gb|ACU07661.1| probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 253 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 HTLRHS+ATHLL +G + +Q +LGH R+ +T Y + Sbjct: 207 EVHTHTLRHSYATHLLEDGVPIIMVQKLLGHERIESTMEYLH 248 >gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] Length = 419 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+FAT L+ G DL ++ +LGH + TTQIY + + ++ Sbjct: 289 FKLHFHVSRHTFATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQA 343 >gi|312111597|ref|YP_003989913.1| integrase [Geobacillus sp. Y4.1MC1] gi|312112615|ref|YP_003990931.1| integrase [Geobacillus sp. Y4.1MC1] gi|311216698|gb|ADP75302.1| integrase family protein [Geobacillus sp. Y4.1MC1] gi|311217716|gb|ADP76320.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 703 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH++A +L++G D+ ++Q +L H+ T Y + + +++ Sbjct: 504 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEA 554 >gi|237742699|ref|ZP_04573180.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13] gi|229430347|gb|EEO40559.1| tyrosine recombinase xerC [Fusobacterium sp. 4_1_13] Length = 414 Score = 69.9 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+ AT + S G DL+ IQ LGHS +STT IY + ++ + E+ + Sbjct: 352 SIHELRHTCATLMYSEGVDLKKIQYWLGHSNISTTANIYAHYDNSKNFEVIGK 404 >gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411] gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411] Length = 370 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FA+ L G + +I+ ++GH L+ T+ Y+++ E ++ Sbjct: 312 KVVFHTLRHTFASWLAIQGTPIYTIKELMGHKTLAMTERYSHLIPDAKREAVEK 365 >gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 380 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 323 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 374 >gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 393 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H+ RH+ AT +++ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 336 ITFHSARHTHATMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESKEKAID 387 >gi|41057380|ref|NP_958084.1| gp27 [Enterobacteria phage PsP3] gi|37548586|gb|AAN08390.1| gp27 [Enterobacteria phage PsP3] Length = 349 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+F H + NGG++ +Q ILGH+ + T Y++ + + Sbjct: 284 HVLRHTFGAHFMMNGGNILVLQKILGHANIRETMKYSHFAPDHLEQAV 331 >gi|332884809|gb|EGK05065.1| hypothetical protein HMPREF9456_03218 [Dysgonomonas mossii DSM 22836] gi|332885880|gb|EGK06126.1| hypothetical protein HMPREF9456_02390 [Dysgonomonas mossii DSM 22836] Length = 98 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HTLRH+ A HLL G L I+ ILGHS + TT+IY +SK+ E ++ + ++ Sbjct: 17 ISCHTLRHTKAMHLLQAGVILHHIRDILGHSSVMTTEIYARSDSKQKREAIERAYLRLSP 76 Query: 63 K 63 Sbjct: 77 N 77 >gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 386 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR-MMEIYDQT 56 H LRH+FAT L G R+IQ+ILGH+ ++TT IYT+V + + Y Sbjct: 322 FHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYTHVLKDQTIKSAYKLH 375 >gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii LLAP12] gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii LLAP12] Length = 326 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLS-NGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 ++ TAHTLRH+FAT L N G L + ++GH ++TT IYT + +++ E +++ Sbjct: 263 INVTAHTLRHTFATQFLQANPGCLVELAMLMGHESVNTTAIYTKASKEKLAEHMERS 319 >gi|238756569|ref|ZP_04617868.1| Integrase [Yersinia ruckeri ATCC 29473] gi|238705195|gb|EEP97613.1| Integrase [Yersinia ruckeri ATCC 29473] Length = 156 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH FA+H + GG++ +Q ILGHS + T Y++ + Sbjct: 98 HVLRHRFASHFMMGGGNILVLQQILGHSSIVMTMRYSHFAPDHL 141 >gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2] gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2] Length = 377 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H RH+ A+ L G ++ +QS LGHS + TT +YT+V+ ++ ++ Sbjct: 317 ISIHGFRHTHASLLFEAGASIKDVQSRLGHSDIQTTMDVYTHVSKTAKEQLANRF 371 >gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRH+ T L++ G DL +I+ I GH +S+T+IY +V + + + + HP Sbjct: 245 TVHKLRHTCFTMLMNAGVDLPTIKDIAGHESISSTEIYVHVTQRGVRKAMAR-HP 298 >gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 324 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 25/43 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + HT RH FA L+ D+ IQ +LGH+ + TT+IY Sbjct: 261 IRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLR 303 >gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 384 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRH FA+ L+S G DL ++Q +L H + TQ Y ++ K + + + + + +K+ Sbjct: 312 HGLRHHFASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDAVNLSDSLLEKKE 370 >gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7] Length = 373 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH+FAT L+ G DL ++ +LGH + +TQ+Y + + D+ Sbjct: 313 KVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIISTQVYAKIIDASKRQAIDRF 367 >gi|168184229|ref|ZP_02618893.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] gi|182672699|gb|EDT84660.1| CAAX amino terminal protease family protein [Clostridium botulinum Bf] Length = 355 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 33/51 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + T H LRH++AT L+SNG D +++ +LGH+ T + Y++VN M + Sbjct: 297 NITVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMMKKA 347 >gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 393 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 H LRH+ AT LL G +++ IQ LGHS+L+TT Y++V K Sbjct: 329 FHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 372 >gi|294507521|ref|YP_003571579.1| Tyrosine recombinase xerD [Salinibacter ruber M8] gi|294343849|emb|CBH24627.1| Tyrosine recombinase xerD [Salinibacter ruber M8] Length = 360 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 23/42 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H RH+ A+H L G DL ++ LGH + TT+ Y + Sbjct: 300 EVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLH 341 >gi|225377527|ref|ZP_03754748.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM 16841] gi|225210604|gb|EEG92958.1| hypothetical protein ROSEINA2194_03177 [Roseburia inulinivorans DSM 16841] Length = 258 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGHS +STT IY +V + E + Sbjct: 199 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAEEFK 250 >gi|237719265|ref|ZP_04549746.1| integrase [Bacteroides sp. 2_2_4] gi|229451644|gb|EEO57435.1| integrase [Bacteroides sp. 2_2_4] Length = 420 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 11/74 (14%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEIY 53 + T H RH+FAT + LS+G + ++ +LGH+ + TTQIY + + + E+Y Sbjct: 345 NITFHMARHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKELY 404 Query: 54 DQTHPSITQKDKKN 67 + +QK N Sbjct: 405 TR---KESQKSPDN 415 >gi|154499800|ref|ZP_02037838.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC 29799] gi|150271398|gb|EDM98655.1| hypothetical protein BACCAP_03457 [Bacteroides capillosus ATCC 29799] Length = 385 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 + H LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 325 SVHNLRHTFCTRLCESTNDIKFIQQVMGHADFSTTMDIYTHITQESMEE 373 >gi|325860441|ref|ZP_08173553.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482099|gb|EGC85120.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 414 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S TQIY V ++ E D + +K Sbjct: 348 SYHMARHTFGTMSLSAGIPIESIAKMMGHASISGTQIYAQVTDNKISEDMD----RLIRK 403 Query: 64 DKKN 67 +K Sbjct: 404 HQKE 407 >gi|256851408|ref|ZP_05556797.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260660829|ref|ZP_05861744.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|282933142|ref|ZP_06338529.1| prophage integrase [Lactobacillus jensenii 208-1] gi|256616470|gb|EEU21658.1| Lj965 prophage integrase [Lactobacillus jensenii 27-2-CHN] gi|260548551|gb|EEX24526.1| Lj965 prophage integrase [Lactobacillus jensenii 115-3-CHN] gi|281302646|gb|EFA94861.1| prophage integrase [Lactobacillus jensenii 208-1] Length = 375 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 3 TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T H RH+FAT L+ +++Q +LGHS + T IYT++N+K E + Sbjct: 315 ITVHGFRHTFATLLISETNVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAVN 368 >gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 410 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH+ A+ L+ G DL +Q LGHS TQ Y++V + + Sbjct: 339 SFHCLRHTCASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVADASIANAFRA 390 >gi|332885141|gb|EGK05392.1| hypothetical protein HMPREF9456_02593 [Dysgonomonas mossii DSM 22836] Length = 480 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H RH+FAT L+ G + S+ +LGH+ + TTQIY + ++ + Sbjct: 340 NLSYHLARHTFATLTLTKGVSIESVSKMLGHTNIKTTQIYARITDVKVSNDMASFAEKLE 399 Query: 62 QKDKKN 67 +K K+ Sbjct: 400 EKRTKS 405 >gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 376 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGHS +STT IY +V + + Sbjct: 317 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAAEFK 368 >gi|223369868|gb|ACM88802.1| integrase [uncultured bacterium] Length = 163 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/41 (51%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + HTLR SF HLL NG ++ ++Q +LG +STT IYT+V Sbjct: 122 SCHTLRLSFPPHLLKNGYNIPTVQELLGIKDVSTTMIYTHV 162 >gi|138897051|ref|YP_001127504.1| transposition regulatory protein TnpB [Geobacillus thermodenitrificans NG80-2] gi|134268564|gb|ABO68759.1| Transposition regulatory protein TnpB [Geobacillus thermodenitrificans NG80-2] Length = 704 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH++A +L++G D+ ++Q +L H+ T Y + + +++ Sbjct: 505 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTMRYAKLLDNTKRKAFEEA 555 >gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium difficile QCD-66c26] gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium difficile CIP 107932] gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium difficile ATCC 43255] gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium difficile QCD-76w55] gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium difficile QCD-97b34] gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium difficile QCD-37x79] gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium difficile CD196] gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase family protein [Clostridium difficile QCD-32g58] gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile CD196] gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] Length = 376 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H+LRH+ AT LL NG +++ IQ+ LGHS+LSTT Y++V K E D Sbjct: 318 HFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMKNETVD 369 >gi|307566138|ref|ZP_07628595.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345150|gb|EFN90530.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 324 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 252 SYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 303 >gi|302538708|ref|ZP_07291050.1| predicted protein [Streptomyces sp. C] gi|302447603|gb|EFL19419.1| predicted protein [Streptomyces sp. C] Length = 354 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LR + ATH G DL ++Q +LGH +++T Y + K + + + + Sbjct: 292 TPHALRRACATHQYERGMDLIAVQQLLGHRHIASTMAYVKPSQKFVEDAWRRA 344 >gi|268526582|gb|ACZ05623.1| Int2 [Serratia proteamaculans] Length = 236 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HT RHSFA HLL N + +QS +GH +T+IYT V Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208 >gi|115374695|ref|ZP_01461972.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1] gi|310822738|ref|YP_003955096.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368266|gb|EAU67224.1| putative bacteriophage integrase [Stigmatella aurantiaca DW4/3-1] gi|309395810|gb|ADO73269.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 406 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH++A+HL G L+ IQ ++GH + T+ Y +++ E Sbjct: 334 HDLRHTYASHLAMRGIPLKVIQELMGHVTIEMTERYAHLSPDTRREAV 381 >gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 372 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ +GH ++TTQIY+ + +++M E+ D+ IT Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQAYMGHKNITTTQIYSKMAAQQMCEVVDK----IT 366 Query: 62 QKDKK 66 K K+ Sbjct: 367 LKRKE 371 >gi|229010701|ref|ZP_04167898.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048] gi|228750375|gb|EEM00204.1| Tn554-related, transposase A [Bacillus mycoides DSM 2048] Length = 350 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 ++ H RH+ AT D++ +Q LGHS++ TT +Y + + + + + +++ Sbjct: 280 INVHPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTTMNLYLHPSDEEIRKDWEKA 336 >gi|167758606|ref|ZP_02430733.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704] gi|167663802|gb|EDS07932.1| hypothetical protein CLOSCI_00946 [Clostridium scindens ATCC 35704] Length = 346 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 ++ H RH+ A HL +G DL I LGH +L TT IY + +++ + + Sbjct: 263 LNVHPHLWRHTRAMHLYQHGMDLTLISQWLGHKQLETTLIYAHADTEAKRKAITEA 318 >gi|307323013|ref|ZP_07602264.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891340|gb|EFN22275.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 328 Score = 69.5 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S + H LRHS A H+L D+R + LGH+ L + +IY + +E+ D P Sbjct: 251 SISPHVLRHSCAMHMLQATRDIRKVALWLGHASLQSAEIYLRADPTEKLEMLDALAPLGI 310 Query: 62 QKDK 65 + K Sbjct: 311 KPGK 314 >gi|240173390|ref|ZP_04752048.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 346 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH++ T L S G DL ++++++GH+ TT Y +++ +++ Y Sbjct: 282 IRVRPHRLRHTYGTELASAGIDLLALRALMGHASPETTARYVHLSLEQLAAEYGAA 337 >gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] Length = 379 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 H LRH+ AT LL G + + IQ LGHS+LSTT Y++V +K Sbjct: 320 FHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNK 363 >gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] Length = 371 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H LRH+ AT LL + +++ IQ LGHS +STT +Y++V K E + Sbjct: 309 IPIKFHNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQKTEAEAIAKF 365 >gi|71281181|ref|YP_267649.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71146921|gb|AAZ27394.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 334 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + NGG++ ++ ILGH+R+ T Y + + + Sbjct: 280 HALRHTFASHFMMNGGNILVLKEILGHARIEETMKYAHFCKTHLHDAVM 328 >gi|171317907|ref|ZP_02907083.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171096914|gb|EDT41786.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 283 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y ++ E H Sbjct: 231 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAPHMGREAVRTLH 282 >gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+ + N D+ ++Q++LGHS S T+ Y ++ + + + Sbjct: 289 FHDLRHTFASWVAMNSKDIYAVQNLLGHSSPSVTKRYAHLTDDYLRSVVE 338 >gi|315608474|ref|ZP_07883461.1| integrase [Prevotella buccae ATCC 33574] gi|315249800|gb|EFU29802.1| integrase [Prevotella buccae ATCC 33574] Length = 438 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418 >gi|210612354|ref|ZP_03289279.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787] gi|319937022|ref|ZP_08011432.1| integrase [Coprobacillus sp. 29_1] gi|210151614|gb|EEA82621.1| hypothetical protein CLONEX_01480 [Clostridium nexile DSM 1787] gi|319807958|gb|EFW04537.1| integrase [Coprobacillus sp. 29_1] Length = 432 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH++ ++LLSNG + +Q +LGH+ +STT IY + + Sbjct: 372 HFHMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHATREAKR 419 >gi|67923785|ref|ZP_00517248.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67854373|gb|EAM49669.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 362 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|311694590|gb|ADP97463.1| resolvase [marine bacterium HP15] Length = 198 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFA HLL G L+ + +LGH + +T++YTNV Sbjct: 140 FKIGCHTFRHSFAVHLLLYGRPLKFVSQLLGHRSVESTEVYTNV 183 >gi|301308314|ref|ZP_07214268.1| integrase [Bacteroides sp. 20_3] gi|300833784|gb|EFK64400.1| integrase [Bacteroides sp. 20_3] Length = 409 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +S+TQ+Y V+ K++ E D+ Sbjct: 347 HQARHSFASLITLEAGVPIETISRMLGHSDISSTQVYARVSPKKLFEDMDKF 398 >gi|229012556|ref|ZP_04169730.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048] gi|228748716|gb|EEL98567.1| Transposition regulatory protein TnpA [Bacillus mycoides DSM 2048] Length = 373 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 ++ H RH+ AT D++ +Q LGHS++ TT +Y + + + + E++++ Sbjct: 307 INLHPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSDEDIREVWEKA 363 >gi|332829744|gb|EGK02390.1| hypothetical protein HMPREF9455_01660 [Dysgonomonas gadei ATCC BAA-286] Length = 453 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T+H RH+ AT + LS G + ++ +LGHS ++TTQIY + + ++ + Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKISK 391 >gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 379 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T H RH+ AT LL+ G DL ++ +LGH+ + TTQIY V+ ++ I Sbjct: 322 ITFHVARHTHATMLLTLGADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAI 372 >gi|319642541|ref|ZP_07997190.1| integrase [Bacteroides sp. 3_1_40A] gi|317385832|gb|EFV66762.1| integrase [Bacteroides sp. 3_1_40A] Length = 71 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS + TTQIY V KR+ E D+ Sbjct: 9 HMGRHSFASLVTLEEGVPIETISKMLGHSNIKTTQIYARVTPKRLFEDMDRF 60 >gi|332884799|gb|EGK05055.1| hypothetical protein HMPREF9456_03208 [Dysgonomonas mossii DSM 22836] Length = 405 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RHSFAT + LSNG + S+ +LGH + TTQIY + ++ + + I Sbjct: 341 TLTFHIARHSFATSIALSNGVPIESVSKMLGHKDIKTTQIYAKITDLKVSKDMEDLSKRI 400 Query: 61 TQK 63 K Sbjct: 401 NMK 403 >gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 409 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGHS +STT IY +V + + Sbjct: 350 SCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTTLNIYADVTKEMKAAEFK 401 >gi|268609724|ref|ZP_06143451.1| phage-specific recombinase/integrase XerD [Ruminococcus flavefaciens FD-1] Length = 342 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 TAH RHS A H++ G +L I+ LGH +TT+IY ++++ + + Sbjct: 261 FPITAHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKIDTETKRKAIEAA 316 >gi|153005656|ref|YP_001379981.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029229|gb|ABS26997.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 451 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F +HL G ++IQ + GH L+TTQ Y +++ Sbjct: 336 HILRHTFCSHLAMQGATAKAIQELAGHQDLTTTQRYMHLSPAHKDAAIR 384 >gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 306 Score = 69.5 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + +GGD+ S+Q ILGHS + T Y N+ + E D+ +P Sbjct: 243 VRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYVNLFGSALKEQNDKFNP 300 >gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36] Length = 387 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LL+ G DL ++ ILGH + T++Y + K+ +E + Sbjct: 329 ITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIETMN 380 >gi|325678186|ref|ZP_08157815.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324110078|gb|EGC04265.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 324 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQI-YTNVNSKRMMEIYDQ 55 H LRH+FAT L+ G D++ + +LGHS ++ T Y +V ++ + Sbjct: 269 HALRHTFATLLIRRGVDIKMVSELLGHSDVTITMKFYYHVVEEQKNTAIRK 319 >gi|262039474|ref|ZP_06012777.1| site-specific recombinase, phage integrase family [Leptotrichia goodfellowii F0264] gi|261746503|gb|EEY34039.1| site-specific recombinase, phage integrase family [Leptotrichia goodfellowii F0264] Length = 323 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H+LRH+FAT + +G D +++ ILGH+ ++TT ++YT+ + + Sbjct: 264 FHSLRHTFATTAIESGIDYKTVSEILGHASVNTTLELYTHPKIEHKKK 311 >gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 311 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 8 LRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 LRHS A++L+ NG D+R++ I+GH +S T YT+ + Sbjct: 258 LRHSAASYLIMNGVDIRTVAEIMGHRNISQTMKYTHFLDDHKLSAI 303 >gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] Length = 375 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 3 TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 T H RH+FAT L+ +++Q +LGHS + T IYT++N+K E + Sbjct: 315 ITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAVN 368 >gi|188535993|ref|YP_001911105.1| Putative integrase [Erwinia tasmaniensis Et1/99] gi|188027159|emb|CAO94983.1| Putative integrases, DNA breaking-rejoining enzymes [Erwinia tasmaniensis Et1/99] Length = 309 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIY 53 + + HT RHS+A ++L+ G R + +++GH L T IYT V R+ Y Sbjct: 224 VPVSPHTFRHSYAMYMLNAGVTDRLLMALMGHRSLKTLGIYTRVFALDRLSGSY 277 >gi|25169070|emb|CAD47906.1| putative transposase [Arthrobacter nicotinovorans] Length = 368 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 H RH++AT LL G + I S+LGH+ ++TT +Y ++ + +++ Sbjct: 306 PHWFRHTYATRLLRAGTPIEVISSLLGHASVATTIDVYGHLTVEDARRAFEKA 358 >gi|302562820|ref|ZP_07315162.1| transposase A [Streptomyces griseoflavus Tu4000] gi|302480438|gb|EFL43531.1| transposase A [Streptomyces griseoflavus Tu4000] Length = 271 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS ATH L G D +Q +LGH+ + Y +V+ D+ Sbjct: 213 PHMLRHSAATHWLREGVDRDVVQKLLGHASPLSMDRYRHVDESETRAAVDRA 264 >gi|258649152|ref|ZP_05736621.1| integrase [Prevotella tannerae ATCC 51259] gi|260850814|gb|EEX70683.1| integrase [Prevotella tannerae ATCC 51259] Length = 407 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + S+ +LGH+ L TTQIY + +K++ Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNLKTTQIYARITNKKI 387 >gi|38637747|ref|NP_942721.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527085|gb|AAP85835.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 87 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H++RHS ATHLL +G D+ ++++ LGH + TT +Y ++ + + Sbjct: 9 VSPHSIRHSTATHLLRSGVDINTVRAWLGHVSIDTTNVYAEIDLEMKANALAR 61 >gi|23320701|gb|AAN16072.1| integron integrase [uncultured bacterium] Length = 292 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/35 (62%), Positives = 28/35 (80%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLST 37 + HTLRHSFATHLL++G D+R+IQ +LGH L T Sbjct: 258 ASVHTLRHSFATHLLADGTDIRTIQLLLGHRSLKT 292 >gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 427 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V ++ + Sbjct: 343 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 395 >gi|260593040|ref|ZP_05858498.1| integrase [Prevotella veroralis F0319] gi|260535012|gb|EEX17629.1| integrase [Prevotella veroralis F0319] Length = 438 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418 >gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175] Length = 381 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49 T+H RH+ A+ L G L+ +Q LGH+ + TT IYT+V ++ Sbjct: 320 KITSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368 >gi|227537674|ref|ZP_03967723.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242288|gb|EEI92303.1| phage integrase family protein [Sphingobacterium spiritivorum ATCC 33300] Length = 416 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT + LSNG + S+ +LGH+ + TTQIY V ++ E + Sbjct: 350 NLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIYAKVLEHKLSEDMNN 404 >gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] Length = 387 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V ++ + Sbjct: 303 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 355 >gi|291166248|gb|EFE28294.1| transposase [Filifactor alocis ATCC 35896] Length = 411 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H LRH+F + N +++ IQ I+GH+ + TT IY NS + E + Sbjct: 351 SCHHLRHTFCSRFCENETNIKVIQEIMGHASIETTMDIYAEANSDKKKESIEN 403 >gi|258649068|ref|ZP_05736537.1| integrase [Prevotella tannerae ATCC 51259] gi|260850700|gb|EEX70569.1| integrase [Prevotella tannerae ATCC 51259] Length = 438 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT LS G + S+ +LGH+ + TTQIY + +K++ Sbjct: 373 TFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQIYARITNKKI 418 >gi|150007390|ref|YP_001302133.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149935814|gb|ABR42511.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 248 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LGHS +STTQ+Y V+ K++ E D+ Sbjct: 186 HQARHSFASLITLEAGVPIETISRMLGHSDISTTQVYARVSPKKLFEDMDKF 237 >gi|150377511|ref|YP_001314106.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150032058|gb|ABR64173.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 330 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 5/61 (8%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ-----TH 57 T HTLRHS A LL +G D I LGH + TTQIY + + + + Q H Sbjct: 254 VTPHTLRHSTAMELLHHGVDQSVIALWLGHESVETTQIYIHADMRLKEKALSQVARPEAH 313 Query: 58 P 58 P Sbjct: 314 P 314 >gi|148360858|ref|YP_001252065.1| site specific recombinase [Legionella pneumophila str. Corby] gi|296106078|ref|YP_003617778.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99 Alcoy] gi|148282631|gb|ABQ56719.1| site specific recombinase [Legionella pneumophila str. Corby] gi|295647979|gb|ADG23826.1| Site-specific recombinase XerD [Legionella pneumophila 2300/99 Alcoy] Length = 407 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH FA+ L+ G DL +++ +LGHS ++ T Y ++ + + + Sbjct: 351 HDLRHHFASKLVMAGVDLNTVRELLGHSDIAMTLRYAHLAPEHKVNAVRK 400 >gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12] gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12] gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12] Length = 363 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FA L G ++ +I +L H ++S+TQIY V ++++ E Sbjct: 309 ITFHCFRHTFAMLLQEKGVEIYTISKLLAHKQVSSTQIYAKVTNQQVNEAIQ 360 >gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 338 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT----HPSI 60 AH RH++A +L NG L +Q++LGH L+TT IYT V ++ + ++ H Sbjct: 268 AHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIYTKVAAEGLKDVARVAPVLRHLRA 327 Query: 61 TQ 62 T+ Sbjct: 328 TR 329 >gi|167761667|ref|ZP_02433794.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC 43183] gi|167700462|gb|EDS17041.1| hypothetical protein BACSTE_00001 [Bacteroides stercoris ATCC 43183] Length = 123 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+ AT L+ NG ++ ++Q +LGH + TTQ+YTN+ ++ ++ Sbjct: 52 KISFHTARHTNATLLIYNGVNITTVQKLLGHKSVKTTQVYTNIMDMTIVHDLEK 105 >gi|269468487|gb|EEZ80148.1| integrase [uncultured SUP05 cluster bacterium] Length = 116 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+FA+H + NGGD+ S+Q +L HS L+ T Y +++ + ++ Sbjct: 61 STHILRHTFASHFIMNGGDVLSLQKVLNHSTLTMTIKYAHLSPDHLNDVIKYA 113 >gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 389 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-NSKRMMEIYDQ 55 + T H RH+ AT LS G + ++ +LGH+++STTQIY V ++ + ++ Q Sbjct: 330 NVTFHVARHTAATLNLSLGVPIETVSKLLGHTKISTTQIYAKVIDANKKAAVHKQ 384 >gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735] gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735] Length = 427 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V ++ + Sbjct: 343 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 395 >gi|283796749|ref|ZP_06345902.1| phage integrase [Clostridium sp. M62/1] gi|291075635|gb|EFE12999.1| phage integrase [Clostridium sp. M62/1] Length = 403 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+L+ G D +++Q + GH TT IY V + + + + Sbjct: 340 FKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELSSVVNAA 399 >gi|255012221|ref|ZP_05284347.1| putative integrase/transposase [Bacteroides fragilis 3_1_12] gi|313150062|ref|ZP_07812255.1| integrase [Bacteroides fragilis 3_1_12] gi|313138829|gb|EFR56189.1| integrase [Bacteroides fragilis 3_1_12] Length = 393 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ ++ +++ Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384 >gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] Length = 295 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T TLR+SFA HLL +G D R IQ +LG+S L + Y + + + Y Q P I Sbjct: 237 AVTPRTLRYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295 >gi|153855553|ref|ZP_01996669.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814] gi|166030341|ref|ZP_02233170.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC 27755] gi|240145460|ref|ZP_04744061.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|149751974|gb|EDM61905.1| hypothetical protein DORLON_02687 [Dorea longicatena DSM 13814] gi|166029861|gb|EDR48618.1| hypothetical protein DORFOR_00002 [Dorea formicigenerans ATCC 27755] gi|257202433|gb|EEV00718.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|291563120|emb|CBL41936.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 412 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT-HPSITQ 62 H +RH+F + G D + +Q ++GH STT IYT+V + E + S Q Sbjct: 341 PHAIRHTFCSRCFEKGMDAKVVQMLMGHQHYSTTIDIYTHVTETKFEEEIAKFGSVSEKQ 400 Query: 63 KDKKN 67 K +KN Sbjct: 401 KVQKN 405 >gi|332828048|gb|EGK00770.1| hypothetical protein HMPREF9455_03044 [Dysgonomonas gadei ATCC BAA-286] Length = 453 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T+H RH+ AT + LS G + ++ +LGHS ++TTQIY + + ++ + Sbjct: 342 VTSHMGRHTMATTVCLSQGVPIETVSQMLGHSCITTTQIYAKITNDKISK 391 >gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] Length = 386 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ A+ L G ++ ++ LGHS ++TT +YT+V + ++ Sbjct: 326 ITVHGFRHTHASLLFEAGTPMQDVKERLGHSDITTTMNVYTHVTKSEKKKTAEKF 380 >gi|187932918|ref|YP_001886980.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] gi|187721071|gb|ACD22292.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 398 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H+LRH+ AT LLS+G +++++Q LGH +L T +YT+V + D Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTDEMRRNTID 389 >gi|167769658|ref|ZP_02441711.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM 17241] gi|167668019|gb|EDS12149.1| hypothetical protein ANACOL_00992 [Anaerotruncus colihominis DSM 17241] Length = 410 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 + H LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 350 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 398 >gi|159898571|ref|YP_001544818.1| site-specific recombinase XerD-like protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891610|gb|ABX04690.1| Site-specific recombinase XerD-like [Herpetosiphon aurantiacus ATCC 23779] Length = 81 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 25/44 (56%), Positives = 30/44 (68%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 T HTLRHS+ATHLL G +LR IQ LGH TT +YT+V+ Sbjct: 23 ATVHTLRHSWATHLLEAGVNLRIIQLWLGHRSPVTTALYTHVSQ 66 >gi|295099124|emb|CBK88213.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 398 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVN---SKRMMEIYDQT 56 T H LRH++ T+LL G D +++Q + GH TT IY V + ++ + ++ Sbjct: 337 FEVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNRPEELIGVVNRA 396 >gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria seeligeri FSL N1-067] Length = 381 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRM 49 T+H RH+ A+ L G L+ +Q LGH+ + TT IYT+V ++ Sbjct: 320 KITSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368 >gi|307564902|ref|ZP_07627425.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307346388|gb|EFN91702.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 135 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 63 SYHMGRHTFGTMCLSAGVPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 114 >gi|153009974|ref|YP_001371189.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561862|gb|ABS15360.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 315 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 25/47 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|225378538|ref|ZP_03755759.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM 16841] gi|257437991|ref|ZP_05613746.1| phage integrase [Faecalibacterium prausnitzii A2-165] gi|225209641|gb|EEG91995.1| hypothetical protein ROSEINA2194_04206 [Roseburia inulinivorans DSM 16841] gi|257199651|gb|EEU97935.1| phage integrase [Faecalibacterium prausnitzii A2-165] Length = 386 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+L+ G D +++Q + GH TT IY V + + + + Sbjct: 323 FKVTPHMLRHTYITNLIYKGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELSSVVNAA 382 >gi|110800856|ref|YP_695375.1| phage integrase family site specific recombinase [Clostridium perfringens ATCC 13124] gi|110675503|gb|ABG84490.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 354 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 4/57 (7%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + + H LRH++AT L++NG D ++ ILGHS T ++Y++VN+ ++++ H Sbjct: 295 FNISLHELRHTYATKLIANGVDFKTAAKILGHSVEQTMKVYSHVNND----MFNKAH 347 >gi|27383304|ref|NP_774833.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27356478|dbj|BAC53458.1| blr8193 [Bradyrhizobium japonicum USDA 110] Length = 366 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHS A LL +G DL +IQ+ LGH++++TT Y + + M ++ Sbjct: 214 PISPHIFRHSLAMKLLRSGVDLLTIQAWLGHAQVATTHRYAAADVEMMRRGLEKA 268 >gi|240169979|ref|ZP_04748638.1| integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 359 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHS+ +HL+ +G D +Q +GHS STT +YT V + + Sbjct: 295 SVHCLRHSYVSHLIEDGVDPLFVQQQVGHSWASTTAVYTQVGADAKNRMLRAA 347 >gi|228990730|ref|ZP_04150695.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442] gi|228769256|gb|EEM17854.1| Tn554-related, transposase A [Bacillus pseudomycoides DSM 12442] Length = 379 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H RH+ AT D++ +Q LGHS++ TT +Y + + + + + +++ Sbjct: 309 IDVHPHLFRHTHATMYYQETKDIKQVQERLGHSQIQTTMNLYLHPSDEDIRKDWEKA 365 >gi|186471690|ref|YP_001863008.1| integrase family protein [Burkholderia phymatum STM815] gi|184197999|gb|ACC75962.1| integrase family protein [Burkholderia phymatum STM815] Length = 343 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 27/59 (45%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H+LRH+ A LL G D +I LGH+ L+TT Y + + Q P I Sbjct: 262 EIHPHSLRHTTAIQLLKAGVDFATISQWLGHASLNTTMRYARADIDLKRQALAQVFPEI 320 >gi|312890070|ref|ZP_07749614.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311297602|gb|EFQ74727.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 405 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT + L+NG + ++ ++GH+ + TTQIY V ++ Q Sbjct: 345 TFHIARHTFATTVTLNNGVPIETVAKMMGHTSIKTTQIYAKVMDHKISSDMQQ 397 >gi|111020190|ref|YP_703162.1| transposase A [Rhodococcus jostii RHA1] gi|110819720|gb|ABG95004.1| possible transposase A [Rhodococcus jostii RHA1] Length = 374 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT + G ++Q LGH+ +T+IYT V+ ++ + Y Sbjct: 317 TPHALRHTHATAMWEAGMRELALQRRLGHASPESTRIYTRVSDTQVRDEYATA 369 >gi|304383251|ref|ZP_07365721.1| integrase [Prevotella marshii DSM 16973] gi|304335619|gb|EFM01879.1| integrase [Prevotella marshii DSM 16973] Length = 306 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+F T LS G + SI ++GH+ +S+TQIY V ++ E D+ Sbjct: 240 SYHMARHTFGTLSLSAGIPIESIAKMMGHASISSTQIYAQVTDNKISEDMDR 291 >gi|282892377|ref|ZP_06300731.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497832|gb|EFB40192.1| hypothetical protein pah_c249o001 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 119 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 32/51 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + HT+RH+ ATHLL G D+ +I++ LGH ++TT IY V+ + + Sbjct: 51 VSPHTIRHTTATHLLHAGVDINTIRAWLGHVSINTTNIYVEVDLEMKAKAL 101 >gi|126661051|ref|ZP_01732135.1| phage integrase [Cyanothece sp. CCY0110] gi|126617662|gb|EAZ88447.1| phage integrase [Cyanothece sp. CCY0110] Length = 401 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +AH+LRH+ AT L G L +Q +LGH+ TT IY ++ + + Sbjct: 301 KLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMIYAHIGDRWL 348 >gi|308176207|ref|YP_003915613.1| phage integrase family protein [Arthrobacter arilaitensis Re117] gi|307743670|emb|CBT74642.1| phage integrase family protein [Arthrobacter arilaitensis Re117] Length = 360 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRH+F + L ++G DL ++ +LGH+ ++TT Y ++ + YD Q Sbjct: 300 HPHALRHTFGSALAASGVDLSIMRELLGHAHVNTTARYIHLVPAHVKSEYDAAINRQKQ 358 >gi|265765299|ref|ZP_06093574.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263254683|gb|EEZ26117.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 393 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ ++ +++ Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384 >gi|53711957|ref|YP_097949.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60680159|ref|YP_210303.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] gi|52214822|dbj|BAD47415.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60491593|emb|CAH06345.1| putative integrase/transposase [Bacteroides fragilis NCTC 9343] Length = 393 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ ++ +++ Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384 >gi|114566277|ref|YP_753431.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337212|gb|ABI68060.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 340 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A L+ +G DL I+ +LGH + TT++Y ++ + + Sbjct: 260 SPHKMRHTTAMGLVESGVDLIYIRDLLGHESIKTTEVYARADAMHKRQAIEAA 312 >gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07] gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07] Length = 424 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + + H RH+FAT G +++Q LGH+ L T +YT+V + + D+ Sbjct: 330 TFSGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQMTMDLYTHVLENHLSDEMDK 384 >gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] Length = 386 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ A+ L G ++ ++ LGHS ++TT IYT+V + D Sbjct: 326 ITVHGFRHTHASLLFEAGTPMQDVKERLGHSSITTTMNIYTHVTKSAKKKTADNF 380 >gi|260593521|ref|ZP_05858979.1| integrase [Prevotella veroralis F0319] gi|260534509|gb|EEX17126.1| integrase [Prevotella veroralis F0319] Length = 417 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Q Sbjct: 353 TFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLIAQ 412 >gi|251780370|ref|ZP_04823290.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084685|gb|EES50575.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 398 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H+LRH+ AT LLS+G +++++Q LGH +L T +YT+V K D Sbjct: 340 HSLRHTHATMLLSSGANIKAVQERLGHKKLDMTLDVYTHVTDKMRKNTID 389 >gi|83955392|ref|ZP_00964023.1| site-specific integrase/recombinase-like [Sulfitobacter sp. NAS-14.1] gi|83840036|gb|EAP79211.1| site-specific integrase/recombinase-like [Sulfitobacter sp. NAS-14.1] Length = 353 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT +L ++ + +LGH+ + TT Y +V + + D+ Sbjct: 285 FHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDLRNALDRF 336 >gi|296161245|ref|ZP_06844054.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295888586|gb|EFG68395.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 620 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T+ H LRH+F T ++ L +Q I+GH+ L TT Y +RM + H + Sbjct: 557 TSPHALRHTFGTQSVAADVPLDVVQRIMGHASLQTTTTYVTAERRRMRAEASKYHARLAG 616 Query: 63 KDKK 66 +K Sbjct: 617 SGQK 620 >gi|83815097|ref|YP_445629.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855] gi|83756491|gb|ABC44604.1| tyrosine recombinase xerC [Salinibacter ruber DSM 13855] Length = 311 Score = 69.1 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 23/42 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H RH+ A+H L G DL ++ LGH + TT+ Y + Sbjct: 251 EVSPHWFRHAHASHALQKGADLELVRETLGHESIETTKTYLH 292 >gi|218203973|ref|YP_002364826.1| integrase family protein [Cyanothece sp. PCC 8801] gi|218169724|gb|ACK68459.1| integrase family protein [Cyanothece sp. PCC 8801] Length = 362 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|158318108|ref|YP_001510616.1| integrase family protein [Frankia sp. EAN1pec] gi|158113513|gb|ABW15710.1| integrase family protein [Frankia sp. EAN1pec] Length = 358 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L G +L +IQ +LGHS TT Y +V+S + + + Sbjct: 293 TPHVLRHYCASELYRAGMNLFAIQELLGHSWTGTTARYVHVHSTHVEDAW 342 >gi|238925836|ref|YP_002939354.1| integrase [Eubacterium rectale ATCC 33656] gi|238877513|gb|ACR77220.1| integrase [Eubacterium rectale ATCC 33656] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|225627141|ref|ZP_03785179.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo] gi|225617976|gb|EEH15020.1| Tyrosine recombinase xerC [Brucella ceti str. Cudo] Length = 313 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 259 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 303 >gi|291539286|emb|CBL12397.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|166032931|ref|ZP_02235760.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC 27755] gi|166027288|gb|EDR46045.1| hypothetical protein DORFOR_02652 [Dorea formicigenerans ATCC 27755] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|121605183|ref|YP_982512.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120594152|gb|ABM37591.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 331 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS A+ L++ G DL ++ ILGHS TTQ Y ++ ++ E ++ Sbjct: 271 VNFHDLRHSCASILIALGVDLYTVSKILGHSNTQTTQRYAHLQVEQQREALNK 323 >gi|325851898|ref|ZP_08171031.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484675|gb|EGC87589.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 351 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410 Query: 61 TQ 62 Q Sbjct: 411 AQ 412 >gi|291551230|emb|CBL27492.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] gi|295098808|emb|CBK87897.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|291459452|ref|ZP_06598842.1| site-specific recombinase, phage integrase family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418051|gb|EFE91770.1| site-specific recombinase, phage integrase family [Oribacterium sp. oral taxon 078 str. F0262] Length = 348 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGH+ +STT IY +V ++ Sbjct: 270 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHADISTTLNIYADVTKDLKKSEFE 321 >gi|332884572|gb|EGK04830.1| hypothetical protein HMPREF9456_03300 [Dysgonomonas mossii DSM 22836] Length = 366 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 32/48 (66%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T+HT RH+FAT+LL+ G L ++ LGHS + TQ+Y + SK++ Sbjct: 319 KVTSHTARHTFATYLLNKGISLETVSKTLGHSNIKQTQLYARILSKKV 366 >gi|331697728|ref|YP_004333967.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|331698613|ref|YP_004334852.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|331699771|ref|YP_004336010.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326952417|gb|AEA26114.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326953302|gb|AEA26999.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326954460|gb|AEA28157.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 362 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y + Sbjct: 286 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAYRRA 338 >gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 393 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LL+ G + + ILGH + T+IY + K+ +E + Sbjct: 329 ITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLETVN 380 >gi|226329968|ref|ZP_03805486.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198] gi|225200763|gb|EEG83117.1| hypothetical protein PROPEN_03881 [Proteus penneri ATCC 35198] Length = 168 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FATH + NGG + ++Q ILGH+ L T Y + + + Sbjct: 108 HALRHTFATHFMMNGGSIITLQRILGHTNLQQTLTYAHFAPDFLQDAIQ 156 >gi|149916532|ref|ZP_01905048.1| Site-specific recombinase XerD-like protein [Roseobacter sp. AzwK-3b] gi|149809571|gb|EDM69428.1| Site-specific recombinase XerD-like protein [Roseobacter sp. AzwK-3b] Length = 316 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+ L++ G L +Q++LGHS + TQ Y ++ R+ Sbjct: 258 HDLRHTFASLLINKGVSLYEVQTLLGHSSVQMTQRYAHLAPDRL 301 >gi|28378636|ref|NP_785528.1| integrase, fragment [Lactobacillus plantarum WCFS1] gi|28271472|emb|CAD64377.1| integrase, fragment [Lactobacillus plantarum WCFS1] Length = 107 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 S H+LRH+ AT LL NG + IQ LGHSR+STT IY++V +K + D Sbjct: 43 FSFNFHSLRHTHATMLLENGAKYKEIQQRLGHSRISTTLDIYSHVTNKMKRDTVD 97 >gi|291535071|emb|CBL08183.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 359 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH FA+ L +G DL+ + +LGH L T+ Y++++ + + Sbjct: 290 HDLRHCFASLLRQSGADLQDVAELLGHKDLRMTKRYSHLSPAHLSAAARRF 340 >gi|237815093|ref|ZP_04594091.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A] gi|237789930|gb|EEP64140.1| Tyrosine recombinase xerC [Brucella abortus str. 2308 A] Length = 313 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 259 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 303 >gi|88856877|ref|ZP_01131529.1| phage-related integrase [marine actinobacterium PHSC20C1] gi|88813845|gb|EAR23715.1| phage-related integrase [marine actinobacterium PHSC20C1] Length = 333 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HTLRH+ A HLL +G DL +I LGHS +TTQ Y + + + Sbjct: 257 ISPHTLRHATAMHLLQSGTDLATIALWLGHSSPATTQQYLEADLAAKEAVLEH 309 >gi|167766612|ref|ZP_02438665.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1] gi|167711735|gb|EDS22314.1| hypothetical protein CLOSS21_01118 [Clostridium sp. SS2/1] gi|291558634|emb|CBL37434.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|162958004|ref|YP_001621436.1| Int2 [Serratia entomophila] gi|155382591|gb|ABU23786.1| Int2 [Serratia entomophila] Length = 236 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 27/43 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 S T HT RHSFA HLL N + +QS +GH +T+IYT V Sbjct: 166 SITPHTFRHSFAMHLLYNRVHPKILQSFMGHRDYKSTEIYTRV 208 >gi|126661403|ref|ZP_01732464.1| phage integrase [Cyanothece sp. CCY0110] gi|126617310|gb|EAZ88118.1| phage integrase [Cyanothece sp. CCY0110] Length = 401 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H+LRH+ AT L G L +Q +LGH+ TT +Y ++ + + Sbjct: 301 KLSPHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 348 >gi|331082739|ref|ZP_08331862.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400358|gb|EGG80000.1| hypothetical protein HMPREF0992_00786 [Lachnospiraceae bacterium 6_1_63FAA] Length = 368 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+LL G D +++Q + GH TT IY V +++ ++ + Sbjct: 302 FDVTPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSA 361 >gi|291523415|emb|CBK81708.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13] gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13] Length = 310 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++++RHSFAT L G + I +LGH + TTQIY S M ++ Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKA 297 >gi|302346799|ref|YP_003815097.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150507|gb|ADK96768.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 412 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 346 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 405 Query: 61 TQ 62 Q Sbjct: 406 AQ 407 >gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] Length = 285 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 28/40 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T+AH LRH+ ATH L NG D+ +Q LGHS ++TTQ Y Sbjct: 228 KTSAHWLRHAHATHSLENGCDISLLQQSLGHSDITTTQRY 267 >gi|307565509|ref|ZP_07627991.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345778|gb|EFN91133.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 37/64 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ +Q + Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADKLD 399 Query: 62 QKDK 65 + +K Sbjct: 400 KFNK 403 >gi|225026927|ref|ZP_03716119.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353] gi|226322383|ref|ZP_03797901.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758] gi|323487599|ref|ZP_08092889.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum WAL-14163] gi|224955738|gb|EEG36947.1| hypothetical protein EUBHAL_01183 [Eubacterium hallii DSM 3353] gi|225209241|gb|EEG91595.1| hypothetical protein COPCOM_00151 [Coprococcus comes ATCC 27758] gi|323399098|gb|EGA91506.1| hypothetical protein HMPREF9474_04640 [Clostridium symbiosum WAL-14163] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] Length = 403 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+LL G D +++Q + GH TT IY V +++ ++ + Sbjct: 337 FDVTPHLLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYARVKYNKPEQLFDVVNSA 396 >gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B] Length = 419 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RHSFA ++L G +++++ S++GHS + T+ Y +V ++ + + Sbjct: 353 TITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMTEKYLHVIDQQKQDAIN 405 >gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1] gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1] Length = 410 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGH +STT IYT+V + ++ Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDALGHKDVSTTLNIYTDVTKELRKSEFE 402 >gi|260545644|ref|ZP_05821385.1| phage integrase [Brucella abortus NCTC 8038] gi|260754402|ref|ZP_05866750.1| phage integrase [Brucella abortus bv. 6 str. 870] gi|260757621|ref|ZP_05869969.1| phage integrase [Brucella abortus bv. 4 str. 292] gi|260761447|ref|ZP_05873790.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|260883427|ref|ZP_05895041.1| phage integrase [Brucella abortus bv. 9 str. C68] gi|260097051|gb|EEW80926.1| phage integrase [Brucella abortus NCTC 8038] gi|260667939|gb|EEX54879.1| phage integrase [Brucella abortus bv. 4 str. 292] gi|260671879|gb|EEX58700.1| phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|260674510|gb|EEX61331.1| phage integrase [Brucella abortus bv. 6 str. 870] gi|260872955|gb|EEX80024.1| phage integrase [Brucella abortus bv. 9 str. C68] Length = 312 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 258 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 302 >gi|154484436|ref|ZP_02026884.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC 27560] gi|149734913|gb|EDM50830.1| hypothetical protein EUBVEN_02149 [Eubacterium ventriosum ATCC 27560] Length = 426 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H LRH+FAT L + +L++IQ I+GH+ + TT IY + + Sbjct: 366 TCHQLRHTFATRLCESTSNLKAIQDIMGHANIETTMDIYAEATVGTKQKAIEN 418 >gi|94310186|ref|YP_583396.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354038|gb|ABF08127.1| tyrosine-based site-specific recombinase , N-terminal SAM-like protein [Cupriavidus metallidurans CH34] Length = 336 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+ A HLL +G ++ I+ LGH L TT Y + + E P + Sbjct: 256 KVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVA 315 Query: 62 QKDKK 66 +K Sbjct: 316 GVPRK 320 >gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 393 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 33/51 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS A++++++G + + +LGHS+L TTQ Y +++ + ++ D Sbjct: 327 HDLRHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLAAVDAA 377 >gi|271965863|ref|YP_003340059.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] gi|270509038|gb|ACZ87316.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] Length = 375 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHP 58 S T H LRH+ ATHLL++ D+ +++ +LGHS L+T Y + +E+ + HP Sbjct: 311 SVTPHGLRHTTATHLLADAVDMDAVRRVLGHSDLATLGRY----RDELPGELEVAMRAHP 366 Query: 59 SIT 61 + Sbjct: 367 LLR 369 >gi|290769909|gb|ADD61679.1| putative protein [uncultured organism] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|265994586|ref|ZP_06107143.1| phage integrase [Brucella melitensis bv. 3 str. Ether] gi|262765699|gb|EEZ11488.1| phage integrase [Brucella melitensis bv. 3 str. Ether] Length = 313 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 259 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 303 >gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B] gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++++RHSFAT L G + I +LGH + TTQIY S M ++ Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKA 297 >gi|167621618|ref|YP_001672126.1| integrase family protein [Caulobacter sp. K31] gi|167645971|ref|YP_001683634.1| integrase family protein [Caulobacter sp. K31] gi|167646190|ref|YP_001683853.1| integrase family protein [Caulobacter sp. K31] gi|167348401|gb|ABZ71136.1| integrase family protein [Caulobacter sp. K31] gi|167348620|gb|ABZ71355.1| integrase family protein [Caulobacter sp. K31] gi|167351741|gb|ABZ74467.1| integrase family protein [Caulobacter sp. K31] Length = 330 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHS A LL +G D I LGH + TTQIY + + RM E Sbjct: 254 VTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADM-RMKE 301 >gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19] gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3] gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19] gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3] Length = 310 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++++RHSFAT L G + I +LGH + TTQIY S M ++ Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKA 297 >gi|295108684|emb|CBL22637.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 419 >gi|282881006|ref|ZP_06289696.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281305082|gb|EFA97152.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] Length = 407 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQ 393 >gi|282877432|ref|ZP_06286255.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300484|gb|EFA92830.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 407 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT LS G + S+ +LGH+ + TTQ+Y + +K++ +Q Sbjct: 340 NLTFHLARHTFATMSLSKGVPMESVSKMLGHTNIKTTQLYARITNKKVEHDMEQ 393 >gi|237745531|ref|ZP_04576011.1| integrase [Oxalobacter formigenes HOxBLS] gi|229376882|gb|EEO26973.1| integrase [Oxalobacter formigenes HOxBLS] Length = 321 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS AT L+++ DL ++ +LGH + TTQ Y++V K + + + Sbjct: 270 HDLRHSTATSLINSEKDLYLVKDLLGHKDIRTTQRYSHVLKKTLQDFVRK 319 >gi|331646067|ref|ZP_08347170.1| integrase for prophage [Escherichia coli M605] gi|331044819|gb|EGI16946.1| integrase for prophage [Escherichia coli M605] Length = 397 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H LRH+FA H + +GG++ ++Q ILGH + T Y ++ Sbjct: 333 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYAHL 371 >gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 377 Score = 68.8 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLS-TTQIYTNVNSKRMMEIYD 54 HT+RH+FAT L G ++I +LGH+ +S T YT+V + D Sbjct: 319 HTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAID 368 >gi|256841348|ref|ZP_05546855.1| integrase [Parabacteroides sp. D13] gi|256737191|gb|EEU50518.1| integrase [Parabacteroides sp. D13] Length = 407 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHS+A L G + S+ ILGH+ ++TTQIY V S ++ I Sbjct: 339 VSFHVSRHSWAVLALEYGMPIESVSKILGHTNITTTQIYAKVTSTKLDHDIAVFESRIK 397 >gi|297521334|ref|ZP_06939720.1| integrase [Escherichia coli OP50] Length = 111 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRHSFATH + NGG + ++Q ILGH+R+ T +Y + + + + Sbjct: 43 HALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAI 90 >gi|293371770|ref|ZP_06618180.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|291516009|emb|CBK65219.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] gi|292633222|gb|EFF51793.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 411 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHVARHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|288800952|ref|ZP_06406409.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332413|gb|EFC70894.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 417 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 351 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410 Query: 61 TQ 62 Q Sbjct: 411 AQ 412 >gi|253564012|ref|ZP_04841469.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251947788|gb|EES88070.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301161685|emb|CBW21225.1| putative integrase/transposase [Bacteroides fragilis 638R] Length = 393 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + HT RH+ AT L+ +G ++ ++Q +LGH + TTQ+YTN+ ++ +++ Sbjct: 331 ISFHTARHTNATLLIYSGVNITTVQKLLGHKSVKTTQVYTNIMDITIVRDLEKS 384 >gi|304404690|ref|ZP_07386351.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346497|gb|EFM12330.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 359 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHSFAT + L N D+ Q LGH+ TTQIY ++ + M E D T Sbjct: 306 SVHKLRHSFATDYYLRN--DIYKTQEQLGHASPETTQIYAHLTDRTMAEAIDHT 357 >gi|311234339|gb|ADP87193.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 359 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FA+ L+ G L ++ ++GHS + T+ Y + E +Q Sbjct: 301 KVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 354 >gi|154492804|ref|ZP_02032430.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC 43184] gi|154087109|gb|EDN86154.1| hypothetical protein PARMER_02443 [Parabacteroides merdae ATCC 43184] Length = 310 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF T L G + SI ++GHS +++TQIY + +++ ++ Sbjct: 255 PLTWHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDMER 308 >gi|149923898|ref|ZP_01912286.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815241|gb|EDM74788.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 392 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRH+F +HL G R IQ + GH+ L TTQ Y +++ Sbjct: 308 PHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 349 >gi|134281339|ref|ZP_01768047.1| prophage DLP12 integrase [Burkholderia pseudomallei 305] gi|134247006|gb|EBA47092.1| prophage DLP12 integrase [Burkholderia pseudomallei 305] Length = 85 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ E + P Sbjct: 32 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGREAVQKLLP 84 >gi|332826665|gb|EGJ99491.1| hypothetical protein HMPREF9455_04143 [Dysgonomonas gadei ATCC BAA-286] Length = 406 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH++AT + LS G + ++ +LGHS+++TTQIY + + ++ E I Sbjct: 341 TWHCGRHTYATEITLSQGVPIETVSRMLGHSQIATTQIYAKITNDKIDEDMKALEKRIAG 400 Query: 63 KDK 65 K K Sbjct: 401 KFK 403 >gi|304382841|ref|ZP_07365324.1| integrase [Prevotella marshii DSM 16973] gi|304336026|gb|EFM02273.1| integrase [Prevotella marshii DSM 16973] Length = 392 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RHSF T L G + SI ++GH+ +++TQIY + ++ D+ Sbjct: 332 PLSFHVGRHSFGTLTLEAGVPIESIAKMMGHASIASTQIYAQITDSKISRDMDR 385 >gi|86130576|ref|ZP_01049176.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85819251|gb|EAQ40410.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 417 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT + LSNG + ++ +LGHS+++TTQIY V ++ D Sbjct: 346 NLTFHMARHTFATTITLSNGVPIETVSKLLGHSKIATTQIYARVLEHKVSNDMD 399 >gi|328885775|emb|CCA59014.1| site-specific recombinase, phage integrase family [Streptomyces venezuelae ATCC 10712] Length = 283 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H++RH+ A+ L+ NG L +Q +LGH TTQ Y ++ + Sbjct: 218 PHSMRHTCASWLVQNGVSLYEVQHLLGHESYQTTQRYAHLAPDAHQAVL 266 >gi|297627411|ref|YP_003689174.1| Phage integrase:Phage integrase, N-terminal SAM-like [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923176|emb|CBL57769.1| Phage integrase:Phage integrase, N-terminal SAM-like [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 313 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 29/45 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FAT +L+ G L+ +Q +L H+ L TT +Y V+ R+ Sbjct: 251 PHRLRHTFATGMLATGATLQEVQGLLRHAHLRTTALYAKVDKNRL 295 >gi|265755606|ref|ZP_06090227.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234212|gb|EEZ19805.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 386 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51 + + H RH+FAT L+ G L ++Q +LGH + +TQ+Y + ++ RM E Sbjct: 319 VRVSPHVGRHTFATLALNKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 376 >gi|253682391|ref|ZP_04863188.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] gi|253562103|gb|EES91555.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] Length = 236 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 ++ H+LRH+ AT +L G +++ IQ LGHS+LSTT Y++V +K Sbjct: 173 INFCFHSLRHTHATMMLEAGANIKDIQHRLGHSKLSTTMDTYSHVTNK 220 >gi|228997868|ref|ZP_04157471.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17] gi|229005405|ref|ZP_04163118.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4] gi|228755767|gb|EEM05099.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock1-4] gi|228761866|gb|EEM10809.1| Transposition regulatory protein TnpB [Bacillus mycoides Rock3-17] Length = 182 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ ++Q +L H+ T Y + + + ++ Sbjct: 95 PHQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 144 >gi|304382759|ref|ZP_07365243.1| integrase [Prevotella marshii DSM 16973] gi|304336078|gb|EFM02324.1| integrase [Prevotella marshii DSM 16973] Length = 406 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQK 393 >gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 327 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H+LRH+FA + L +GG + ++ ILGH +++T Y + S+ + E Y+ Sbjct: 266 VSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVRMTSEEVKEQYE 317 >gi|149920205|ref|ZP_01908677.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818971|gb|EDM78410.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 392 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRH+F +HL G R IQ + GH+ L TTQ Y +++ Sbjct: 308 PHTLRHTFCSHLAMRGAAARVIQQLAGHASLVTTQRYMHLSP 349 >gi|260170443|ref|ZP_05756855.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|315918797|ref|ZP_07915037.1| integrase [Bacteroides sp. D2] gi|313692672|gb|EFS29507.1| integrase [Bacteroides sp. D2] Length = 395 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H RH+F T LLS G + SI ++GH+ +STTQ+Y V ++ E D+ Sbjct: 334 NMSYHQSRHTFGTLLLSEGIPIESISKMMGHTNISTTQVYAKVTDMKISEDMDK 387 >gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC 29799] gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC 29799] Length = 503 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG LR IQ LGHS + TT IYT+++ Sbjct: 433 KIRFHDLRHSCASLLYANGVSLRDIQEWLGHSDIGTTSNIYTHLD 477 >gi|148244009|ref|YP_001220247.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146400572|gb|ABQ29105.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 330 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHS A LL +G D I LGH + TTQIY + + R+ E Sbjct: 254 VTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADM-RLKE 301 >gi|116621640|ref|YP_823796.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224802|gb|ABJ83511.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 336 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHS A HL++ G D+ I+S LGH++L TT Y N + + +Q P + Sbjct: 258 VTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKLR 316 >gi|313158622|gb|EFR58015.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 411 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEVLSHK 399 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 400 LEKMEKE 406 >gi|256060768|ref|ZP_05450930.1| Phage integrase [Brucella neotomae 5K33] gi|261324757|ref|ZP_05963954.1| phage integrase [Brucella neotomae 5K33] gi|261300737|gb|EEY04234.1| phage integrase [Brucella neotomae 5K33] Length = 308 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|225852160|ref|YP_002732393.1| tyrosine recombinase XerC [Brucella melitensis ATCC 23457] gi|256044336|ref|ZP_05447240.1| Tyrosine recombinase xerC [Brucella melitensis bv. 1 str. Rev.1] gi|256264329|ref|ZP_05466861.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|265990748|ref|ZP_06103305.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1] gi|225640525|gb|ACO00439.1| Tyrosine recombinase xerC [Brucella melitensis ATCC 23457] gi|263001532|gb|EEZ14107.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1] gi|263094603|gb|EEZ18401.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|326408660|gb|ADZ65725.1| tyrosine recombinase XerC [Brucella melitensis M28] gi|326538383|gb|ADZ86598.1| tyrosine recombinase xerC [Brucella melitensis M5-90] Length = 308 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|209516756|ref|ZP_03265608.1| integrase family protein [Burkholderia sp. H160] gi|209502873|gb|EEA02877.1| integrase family protein [Burkholderia sp. H160] Length = 416 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+ AT L++ G L++I LGH L TT+IY V+ R+ E+ Sbjct: 360 PHALRHACATRLINQGLPLKAIADQLGHRSLETTRIYAKVDLPRLREV 407 >gi|126661017|ref|ZP_01732103.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] gi|126617716|gb|EAZ88499.1| Tn554-related, transposase A [Cyanothece sp. CCY0110] Length = 370 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + H RH+FAT +L G + +Q +LGH + TT IY++V + Sbjct: 310 IKAHPHLFRHTFATRMLQAGYLDQYVQQLLGHKSIGTTKDIYSHVLDE 357 >gi|29348544|ref|NP_812047.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29340449|gb|AAO78241.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 410 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+ RHSFA+ + L G + +I +LGH + TQ Y V K++ E D+ + T+ Sbjct: 345 SYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKFI-AATE 403 Query: 63 KD 64 KD Sbjct: 404 KD 405 >gi|15829002|ref|NP_326362.1| integrase/recombinase [Mycoplasma pulmonis UAB CTIP] gi|14089946|emb|CAC13704.1| INTEGRASE/RECOMBINASE [Mycoplasma pulmonis] Length = 274 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+LR SFATH++ +G D ++I LGHS ++TT Y N + +IY + Sbjct: 219 SPHSLRRSFATHMMQSGADPKTIMLQLGHSSINTTFQYVNSSESYNRKIYLKH 271 >gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 380 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 S + H LRH+ AT +L G + +Q LGHS ++TT Y++V E D+ Sbjct: 319 SVSLHDLRHTHATLMLQAGVHPKVVQERLGHSTITTTLDTYSHVIPSMQKESVDKY 374 >gi|291513831|emb|CBK63041.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 411 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEVLSHK 399 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 400 LEKMEKE 406 >gi|167752976|ref|ZP_02425103.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216] gi|167659290|gb|EDS03420.1| hypothetical protein ALIPUT_01239 [Alistipes putredinis DSM 17216] Length = 415 Score = 68.8 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEVLSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|332884811|gb|EGK05066.1| hypothetical protein HMPREF9456_02979 [Dysgonomonas mossii DSM 22836] Length = 121 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS A HLL G + I+ LGH + TT+IY ++ + ++ +++ P Sbjct: 41 KITPHILRHSKAMHLLQAGYTMVVIRDWLGHVSVQTTEIYATLDIEAKRKLLEESFP 97 >gi|212691118|ref|ZP_03299246.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] gi|212666350|gb|EEB26922.1| hypothetical protein BACDOR_00608 [Bacteroides dorei DSM 17855] Length = 409 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I +LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEAGVPIETISKMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|17987590|ref|NP_540224.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260563689|ref|ZP_05834175.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|17983297|gb|AAL52488.1| integrase [Brucella melitensis bv. 1 str. 16M] gi|260153705|gb|EEW88797.1| phage integrase [Brucella melitensis bv. 1 str. 16M] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|332884383|gb|EGK04647.1| hypothetical protein HMPREF9456_03400 [Dysgonomonas mossii DSM 22836] Length = 338 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H +RHS A L+ G +L I+ +LGH + T+IY ++S R E ++ I + Sbjct: 259 SPHKIRHSTAMSLVEQGTELIIIRDLLGHRSIQATEIYAKLSSNRKREAIEKASSHIVPE 318 Query: 64 DK 65 ++ Sbjct: 319 ER 320 >gi|306842096|ref|ZP_07474767.1| Phage integrase [Brucella sp. BO2] gi|306287792|gb|EFM59218.1| Phage integrase [Brucella sp. BO2] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|304382578|ref|ZP_07365072.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|304336203|gb|EFM02445.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] Length = 387 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V ++ + Sbjct: 303 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 355 >gi|256113171|ref|ZP_05454048.1| Tyrosine recombinase xerC [Brucella melitensis bv. 3 str. Ether] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|319641880|ref|ZP_07996555.1| integrase [Bacteroides sp. 3_1_40A] gi|317386499|gb|EFV67403.1| integrase [Bacteroides sp. 3_1_40A] Length = 412 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 346 KLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPFI 405 Query: 61 TQ 62 TQ Sbjct: 406 TQ 407 >gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] Length = 320 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+ L++ G L +Q +LGHS TT Y ++ + Sbjct: 256 HDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASL 299 >gi|260909619|ref|ZP_05916318.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260636262|gb|EEX54253.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 417 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 + H RH+F T LS G + SI ++GH+ +S+TQ+Y V ++ E D Q Sbjct: 348 SYHIGRHTFGTMSLSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDMDML--IAKQS 405 Query: 64 DKK 66 +K+ Sbjct: 406 EKE 408 >gi|23501523|ref|NP_697650.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|62289597|ref|YP_221390.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82699526|ref|YP_414100.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|161618609|ref|YP_001592496.1| tyrosine recombinase xerC [Brucella canis ATCC 23365] gi|163842909|ref|YP_001627313.1| tyrosine recombinase xerC [Brucella suis ATCC 23445] gi|189023854|ref|YP_001934622.1| Phage integrase [Brucella abortus S19] gi|254688916|ref|ZP_05152170.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|254693398|ref|ZP_05155226.1| Phage integrase [Brucella abortus bv. 3 str. Tulya] gi|254697049|ref|ZP_05158877.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254703973|ref|ZP_05165801.1| Phage integrase [Brucella suis bv. 3 str. 686] gi|254707651|ref|ZP_05169479.1| Phage integrase [Brucella pinnipedialis M163/99/10] gi|254709767|ref|ZP_05171578.1| Phage integrase [Brucella pinnipedialis B2/94] gi|254729947|ref|ZP_05188525.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256031257|ref|ZP_05444871.1| Phage integrase [Brucella pinnipedialis M292/94/1] gi|256257164|ref|ZP_05462700.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|256369075|ref|YP_003106583.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260168393|ref|ZP_05755204.1| site-specific recombinase, phage integrase family protein [Brucella sp. F5/99] gi|260566779|ref|ZP_05837249.1| phage integrase [Brucella suis bv. 4 str. 40] gi|261213648|ref|ZP_05927929.1| phage integrase [Brucella abortus bv. 3 str. Tulya] gi|261315145|ref|ZP_05954342.1| phage integrase [Brucella pinnipedialis M163/99/10] gi|261317299|ref|ZP_05956496.1| phage integrase [Brucella pinnipedialis B2/94] gi|261754625|ref|ZP_05998334.1| phage integrase [Brucella suis bv. 3 str. 686] gi|261757854|ref|ZP_06001563.1| phage integrase [Brucella sp. F5/99] gi|265988337|ref|ZP_06100894.1| phage integrase [Brucella pinnipedialis M292/94/1] gi|297248011|ref|ZP_06931729.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196] gi|23347432|gb|AAN29565.1| site-specific recombinase, phage integrase family [Brucella suis 1330] gi|62195729|gb|AAX74029.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82615627|emb|CAJ10614.1| Phage integrase:Phage integrase, N-terminal SAM-like [Brucella melitensis biovar Abortus 2308] gi|161335420|gb|ABX61725.1| Tyrosine recombinase xerC [Brucella canis ATCC 23365] gi|163673632|gb|ABY37743.1| Tyrosine recombinase xerC [Brucella suis ATCC 23445] gi|189019426|gb|ACD72148.1| Phage integrase [Brucella abortus S19] gi|255999235|gb|ACU47634.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260156297|gb|EEW91377.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260915255|gb|EEX82116.1| phage integrase [Brucella abortus bv. 3 str. Tulya] gi|261296522|gb|EEY00019.1| phage integrase [Brucella pinnipedialis B2/94] gi|261304171|gb|EEY07668.1| phage integrase [Brucella pinnipedialis M163/99/10] gi|261737838|gb|EEY25834.1| phage integrase [Brucella sp. F5/99] gi|261744378|gb|EEY32304.1| phage integrase [Brucella suis bv. 3 str. 686] gi|264660534|gb|EEZ30795.1| phage integrase [Brucella pinnipedialis M292/94/1] gi|297175180|gb|EFH34527.1| tyrosine recombinase xerC [Brucella abortus bv. 5 str. B3196] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|148559347|ref|YP_001258625.1| phage integrase family site specific recombinase [Brucella ovis ATCC 25840] gi|148370604|gb|ABQ60583.1| site-specific recombinase, phage integrase family [Brucella ovis ATCC 25840] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|149921212|ref|ZP_01909669.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817983|gb|EDM77443.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 401 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 26/38 (68%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH+FAT L++ G L I+ +LGH+ L TTQ Y + Sbjct: 316 HKLRHTFATRLVAAGVPLLVIKELLGHADLRTTQRYLH 353 >gi|170732631|ref|YP_001764578.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169815873|gb|ACA90456.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 429 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H +RH FA+ L+ G DL +++ +LGHS ++ T Y ++ + + Sbjct: 366 HDMRHHFASRLVMAGVDLNTVRELLGHSDMTMTLRYAHLAPEHKAAAVAK 415 >gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] Length = 331 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H +RH+ AT L G + +Q ILGH ++TT IY V+ + + + Sbjct: 278 PHLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIYAEVSRANVKNNHRKC 329 >gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4] gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4] Length = 327 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LR + AT L G + +Q +LGH + TT IY + + +++ Sbjct: 271 NVHPHRLRRTAATTALKRGMPIEQVQKMLGHESIETTTIYAQSTNDEVKLAHEKY 325 >gi|294852004|ref|ZP_06792677.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026] gi|294820593|gb|EFG37592.1| tyrosine recombinase xerC [Brucella sp. NVSL 07-0026] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|325856124|ref|ZP_08171976.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|327313880|ref|YP_004329317.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|325483681|gb|EGC86647.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|326945479|gb|AEA21364.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 406 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQK 393 >gi|291530481|emb|CBK96066.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 431 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKQE 419 >gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 398 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH++AT LL + +Q +LGH+ +STT IY++V + + Sbjct: 328 LDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMPEIKKAAAMK 383 >gi|29826699|ref|NP_821333.1| integrase/recombinase [Streptomyces avermitilis MA-4680] gi|29603795|dbj|BAC67868.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 380 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKD 64 H LRHS+ TH + +G D IQ +GH STT +YT V+ + + S Q+D Sbjct: 309 PHCLRHSYVTHSIEDGADPVFIQQQVGHEYASTTALYTGVSGDFANTMMRKAIDSALQRD 368 Query: 65 KKN 67 ++ Sbjct: 369 LQD 371 >gi|270339835|ref|ZP_06006154.2| integrase [Prevotella bergensis DSM 17361] gi|270333599|gb|EFA44385.1| integrase [Prevotella bergensis DSM 17361] Length = 470 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 404 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 463 Query: 61 TQ 62 Q Sbjct: 464 AQ 465 >gi|326774393|ref|ZP_08233658.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] gi|326654726|gb|EGE39572.1| integrase family protein [Streptomyces cf. griseus XylebKG-1] Length = 387 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H RH++AT LL + + +LGH+ TT +IY++++ + + Sbjct: 324 SPHVCRHTYATRLLRAEVPIEVVAELLGHASPQTTAEIYSHLDVEDHRRVLLSA 377 >gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] Length = 273 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 ++H LRHS A+H + G +LR +Q LGHS+L TT+ Y ++N Sbjct: 219 KASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDE 265 >gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6] gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF] gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6] gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H RH+ A+ L G D + +Q +GH+ + TT YT++ + + E + Sbjct: 325 HGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQK 375 >gi|332876837|ref|ZP_08444592.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685202|gb|EGJ58044.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 372 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF + + G D+ IQ+ LGH ++TTQIY+ + +++M ++ D+ IT Sbjct: 311 KITFHCTRHSFGSLHVEMGTDMAVIQACLGHKNITTTQIYSKMAAQQMCDVVDK----IT 366 Query: 62 QKDKK 66 K K+ Sbjct: 367 LKRKE 371 >gi|307566491|ref|ZP_07628922.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344802|gb|EFN90208.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 456 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 390 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 449 Query: 61 TQ 62 Q Sbjct: 450 AQ 451 >gi|15966853|ref|NP_387206.1| putative integrase/recombinase protein [Sinorhizobium meliloti 1021] gi|15076125|emb|CAC47679.1| Putative integrase/recombinase [Sinorhizobium meliloti 1021] Length = 239 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H RHS A LL +G DL +IQ+ LGH++++TT Y + + M ++ Sbjct: 162 PISPHIFRHSLAMKLLQSGVDLLTIQAWLGHAQVATTHRYAAADVEMMRNGLEKA 216 >gi|295397961|ref|ZP_06808017.1| possible integrase [Aerococcus viridans ATCC 11563] gi|294973719|gb|EFG49490.1| possible integrase [Aerococcus viridans ATCC 11563] Length = 356 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H+LRH+ AT L NGG+LR Q +L HS + TT+IY ++ + Sbjct: 277 KITPHSLRHTAATLSLINGGNLRETQKLLRHSSVRTTEIYAQDLNEDL 324 >gi|229078262|ref|ZP_04210827.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2] gi|228705062|gb|EEL57483.1| Transposition regulatory protein TnpA [Bacillus cereus Rock4-2] Length = 374 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 ++ H RH+ AT D++ +Q LGH+ + TT +Y + + + + + + + Sbjct: 305 LAVHPHLFRHTHATLYYQETKDIKQVQERLGHTNIQTTMNLYLHPSDEEIRKDWQKA 361 >gi|126669151|ref|ZP_01740077.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626384|gb|EAZ97055.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 166 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS A LL +G D+ I+ LGH+ ++TT Y N + E + Sbjct: 85 KITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEAF 139 >gi|153811377|ref|ZP_01964045.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174] gi|149832504|gb|EDM87588.1| hypothetical protein RUMOBE_01769 [Ruminococcus obeum ATCC 29174] Length = 425 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 M H RH+F T + +G D +++ I GHS T YT++ + + + Y+ Sbjct: 362 MDVHPHIFRHTFVTRCIQSGMDAATVKKIAGHSDEKMTNYYTHIEEEHIDDEYE 415 >gi|260592906|ref|ZP_05858364.1| integrase [Prevotella veroralis F0319] gi|260535106|gb|EEX17723.1| integrase [Prevotella veroralis F0319] Length = 406 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQK 393 >gi|323530187|ref|YP_004232339.1| hypothetical protein BC1001_5915 [Burkholderia sp. CCGE1001] gi|323387189|gb|ADX59279.1| Protein of unknown function DUF3701 [Burkholderia sp. CCGE1001] Length = 570 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+ ATH L +G +L +++ L H+ +STT +Y + + + + Sbjct: 509 ASPHWMRHTHATHALEHGAELTTVRDNLRHASISTTSLYLHADDAKRAKQLGSIFARANT 568 Query: 63 KD 64 K Sbjct: 569 KP 570 >gi|317477400|ref|ZP_07936631.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906494|gb|EFV28217.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 411 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 399 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 400 LEKMEKE 406 >gi|283795776|ref|ZP_06344929.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291076407|gb|EFE13771.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] Length = 344 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 + H LRH+F T L + D++ IQ ++GH+ STT IYT++ + M E Sbjct: 284 SVHNLRHTFCTRLCESTNDVKFIQQVMGHADFSTTMDIYTHITQENMQE 332 >gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 382 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H RH+ A+ L G D + +Q +GH+ + TT YT++ + + E + Sbjct: 325 HGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQK 375 >gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM 13479] gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM 13479] Length = 424 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN-----VNSKRMMEIYDQ 55 T H RH++A+ L G D++ Q +LGH + TT YT+ V ++ + Y+ Sbjct: 351 ITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTHFGFFDVEPDKLEDYYNA 409 >gi|126668746|ref|ZP_01739695.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126669114|ref|ZP_01740043.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626410|gb|EAZ97078.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126626783|gb|EAZ97431.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 338 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS A LL +G D+ I+ LGH+ ++TT Y N + E + Sbjct: 257 KITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEAF 311 >gi|325287290|ref|YP_004263080.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324322744|gb|ADY30209.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 423 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT + LSNG + ++ +LGHS+++TTQIY V ++ + Sbjct: 347 NLTFHMARHTFATTVTLSNGVPIETVSKLLGHSKIATTQIYARVLENKVSADMNA 401 >gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein [Streptococcus suis GZ1] Length = 432 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H+LRH+F T + G +++ IQ LGH +STT IYT+V + ++ Sbjct: 366 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDVTKELRKSEFE 417 >gi|317479188|ref|ZP_07938324.1| phage integrase [Bacteroides sp. 4_1_36] gi|316904632|gb|EFV26450.1| phage integrase [Bacteroides sp. 4_1_36] Length = 409 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH+F + + L G + +I +LGH+ L+TTQ+Y V+ K++ E D+ Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVSPKKLFEDMDKF 398 >gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 260 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+FAT LL+ DLR +Q ++ H + TT +YT V + +E Sbjct: 203 HQLRHTFATELLAADVDLRIVQLLMRHESIQTTALYTRVARAQQLE 248 >gi|13488301|ref|NP_085852.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028101|dbj|BAB54693.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 336 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + HT RHS A HLL +G D+ I LGH +TT Y + + P T Sbjct: 259 TISPHTFRHSTAMHLLQSGVDISVIALWLGHESPTTTHNYLQADLSMKERALARLQPLQT 318 Query: 62 QKDK 65 + + Sbjct: 319 GRTR 322 >gi|317503724|ref|ZP_07961739.1| integrase [Prevotella salivae DSM 15606] gi|315665149|gb|EFV04801.1| integrase [Prevotella salivae DSM 15606] Length = 362 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH+F T LS G + SI ++GH+ +++TQIY V +M E D+ Sbjct: 292 HMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKMSEDMDR 341 >gi|189467021|ref|ZP_03015806.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM 17393] gi|189435285|gb|EDV04270.1| hypothetical protein BACINT_03403 [Bacteroides intestinalis DSM 17393] Length = 410 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH++AT + LSN + ++ +LGH + TTQIY + ++++ ++ Sbjct: 340 NVTWHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394 >gi|311747169|ref|ZP_07720954.1| mobilizable transposon, int protein [Algoriphagus sp. PR1] gi|126578878|gb|EAZ83042.1| mobilizable transposon, int protein [Algoriphagus sp. PR1] Length = 387 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H RH++AT L + ++Q +LGH + TT +Y ++ + E Sbjct: 327 KITFHCFRHTYATLLAYGNTNPGTVQKMLGHKNIKTTMLYFHIVDQLKREA 377 >gi|300710820|ref|YP_003736634.1| integrase/recombinase [Halalkalicoccus jeotgali B3] gi|299124503|gb|ADJ14842.1| integrase/recombinase [Halalkalicoccus jeotgali B3] Length = 310 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 M H+ RH A H L +G ++R++Q LGH+ L T Y + + E Y + Sbjct: 254 MRIRPHSFRHGHAVHALKSGVNVRAVQEQLGHASLERTMQYMRLVEDDVAEAYKKF 309 >gi|239831475|ref|ZP_04679804.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301] gi|239823742|gb|EEQ95310.1| Tyrosine recombinase xerC [Ochrobactrum intermedium LMG 3301] Length = 308 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 25/47 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 252 VVPHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|167838354|ref|ZP_02465213.1| putative bacteriophage integrase [Burkholderia thailandensis MSMB43] Length = 284 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ + P Sbjct: 231 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDHGRVAVQKLSP 283 >gi|154492102|ref|ZP_02031728.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC 43184] gi|154087327|gb|EDN86372.1| hypothetical protein PARMER_01733 [Parabacteroides merdae ATCC 43184] Length = 415 Score = 68.4 bits (167), Expect = 3e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|251796688|ref|YP_003011419.1| site-specific tyrosine recombinase XerS [Paenibacillus sp. JDR-2] gi|247544314|gb|ACT01333.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 348 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSFAT + L N D+ Q LGH+ TTQIY ++ K M E D+ Sbjct: 289 SVHKLRHSFATDYYLRN--DIYMTQEQLGHASPETTQIYAHLTDKTMAEAIDR 339 >gi|167752533|ref|ZP_02424660.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216] gi|167762652|ref|ZP_02434779.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC 43183] gi|167659602|gb|EDS03732.1| hypothetical protein ALIPUT_00784 [Alistipes putredinis DSM 17216] gi|167699758|gb|EDS16337.1| hypothetical protein BACSTE_01009 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH+F + + L G + +I +LGH+ L+TTQ+Y V K++ E D+ Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDKF 398 >gi|126667752|ref|ZP_01738720.1| integrase/recombinase [Marinobacter sp. ELB17] gi|126627855|gb|EAZ98484.1| integrase/recombinase [Marinobacter sp. ELB17] Length = 163 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS A LL +G D+ I+ LGH+ ++TT Y N + E + Sbjct: 82 KITPHVLRHSCAVALLQSGVDVTVIRDYLGHASIATTSRYLTTNLQMKREALEAF 136 >gi|333031241|ref|ZP_08459302.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|332741838|gb|EGJ72320.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 406 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT + L+ G + ++ +LGH+ + TTQIY + ++++ + Sbjct: 339 NLTFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKISKDMR 392 >gi|167758571|ref|ZP_02430698.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704] gi|325662801|ref|ZP_08151370.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium 4_1_37FAA] gi|167663767|gb|EDS07897.1| hypothetical protein CLOSCI_00911 [Clostridium scindens ATCC 35704] gi|325470853|gb|EGC74082.1| hypothetical protein HMPREF0490_02110 [Lachnospiraceae bacterium 4_1_37FAA] Length = 411 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + + H LRH+F T L N +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 349 NFSCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFEN 403 >gi|150008853|ref|YP_001303596.1| transposase [Parabacteroides distasonis ATCC 8503] gi|149937277|gb|ABR43974.1| transposase [Parabacteroides distasonis ATCC 8503] Length = 415 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|148655018|ref|YP_001275223.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|148567128|gb|ABQ89273.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 337 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 + T HT RH AT LL+ G L + +ILGH+ T Q Y +R+ E++DQ P Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDERLQELHDQFAP 332 >gi|293397378|ref|ZP_06641633.1| resolvase [Serratia odorifera DSM 4582] gi|291420113|gb|EFE93387.1| resolvase [Serratia odorifera DSM 4582] Length = 270 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + T H RHS+A H+L G L+ +Q ++GH + +T++YT V Sbjct: 190 VPVTPHVFRHSYAMHMLYQGTPLKVLQGLMGHEKGESTEVYTRV 233 >gi|254498096|ref|ZP_05110853.1| Tn554, transposase A [Legionella drancourtii LLAP12] gi|254352662|gb|EET11440.1| Tn554, transposase A [Legionella drancourtii LLAP12] Length = 358 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+ A+ L+ G D+ +Q LGH+ + TT YT++++K+M + + I++K Sbjct: 299 PHMLRHTHASSLVRAGWDMALVQKRLGHTSIQTTVNTYTHIDTKQMKDAFKSY---ISKK 355 Query: 64 DK 65 + Sbjct: 356 EN 357 >gi|253570202|ref|ZP_04847611.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840583|gb|EES68665.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 409 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I S+LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|167762500|ref|ZP_02434627.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC 43183] gi|167699606|gb|EDS16185.1| hypothetical protein BACSTE_00855 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 68.4 bits (167), Expect = 4e-10, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RHSFA+ + L G + +I S+LGHS + TTQ+Y V K++ E D+ Sbjct: 347 HVGRHSFASLVTLEAGVPIETISSMLGHSNIQTTQVYARVTPKKLFEDMDR 397 >gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502] gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679] gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502] gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679] Length = 382 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H RH+ A+ L G D + +Q +GH+ + TT YT++ + + E + Sbjct: 325 HGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTYTHITNSKKEETTQK 375 >gi|154491478|ref|ZP_02031104.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC 43184] gi|154088467|gb|EDN87512.1| hypothetical protein PARMER_01087 [Parabacteroides merdae ATCC 43184] Length = 415 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|150009849|ref|YP_001304592.1| transposase [Parabacteroides distasonis ATCC 8503] gi|149938273|gb|ABR44970.1| transposase [Parabacteroides distasonis ATCC 8503] Length = 415 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|301310582|ref|ZP_07216521.1| integrase [Bacteroides sp. 20_3] gi|300832156|gb|EFK62787.1| integrase [Bacteroides sp. 20_3] Length = 415 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|290243059|ref|YP_003494729.1| integrase family protein [Thioalkalivibrio sp. K90mix] gi|288945564|gb|ADC73262.1| integrase family protein [Thioalkalivibrio sp. K90mix] Length = 420 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 +AH LRH+ AT +L +G D+R ++ HS + TTQ YT R+M+ DQ Sbjct: 360 ASAHALRHTAATDILESGVDMRVAADLMRHSDIRTTQGYTTPELSRLMDALDQ 412 >gi|29346548|ref|NP_810051.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29338444|gb|AAO76245.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 411 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 340 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 399 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 400 LEKMEKE 406 >gi|254884584|ref|ZP_05257294.1| transposase [Bacteroides sp. 4_3_47FAA] gi|254837377|gb|EET17686.1| transposase [Bacteroides sp. 4_3_47FAA] Length = 415 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|254718782|ref|ZP_05180593.1| Phage integrase [Brucella sp. 83/13] gi|265983761|ref|ZP_06096496.1| phage integrase [Brucella sp. 83/13] gi|306837500|ref|ZP_07470375.1| Phage integrase [Brucella sp. NF 2653] gi|264662353|gb|EEZ32614.1| phage integrase [Brucella sp. 83/13] gi|306407392|gb|EFM63596.1| Phage integrase [Brucella sp. NF 2653] Length = 308 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|212694523|ref|ZP_03302651.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855] gi|212663024|gb|EEB23598.1| hypothetical protein BACDOR_04051 [Bacteroides dorei DSM 17855] Length = 400 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 329 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 388 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 389 LEKMEKE 395 >gi|293371862|ref|ZP_06618267.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292633168|gb|EFF51744.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 385 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+ RHSFA+ + L G + +I +LGH + TQ Y V K++ E D+ + T+ Sbjct: 320 SYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKFI-AATE 378 Query: 63 KD 64 KD Sbjct: 379 KD 380 >gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 441 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H+LRHS+A+ L++ G DL + ++GHS L+ T+ Y+++ + Sbjct: 370 FHSLRHSYASRLVARGVDLYVVGQLMGHSDLTMTKRYSHLRPDTLQAAVR 419 >gi|253569479|ref|ZP_04846889.1| transposase [Bacteroides sp. 1_1_6] gi|251841498|gb|EES69579.1| transposase [Bacteroides sp. 1_1_6] Length = 415 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|158320318|ref|YP_001512825.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140517|gb|ABW18829.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 380 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+ AT LL G D + IQ+ LGHS ++TT IY++VN + + ++ Sbjct: 320 NIRFHDLRHTNATLLLQQGIDFKVIQTRLGHSDINTTLNIYSHVNVEMQKKATEK 374 >gi|331083353|ref|ZP_08332466.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404434|gb|EGG83979.1| hypothetical protein HMPREF0992_01390 [Lachnospiraceae bacterium 6_1_63FAA] Length = 411 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + + H LRH+F T L N +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 349 NFSCHHLRHTFCTRLCENETNLKVIQSIMGHRNIETTMDIYAEATEEKKQESFEN 403 >gi|255012361|ref|ZP_05284487.1| integrase [Bacteroides sp. 2_1_7] Length = 310 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++++RHSFAT L G + I +LGH + TTQIY S M ++ Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKA 297 >gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 311 SITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 364 >gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 307 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + HT RH+FA + + +GGD+ S+Q +LGH + T Y ++ + E D+ +P Sbjct: 242 VKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYVSLFGSALKEQNDKYNPLN 301 Query: 61 T 61 Sbjct: 302 R 302 >gi|255014213|ref|ZP_05286339.1| transposase [Bacteroides sp. 2_1_7] Length = 415 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + T H RH+ AT LLS+G + ++ +LGH+ L TTQIY + ++++ + Sbjct: 344 IRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDLKTTQIYARITNQKISSDMEILSHK 403 Query: 60 ITQKDKK 66 + + +K+ Sbjct: 404 LEKMEKE 410 >gi|237794601|ref|YP_002862153.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261244|gb|ACQ52277.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 355 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT L+SNG D +++ +LGH+ T + Y++VN M + Sbjct: 298 ITVHELRHTYATKLISNGVDFKTVAQLLGHTVEQTMKTYSHVNDDMMKKA 347 >gi|331082875|ref|ZP_08331996.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400016|gb|EGG79669.1| hypothetical protein HMPREF0992_00920 [Lachnospiraceae bacterium 6_1_63FAA] Length = 380 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + TAHT RH+FAT + G + +++Q ILGH L T +Y +V + ++ Sbjct: 319 LPFTAHTFRHTFATRAIECGMNPKTLQKILGHGTLQMTMDLYCHVTEDTLFSEMEKF 375 >gi|170757613|ref|YP_001781774.1| phage integrase family site specific recombinase [Clostridium botulinum B1 str. Okra] gi|169122825|gb|ACA46661.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 354 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + T H LRH++AT L++NG D ++ ILGHS T + Y++VN+ + + + Sbjct: 296 TITFHELRHTYATRLIANGVDFKTAAQILGHSVEQTLKTYSHVNNDMLNKAH 347 >gi|167571697|ref|ZP_02364571.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786] Length = 151 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y +++ + + P Sbjct: 98 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVTERYAHLSPDQGRAAVQKLLP 150 >gi|116626672|ref|YP_828828.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229834|gb|ABJ88543.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 371 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ A LL G D I LGH + TTQIY + + E +T+P Sbjct: 256 VSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311 >gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424] gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 273 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 ++H LRHS A+H + G +LR +Q LGHS+L TT+ Y ++N Sbjct: 219 KASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDE 265 >gi|317505704|ref|ZP_07963596.1| integrase [Prevotella salivae DSM 15606] gi|315663181|gb|EFV02956.1| integrase [Prevotella salivae DSM 15606] Length = 346 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+F T LS G + SI ++GH+ +++TQIY V ++ E D+ Sbjct: 290 SYHMGRHTFGTMCLSAGIPIESIAKMMGHASIASTQIYAQVTDCKISEDMDR 341 >gi|291530087|emb|CBK95672.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 418 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + H+LRH+F T + G +++ IQ LGH +STT IYT+V + Sbjct: 351 SCHSLRHTFTTRMCEAGVNVKVIQDTLGHKDISTTLNIYTDVTKE 395 >gi|154495043|ref|ZP_02034048.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC 43184] gi|154085593|gb|EDN84638.1| hypothetical protein PARMER_04089 [Parabacteroides merdae ATCC 43184] Length = 392 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+ AT LL NG ++ ++Q +LGH + TT+IY+++ Sbjct: 337 SFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377 >gi|266619164|ref|ZP_06112099.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288869310|gb|EFD01609.1| site-specific recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 402 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+LL G + +++Q + GH TT IY V + + E+ + Sbjct: 337 FDVTPHQLRHTYITNLLYAGVNPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFEVVNDA 396 >gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F +HL G + IQ + GH+ LSTT Y ++ + Sbjct: 320 FHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLAEGHKEQAIR 369 >gi|312890652|ref|ZP_07750186.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311296818|gb|EFQ73953.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 409 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT + L+NG + S+ +LGH++LSTTQ+Y V ++ + + Sbjct: 348 PLTFHIARHTFATTITLTNGVPIESVSKMLGHTKLSTTQVYAKVVESKLSDDMAR 402 >gi|149921966|ref|ZP_01910409.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149817228|gb|EDM76706.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 531 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S HTLRH+FATH ++ G L + LGHS + TT Y + + Sbjct: 419 SVGVHTLRHTFATHAVAAGVPLSLVSRQLGHSDVRTTMRYAHHAPE 464 >gi|260590881|ref|ZP_05856339.1| integrase [Prevotella veroralis F0319] gi|260537172|gb|EEX19789.1| integrase [Prevotella veroralis F0319] Length = 112 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 46 TLTFHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERIFRDVERIIPLI 105 Query: 61 TQKDKKN 67 Q N Sbjct: 106 AQYRLTN 112 >gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 393 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT L+ G + + ILGH + T+IY + K+ +E + Sbjct: 329 ITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLETVN 380 >gi|306845239|ref|ZP_07477815.1| Phage integrase [Brucella sp. BO1] gi|306274398|gb|EFM56205.1| Phage integrase [Brucella sp. BO1] Length = 308 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18] gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18] Length = 328 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT+IY V ++ + Sbjct: 244 ATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQ 296 >gi|254713770|ref|ZP_05175581.1| Phage integrase [Brucella ceti M644/93/1] gi|254717173|ref|ZP_05178984.1| Phage integrase [Brucella ceti M13/05/1] gi|261218989|ref|ZP_05933270.1| phage integrase [Brucella ceti M13/05/1] gi|261321511|ref|ZP_05960708.1| phage integrase [Brucella ceti M644/93/1] gi|260924078|gb|EEX90646.1| phage integrase [Brucella ceti M13/05/1] gi|261294201|gb|EEX97697.1| phage integrase [Brucella ceti M644/93/1] Length = 308 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|254701428|ref|ZP_05163256.1| Phage integrase [Brucella suis bv. 5 str. 513] gi|261751967|ref|ZP_05995676.1| phage integrase [Brucella suis bv. 5 str. 513] gi|261741720|gb|EEY29646.1| phage integrase [Brucella suis bv. 5 str. 513] Length = 308 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGGIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ AT L G L+ +Q LGHS ++TTQ Y + ++M + Sbjct: 254 KLTPHWLRHTNATLALLQGASLQQVQETLGHSHINTTQRYLH-TVEQMKKA 303 >gi|291515442|emb|CBK64652.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 409 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T HT RH+FAT + L+ G L ++ +LGH ++TTQIY + + ++ D Sbjct: 341 FNPTTHTGRHTFATTVTLTQGVPLETVSKMLGHKHITTTQIYAKITNDKIGRDMD 395 >gi|218132239|ref|ZP_03461043.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC 43243] gi|217992848|gb|EEC58848.1| hypothetical protein BACPEC_00096 [Bacteroides pectinophilus ATCC 43243] Length = 384 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + K E Sbjct: 324 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRE 372 >gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] Length = 267 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 209 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 266 >gi|218905655|ref|YP_002453489.1| transposase A [Bacillus cereus AH820] gi|218538676|gb|ACK91074.1| transposase A [Bacillus cereus AH820] Length = 361 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Y +++ + M Y Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAY 355 >gi|150010374|ref|YP_001305117.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149938798|gb|ABR45495.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 310 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T++++RHSFAT L G + I +LGH + TTQIY S M ++ Sbjct: 244 VTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDRMSAVNKA 297 >gi|120401497|ref|YP_951326.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406881|ref|YP_956710.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|145221183|ref|YP_001131861.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315441527|ref|YP_004074404.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|119954315|gb|ABM11320.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959699|gb|ABM16704.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|145213669|gb|ABP43073.1| phage integrase family protein [Mycobacterium gilvum PYR-GCK] gi|315265182|gb|ADU01923.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 355 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y + Sbjct: 288 SPHALRRACATHNYERGVDLVAIQQLLGHWTVSSTMRYVRPSATFIEDAYRRA 340 >gi|307564607|ref|ZP_07627144.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346692|gb|EFN91992.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 417 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410 Query: 61 TQ 62 Q Sbjct: 411 AQ 412 >gi|222080177|ref|YP_002540040.1| integrase/recombinase [Agrobacterium vitis S4] gi|221738822|gb|ACM39601.1| integrase/recombinase [Agrobacterium vitis S4] Length = 335 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H LRHS A +L D+R + LGH+ + TT++Y ++ +E + P Sbjct: 252 PLSPHLLRHSCAVLMLQATRDIRKVALWLGHADIRTTEVYLRMDPSEKLEAIEAVLPPAL 311 Query: 62 QKDK 65 ++ + Sbjct: 312 RRGR 315 >gi|218262944|ref|ZP_03477242.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii DSM 18315] gi|218223043|gb|EEC95693.1| hypothetical protein PRABACTJOHN_02922 [Parabacteroides johnsonii DSM 18315] Length = 392 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 29/41 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 + H RH+ AT LL NG ++ ++Q +LGH + TT+IY+++ Sbjct: 337 SFHMARHTNATLLLYNGANITTVQKLLGHKSVRTTEIYSDI 377 >gi|330997617|ref|ZP_08321462.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329570145|gb|EGG51885.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 410 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H+ RHSFA+ + L G + +I +LGH + TQ Y V K++ E D+ + T+ Sbjct: 345 SYHSGRHSFASLITLEAGVPMETICKMLGHKDVKMTQRYARVTQKKLFEDMDKFI-AATE 403 Query: 63 KD 64 KD Sbjct: 404 KD 405 >gi|149920807|ref|ZP_01909270.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149818325|gb|EDM77777.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 421 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 HTLRH+FATH ++ G L + LGH+ + TT Y + + Sbjct: 330 KVGVHTLRHTFATHAVAAGVPLSVVSRQLGHADIRTTMRYAHHAPE 375 >gi|114319153|gb|ABI63576.1| integrase [Klebsiella pneumoniae] Length = 304 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 T HTLRHSFAT LL +G D+R++Q +LGHS Sbjct: 273 PATPHTLRHSFATALLRSGYDIRTVQDLLGHS 304 >gi|150389382|ref|YP_001319431.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949244|gb|ABR47772.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 32/52 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+ T+ + +G D+ +Q I GH ++TT+ YT+++ K + ++ + Sbjct: 308 FHDLRHTCVTNFVESGLDISVVQKIAGHKHVTTTENYTHLSKKHINKVISKY 359 >gi|161868003|ref|YP_001598184.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|313116779|ref|YP_004032929.1| integrase/recombinase [Edwardsiella tarda] gi|161087382|gb|ABX56852.1| Int2 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|312192416|gb|ADQ43902.1| integrase/recombinase [Edwardsiella tarda] Length = 363 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LR +FAT +L NG DL +++ +GH+ ++TTQ Y +R+ + D+ Sbjct: 308 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 359 >gi|84387844|ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01] gi|84377359|gb|EAP94227.1| Site-specific recombinase XerD-like [Vibrio splendidus 12B01] Length = 411 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RHSFAT+L+ NG D+ ++Q ++ H LS+TQ Y + +++ Sbjct: 341 EVCFHVARHSFATNLIENGVDVLTVQRLMNHKDLSSTQKYVKHSQQKL 388 >gi|303236998|ref|ZP_07323571.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482807|gb|EFL45829.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 417 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ ++ P I Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFRDVEKILPLI 410 Query: 61 TQ 62 Q Sbjct: 411 AQ 412 >gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 387 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 33/47 (70%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRHSFA+ L+ +G L S+Q+ILGH+ + T Y+++++ +++ Sbjct: 328 PHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLSNTSLVD 374 >gi|313156953|gb|EFR56386.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 407 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + LS G + ++ +LGH+ + TTQIY + ++++ Sbjct: 340 KLTFHMARHTFATTITLSQGMPIETVSCLLGHTNIKTTQIYAKITNEKI 388 >gi|229496223|ref|ZP_04389943.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229316801|gb|EEN82714.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 388 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSF T L G + SI ++GHS +++TQIY + +++ D Sbjct: 332 PLSYHVGRHSFGTLTLEAGIPIESIAKMMGHSSIASTQIYAQITDQKIARDMD 384 >gi|126660765|ref|ZP_01731862.1| phage integrase [Cyanothece sp. CCY0110] gi|126617956|gb|EAZ88728.1| phage integrase [Cyanothece sp. CCY0110] Length = 362 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|319642758|ref|ZP_07997399.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|317385613|gb|EFV66551.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 287 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LG+S + TTQIY V KR+ E D+ Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDRF 276 >gi|259419368|ref|ZP_05743284.1| putative transposase A [Silicibacter sp. TrichCH4B] gi|259344609|gb|EEW56496.1| putative transposase A [Silicibacter sp. TrichCH4B] Length = 369 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT + G ++Q LGH+ +T+IYT V+ ++ Y + Sbjct: 311 VTPHALRHTHATRMWEAGMRELTLQRRLGHASPESTRIYTRVSDATVLAEYSRA 364 >gi|167770452|ref|ZP_02442505.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM 17241] gi|167667047|gb|EDS11177.1| hypothetical protein ANACOL_01797 [Anaerotruncus colihominis DSM 17241] Length = 354 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H RH+FA+ + +G +Q ILGH+ STT +IY + + + + + + Sbjct: 302 PHCTRHTFASMMAKSGARPEMLQKILGHANYSTTAEIYVHADFEDLKQEVN 352 >gi|254885277|ref|ZP_05257987.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777930|ref|ZP_06743369.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|319643368|ref|ZP_07997994.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|254838070|gb|EET18379.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448219|gb|EFG16780.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|317384997|gb|EFV65950.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 386 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+ RH+ AT L+ G ++ ++Q +LGH L+TTQIY V ++ + Sbjct: 331 SFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKC 383 >gi|254883690|ref|ZP_05256400.1| transposase [Bacteroides sp. 4_3_47FAA] gi|254836483|gb|EET16792.1| transposase [Bacteroides sp. 4_3_47FAA] Length = 287 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RHSFA+ + L G + +I +LG+S + TTQIY V KR+ E D+ Sbjct: 225 HMGRHSFASLVTLEEGVPIETISKMLGYSNIKTTQIYARVTPKRLFEDMDRF 276 >gi|253571563|ref|ZP_04848969.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838771|gb|EES66856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 412 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|60680742|ref|YP_210886.1| putative transposase [Bacteroides fragilis NCTC 9343] gi|60492176|emb|CAH06939.1| putative transposase [Bacteroides fragilis NCTC 9343] Length = 412 Score = 68.0 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|303239112|ref|ZP_07325642.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302593450|gb|EFL63168.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+ A H+ +G +L ++ LGH+ +STT +Y + + ++ Sbjct: 258 ISPHVFRHTKAMHVYESGNNLIYVRDFLGHADISTTGVYARTSLNMKRQALEK 310 >gi|295133331|ref|YP_003584007.1| transposase [Zunongwangia profunda SM-A87] gi|294981346|gb|ADF51811.1| putative transposase [Zunongwangia profunda SM-A87] Length = 414 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + HT RH+FAT + L+NG + ++ +LGH++LSTTQIY V ++ D Sbjct: 342 SFHTARHTFATTITLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISNDIDNL--REKL 399 Query: 63 KDKK 66 D+K Sbjct: 400 NDEK 403 >gi|46580602|ref|YP_011410.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46450021|gb|AAS96670.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 309 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 HTLRH+FA+ L+ G L ++ ++GHS + T+ Y + E +Q Sbjct: 251 KVVFHTLRHTFASWLVQRGVPLYTVADLMGHSVVEMTRRYAKLAPDTRREAVNQ 304 >gi|150004395|ref|YP_001299139.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|149932819|gb|ABR39517.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] Length = 386 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+ RH+ AT L+ G ++ ++Q +LGH L+TTQIY V ++ + Sbjct: 331 SFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIIRDLKKC 383 >gi|281426313|ref|ZP_06257226.1| integrase [Prevotella oris F0302] gi|281399555|gb|EFB30386.1| integrase [Prevotella oris F0302] Length = 406 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLQTTQIYAAVSSERIHRDMQK 393 >gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 389 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L N L+++ +LGHS + T YT+V K+ + ++ Sbjct: 331 FHALRHTFATKLFENEVALKTVSELLGHSSIDMTANTYTHVIPKQKSDAVEK 382 >gi|296269753|ref|YP_003652385.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296092540|gb|ADG88492.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 364 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 7/63 (11%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHP 58 S T H LRH+ ATHLL++G D+ +++ +LGH LST Y + +E + HP Sbjct: 281 SVTPHGLRHTTATHLLADGTDMDAVRRVLGHGDLSTLGRY----RDELPGELEAAMRVHP 336 Query: 59 SIT 61 + Sbjct: 337 LLR 339 >gi|213963816|ref|ZP_03392064.1| integrase [Capnocytophaga sputigena Capno] gi|213953496|gb|EEB64830.1| integrase [Capnocytophaga sputigena Capno] Length = 411 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+F T ++ G L S+ ++GH L TTQIY + + ++ + D Sbjct: 343 PISFHWARHTFGTLFVTEGIPLESVSKMMGHKDLRTTQIYAKITNNKISKDVD 395 >gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] Length = 265 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH FAT G D+ ++QS+LGH++L TT IY ++ + Sbjct: 206 VTPHQLRHRFATVAYRKGRDIVAVQSLLGHAKLDTTMIYVALDDSARQQ 254 >gi|325299288|ref|YP_004259205.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324318841|gb|ADY36732.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 409 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH+F + + L G + +I +LGH+ L+TTQ+Y V K++ E D+ Sbjct: 347 HMGRHTFGSLITLEAGVPIETISKMLGHTNLTTTQLYARVTPKKLFEDMDKF 398 >gi|240147525|ref|ZP_04746126.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200274|gb|EEU98558.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|291551016|emb|CBL27278.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 431 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3] gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3] Length = 391 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 S T H LRHS A+ L+++G L +Q +LGHS T Y++++ + + + I Sbjct: 327 SFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQSAANSASDRIK 386 >gi|154505076|ref|ZP_02041814.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149] gi|153794555|gb|EDN76975.1| hypothetical protein RUMGNA_02586 [Ruminococcus gnavus ATCC 29149] Length = 431 Score = 68.0 bits (166), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|333030412|ref|ZP_08458473.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|332741009|gb|EGJ71491.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 406 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT + L+ G + ++ +LGH+ + TTQIY + ++++ + Sbjct: 339 NLTFHLARHTFATTVTLAKGIPIETVSKMLGHTNIQTTQIYARITNEKISKDMR 392 >gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820] gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820] Length = 306 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + + HT RHSFA + G D+ ++Q +L HS L T+ Y ++ + E ++ +P Sbjct: 243 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNEKFNPLN 302 Query: 61 T 61 + Sbjct: 303 S 303 >gi|332826664|gb|EGJ99490.1| hypothetical protein HMPREF9455_04142 [Dysgonomonas gadei ATCC BAA-286] Length = 447 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + HT RH+F TH+ LS G + ++ ++GH ++TTQIY V K++ E + + Sbjct: 352 ISFHTARHNFGTHITLSQGVPIETVSRMMGHKNIATTQIYAKVTDKKVDEDMKRLRTRVA 411 Query: 62 QKDKK 66 K K Sbjct: 412 SKSNK 416 >gi|317499110|ref|ZP_07957389.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316893630|gb|EFV15833.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|298483595|ref|ZP_07001770.1| integrase [Bacteroides sp. D22] gi|298270165|gb|EFI11751.1| integrase [Bacteroides sp. D22] Length = 281 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHS+AT LS G + +I LGH +STTQIY ++ ++ E Sbjct: 207 TYHMARHSYATLCLSMGVPIETISQTLGHRSISTTQIYADITRTKINE 254 >gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093] gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093] Length = 292 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 H LRHS A +L NG D ++Q +LGH+ L+ T Y +N+ + + P Sbjct: 230 PHRLRHSAAITMLRNGMDPLTLQRMLGHTSLNMTMRYVALNTTDLQNAHAVASPLA 285 >gi|288561514|ref|YP_003428920.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548146|gb|ADC52028.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 362 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S + H LRHSFAT D+ ++ LGHS + TT IYT++ + + D Sbjct: 301 SLSVHKLRHSFATRYHREINDVPKLRRQLGHSSIQTTMIYTHIKNDDLKNAVDN 354 >gi|160895054|ref|ZP_02075828.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50] gi|156863485|gb|EDO56916.1| hypothetical protein CLOL250_02604 [Clostridium sp. L2-50] gi|295099078|emb|CBK88167.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|189467428|ref|ZP_03016213.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM 17393] gi|189435692|gb|EDV04677.1| hypothetical protein BACINT_03816 [Bacteroides intestinalis DSM 17393] Length = 412 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|153811811|ref|ZP_01964479.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174] gi|149832214|gb|EDM87299.1| hypothetical protein RUMOBE_02204 [Ruminococcus obeum ATCC 29174] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|238750823|ref|ZP_04612321.1| Int [Yersinia rohdei ATCC 43380] gi|238710967|gb|EEQ03187.1| Int [Yersinia rohdei ATCC 43380] Length = 71 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + NGG++ ++Q ILGH+ + T Y N++ + Sbjct: 13 HVLRHTFASHFMMNGGNIIALQQILGHANIQQTMAYANLSPDYLQNAV 60 >gi|295108704|emb|CBL22657.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|291538125|emb|CBL11236.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|237722535|ref|ZP_04553016.1| transposase [Bacteroides sp. 2_2_4] gi|229448345|gb|EEO54136.1| transposase [Bacteroides sp. 2_2_4] Length = 412 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|167567251|ref|ZP_02360167.1| putative bacteriophage integrase [Burkholderia oklahomensis EO147] gi|167570579|ref|ZP_02363453.1| putative bacteriophage integrase [Burkholderia oklahomensis C6786] gi|167581270|ref|ZP_02374144.1| putative bacteriophage integrase [Burkholderia thailandensis TXDOH] Length = 126 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 H LRH+FA+ L+ G L ++ +LGHS ++ T+ Y ++ E H Sbjct: 74 HDLRHTFASWLVMAGVSLYVVKDLLGHSSITVTERYAHLAPHMGREAVRTLH 125 >gi|317501286|ref|ZP_07959489.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316897250|gb|EFV19318.1| integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K + Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419 >gi|212693707|ref|ZP_03301835.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855] gi|237707923|ref|ZP_04538404.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237723463|ref|ZP_04553944.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265758458|ref|ZP_06090985.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|212663728|gb|EEB24302.1| hypothetical protein BACDOR_03227 [Bacteroides dorei DSM 17855] gi|229438167|gb|EEO48244.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229458059|gb|EEO63780.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263233416|gb|EEZ19072.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 386 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+ RH+ AT L+ G ++ ++Q +LGH L+TTQIY V ++ + Sbjct: 331 SFHSARHTNATLLIYKGANITTVQKLLGHKNLATTQIYGEVMGSTIVRDLKKC 383 >gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 397 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H LRHS A+ L +NG L+ IQ LGHS +STT IYT++N Sbjct: 338 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLNFS 381 >gi|255282217|ref|ZP_05346772.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255267165|gb|EET60370.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 429 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTN 43 H+LRH+ AT L+ NG D++ +Q LGH + TT Q Y + Sbjct: 367 HSLRHTHATTLIENGADIKDVQERLGHDNIQTTMQTYVH 405 >gi|226324083|ref|ZP_03799601.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758] gi|225207632|gb|EEG89986.1| hypothetical protein COPCOM_01861 [Coprococcus comes ATCC 27758] gi|295109798|emb|CBL23751.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|160894256|ref|ZP_02075033.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50] gi|197302203|ref|ZP_03167262.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC 29176] gi|156863957|gb|EDO57388.1| hypothetical protein CLOL250_01809 [Clostridium sp. L2-50] gi|197298634|gb|EDY33175.1| hypothetical protein RUMLAC_00930 [Ruminococcus lactaris ATCC 29176] gi|291526722|emb|CBK92308.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4] Length = 316 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RHSFA + G D+ ++Q +L HS L T+ Y ++ + E D+ +P Sbjct: 253 VRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERYLSLWGTALREQNDKYNP 310 >gi|254438028|ref|ZP_05051522.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307] gi|198253474|gb|EDY77788.1| hypothetical protein OA307_2898 [Octadecabacter antarcticus 307] Length = 103 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H LRHS A H L GD+R + LGH+ + TT++Y + + I D H + + Sbjct: 16 VTPHVLRHSCAMHTLQATGDVRKVALWLGHASIQTTEMYLRADPTEKLAILDAHHALLIK 75 >gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424] gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 289 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + + H LRH+ A+H L G L +Q+ LGHS ++TT+ Y + +Y Sbjct: 235 NVSPHWLRHAHASHSLDRGAPLHLVQATLGHSSVATTERYLHARPNDSSAMY 286 >gi|154498965|ref|ZP_02037343.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC 29799] gi|150271805|gb|EDM99031.1| hypothetical protein BACCAP_02957 [Bacteroides capillosus ATCC 29799] Length = 397 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H LRH++AT + +G + +Q +LGH+ + TT Y +V + + + Q Sbjct: 336 HALRHTYATRAIESGIQPKVLQKLLGHASIKTTMDWYVHVTTDSLDQAVRQF 387 >gi|291531553|emb|CBK97138.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 383 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 TAH LRH+F T + G D+ + + GH +STT +IYT+++ + D+ + + Sbjct: 316 PFTAHCLRHTFITLMYLAGVDIMTAKEQAGHKDISTTLKIYTHLDKTYKAKNIDKFNEHL 375 Query: 61 TQK 63 K Sbjct: 376 NAK 378 >gi|291524087|emb|CBK89674.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 431 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 371 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 422 >gi|315173654|gb|EFU17671.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1346] Length = 185 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48 + H RH+ + + G + +Q LGH + TT IY++V ++ Sbjct: 125 ISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKTTMNIYSHVTPQQ 171 >gi|225407933|ref|ZP_03761122.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme DSM 15981] gi|225042527|gb|EEG52773.1| hypothetical protein CLOSTASPAR_05154 [Clostridium asparagiforme DSM 15981] Length = 432 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH++ ++LLS G + +Q +LGH+ +STT IY + + Sbjct: 372 HFHQLRHTYTSNLLSGGAAPKDVQELLGHADVSTTMNIYAHATKEAKR 419 >gi|60115682|ref|YP_209473.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|168239749|ref|ZP_02664807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194733830|ref|YP_002112908.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|45758240|gb|AAS76452.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194709332|gb|ACF88555.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287589|gb|EDY26981.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 325 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LR +FAT +L NG DL +++ +GH+ ++TTQ Y +R+ + D+ Sbjct: 270 SPHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEQRLQDARDR 321 >gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 298 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S H RH+FAT++L+ G +L I +GH+ L+TT++Y + ++ +M Y Sbjct: 242 SLHPHCCRHTFATNMLAKGAELEFIADEMGHTNLNTTRVYARILTEDIMLAYQN 295 >gi|255038961|ref|YP_003089582.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254951717|gb|ACT96417.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 406 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT + L+NG + S+ +LGH + TTQ Y + +++ + + Sbjct: 345 NITFHLARHTFATTVTLTNGVPIESVSKMLGHRNIKTTQQYAKIVDRKISDDMAR 399 >gi|328463791|gb|EGF35344.1| integrase [Lactobacillus helveticus MTCC 5463] Length = 384 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H RH+ A+ L G + +++ LGH+ ++TT IYT+V + + Q Sbjct: 327 HGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIYTHVTDDQKKDTAKQA 378 >gi|229000956|ref|ZP_04160415.1| Integrase [Bacillus mycoides Rock3-17] gi|228758796|gb|EEM07881.1| Integrase [Bacillus mycoides Rock3-17] Length = 122 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + + HT RH+ A L NGGDL S+Q ILGH+ ++ T+ Y + ++ ++ Q Sbjct: 59 VRVSPHTFRHTCAKFYLKNGGDLFSLQKILGHTDIAMTRRYVQFMYEDVVALHKQY 114 >gi|170289797|ref|YP_001736613.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170173877|gb|ACB06930.1| integrase family protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 262 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 33/54 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H +RH+FA LS+GG R +Q ILGHS L TT+IY +++ + Y Sbjct: 198 LKTHPHAVRHAFAVWFLSSGGSPRVLQHILGHSNLRTTEIYLDISQSLVEREYR 251 >gi|167762059|ref|ZP_02434186.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC 43183] gi|167700018|gb|EDS16597.1| hypothetical protein BACSTE_00409 [Bacteroides stercoris ATCC 43183] Length = 409 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51 + + H RH+FAT LS G L ++Q +LGH + +TQ+Y + ++ RM E Sbjct: 342 VRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 399 >gi|119960917|ref|YP_947150.1| Tn554-related transposase A [Arthrobacter aurescens TC1] gi|119947776|gb|ABM06687.1| Tn554-related transposase A [Arthrobacter aurescens TC1] Length = 368 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H RHS AT +L + L + S+LGH+ ++TT +Y ++ ++ + ++ Sbjct: 306 PHWFRHSAATRMLRDSVPLEVVSSLLGHASVTTTMDVYGHLTAEDARMVLEKA 358 >gi|210619629|ref|ZP_03292053.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787] gi|210148832|gb|EEA79841.1| hypothetical protein CLONEX_04294 [Clostridium nexile DSM 1787] Length = 345 Score = 67.6 bits (165), Expect = 5e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYDQTHPS 59 + H++RH+ H+L G + I++ LGH+ + TTQIYT K + E + P Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTESPQATVDKHIREWNEMNFPR 324 Query: 60 ITQKDKKN 67 D+K+ Sbjct: 325 SIYIDEKD 332 >gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 442 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H +RHSFA+ ++ G L + +LGHS TT+ Y ++++ + E+ + Sbjct: 372 HDMRHSFASFAVAGGASLFLVSKLLGHSNSRTTERYAHLSADPLQEVVNH 421 >gi|225629572|ref|ZP_03787600.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591574|gb|EEH12586.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 280 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/35 (51%), Positives = 25/35 (71%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLS 36 + H +RHSFATHLL +G ++ IQ +LGH+ LS Sbjct: 246 KISPHVIRHSFATHLLDSGANIVLIQKVLGHTNLS 280 >gi|332653263|ref|ZP_08419008.1| phage integrase [Ruminococcaceae bacterium D16] gi|332518409|gb|EGJ48012.1| phage integrase [Ruminococcaceae bacterium D16] Length = 527 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRH+FAT L NG D++++ +I+GH TT YT++ + Sbjct: 319 KVRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHITDDMRRKA 370 >gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|300710747|ref|YP_003736561.1| phage integrase family protein [Halalkalicoccus jeotgali B3] gi|299124430|gb|ADJ14769.1| phage integrase family protein [Halalkalicoccus jeotgali B3] Length = 253 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+HTLRHS+A + +G + R++Q++LGH +L TT+IY + + + P Sbjct: 197 ITSHTLRHSYAVQAIKSGINPRNLQALLGHEKLETTEIYMKMAEEDHKKAARAFTP 252 >gi|295107720|emb|CBL21673.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 431 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K + Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419 >gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482] gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S ++ + + Sbjct: 330 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKN----VQR 385 Query: 63 KDKK 66 K KK Sbjct: 386 KRKK 389 >gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|317479187|ref|ZP_07938323.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36] gi|316904631|gb|EFV26449.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_1_36] Length = 101 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+ AT +L+ G DL ++ +LGH+ + TTQIY + + + D Sbjct: 46 FHCLRHTHATMMLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESKKKAID 95 >gi|295134620|ref|YP_003585296.1| transposase [Zunongwangia profunda SM-A87] gi|294982635|gb|ADF53100.1| putative transposase [Zunongwangia profunda SM-A87] Length = 392 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+FAT + L+NG + ++ +LGH++LSTTQIY V ++ D+ Sbjct: 335 SFHAARHTFATTVTLANGVPIETVSKLLGHTKLSTTQIYARVIDSKISNDMDK 387 >gi|261210225|ref|ZP_05924522.1| integrase [Vibrio sp. RC341] gi|260840765|gb|EEX67314.1| integrase [Vibrio sp. RC341] Length = 317 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+H + GG++ ++ +LGH ++TT Y ++ + + Sbjct: 261 HVLRHTFASHYVMGGGNIVKLRDVLGHKEITTTMRYAHLAPDHLEDALR 309 >gi|150005005|ref|YP_001299749.1| putative transposase [Bacteroides vulgatus ATCC 8482] gi|294776367|ref|ZP_06741846.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|149933429|gb|ABR40127.1| putative transposase [Bacteroides vulgatus ATCC 8482] gi|294449783|gb|EFG18304.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 412 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 388 >gi|320527410|ref|ZP_08028592.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] gi|320132267|gb|EFW24815.1| site-specific recombinase, phage integrase family [Solobacterium moorei F0204] Length = 307 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H+LRHSFAT + + D +++ +LGHS +STT +Y + N ++ + D+ Sbjct: 251 FHSLRHSFATRCIESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDK 302 >gi|297163231|gb|ADI12943.1| phage integrase family protein [Streptomyces bingchenggensis BCW-1] Length = 354 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LR + ATH G DL +IQ +LGH +S+T Y ++ + + Y + Sbjct: 287 SPHALRRACATHNYERGVDLVAIQQMLGHWTVSSTMRYVRPSATFIEDAYQRA 339 >gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 406 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S ++ + Sbjct: 329 ITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA----QK 384 Query: 63 KDKK 66 K +K Sbjct: 385 KRRK 388 >gi|153813073|ref|ZP_01965741.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174] gi|317501373|ref|ZP_07959575.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|149830875|gb|EDM85965.1| hypothetical protein RUMOBE_03481 [Ruminococcus obeum ATCC 29174] gi|316897237|gb|EFV19306.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] Length = 431 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K + Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419 >gi|153814731|ref|ZP_01967399.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756] gi|154502994|ref|ZP_02040054.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149] gi|145847762|gb|EDK24680.1| hypothetical protein RUMTOR_00946 [Ruminococcus torques ATCC 27756] gi|153796348|gb|EDN78768.1| hypothetical protein RUMGNA_00816 [Ruminococcus gnavus ATCC 29149] Length = 431 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LLSNG + +Q +LGHS +STT IY + K + Sbjct: 371 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 419 >gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis] gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|51596210|ref|YP_070401.1| prophage integrase [Yersinia pseudotuberculosis IP 32953] gi|186895231|ref|YP_001872343.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|51589492|emb|CAH21114.1| putative prophage integrase [Yersinia pseudotuberculosis IP 32953] gi|186698257|gb|ACC88886.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 125 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA+H + GG++ +Q ILGHS + T Y + + Sbjct: 67 HVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFAPDHL 110 >gi|327403680|ref|YP_004344518.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327319188|gb|AEA43680.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 413 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FAT + L+NG + S+ +LGH+ L TTQ Y + K++ + H T+ Sbjct: 345 TFHIARHTFATTVTLTNGVSIESVSKMLGHTNLKTTQHYAKILDKKIGDDMRSLHEKYTK 404 >gi|302385516|ref|YP_003821338.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302196144|gb|ADL03715.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 410 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H LRH+F T L D++ IQ ++GH+ STT IY+++ + M Q Sbjct: 350 SVHNLRHTFCTRLCEMTNDIKFIQQVMGHADFSTTMDIYSHITQEAMQNKVKQ 402 >gi|218128919|ref|ZP_03457723.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697] gi|217988882|gb|EEC55199.1| hypothetical protein BACEGG_00491 [Bacteroides eggerthii DSM 20697] Length = 350 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H+LRH+ A+H L G ++ +IQ ++GH+ + TT Y V+ ++ + Sbjct: 267 NLHCHSLRHARASHWLEQGLNIIAIQRLMGHADIRTTMRYIFVSVEQKNKAL 318 >gi|304382579|ref|ZP_07365073.1| integrase [Prevotella marshii DSM 16973] gi|304336204|gb|EFM02446.1| integrase [Prevotella marshii DSM 16973] Length = 417 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FA+ + LS G + S+ +LGHS++ TTQ+Y + +R+ + +Q P + Sbjct: 351 TLTYHMARHTFASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFQDVEQILPQL 410 Query: 61 T 61 Sbjct: 411 A 411 >gi|295099168|emb|CBK88257.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 403 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYDQT 56 T H LRH++ T+LL G D +++Q + GH TT IY V + ++ + + Sbjct: 337 FDVTPHQLRHTYITNLLYAGIDPKTVQYLAGHENSKTTMDIYAQVKYNKPEELLSVVNAA 396 >gi|295085954|emb|CBK67477.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 386 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51 + + H RH+FAT LS G L ++Q +LGH + +TQ+Y + ++ RM E Sbjct: 319 VRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 376 >gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|254931488|ref|ZP_05264847.1| transposase A [Listeria monocytogenes HPB2262] gi|293583040|gb|EFF95072.1| transposase A [Listeria monocytogenes HPB2262] Length = 361 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Y +++ + M Y Sbjct: 299 ITFTAHMLRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKAY 355 >gi|255034767|ref|YP_003085388.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947523|gb|ACT92223.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 430 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+FA +L+NG L + +LGH + TTQ Y V +R+ Sbjct: 365 HLARHTFADMMLNNGVPLEDVGKMLGHRNIRTTQRYARVRKQRI 408 >gi|319945859|ref|ZP_08020109.1| phage integrase family site-specific recombinase [Streptococcus australis ATCC 700641] gi|319747924|gb|EFW00168.1| phage integrase family site-specific recombinase [Streptococcus australis ATCC 700641] Length = 423 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63 H RH+ A+ +L++G + + +Q +GH +STT IY ++ R E D ++Q Sbjct: 360 FHLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQI 419 Query: 64 DKKN 67 +N Sbjct: 420 KGEN 423 >gi|282858566|ref|ZP_06267736.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282588657|gb|EFB93792.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] Length = 380 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 26/41 (63%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 + T H RH+FAT LS G + S+ +LGH+ + TTQIY Sbjct: 340 NLTFHLARHTFATMSLSKGVPIESVSKMLGHTNIKTTQIYA 380 >gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 383 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RHS A+ L S G ++ +Q LGHS + TT IYT+V + E ++ Sbjct: 323 ITIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTHVTKNQNKEAVNK 376 >gi|111020166|ref|YP_703138.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|110819696|gb|ABG94980.1| possible tyrosine recombinase [Rhodococcus jostii RHA1] Length = 290 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS+ THL+ +R +Q +GH+ STT IYT V+++ ++ + Sbjct: 228 HCLRHSYVTHLIEFDYPVRFVQEQVGHAHASTTAIYTGVSNEYRNQLLTRA 278 >gi|124001375|emb|CAL64013.1| transposase A [Staphylococcus warneri] Length = 361 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Y +++ + M Y + Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKKY 355 >gi|15894591|ref|NP_347940.1| integrase XerD family protein [Clostridium acetobutylicum ATCC 824] gi|15024240|gb|AAK79280.1|AE007643_3 Integrase XerD family protein (similarity only with C-term. part [Clostridium acetobutylicum ATCC 824] Length = 164 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+ AT LL G DL+ IQ LGH ++TT IY++VN ++ Sbjct: 103 NVRFHDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVNKSMQKAATEK 157 >gi|94310217|ref|YP_583427.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354069|gb|ABF08158.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 331 Score = 67.6 bits (165), Expect = 6e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 S T HTLRH+ A L+ +G DL I LGH TTQIY + + + Sbjct: 254 SITPHTLRHTAAMSLMHHGVDLTVIALWLGHESSETTQIYLHADMQLKERALAHA 308 >gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3] gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3] Length = 312 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 254 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 311 >gi|330825997|ref|YP_004389300.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329311369|gb|AEB85784.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 414 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H +RH FA+ L+ G DL +++ +LGH+ L T Y ++ + + + Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHLAPEHKAQAVAK 409 >gi|296877324|ref|ZP_06901364.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 15912] gi|296431844|gb|EFH17651.1| phage integrase family site-specific recombinase [Streptococcus parasanguinis ATCC 15912] Length = 423 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63 H RH+ A+ +L++G + + +Q +GH +STT IY ++ R E D ++Q Sbjct: 360 FHLFRHTHASLMLNSGANWKELQERMGHKSISTTMDIYAELDPNRKNEAVDILMERLSQI 419 Query: 64 DKKN 67 +N Sbjct: 420 KGEN 423 >gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] Length = 407 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 337 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + NG + +Q+ILGH+ L T++Y N+ S + + + + P Sbjct: 274 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 331 >gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 305 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN-SKRMMEIYDQTH 57 + AH LRH+FAT+ L +GGDL +++ ++GHS L T +Y ++ +K++++ Q+H Sbjct: 241 LRLHAHLLRHTFATNYLVDGGDLETLRLLMGHSDLQVTMMYLHLAENKKLLQRKHQSH 298 >gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] Length = 405 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSFA ++L+NG +++++ S+LGHS L T+ YT + E + P + Sbjct: 347 ITWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDSLKEAAINSLPKLK 404 >gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 384 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRH+ AT LL N +++ + ILGH ++TT IY++V E+ Sbjct: 327 HALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHVLDDSKREV 374 >gi|325965567|ref|YP_004243471.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471654|gb|ADX75337.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 131 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS+ THL+ G D +Q+ +GHS STT +YT+V+S + Q Sbjct: 68 HCLRHSYVTHLIEAGYDAAFVQTQVGHSYASTTGLYTSVSSDFKQKTVQQ 117 >gi|313158156|gb|EFR57561.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 462 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + + H RH+FA+ L+ +G ++ I+ +LGH+ + TT+IY + +M + D Sbjct: 396 NLSTHIGRHTFASRLVRSGQNMVVIRDLLGHASIRTTEIYAKIMQSQMNDAID 448 >gi|167567313|ref|ZP_02360229.1| phage integrase family protein [Burkholderia oklahomensis EO147] Length = 382 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRH+FA+ L+ G L + +LGHS TQ Y +++ Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365 >gi|258438229|ref|ZP_05689513.1| transposase A [Staphylococcus aureus A9299] gi|257848273|gb|EEV72264.1| transposase A [Staphylococcus aureus A9299] Length = 361 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Y +++ + M Y + Sbjct: 299 ITFTAHILRHTHATELIRSGWDAAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKKY 355 >gi|189467368|ref|ZP_03016153.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM 17393] gi|189435632|gb|EDV04617.1| hypothetical protein BACINT_03756 [Bacteroides intestinalis DSM 17393] Length = 408 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLAKGVPIETVSKMLGHTNIETTQIYARITNNKI 386 >gi|103485933|ref|YP_615494.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98976010|gb|ABF52161.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 334 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS A H L+ GD+R + LGH+ + +T+ Y + + ++I Sbjct: 253 VTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTETYLRADPEEKLQILAAH 306 >gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 506 Score = 67.2 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ L +NG L+ IQ LGHS +STT IYT+++ Sbjct: 438 FHDLRHSCASLLYANGVSLKQIQEWLGHSDISTTANIYTHLD 479 >gi|255283266|ref|ZP_05347821.1| transposase [Bryantella formatexigens DSM 14469] gi|255266120|gb|EET59325.1| transposase [Bryantella formatexigens DSM 14469] Length = 399 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+F T++ + G D++++Q ++G+S + T +YT+ + R + + Sbjct: 329 ITPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVTLNVYTHASYDRAAQQMAK 382 >gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRH+F +HL G R IQ + GHS L TT+ Y +++ Sbjct: 309 PHTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLSP 350 >gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 391 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G ++++Q ILGHS ++ T Y++V + ++E + Sbjct: 328 HDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTEEMLIEAERK 378 >gi|327404928|ref|YP_004345766.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320436|gb|AEA44928.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 420 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+H RH+FAT + L+NG + ++ ++LGHS + TTQIY V +++ + + Sbjct: 346 KLTSHIARHTFATTVTLANGVPIETVSAMLGHSNIRTTQIYAKVVEQKVSDDMLK 400 >gi|295133368|ref|YP_003584044.1| transposase [Zunongwangia profunda SM-A87] gi|294981383|gb|ADF51848.1| putative transposase [Zunongwangia profunda SM-A87] Length = 400 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT + LS G + ++ +LGH++LSTTQIY+ V +++ + + Sbjct: 344 KLTFHVARHTFATTVTLSKGIPIETVSKLLGHTKLSTTQIYSRVLDQKLSDDMRK 398 >gi|265751749|ref|ZP_06087542.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263236541|gb|EEZ22011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 411 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAARLN 401 Query: 62 Q 62 Q Sbjct: 402 Q 402 >gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] Length = 357 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T+ H RH++A + GGD +Q +LGH+ L+ T+ Y + + + YD +P Sbjct: 279 KTSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDALNP 335 >gi|149924447|ref|ZP_01912810.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814686|gb|EDM74262.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 377 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FA+H + G +R +Q LGHS + T Y ++ + + PS Sbjct: 311 IHTHVLRHTFASHAVMRGIPMRQVQEWLGHSSIVVTMRYAHLADGMGDAMIQRLDPS 367 >gi|303235575|ref|ZP_07322182.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484022|gb|EFL47010.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 481 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 412 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 465 >gi|301162340|emb|CBW21885.1| putative transposase [Bacteroides fragilis 638R] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|296164226|ref|ZP_06846819.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900417|gb|EFG79830.1| probable phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 390 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+ AT+ + G DL +Q +LGH+ L +T +Y + + + Sbjct: 328 FAVRPHMFRHTAATNWVRAGVDLDVVQRLLGHAALGSTAVYLHARDEDKRRAVEA 382 >gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 407 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|160890930|ref|ZP_02071933.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492] gi|255692284|ref|ZP_05415959.1| integrase [Bacteroides finegoldii DSM 17565] gi|293369271|ref|ZP_06615860.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294643197|ref|ZP_06721025.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809319|ref|ZP_06768030.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298376855|ref|ZP_06986810.1| integrase [Bacteroides sp. 3_1_19] gi|301309523|ref|ZP_07215465.1| integrase [Bacteroides sp. 20_3] gi|332877314|ref|ZP_08445062.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|156859929|gb|EDO53360.1| hypothetical protein BACUNI_03375 [Bacteroides uniformis ATCC 8492] gi|260622016|gb|EEX44887.1| integrase [Bacteroides finegoldii DSM 17565] gi|292635655|gb|EFF54158.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292641463|gb|EFF59653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443477|gb|EFG12233.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298266733|gb|EFI08391.1| integrase [Bacteroides sp. 3_1_19] gi|300832612|gb|EFK63240.1| integrase [Bacteroides sp. 20_3] gi|332684697|gb|EGJ57546.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 411 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLAARLN 401 Query: 62 Q 62 Q Sbjct: 402 Q 402 >gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 362 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T + G DLR +Q +LGH+ TT +Y +V + Sbjct: 304 SAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADR 347 >gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 332 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHP 58 + + HT RH+FAT L NG +QS+LGHS L+ T+ YT ++ S+ + + + P Sbjct: 268 LRCSPHTFRHTFATMSLLNGAGEFELQSLLGHSTLTMTRRYTASLTSQNAVLAHKKFSP 326 >gi|298383495|ref|ZP_06993056.1| integrase [Bacteroides sp. 1_1_14] gi|298263099|gb|EFI05962.1| integrase [Bacteroides sp. 1_1_14] Length = 411 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|253734958|ref|ZP_04869123.1| transposase [Staphylococcus aureus subsp. aureus TCH130] gi|253727140|gb|EES95869.1| transposase [Staphylococcus aureus subsp. aureus TCH130] Length = 675 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531 >gi|253572770|ref|ZP_04850170.1| int [Bacteroides sp. 1_1_6] gi|251837670|gb|EES65761.1| int [Bacteroides sp. 1_1_6] Length = 411 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|237713338|ref|ZP_04543819.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|317502920|ref|ZP_07961015.1| integrase [Prevotella salivae DSM 15606] gi|229446577|gb|EEO52368.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|315665954|gb|EFV05526.1| integrase [Prevotella salivae DSM 15606] Length = 437 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 368 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 421 >gi|188591566|ref|YP_001796165.1| Phage integrase [Cupriavidus taiwanensis] gi|170938961|emb|CAP63968.1| Phage integrase [Cupriavidus taiwanensis LMG 19424] Length = 616 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 H LRH+FATH ++N +Q +LGH+ L TT +Y R + + PS Sbjct: 562 PHALRHTFATHAVANEMPADVLQRLLGHASLQTTSLYVRAERARGLAAVSKLFPS 616 >gi|83944457|ref|ZP_00956910.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36] gi|83844659|gb|EAP82543.1| site-specific integrase/recombinase [Sulfitobacter sp. EE-36] Length = 353 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT +L ++ + +LGH+ + TT Y +V + + + D Sbjct: 285 FHDLRHTFATRMLRKTQNISLVSKLLGHTNIETTSRYAHVLTSDLRDALDGF 336 >gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 325 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRH+ AT LL NG +++IQ LGH+ +STT IY++V K E Sbjct: 267 HDLRHTSATLLLENGVAMKTIQKRLGHASMSTTSDIYSHVTEKMDREA 314 >gi|325271013|ref|ZP_08137599.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM 16608] gi|324986659|gb|EGC18656.1| hypothetical protein HMPREF9141_2809 [Prevotella multiformis DSM 16608] Length = 334 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH+ AT LLS G L IQ ILGH + TTQ+Y+ V + + + Sbjct: 278 ITFHCARHTCATVLLSKGVSLPIIQHILGHQSIKTTQVYSAVKDSTINKEIRKA 331 >gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 407 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|256838475|ref|ZP_05543985.1| integrase [Parabacteroides sp. D13] gi|256739394|gb|EEU52718.1| integrase [Parabacteroides sp. D13] Length = 419 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 350 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 403 >gi|229010700|ref|ZP_04167897.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048] gi|228750374|gb|EEM00203.1| Transposition regulatory protein TnpB [Bacillus mycoides DSM 2048] Length = 680 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH++A +L+ G D+ ++Q +L H+ T Y + + ++ Sbjct: 477 TNHQFRHTYAVKMLNGGADILTVQELLAHASPEMTLRYAKLLDNTKRKAFE 527 >gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7] Length = 311 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ ++ Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKV 295 >gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 420 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + + H RH+FAT + L+NG + ++ +LGH+++STTQIY V +++ + Sbjct: 346 NFSFHLARHTFATTVTLANGVPIETVSKMLGHTKISTTQIYAKVVERKVSDDMK 399 >gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 309 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 ++ T ++LRH FAT+ L GG +Q ILGHS ++ T Y N+N + + E + P Sbjct: 234 LNLTVYSLRHIFATNFLRGGGSALELQRILGHSNMTMTTRYANLNREDLQEAHRHASP 291 >gi|282857759|ref|ZP_06266968.1| integrative genetic element Ppu40, integrase [Pyramidobacter piscolens W5455] gi|282584429|gb|EFB89788.1| integrative genetic element Ppu40, integrase [Pyramidobacter piscolens W5455] Length = 336 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ G L S+ LGH L TT+ Y ++ + Sbjct: 284 PHILRHTCASRLVQKGAPLYSVAKWLGHRNLMTTRRYAHLRPDDL 328 >gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2] gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2] Length = 390 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q+ LGH+ + TT IY +++ ++ E ++ Sbjct: 321 ITPHGFRHTHCSLLFESGASIKEVQARLGHTDIKTTMDIYNHLSKRQTEETANRF 375 >gi|149198038|ref|ZP_01875086.1| Integron integrase [Lentisphaera araneosa HTCC2155] gi|149138950|gb|EDM27355.1| Integron integrase [Lentisphaera araneosa HTCC2155] Length = 382 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY---TNVNSKRMMEIYDQ 55 + R SFA H L GGD+R++Q +LGH ++ T IY T +N +R+ D Sbjct: 330 SFRDSFAVHYLEGGGDIRTLQKLLGHQKVGQTMIYNDLTQLNKRRIRSPLDN 381 >gi|114762531|ref|ZP_01441975.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601] gi|114767359|ref|ZP_01446166.1| INTEGRASE/RECOMBINASE [Pelagibaca bermudensis HTCC2601] gi|114540563|gb|EAU43638.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601] gi|114544786|gb|EAU47791.1| INTEGRASE/RECOMBINASE [Roseovarius sp. HTCC2601] Length = 334 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N + + +Q Sbjct: 256 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 308 >gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 388 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+ L G DL I +LGHS + TT Y ++ + + DQ Sbjct: 323 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQ 372 >gi|299146487|ref|ZP_07039555.1| integrase [Bacteroides sp. 3_1_23] gi|298516978|gb|EFI40859.1| integrase [Bacteroides sp. 3_1_23] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|293369636|ref|ZP_06616214.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292635340|gb|EFF53854.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|282878602|ref|ZP_06287378.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281299273|gb|EFA91666.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 418 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ + Sbjct: 351 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHREMQK 405 >gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4] gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 406 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S ++ + Sbjct: 329 ITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA----QR 384 Query: 63 KDKK 66 K +K Sbjct: 385 KRRK 388 >gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 381 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 S T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ ++ +I D+ Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDEF 375 >gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2] gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2] Length = 383 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKR 48 + H RH+ + + G + +Q LGH + TT IY++V ++ Sbjct: 323 ISPHGFRHTACSLMFEAGATINEVQKRLGHKDVKTTMNIYSHVTPQQ 369 >gi|154505395|ref|ZP_02042133.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149] gi|153794321|gb|EDN76741.1| hypothetical protein RUMGNA_02917 [Ruminococcus gnavus ATCC 29149] Length = 408 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 +AH LRH+F T L N +L+ IQSI+GHS ++TT +Y ++ EI Sbjct: 349 SAHHLRHTFCTRLCENESNLKVIQSIMGHSDITTTMDVYAEATQEKKQEIVAN 401 >gi|295087488|emb|CBK69011.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|271965097|ref|YP_003339293.1| phage integrase family protein [Streptosporangium roseum DSM 43021] gi|270508272|gb|ACZ86550.1| phage integrase family protein [Streptosporangium roseum DSM 43021] Length = 309 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 ++ +AH LRH+ AT+LL G D+ + +LGH+RL TT+ YT + + Sbjct: 250 LALSAHILRHTLATNLLRAGVDIVVVAELLGHARLDTTRRYTLPTHADLEDAV 302 >gi|255692131|ref|ZP_05415806.1| integrase [Bacteroides finegoldii DSM 17565] gi|260622150|gb|EEX45021.1| integrase [Bacteroides finegoldii DSM 17565] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|221213692|ref|ZP_03586666.1| phage integrase [Burkholderia multivorans CGD1] gi|221166481|gb|EED98953.1| phage integrase [Burkholderia multivorans CGD1] Length = 173 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRH+FA+ L+ G L + +LGHS TQ Y +++ Sbjct: 111 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 156 >gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16] Length = 310 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + NG + +Q+ILGH+ L T++Y N+ S + + + + P Sbjct: 247 VRCSPHTFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYVNLFSNEVQQGHAKFSP 304 >gi|167920132|ref|ZP_02507223.1| phage integrase [Burkholderia pseudomallei BCC215] Length = 382 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRH+FA+ L+ G L + +LGHS TQ Y +++ Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365 >gi|167752569|ref|ZP_02424696.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216] gi|167659638|gb|EDS03768.1| hypothetical protein ALIPUT_00823 [Alistipes putredinis DSM 17216] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|154502506|ref|ZP_02039566.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149] gi|153796902|gb|EDN79322.1| hypothetical protein RUMGNA_00319 [Ruminococcus gnavus ATCC 29149] Length = 345 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN----VNSKRMMEIYDQTHPS 59 + H++RH+ H+L G + I++ LGH+ + TTQIYT K + E + P Sbjct: 265 SPHSMRHTTGQHMLEAGVPIMVIKAFLGHASVQTTQIYTESPQATVDKHIREWNEMNFPR 324 Query: 60 ITQKDKKN 67 D+K+ Sbjct: 325 SIYIDEKD 332 >gi|148243783|ref|YP_001220023.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325113224|ref|YP_004277170.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325113258|ref|YP_004277204.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|326402547|ref|YP_004282628.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|146400346|gb|ABQ28881.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|325049408|dbj|BAJ79746.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052691|dbj|BAJ83028.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325052725|dbj|BAJ83062.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 330 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T HTLRHS A LL +G D I LGH + TTQIY + + RM E Sbjct: 254 VTPHTLRHSTAMDLLHHGVDPAVIALWLGHENVETTQIYIHADM-RMKE 301 >gi|294647494|ref|ZP_06725075.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807460|ref|ZP_06766263.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|317476756|ref|ZP_07935999.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|292637154|gb|EFF55591.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445355|gb|EFG14019.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|316906931|gb|EFV28642.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|126441280|ref|YP_001060060.1| phage integrase [Burkholderia pseudomallei 668] gi|126220773|gb|ABN84279.1| phage integrase [Burkholderia pseudomallei 668] Length = 381 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRH+FA+ L+ G L + +LGHS TQ Y +++ Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365 >gi|323344352|ref|ZP_08084577.1| integrase [Prevotella oralis ATCC 33269] gi|323094479|gb|EFZ37055.1| integrase [Prevotella oralis ATCC 33269] Length = 389 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHSF T L G + SI ++GHS +++TQIY + +++ D+ Sbjct: 332 PLTWHVGRHSFGTLTLEAGIPMESIAKMMGHSSIASTQIYAQITDQKISSDMDR 385 >gi|107022005|ref|YP_620332.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116688949|ref|YP_834572.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105892194|gb|ABF75359.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116647038|gb|ABK07679.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 381 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRH+FA+ L+ G L + +LGHS TQ Y +++ Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365 >gi|302384970|ref|YP_003820792.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195598|gb|ADL03169.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 286 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + + N GD+ + ILGH + TT+IY + +S +I +Q Sbjct: 230 VYPHSFRHRFAKNFIENCGDISMLSDILGHESIETTRIYLHRSSTEQKQIVNQ 282 >gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 409 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRH+FA+ L G D+ + + GH +ST Q Y ++ + I Sbjct: 337 KVVFHTLRHTFASWLAQAGADIHHLMELTGHKSISTMQRYAHLMPGKTRAI 387 >gi|255034748|ref|YP_003085369.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254947504|gb|ACT92204.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 412 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+H RH+FAT + L NG + S+ +LGH+ + TTQIY + ++ E Sbjct: 347 TSHVARHTFATTITLQNGVPIESVSKMLGHTNIRTTQIYAKILDLKVSEDMQA 399 >gi|167765393|ref|ZP_02437506.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC 43183] gi|167697021|gb|EDS13600.1| hypothetical protein BACSTE_03781 [Bacteroides stercoris ATCC 43183] Length = 412 Score = 67.2 bits (164), Expect = 7e-10, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RHS+AT LS G + +I LGH ++TTQIY ++ ++ E Sbjct: 348 TYHMARHSYATLCLSMGVPIETISQTLGHRSITTTQIYADITRTKINE 395 >gi|332971270|gb|EGK10233.1| TnP I resolvase [Desmospora sp. 8437] Length = 287 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+LRH F T L G + ++ I GH+ ++TT IY + + K M+E D+ Sbjct: 233 EITPHSLRHFFCTRALEAGYTIEEVRQIAGHANVNTTLIYAHPSRKSMLEKIDR 286 >gi|237729521|ref|ZP_04560002.1| gp27 [Citrobacter sp. 30_2] gi|226908127|gb|EEH94045.1| gp27 [Citrobacter sp. 30_2] Length = 123 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA+H + N G++ +Q ILGH+ + T Y + + E Sbjct: 57 HVLRHTFASHFMINCGNILVLQQILGHANIRETMRYAHFAPDHLEEAV 104 >gi|218129591|ref|ZP_03458395.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697] gi|217988321|gb|EEC54644.1| hypothetical protein BACEGG_01168 [Bacteroides eggerthii DSM 20697] Length = 407 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|319400740|gb|EFV88962.1| transposition regulatory protein tnpA [Staphylococcus epidermidis FRI909] Length = 370 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H RH+ AT + D++ +Q LGHS + TT +Y + + + E +++ Sbjct: 303 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 358 >gi|293370975|ref|ZP_06617517.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292633905|gb|EFF52452.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 409 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|242314481|ref|ZP_04813497.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106b] gi|254194535|ref|ZP_04900966.1| integrase [Burkholderia pseudomallei S13] gi|169651285|gb|EDS83978.1| integrase [Burkholderia pseudomallei S13] gi|242137720|gb|EES24122.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106b] Length = 247 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246 >gi|327183268|gb|AEA31715.1| integrase [Lactobacillus amylovorus GRL 1118] Length = 383 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H RH+ A+ L G ++ ++ LGHS ++TT IYT+V K+ E Sbjct: 326 HGFRHTHASLLFDAGVSMKDVKERLGHSDITTTMNIYTHVTKKKAKE 372 >gi|298388051|ref|ZP_06997597.1| integrase [Bacteroides sp. 1_1_14] gi|329960270|ref|ZP_08298712.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|298259151|gb|EFI02029.1| integrase [Bacteroides sp. 1_1_14] gi|328532943|gb|EGF59720.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|289549678|ref|YP_003470582.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01] gi|289179210|gb|ADC86455.1| Tn554-related, transposase A [Staphylococcus lugdunensis HKU09-01] Length = 367 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 ++ H LRH+ AT + +++ +Q LGHS + TT +Y + + + + E +++ Sbjct: 303 INVHPHLLRHTHATIFYNKSKNIKQVQERLGHSNIQTTMNLYIHNDDQLIRENWEK 358 >gi|189460321|ref|ZP_03009106.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136] gi|189433019|gb|EDV02004.1| hypothetical protein BACCOP_00958 [Bacteroides coprocola DSM 17136] gi|291515194|emb|CBK64404.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|325526292|gb|EGD03903.1| phage integrase family protein [Burkholderia sp. TJI49] Length = 381 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HTLRH+FA+ L+ G L + +LGHS TQ Y +++ Sbjct: 320 VTLHTLRHTFASKLVKAGVSLYEVSVLLGHSDPKMTQRYAHLSPND 365 >gi|307566170|ref|ZP_07628625.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345135|gb|EFN90517.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 213 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 35/66 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H RHSF T L G + SI +LGHS +++T IY V K++ E D+ + Sbjct: 135 PLTWHVARHSFGTLTLKAGIPMESIAKMLGHSSIASTHIYAQVTDKKISEYMDRLFAKQS 194 Query: 62 QKDKKN 67 K K+N Sbjct: 195 AKKKEN 200 >gi|298345180|ref|YP_003717867.1| phage family integrase/recombinase protein [Mobiluncus curtisii ATCC 43063] gi|298235241|gb|ADI66373.1| phage family integrase/recombinase protein [Mobiluncus curtisii ATCC 43063] Length = 222 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T HTLRH F TH + DL ++Q +LGH+ +STTQ Y S M + Sbjct: 166 TMHTLRHRFGTHAYAGDRDLVAVQRLLGHASVSTTQRYVEPPSDAMRRAANSA 218 >gi|325268703|ref|ZP_08135332.1| integrase [Prevotella multiformis DSM 16608] gi|324988947|gb|EGC20901.1| integrase [Prevotella multiformis DSM 16608] Length = 306 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + TAH RH+FAT + L NG + ++ +LGHS++ TT+ Y V K++ E + + Sbjct: 239 IPLTAHIGRHTFATLITLENGVPIETVSKMLGHSKIETTERYAYVTPKKVFEEFGRF 295 >gi|189465784|ref|ZP_03014569.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM 17393] gi|189434048|gb|EDV03033.1| hypothetical protein BACINT_02145 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHSR+STTQIY V ++ Sbjct: 343 FHCGRHTYATEITLSHGVPLETVSKMLGHSRISTTQIYAKVTDDKI 388 >gi|260907656|ref|ZP_05915978.1| phage integrase family protein [Brevibacterium linens BL2] Length = 265 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+F T L G DL +Q++LGH+ + TT Y ++ + +D I + Sbjct: 204 HPHALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLAPVHVKGEFDAARERIRTQ 263 >gi|303258389|ref|ZP_07344392.1| integrase/recombinase [Burkholderiales bacterium 1_1_47] gi|302858835|gb|EFL81923.1| integrase/recombinase [Burkholderiales bacterium 1_1_47] Length = 320 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T H LR +FAT L+S D+ +Q ++GH+ ++TT Y + + + Sbjct: 266 TPHDLRRTFATRLISKNVDIVEVQKLMGHASVATTGNYVRKDEENLR 312 >gi|258651475|ref|YP_003200631.1| integrase [Nakamurella multipartita DSM 44233] gi|258652720|ref|YP_003201876.1| integrase [Nakamurella multipartita DSM 44233] gi|258653844|ref|YP_003203000.1| integrase [Nakamurella multipartita DSM 44233] gi|258554700|gb|ACV77642.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258555945|gb|ACV78887.1| integrase family protein [Nakamurella multipartita DSM 44233] gi|258557069|gb|ACV80011.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 334 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ T L +G L +IQ+ GH + TT+IY ++ +++ Y + Sbjct: 269 ATCHELRHTCFTRLRESGMALEAIQAQAGHVSIETTKIYLHLAPDWLVDEYRKA 322 >gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402] gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402] Length = 388 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H RH+ A+ L +G L+ +Q+ LGHS + TT IYT++ ++ D+ Sbjct: 327 KIHVHGFRHTHASLLFESGATLKEVQTRLGHSDIKTTMDIYTHITQSSREKLADKF 382 >gi|56414705|ref|YP_151780.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363632|ref|YP_002143269.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128962|gb|AAV78468.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095109|emb|CAR60655.1| probable bacteriophage integrase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 252 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ ++Q IL H + T Y ++ + Sbjct: 194 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHLAPDHL 237 >gi|41409062|ref|NP_961898.1| hypothetical protein MAP2964c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397421|gb|AAS05281.1| hypothetical protein MAP_2964c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 372 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS TH G R +Q +GH+ STT IYT+V+++ ++ + Sbjct: 308 HCLRHSAVTHWTEFGYPARFVQEQVGHAHASTTSIYTHVSNEYRNKLLKAS 358 >gi|303242647|ref|ZP_07329121.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589786|gb|EFL59560.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 340 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +AH +RH+ A L+++G DL I+ +LGHS + TT+IY ++K + + Sbjct: 260 SAHKMRHTMAMELVTSGVDLMYIRDLLGHSSVVTTEIYARTDAKLKRKAIEAA 312 >gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264] gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264] Length = 356 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIY 53 LRH T L+ G +++++Q LGH+ + TT ++Y +V K E+ Sbjct: 301 ALRHMHTTLLIEKGVNIKAVQERLGHADIKTTLEVYAHVTEKMKKEVI 348 >gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424] gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 294 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H LRHS ATH + G +L +Q LGHS LS T Y + Sbjct: 239 NVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLSITSRYLH 280 >gi|53711443|ref|YP_097435.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|154490858|ref|ZP_02030799.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC 43184] gi|167762758|ref|ZP_02434885.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC 43183] gi|189461170|ref|ZP_03009955.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136] gi|189464486|ref|ZP_03013271.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM 17393] gi|212695418|ref|ZP_03303546.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855] gi|218131431|ref|ZP_03460235.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697] gi|237707983|ref|ZP_04538464.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237718310|ref|ZP_04548791.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|262406714|ref|ZP_06083263.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644489|ref|ZP_06722249.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808560|ref|ZP_06767306.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298377021|ref|ZP_06986975.1| integrase [Bacteroides sp. 3_1_19] gi|298483541|ref|ZP_07001717.1| integrase [Bacteroides sp. D22] gi|301308604|ref|ZP_07214557.1| integrase [Bacteroides sp. 20_3] gi|319644409|ref|ZP_07998863.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|329960021|ref|ZP_08298517.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|46242813|gb|AAS83518.1| Int [Bacteroides fragilis] gi|52214308|dbj|BAD46901.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|154088606|gb|EDN87650.1| hypothetical protein PARMER_00775 [Parabacteroides merdae ATCC 43184] gi|167699098|gb|EDS15677.1| hypothetical protein BACSTE_01116 [Bacteroides stercoris ATCC 43183] gi|189432084|gb|EDV01069.1| hypothetical protein BACCOP_01817 [Bacteroides coprocola DSM 17136] gi|189438276|gb|EDV07261.1| hypothetical protein BACINT_00828 [Bacteroides intestinalis DSM 17393] gi|212662053|gb|EEB22627.1| hypothetical protein BACDOR_04967 [Bacteroides dorei DSM 17855] gi|217986363|gb|EEC52700.1| hypothetical protein BACEGG_03049 [Bacteroides eggerthii DSM 20697] gi|229452494|gb|EEO58285.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229457969|gb|EEO63690.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|262355417|gb|EEZ04508.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292640180|gb|EFF58438.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444241|gb|EFG12962.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298266005|gb|EFI07664.1| integrase [Bacteroides sp. 3_1_19] gi|298270298|gb|EFI11883.1| integrase [Bacteroides sp. D22] gi|300833398|gb|EFK64015.1| integrase [Bacteroides sp. 20_3] gi|313158580|gb|EFR57974.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] gi|317384129|gb|EFV65104.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|328533155|gb|EGF59924.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 411 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|120554184|ref|YP_958535.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120324033|gb|ABM18348.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 246 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHSFA HLL +G L+ + +LGH + + ++YTNV Sbjct: 188 FKIGCHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVESPEVYTNV 231 >gi|270269254|gb|ACZ66246.1| Tn554-related, transposase A [Staphylococcus aureus] Length = 370 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H RH+ AT + D++ +Q LGHS + TT +Y + + + E +++ Sbjct: 303 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 358 >gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A] gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A] Length = 200 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 142 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 199 >gi|255693813|ref|ZP_05417488.1| integrase [Bacteroides finegoldii DSM 17565] gi|260620383|gb|EEX43254.1| integrase [Bacteroides finegoldii DSM 17565] Length = 406 Score = 67.2 bits (164), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H RHSF T +LS+G + SI ++GH+ +++TQ+Y V +++ DQ Sbjct: 335 NLSYHMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388 >gi|330995439|ref|ZP_08319345.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329575584|gb|EGG57119.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 411 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|295086881|emb|CBK68404.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 411 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|260576688|ref|ZP_05844674.1| integrase family protein [Rhodobacter sp. SW2] gi|259021055|gb|EEW24365.1| integrase family protein [Rhodobacter sp. SW2] Length = 430 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ + D Sbjct: 356 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDA 405 >gi|237726547|ref|ZP_04557028.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|270295238|ref|ZP_06201439.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|282877673|ref|ZP_06286488.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|294776622|ref|ZP_06742091.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|229435073|gb|EEO45150.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|270274485|gb|EFA20346.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|281300245|gb|EFA92599.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|294449537|gb|EFG18068.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 411 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMKN 395 >gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] Length = 407 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|189462248|ref|ZP_03011033.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136] gi|189431050|gb|EDV00035.1| hypothetical protein BACCOP_02934 [Bacteroides coprocola DSM 17136] Length = 406 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H RHSF T +LS+G + SI ++GH+ +++TQ+Y V +++ DQ Sbjct: 335 NLSYHMARHSFGTLMLSSGIPIESIAKMMGHTNINSTQVYAQVTDRKISGDMDQ 388 >gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 430 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S ++ + + Sbjct: 353 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKN----VQR 408 Query: 63 KDKK 66 K KK Sbjct: 409 KRKK 412 >gi|253570201|ref|ZP_04847610.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6] gi|251840582|gb|EES68664.1| LOW QUALITY PROTEIN: transposase [Bacteroides sp. 1_1_6] Length = 110 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMMEI 52 + H LRH+FAT + LS+G + ++ +LGH+ + TTQIY + + + E+ Sbjct: 34 LPILFHGLRHTFATTITLSHGIPIETVSKMLGHTSIKTTQIYAKILDTKVMDDMAALKEM 93 Query: 53 YDQ 55 Y + Sbjct: 94 YAR 96 >gi|255012146|ref|ZP_05284272.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 400 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 331 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 384 >gi|167847818|ref|ZP_02473326.1| putative bacteriophage integrase [Burkholderia pseudomallei B7210] Length = 235 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234 >gi|38637701|ref|NP_942675.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527039|gb|AAP85789.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 333 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 +T AH RH+ A+ +L +G LR I +LGH TT IYT V+ K + Sbjct: 274 TTGAHQFRHALASQMLRHGASLREIGELLGHHHPQTTSIYTKVDIKALR 322 >gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666] gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666] Length = 557 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H +RH+ A+H L G +L +++ L HS ++TT IY + + + D Sbjct: 500 ATPHWMRHTHASHALQGGAELTAVRDNLRHSSIATTSIYLHSDEVKRARQMDAA 553 >gi|313149988|ref|ZP_07812181.1| integrase [Bacteroides fragilis 3_1_12] gi|313138755|gb|EFR56115.1| integrase [Bacteroides fragilis 3_1_12] Length = 396 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 327 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 380 >gi|317497960|ref|ZP_07956267.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894759|gb|EFV16934.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 361 Score = 66.8 bits (163), Expect = 8e-10, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+F ++L+ +G D+ ++ I+GH LSTTQ YT++++ + + + Sbjct: 296 FHDLRHTFCSNLVQSGMDVSVVRMIMGHEHLSTTQKYTHLSNPYIEDSLSKY 347 >gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 354 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ A++LL G DLR++ ILGHS + Q YT++ ++ D+ Sbjct: 299 HDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQRYTHLLDDHKLKAIDK 348 >gi|299148773|ref|ZP_07041835.1| integrase [Bacteroides sp. 3_1_23] gi|301311632|ref|ZP_07217558.1| integrase [Bacteroides sp. 20_3] gi|15072714|emb|CAC47921.1| integrase protein [Bacteroides thetaiotaomicron] gi|298513534|gb|EFI37421.1| integrase [Bacteroides sp. 3_1_23] gi|300830373|gb|EFK61017.1| integrase [Bacteroides sp. 20_3] Length = 411 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|294617320|ref|ZP_06696960.1| transposase A [Enterococcus faecium E1679] gi|291596429|gb|EFF27682.1| transposase A [Enterococcus faecium E1679] Length = 361 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356 Query: 60 ITQKD 64 K Sbjct: 357 KEHKK 361 >gi|265755233|ref|ZP_06090003.1| integrase [Bacteroides sp. 3_1_33FAA] gi|263234375|gb|EEZ19965.1| integrase [Bacteroides sp. 3_1_33FAA] Length = 411 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|237711307|ref|ZP_04541788.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|325299619|ref|YP_004259536.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|229454002|gb|EEO59723.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|324319172|gb|ADY37063.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 411 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 394 >gi|86157887|ref|YP_464672.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774398|gb|ABC81235.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 387 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+F T L G R+IQ++ GH + TT Y +V+++ Sbjct: 314 HKLRHTFCTRLAMAGVPPRTIQALAGHVSIETTMRYMHVSAR 355 >gi|62815912|emb|CAH17565.1| Transposase A [Staphylococcus aureus] Length = 361 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356 Query: 60 ITQKD 64 K Sbjct: 357 KEHKK 361 >gi|224807|prf||1202257C gene tnpA Length = 361 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356 Query: 60 ITQKD 64 K Sbjct: 357 KEHKK 361 >gi|291515411|emb|CBK64621.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 367 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + LS G + ++ +LGH+ + TTQIY + ++++ Sbjct: 300 KLTFHLARHTFATTITLSQGMPIETVSRLLGHTNIKTTQIYAKITNEKI 348 >gi|210612387|ref|ZP_03289298.1| hypothetical protein CLONEX_01499 [Clostridium nexile DSM 1787] gi|210151599|gb|EEA82606.1| hypothetical protein CLONEX_01499 [Clostridium nexile DSM 1787] Length = 402 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+F T G ++++IQ+++GH+ + T YT+ + +++ +Q Sbjct: 345 KITPHVCRHTFCTRQWQRGLNVKTIQALMGHASIEVTMDTYTHATYQDIVKEVNQA 400 >gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] Length = 379 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 + H LRH+FAT + G +++Q ILGHS + T +Y ++ + + D Sbjct: 316 SMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGITMNLYVHITEEEKQKEID 367 >gi|160885910|ref|ZP_02066913.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483] gi|156108723|gb|EDO10468.1| hypothetical protein BACOVA_03915 [Bacteroides ovatus ATCC 8483] Length = 318 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H LRH+FAT L+ N D++++ +ILGHS + TT IY + + + + + Sbjct: 261 HGLRHTFATTLIENKIDVKTVSTILGHSDVGTTLNIYVHPSEEAKTDAVN 310 >gi|57867419|ref|YP_189034.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A] gi|282919766|ref|ZP_06327498.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus C427] gi|283771081|ref|ZP_06343972.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus H19] gi|293367758|ref|ZP_06614407.1| transposase [Staphylococcus epidermidis M23864:W2(grey)] gi|57638077|gb|AAW54865.1| Tn554-related, transposase A [Staphylococcus epidermidis RP62A] gi|282316404|gb|EFB46781.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus C427] gi|283459675|gb|EFC06766.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus H19] gi|283471202|emb|CAQ50413.1| transposition regulatory protein TnpA [Staphylococcus aureus subsp. aureus ST398] gi|291318097|gb|EFE58494.1| transposase [Staphylococcus epidermidis M23864:W2(grey)] gi|323464882|gb|ADX77035.1| Tn554-related, transposase A [Staphylococcus pseudintermedius ED99] gi|329734754|gb|EGG71060.1| phage integrase, N-terminal SAM domain protein [Staphylococcus epidermidis VCU045] gi|329734787|gb|EGG71092.1| phage integrase, N-terminal SAM domain protein [Staphylococcus epidermidis VCU028] Length = 370 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H RH+ AT + D++ +Q LGHS + TT +Y + + + E +++ Sbjct: 303 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 358 >gi|27468531|ref|NP_765168.1| transposition regulatory protein tnpA [Staphylococcus epidermidis ATCC 12228] gi|27316078|gb|AAO05212.1|AE016749_158 transposition regulatory protein tnpA [Staphylococcus epidermidis ATCC 12228] Length = 383 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H RH+ AT + D++ +Q LGHS + TT +Y + + + E +++ Sbjct: 316 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 371 >gi|116622416|ref|YP_824572.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225578|gb|ABJ84287.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 332 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ A LL G D I LGH + TTQIY + + E +T+P Sbjct: 256 VSPHVLRHAAAMELLQGGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311 >gi|166033434|ref|ZP_02236263.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC 27755] gi|166026619|gb|EDR45376.1| hypothetical protein DORFOR_03160 [Dorea formicigenerans ATCC 27755] Length = 403 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV---NSKRMMEIYD-Q 55 T H LRH++ T+LL G D +++Q + GH TT IY V + + + + Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKVKYNKPEELFGVVNGA 396 Query: 56 THPSITQ 62 H +IT+ Sbjct: 397 FHQAITE 403 >gi|325269967|ref|ZP_08136576.1| integrase [Prevotella multiformis DSM 16608] gi|324987690|gb|EGC19664.1| integrase [Prevotella multiformis DSM 16608] Length = 411 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|256840951|ref|ZP_05546459.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256738223|gb|EEU51549.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 419 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 350 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 402 >gi|253734957|ref|ZP_04869122.1| integrase [Staphylococcus aureus subsp. aureus TCH130] gi|253727139|gb|EES95868.1| integrase [Staphylococcus aureus subsp. aureus TCH130] Length = 392 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H RH+ AT + D++ +Q LGHS + TT +Y + + + E +++ Sbjct: 325 INVHPHLFRHTHATVFYNETKDIKQVQERLGHSNIQTTINLYVHPTEEDIREDWNK 380 >gi|255692358|ref|ZP_05416033.1| integrase [Bacteroides finegoldii DSM 17565] gi|260621985|gb|EEX44856.1| integrase [Bacteroides finegoldii DSM 17565] Length = 291 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 221 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 268 >gi|48477839|ref|YP_023545.1| site-specific integrase/recombinase [Picrophilus torridus DSM 9790] gi|48430487|gb|AAT43352.1| hypothetical site-specific integrase/recombinase [Picrophilus torridus DSM 9790] Length = 119 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 28/42 (66%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 AH RH++A +LL +G D+ +I+ +LGH L TTQIYT Sbjct: 38 FKIHAHKFRHTYAKNLLRSGVDIETIRIMLGHEDLGTTQIYT 79 >gi|15923046|ref|NP_370580.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|15924649|ref|NP_372183.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|15925759|ref|NP_373292.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15926488|ref|NP_374021.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15927238|ref|NP_374771.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|15927727|ref|NP_375260.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|15928181|ref|NP_375714.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|49482302|ref|YP_039526.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49483903|ref|YP_041127.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57865838|ref|YP_190048.1| transposase A [Staphylococcus epidermidis RP62A] gi|57867121|ref|YP_188798.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|57867260|ref|YP_188919.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|148266488|ref|YP_001245431.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|148268140|ref|YP_001247083.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|150392521|ref|YP_001315196.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|150394207|ref|YP_001316882.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|156978386|ref|YP_001440645.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|156979977|ref|YP_001442236.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|221141569|ref|ZP_03566062.1| transposase A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|254663984|ref|ZP_05143456.1| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|255006445|ref|ZP_05145046.2| transposase A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257428442|ref|ZP_05604840.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322] gi|257431611|ref|ZP_05607979.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397] gi|257793727|ref|ZP_05642706.1| transposase [Staphylococcus aureus A9781] gi|258411264|ref|ZP_05681541.1| transposase [Staphylococcus aureus A9763] gi|258422476|ref|ZP_05685387.1| transposase for transposon [Staphylococcus aureus A9719] gi|258447337|ref|ZP_05695483.1| tnpA protein [Staphylococcus aureus A6300] gi|258448322|ref|ZP_05696447.1| tnpA protein [Staphylococcus aureus A6224] gi|258451924|ref|ZP_05699941.1| tnpA protein [Staphylococcus aureus A5948] gi|258454551|ref|ZP_05702517.1| tnpA protein [Staphylococcus aureus A5937] gi|282929818|ref|ZP_06336961.1| transposase A [Staphylococcus aureus A10102] gi|293503535|ref|ZP_06667382.1| transposase A [Staphylococcus aureus subsp. aureus 58-424] gi|295407732|ref|ZP_06817517.1| transposase A [Staphylococcus aureus A8819] gi|295429348|ref|ZP_06821969.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297246795|ref|ZP_06930604.1| transposase A [Staphylococcus aureus A8796] gi|304378957|ref|ZP_07361719.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60415970|sp|P0A050|TNPA_STAAM RecName: Full=Transposase A from transposon Tn554 gi|60415971|sp|P0A051|TNPA_STAAN RecName: Full=Transposase A from transposon Tn554 gi|60415972|sp|P0A052|TNPA_STAAU RecName: Full=Transposase A from transposon Tn554 gi|581277|emb|CAA26960.1| tnpA protein [Staphylococcus aureus] gi|5360831|dbj|BAA82201.1| transposaseA [Staphylococcus aureus] gi|13699971|dbj|BAB41270.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13700702|dbj|BAB41999.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13701456|dbj|BAB42750.1| transposase A for Tn554 [Staphylococcus aureus subsp. aureus N315] gi|13701947|dbj|BAB43239.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|13702552|dbj|BAB43693.1| transposition regulatory protein tnpA [Staphylococcus aureus subsp. aureus N315] gi|14021043|dbj|BAB47667.1| transposase A(Tn554) [Staphylococcus aureus] gi|14245823|dbj|BAB56218.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|14247431|dbj|BAB57821.1| transposase A [Staphylococcus aureus subsp. aureus Mu50] gi|27529892|dbj|BAC53829.1| transposase A(Tn554) [Staphylococcus aureus] gi|28465874|dbj|BAC57491.1| transposaseA [Staphylococcus aureus] gi|49240431|emb|CAG39082.1| transposase A 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|49242032|emb|CAG40731.1| transposase A 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|57636496|gb|AAW53284.1| transposase A [Staphylococcus epidermidis RP62A] gi|57637779|gb|AAW54567.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|57637918|gb|AAW54706.1| Tn554, transposase A [Staphylococcus epidermidis RP62A] gi|70568188|dbj|BAE06285.1| transposase A for Tn554 [Staphylococcus aureus] gi|147739557|gb|ABQ47855.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|147741209|gb|ABQ49507.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH9] gi|149944973|gb|ABR50909.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|149946659|gb|ABR52595.1| phage integrase family protein [Staphylococcus aureus subsp. aureus JH1] gi|156720521|dbj|BAF76938.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|156722112|dbj|BAF78529.1| transposase A [Staphylococcus aureus subsp. aureus Mu3] gi|195963185|emb|CAQ43010.1| transposase A [Staphylococcus aureus] gi|221327665|gb|ACM17509.1| transposase A [Staphylococcus aureus] gi|238773853|dbj|BAH66416.1| transposaseA [Staphylococcus aureus] gi|257275283|gb|EEV06770.1| transposase A, tpnA [Staphylococcus aureus subsp. aureus 65-1322] gi|257277665|gb|EEV08349.1| tnpA protein [Staphylococcus aureus subsp. aureus 68-397] gi|257787699|gb|EEV26039.1| transposase [Staphylococcus aureus A9781] gi|257839993|gb|EEV64460.1| transposase [Staphylococcus aureus A9763] gi|257841542|gb|EEV65980.1| transposase for transposon [Staphylococcus aureus A9719] gi|257853863|gb|EEV76820.1| tnpA protein [Staphylococcus aureus A6300] gi|257858417|gb|EEV81295.1| tnpA protein [Staphylococcus aureus A6224] gi|257860407|gb|EEV83238.1| tnpA protein [Staphylococcus aureus A5948] gi|257863278|gb|EEV86040.1| tnpA protein [Staphylococcus aureus A5937] gi|269939560|emb|CBI47921.1| transposase A 1 [Staphylococcus aureus subsp. aureus TW20] gi|269941142|emb|CBI49529.1| transposase C 2 [Staphylococcus aureus subsp. aureus TW20] gi|282167045|gb|ADA81061.1| Transposase A from transposon Tn554 [Staphylococcus aureus] gi|282589025|gb|EFB94130.1| transposase A [Staphylococcus aureus A10102] gi|285815781|gb|ADC36268.1| Transposase A from transposon Tn554 [Staphylococcus aureus 04-02981] gi|285817342|gb|ADC37829.1| Transposase A from transposon Tn554 [Staphylococcus aureus 04-02981] gi|288551790|gb|ADC53386.1| transposase A [Staphylococcus aureus] gi|291095201|gb|EFE25466.1| transposase A [Staphylococcus aureus subsp. aureus 58-424] gi|294967408|gb|EFG43452.1| transposase A [Staphylococcus aureus A8819] gi|295126726|gb|EFG56371.1| transposase A transposon Tn554 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297176346|gb|EFH35621.1| transposase A [Staphylococcus aureus A8796] gi|299758064|dbj|BAJ10039.1| transposase A [Staphylococcus aureus] gi|302750706|gb|ADL64883.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|302751486|gb|ADL65663.1| phage integrase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342463|gb|EFM08340.1| transposase A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312828683|emb|CBX33525.1| phage integrase, N-terminal SAM-like domain protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128350|gb|EFT84362.1| transposase A [Staphylococcus aureus subsp. aureus CGS03] gi|315195563|gb|EFU25950.1| transposase A [Staphylococcus aureus subsp. aureus CGS00] gi|329314333|gb|AEB88746.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp. aureus T0131] gi|329727407|gb|EGG63863.1| phage integrase, N-terminal SAM domain protein [Staphylococcus aureus subsp. aureus 21172] Length = 361 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356 Query: 60 ITQKD 64 K Sbjct: 357 KEHKK 361 >gi|323464881|gb|ADX77034.1| Tn554-related, transposase B [Staphylococcus pseudintermedius ED99] Length = 687 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 543 >gi|319400741|gb|EFV88963.1| phage integrase family protein [Staphylococcus epidermidis FRI909] Length = 675 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531 >gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 213 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++AT L+ G DL +I +L HS ++TTQ+Y +V + + +Q Sbjct: 157 ITFHCFRHTYATLQLAAGTDLYTISKMLTHSNVATTQVYADVVNDLKRKASEQ 209 >gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 301 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T HT RHSF ++++ G + IQ GHS L + Q+Y ++ ++ I + Sbjct: 244 FDITPHTFRHSFISNMIREGASIAEIQEYTGHSDLGSLQVYFHMGTQHKRNILSK 298 >gi|27468530|ref|NP_765167.1| transposition regulatory protein tnpB [Staphylococcus epidermidis ATCC 12228] gi|282919765|ref|ZP_06327497.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp. aureus C427] gi|27316077|gb|AAO05211.1|AE016749_157 transposition regulatory protein tnpB [Staphylococcus epidermidis ATCC 12228] gi|282316403|gb|EFB46780.1| transposition regulatory protein tnpB [Staphylococcus aureus subsp. aureus C427] Length = 675 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531 >gi|331086494|ref|ZP_08335573.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410552|gb|EGG89980.1| hypothetical protein HMPREF0987_01876 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 409 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 + + H LRH+FAT N +L+ IQ I+GH ++TT IY + Sbjct: 347 NFSCHNLRHTFATRYCENETNLKVIQEIMGHKDIATTMEIYAEATKE 393 >gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 368 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 364 >gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33] gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33] gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33] gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33] Length = 385 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RHSFA + L+ G D+ S+ +LGHS L TT+IY ++ +R + Sbjct: 324 VTFHAGRHSFAVNQLARGLDIYSLSRLLGHSELKTTEIYADILDQRRRDAMRSF 377 >gi|257413868|ref|ZP_04744502.2| putative phage integrase [Roseburia intestinalis L1-82] gi|257202050|gb|EEV00335.1| putative phage integrase [Roseburia intestinalis L1-82] Length = 452 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 392 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 443 >gi|256842038|ref|ZP_05547543.1| integrase [Parabacteroides sp. D13] gi|256736354|gb|EEU49683.1| integrase [Parabacteroides sp. D13] Length = 310 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T++T+RHSFAT L + I +LGH+ + TTQIY + +R+ + Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294 >gi|229078263|ref|ZP_04210828.1| Transposition regulatory protein TnpB [Bacillus cereus Rock4-2] gi|228705063|gb|EEL57484.1| Transposition regulatory protein TnpB [Bacillus cereus Rock4-2] Length = 704 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A +L+ G D+ ++Q +L H+ T Y + + ++ Sbjct: 508 HQFRHTYAVKMLNGGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFE 556 >gi|227903645|ref|ZP_04021450.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796] gi|227868532|gb|EEJ75953.1| bacteriophage integrase [Lactobacillus acidophilus ATCC 4796] Length = 385 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H RH+ A+ L G + +++ LGH+ ++TT IYT+V + + ++ Sbjct: 327 HGFRHTHASLLFEAGASMNEVKARLGHADINTTMNIYTHVTDDQKKDTANK 377 >gi|299536693|ref|ZP_07050004.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis ZC1] gi|298727873|gb|EFI68437.1| transposition regulatory protein TnpA [Lysinibacillus fusiformis ZC1] Length = 373 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 ++ H RH+ AT D++ +Q LGHS++ TT +Y + +++ + E +++ Sbjct: 307 INLHPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSNEDIREDWNKA 363 >gi|255016381|ref|ZP_05288507.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 387 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 318 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 371 >gi|189463527|ref|ZP_03012312.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM 17136] gi|189429764|gb|EDU98748.1| hypothetical protein BACCOP_04246 [Bacteroides coprocola DSM 17136] Length = 102 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV-------NSKRMME 51 + + H RH+FAT LS G L ++Q +LGH + +TQ+Y + ++ RM E Sbjct: 35 VRVSPHVGRHTFATLALSKGMPLETLQKVLGHKTIISTQVYAELINPKIGEDTDRMRE 92 >gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 284 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 27/48 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + H LRHS ATHLL G L ++ LGH L TQIY V + ++ Sbjct: 235 ISLHYLRHSIATHLLQGGMSLEYVRDFLGHRHLEATQIYAKVGAHQLA 282 >gi|206480014|ref|YP_002235525.1| putative integrase [Burkholderia cenocepacia J2315] gi|195945170|emb|CAR57801.1| putative integrase [Burkholderia cenocepacia J2315] Length = 604 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T+AH LRH+F T + G + +Q ILGH+ L+TT IY +R++E Sbjct: 555 KTSAHALRHTFGTDATARGVPIDVVQQILGHASLATTSIYVKAQQQRVLE 604 >gi|94497015|ref|ZP_01303588.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94498362|ref|ZP_01304921.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94422242|gb|EAT07284.1| integrase/recombinase [Sphingomonas sp. SKA58] gi|94423387|gb|EAT08415.1| integrase/recombinase [Sphingomonas sp. SKA58] Length = 334 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N + + +Q Sbjct: 256 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 308 >gi|312129828|ref|YP_003997168.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906374|gb|ADQ16815.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 405 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + + H RH+FAT+ L+NG + + +L HS + TQIY V S+ + + D Sbjct: 348 FTLSFHLSRHTFATNALNNGMRIEYVSKLLDHSDIGITQIYAKVISEELDKAVDMY 403 >gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 412 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+FAT + L NG + ++ +LGH+ L TTQIY+ + K++ Sbjct: 350 KLTFHIARHTFATTITLENGVPMETVSGMLGHASLRTTQIYSKIKKKKV 398 >gi|293368539|ref|ZP_06615147.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636336|gb|EFF54820.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 410 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+ AT LLSNG + ++ +LGH+ + TTQIY + ++++ + Sbjct: 339 VRLTYHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITAQKISRDMEA 394 >gi|189462529|ref|ZP_03011314.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136] gi|189430690|gb|EDU99674.1| hypothetical protein BACCOP_03218 [Bacteroides coprocola DSM 17136] Length = 411 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 340 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 388 >gi|186474498|ref|YP_001863469.1| integrase family protein [Burkholderia phymatum STM815] gi|184198457|gb|ACC76419.1| integrase family protein [Burkholderia phymatum STM815] Length = 418 Score = 66.8 bits (163), Expect = 9e-10, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS A+ +LSNG L+ I +L H L+TT IY+ ++ R++ I Sbjct: 362 PHLLRHSLASRMLSNGASLKDIADVLRHRSLNTTMIYSKIDFNRLIAI 409 >gi|332878533|ref|ZP_08446254.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683628|gb|EGJ56504.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 389 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTN 43 + T H RH+FAT + L+ G + ++ +LGH+ + TTQIY Sbjct: 341 NITFHLARHTFATTMTLAKGVPIETVSKMLGHTNIQTTQIYAR 383 >gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 333 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 277 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 329 >gi|325508725|gb|ADZ20361.1| Integrase XerD family protein [Clostridium acetobutylicum EA 2018] Length = 145 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+ AT LL G DL+ IQ LGH ++TT IY++VN ++ Sbjct: 84 NVRFHDLRHTNATLLLQQGTDLKVIQERLGHKDIATTANIYSHVNKSMQKAATEK 138 >gi|317505162|ref|ZP_07963099.1| integrase [Prevotella salivae DSM 15606] gi|315663722|gb|EFV03452.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAAVSSERIHRDMQ 392 >gi|296448773|ref|ZP_06890625.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296253710|gb|EFH00885.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 316 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 H LRH+ AT L+ G+L + Q L H R++TT Y +V + ++ P T Sbjct: 232 HDLRHTAATRLVRATGNLAAAQKALRHRRITTTMRYAHVTEDDLRAALNKAAPVAT 287 >gi|229065157|ref|ZP_04200448.1| Transposition regulatory protein TnpA [Bacillus cereus AH603] gi|228716123|gb|EEL67845.1| Transposition regulatory protein TnpA [Bacillus cereus AH603] Length = 356 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 ++ H RH+ AT D++ +Q LGHS++ TT +Y + + + + E +++ Sbjct: 290 INLHPHLFRHTHATIYYQKTKDIKQVQERLGHSQIQTTMNLYLHPSDEDIREDWNKA 346 >gi|225374562|ref|ZP_03751783.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM 16841] gi|225213622|gb|EEG95976.1| hypothetical protein ROSEINA2194_00177 [Roseburia inulinivorans DSM 16841] gi|291524369|emb|CBK89956.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 403 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 T H LRH++ T+LL G D +++Q + GH TT IY V Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381 >gi|302064330|emb|CBL51506.1| transposase A [Staphylococcus aureus] Length = 361 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 297 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 356 Query: 60 ITQKD 64 K Sbjct: 357 KEHKK 361 >gi|238751815|ref|ZP_04613302.1| Integrase [Yersinia rohdei ATCC 43380] gi|238709944|gb|EEQ02175.1| Integrase [Yersinia rohdei ATCC 43380] Length = 86 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 27/44 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ +Q ILGHS + T Y + + + Sbjct: 18 HVLRHTFAAHFMMSGGNILVLQRILGHSDIQMTMRYAHFAPEHL 61 >gi|237711322|ref|ZP_04541803.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454017|gb|EEO59738.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 406 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|150006960|ref|YP_001301703.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298377388|ref|ZP_06987341.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19] gi|149935384|gb|ABR42081.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298265802|gb|EFI07462.1| tyrosine site-specific recombinase [Bacteroides sp. 3_1_19] Length = 310 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T++T+RHSFAT L + I +LGH+ + TTQIY + +R+ + Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294 >gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEI 52 H LRHS AT LL+ G + +Q +LGHS ++ T IY++V E+ Sbjct: 320 FHDLRHSAATILLAKGVHPKVVQELLGHSSIAMTMNIYSHVMPSMRKEV 368 >gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 397 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNS 46 H LRHS A+ L +NG L+ IQ LGHS +STT IYT++N Sbjct: 338 FHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTHLNF 380 >gi|255016017|ref|ZP_05288143.1| integrase [Bacteroides sp. 2_1_7] Length = 310 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T++T+RHSFAT L + I +LGH+ + TTQIY + +R+ + Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294 >gi|210630405|ref|ZP_03296440.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279] gi|210160487|gb|EEA91458.1| hypothetical protein COLSTE_00324 [Collinsella stercoris DSM 13279] Length = 153 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 HT R + ATH + G + +Q +LGHS++ TT Y VN + +++ Sbjct: 98 VHPHTFRRTLATHAIDKGMPIEQVQKLLGHSKIETTMHYAMVNQSNVKASHEKY 151 >gi|58577494|emb|CAG29647.1| transposase A [Staphylococcus lentus] Length = 361 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 ++ TAH LRH+ AT L+ +G D +Q LGH+ + TT Y +++ + M Y + Sbjct: 299 ITFTAHILRHTHATELIRSGWDGAYVQKRLGHAHVQTTLDTYVHLSDQDMKNEYKKY 355 >gi|53712631|ref|YP_098623.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215496|dbj|BAD48089.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 409 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT LS G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLSKGVPIETVSKMLGHTNIETTQIYARITNSKI 386 >gi|167761899|ref|ZP_02434026.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC 43183] gi|167700269|gb|EDS16848.1| hypothetical protein BACSTE_00242 [Bacteroides stercoris ATCC 43183] Length = 333 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 276 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 329 >gi|60681325|ref|YP_211469.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492759|emb|CAH07532.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 410 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RHS+AT + LSN + ++ +LGH + TTQIY + ++++ ++ Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394 >gi|326388779|ref|ZP_08210366.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370] gi|326206737|gb|EGD57567.1| integrase/recombinase [Novosphingobium nitrogenifigens DSM 19370] Length = 324 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N + + +Q Sbjct: 246 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 298 >gi|301308789|ref|ZP_07214741.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833313|gb|EFK63931.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T++T+RHSFAT L + I +LGH+ + TTQIY + +R+ + Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294 >gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 349 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH++AT L G ++ Q +LGH+ +STT IYT++ + + + Q Sbjct: 287 TWHMLRHTYATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQDEHIAQAARQ 339 >gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSF++ L+++G + + +LGH+++ TT Y ++ ++ +++ + Sbjct: 330 HDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRYAHLANQTLLDAVN 378 >gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] Length = 303 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPS 59 + HT RH FA + NG D+ ++ +LGH LSTTQ Y E+ + PS Sbjct: 241 SPHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQSLEDF--ELIKRAMPS 294 >gi|253580756|ref|ZP_04858020.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848127|gb|EES76093.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 345 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 285 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 336 >gi|261366421|ref|ZP_05979304.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] gi|282571682|gb|EFB77217.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] Length = 403 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 T H LRH++ T+LL G D +++Q + GH TT IY V Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381 >gi|153807337|ref|ZP_01960005.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185] gi|149129699|gb|EDM20911.1| hypothetical protein BACCAC_01615 [Bacteroides caccae ATCC 43185] Length = 410 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H RH+ AT LLSNG + ++ +LGH+ + TTQIY + S+++ + + Sbjct: 342 STHVARHTNATTVLLSNGVPIETVSRLLGHTNIKTTQIYAKITSQKISQDMEA 394 >gi|268608965|ref|ZP_06142692.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 384 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H RH+F T L G D+ + + GH+ + TT IYT+++S+ + ++ Sbjct: 314 TPHWCRHTFITMLYLAGIDVLTAKEQAGHNDIRTTMSIYTHLDSRYKQKSMNK 366 >gi|258453348|ref|ZP_05701333.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937] gi|257864556|gb|EEV87299.1| transposition regulatory protein tnpB [Staphylococcus aureus A5937] Length = 687 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 543 >gi|325298292|ref|YP_004258209.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|330995849|ref|ZP_08319745.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|324317845|gb|ADY35736.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|329574380|gb|EGG55951.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 406 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|317481276|ref|ZP_07940347.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902609|gb|EFV24492.1| phage integrase [Bacteroides sp. 4_1_36] Length = 411 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 394 >gi|313157316|gb|EFR56741.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 409 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT + L+ G L ++ +LGH R++TTQIY + + ++ Sbjct: 341 FNPTMHMARHTFATTVTLAQGVPLETVSKMLGHKRITTTQIYAQITNDKI 390 >gi|289549679|ref|YP_003470583.1| Tn554-related, transposase B [Staphylococcus lugdunensis HKU09-01] gi|289179211|gb|ADC86456.1| Tn554-related, transposase B [Staphylococcus lugdunensis HKU09-01] Length = 690 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L H+ T Y + + ++ Sbjct: 498 HQFRHTYAVKLLNGGVDILTIQELLAHASPEMTLRYAKLLDDTKRKAFE 546 >gi|238897940|ref|YP_002923620.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465698|gb|ACQ67472.1| integrase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 336 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 31/48 (64%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S T H LR S+A+ LL NG D+ +++ LGH+ + TTQ Y + KR+ Sbjct: 261 SFTPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 308 >gi|256818734|ref|YP_003135801.1| integrase family protein [Cyanothece sp. PCC 8802] gi|256592474|gb|ACV03344.1| integrase family protein [Cyanothece sp. PCC 8802] Length = 373 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 +AH+LRH+ T L G LR +Q +LGHS TT +Y +++ + Sbjct: 313 KLSAHSLRHTAGTLALRAGASLRQVQDLLGHSDPRTTVLYAHISDR 358 >gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 379 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 HTLRH+FA+ L NG + +IQ ++GH ++ T Y ++ +E + Sbjct: 320 VCFHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAKLSPDAGVEAVN 371 >gi|150008748|ref|YP_001303491.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149937172|gb|ABR43869.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 406 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 391 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H +RH++AT L G L+++ +LGHS +S T IYT+V K+ + Sbjct: 334 FHAIRHTYATKLFERGVPLKTVSELLGHSNISITANIYTHVIPKQKTNAVE 384 >gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574] gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574] Length = 407 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium] gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus] gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] Length = 410 Score = 66.8 bits (163), Expect = 1e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH+ + TT IY +V+ ++ E D+ Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADRF 375 >gi|293367759|ref|ZP_06614408.1| transposase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318098|gb|EFE58495.1| transposase [Staphylococcus epidermidis M23864:W2(grey)] Length = 689 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 497 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 545 >gi|149923694|ref|ZP_01912089.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149815440|gb|EDM74979.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 316 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME---IYDQTHPSIT 61 HTLRH+F +HL G R+I + GH L TTQ Y +++ + + ++ PS Sbjct: 239 PHTLRHTFCSHLAMRGAPARAIMELAGHRDLLTTQGYMHLSPAALESSIGLLNRARPSWA 298 Query: 62 Q 62 Q Sbjct: 299 Q 299 >gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 S T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ ++ +I D+ Sbjct: 320 SITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTTLNIYTHAMKEKQDKIGDEF 375 >gi|283471201|emb|CAQ50412.1| transposition regulatory protein TnpB [Staphylococcus aureus subsp. aureus ST398] gi|329734825|gb|EGG71130.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU028] Length = 687 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 495 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 543 >gi|262384293|ref|ZP_06077428.1| integrase [Bacteroides sp. 2_1_33B] gi|262293996|gb|EEY81929.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 T++T+RHSFAT L + I +LGH+ + TTQIY + +R+ + Sbjct: 243 PVTSYTIRHSFATTLKEQDVPIEMISELLGHTSIKTTQIYLKSFSLERLSAV 294 >gi|200386479|ref|ZP_03213091.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603577|gb|EDZ02122.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 235 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 26/44 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+FA H + +GG++ ++Q IL H + T Y ++ + Sbjct: 177 HVLRHTFAAHFMMSGGNILALQKILWHHDIKMTMRYAHLAPDHL 220 >gi|254298753|ref|ZP_04966204.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e] gi|157808730|gb|EDO85900.1| phosphoribosyl-AMP cyclohydrolase [Burkholderia pseudomallei 406e] Length = 195 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 142 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 194 >gi|310826778|ref|YP_003959135.1| integrase [Eubacterium limosum KIST612] gi|308738512|gb|ADO36172.1| integrase [Eubacterium limosum KIST612] Length = 336 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSR-LSTTQIYTNVNSKRMMEIYDQ 55 T H+LRHSFAT + +G ++ I ++LGHS+ +TT IY +++ + + + Sbjct: 265 TFHSLRHSFATRAMESGVVIKVISALLGHSQTATTTDIYLHLSESFIRQEMMK 317 >gi|281423749|ref|ZP_06254662.1| integrase [Prevotella oris F0302] gi|282881646|ref|ZP_06290309.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281304405|gb|EFA96502.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|281402151|gb|EFB32982.1| integrase [Prevotella oris F0302] Length = 411 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 342 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|57867418|ref|YP_189033.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A] gi|283771080|ref|ZP_06343971.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19] gi|57638076|gb|AAW54864.1| Tn554-related, transposase B [Staphylococcus epidermidis RP62A] gi|283459674|gb|EFC06765.1| Tn554-transposase B [Staphylococcus aureus subsp. aureus H19] Length = 675 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 483 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 531 >gi|298251725|ref|ZP_06975528.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546317|gb|EFH80185.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 318 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 8/57 (14%) Query: 5 AHTLRHSFATHLLS---NGGD-----LRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+FA LL G D L +IQ +LGH+ ++TT IYT V++ + + Sbjct: 256 PHDLRHTFAKALLDPAAYGLDRPPMPLPAIQQLLGHADIATTTIYTRVSADDLARMM 312 >gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 430 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S ++ + + Sbjct: 353 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKN----VQR 408 Query: 63 KDKK 66 K KK Sbjct: 409 KRKK 412 >gi|253578634|ref|ZP_04855905.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849577|gb|EES77536.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 345 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 H LRH++ ++LL+NG + +Q +LGHS +STT +Y + + Sbjct: 285 HFHQLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNVYAHSTRDAKRKSVR 336 >gi|218263745|ref|ZP_03477746.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii DSM 18315] gi|218222535|gb|EEC95185.1| hypothetical protein PRABACTJOHN_03436 [Parabacteroides johnsonii DSM 18315] Length = 206 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 137 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 190 >gi|115379499|ref|ZP_01466594.1| site-specific recombinase, phage integrase family [Stigmatella aurantiaca DW4/3-1] gi|310822637|ref|YP_003954995.1| phage integrase [Stigmatella aurantiaca DW4/3-1] gi|115363508|gb|EAU62648.1| site-specific recombinase, phage integrase family [Stigmatella aurantiaca DW4/3-1] gi|309395709|gb|ADO73168.1| phage integrase [Stigmatella aurantiaca DW4/3-1] Length = 87 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSFA+HL+ G L+++Q +LGH+ + T Y +++ + Sbjct: 22 HDLRHSFASHLVMRGVALKAVQELLGHATIDMTMRYAHLSPDVKRDAVH 70 >gi|116625845|ref|YP_828001.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116229007|gb|ABJ87716.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 363 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ-------- 55 H++RHS A LL +G DL SI +LGH+ +TT Y V+ + + + Sbjct: 261 HPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVDLEMKRQAIAKVKPVPAAP 320 Query: 56 THPSIT 61 HP Sbjct: 321 AHPGAR 326 >gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] Length = 347 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 290 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 343 >gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30] gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10] Length = 410 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH+ + TT IY +V+ ++ E D+ Sbjct: 322 TVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSEQKKEETADRF 375 >gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5] gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5] Length = 347 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 290 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 343 >gi|319902467|ref|YP_004162195.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417498|gb|ADV44609.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 418 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H RHSF T L+S G + SI ++GHS +STTQ Y + ++ + D + Sbjct: 335 NLSYHAARHSFGTFLISAGLPIESIAKMMGHSNISTTQGYARITDDKISKDMD----ILM 390 Query: 62 QKDKKN 67 ++ KKN Sbjct: 391 ERRKKN 396 >gi|317505696|ref|ZP_07963590.1| integrase [Prevotella salivae DSM 15606] gi|315663187|gb|EFV02960.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQK 393 >gi|295104601|emb|CBL02145.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 383 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G D++++ +LGH+ + T Q Y + + R ++ Sbjct: 313 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNR 366 >gi|114762274|ref|ZP_01441732.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114767558|ref|ZP_01446311.1| integrase/recombinase [Pelagibaca bermudensis HTCC2601] gi|114540387|gb|EAU43474.1| integrase/recombinase [Roseovarius sp. HTCC2601] gi|114544892|gb|EAU47896.1| integrase/recombinase [Roseovarius sp. HTCC2601] Length = 184 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N + + +Q Sbjct: 106 VTPHSFRHATAVHLVAAGVDITVIRSWLGHVSLDTTNHYAQANLETKRKALEQ 158 >gi|116619765|ref|YP_821921.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222927|gb|ABJ81636.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 332 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 28/56 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + H LRH+ A LL G D I LGH + TTQIY + + E +T+P Sbjct: 256 VSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNP 311 >gi|325104620|ref|YP_004274274.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973468|gb|ADY52452.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 405 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + + H RH+FAT+ L+NG + + ++ HS + TQIY + S+ + + +Q Sbjct: 348 FTLSFHLSRHTFATNALNNGMRIEYVSKLMDHSDIGITQIYAKIISEELDKAVEQY 403 >gi|281425544|ref|ZP_06256457.1| integrase [Prevotella oris F0302] gi|281400350|gb|EFB31181.1| integrase [Prevotella oris F0302] Length = 406 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQK 393 >gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 411 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + +AH+LRH+F T L +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 349 NFSAHSLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403 >gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319] gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319] Length = 408 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAIDSLKQEAIN 400 >gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 HTLRH+F +HL G R IQ + GHS L TT+ Y +++ Sbjct: 309 PHTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERYMHLSP 350 >gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] Length = 333 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 276 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 329 >gi|270294597|ref|ZP_06200799.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276064|gb|EFA21924.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 408 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 8/69 (11%) Query: 2 STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIY 53 + T H RHS AT LL+NG + ++ ILGH+ + TTQIY + + + + + Sbjct: 340 TLTYHVARHSCATSVLLANGVPIETVSKILGHTNIRTTQIYARITNLKVSNDMEMLAQKL 399 Query: 54 DQTHPSITQ 62 D H ++ Sbjct: 400 DAAHRIASR 408 >gi|260170948|ref|ZP_05757360.1| transposase [Bacteroides sp. D2] gi|315919270|ref|ZP_07915510.1| transposase [Bacteroides sp. D2] gi|317475129|ref|ZP_07934397.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|313693145|gb|EFS29980.1| transposase [Bacteroides sp. D2] gi|316908773|gb|EFV30459.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 410 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 404 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA L+ G D+ S+ +LGHS L TT+IY ++ R + P I + Sbjct: 327 VTFHAGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESRRVTAMRSF-PDIFE 385 Query: 63 KDKKN 67 + K Sbjct: 386 EQAKE 390 >gi|309776171|ref|ZP_07671162.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53] gi|308916122|gb|EFP61871.1| putative phage integrase [Erysipelotrichaceae bacterium 3_1_53] Length = 388 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 T H LRH++ T+LL G D +++Q + GH TT IY V Sbjct: 322 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 366 >gi|302346947|ref|YP_003815245.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150881|gb|ADK97142.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 407 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT +S G + S+ +LGH+ + TQIY + +K++ ++ Sbjct: 340 NLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVERDMEE 393 >gi|296163972|ref|ZP_06846603.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900676|gb|EFG80051.1| phage integrase family domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 358 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH A+ L G +L +IQ +LGH+ TT Y +V++ + + + Sbjct: 291 KLTPHVLRHFCASQLYLAGMNLFAIQELLGHAWTGTTARYIHVHATHVEDAW 342 >gi|291541000|emb|CBL14111.1| Site-specific recombinase XerD [Roseburia intestinalis XB6B4] Length = 411 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+F +++ +G + + +Q I+GHS +S T YT+V + E + + Sbjct: 353 PITPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKA 408 >gi|291530998|emb|CBK96583.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] gi|295104190|emb|CBL01734.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] gi|295115223|emb|CBL36070.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 403 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 T H LRH++ T+LL G D +++Q + GH TT IY V Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381 >gi|225008848|gb|ACN78946.1| IntIA [Vibrio metschnikovii] Length = 87 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/32 (62%), Positives = 26/32 (81%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHS 33 S + HTLRHSFATHLL +G D+R++Q LGH+ Sbjct: 56 SVSCHTLRHSFATHLLESGADIRTVQEQLGHA 87 >gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 414 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 HTLRH+ A+ L+ G L +++ LGH ++S T+ Y ++ + + Sbjct: 333 KVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQISQTERYAHLAPDSLKQA 383 >gi|319777296|ref|YP_004136947.1| integrase [Mycoplasma fermentans M64] gi|318038371|gb|ADV34570.1| Integrase [Mycoplasma fermentans M64] Length = 253 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + L D+ + ++GH + TT+IY S EI D+ Sbjct: 197 VYPHSFRHRFAKNFLEKYNDISFLADLMGHESIETTRIYLRKTSNEQQEIVDK 249 >gi|257438450|ref|ZP_05614205.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199029|gb|EEU97313.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 384 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 H LRH+FAT L G D++++ +LGH+ + T Q Y + + R ++ Sbjct: 313 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNRIFSR 370 >gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1] gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1] gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3] gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1] gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1] gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3] Length = 394 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 T H+LRH+ + L+ G ++ IQ LGH+ + TT IY ++ Sbjct: 329 VTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIETTMNIYAHLTKD 374 >gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] Length = 388 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 5 AHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH++A+HL S+G DL ++Q +L HS TQ Y ++ + M Sbjct: 322 FHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAHLADEAMKRA 370 >gi|317475990|ref|ZP_07935245.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316907922|gb|EFV29621.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 410 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|169838713|ref|ZP_02871901.1| recombinase [candidate division TM7 single-cell isolate TM7a] Length = 222 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H R+S A LL + D R +Q I G++ ++TT+ T+V ++ +IY+ Sbjct: 163 NVYPHIFRYSLAEILLGDNADTRIVQEIFGYASITTTETCTHVEKSKLKKIYNN 216 >gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 327 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH++AT LL + +Q +LGH+ +STT IY++V + + Sbjct: 257 LDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMPEIKKAAAMK 312 >gi|310642405|ref|YP_003947163.1| transposase b [Paenibacillus polymyxa SC2] gi|309247355|gb|ADO56922.1| transposase B [Paenibacillus polymyxa SC2] Length = 262 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 26/51 (50%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH++ ++++G D+ ++Q +L H+ T Y + + E ++ Sbjct: 210 HQFRHTYGVKMINSGADILTVQELLAHASPEMTMRYAKLLDETKREAFESA 260 >gi|295101383|emb|CBK98928.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 403 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 T H LRH++ T+LL G D +++Q + GH TT IY V Sbjct: 337 FGVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381 >gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 319 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY-TNVNSKRMMEIYDQTHP 58 + HT RH+ AT + NGGDL +QS+LGH+ L+ T+ Y ++ S+ E + + P Sbjct: 258 SPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASLQSEAAAEAHKKFSP 313 >gi|113473885|ref|YP_718148.1| putative integrase [Sphingomonas sp. KA1] gi|112821565|dbj|BAF03436.1| putative integrase [Sphingomonas sp. KA1] Length = 334 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS A H L+ GD+R + LGH+ + +T+ Y + ++I Sbjct: 253 VTPHVLRHSCAMHTLAATGDIRKVALWLGHASIQSTEAYLRADPDEKLQILAAH 306 >gi|262383655|ref|ZP_06076791.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294553|gb|EEY82485.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RH FAT LS G + S+ ILGH+ ++TTQ Y + ++++ Sbjct: 338 EISFHCARHGFATLALSKGMPIESVSRILGHTNITTTQKYAKITTEKI 385 >gi|301163084|emb|CBW22633.1| putative transposase [Bacteroides fragilis 638R] Length = 419 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 349 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396 >gi|295102937|emb|CBL00482.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 391 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG ++ IQ LGHS STT IY +++ Sbjct: 325 PIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369 >gi|291550900|emb|CBL27162.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 382 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT + G D++++ ILGHS ++TT Y + + ++ + D+ Sbjct: 320 PLHFHCLRHTFATRCVELGFDMKTLSEILGHSNINTTLNRYVHPSMEQKQQNMDK 374 >gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] Length = 295 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T TLR+SFA LL +G D R IQ +LG+S L + Y + + + Y Q P I Sbjct: 237 TVTPRTLRYSFAVQLLQSGADGRLIQEMLGYSELRAIKPYLKMTVQELSADYRQHQPKI 295 >gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2] gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2] Length = 383 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + LL +G ++ +Q +GH+ + TT +Y +V K+ E ++ Sbjct: 324 TVHGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKREETGNRF 377 >gi|228990729|ref|ZP_04150694.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM 12442] gi|228769255|gb|EEM17853.1| Transposition regulatory protein TnpB [Bacillus pseudomycoides DSM 12442] Length = 678 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 26/50 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H RH++A +L++G D+ ++Q +L H+ T Y + + ++ Sbjct: 479 HQFRHTYAVKMLNSGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFEA 528 >gi|218281982|ref|ZP_03488300.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989] gi|218217038|gb|EEC90576.1| hypothetical protein EUBIFOR_00869 [Eubacterium biforme DSM 3989] Length = 307 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRHSFAT + + D +++ +LGHS +STT +Y + N ++ + D+ Sbjct: 251 FHGLRHSFATRCIESKADYKTVSVLLGHSNISTTLNLYVHPNKEQKKKTIDK 302 >gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H LRH++ +HL G L+ IQ ++GH+ + T Y +++ + Sbjct: 329 SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374 >gi|296163757|ref|ZP_06846462.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295885996|gb|EFG65909.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 334 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 + H +RH+ ATHLL G D+ I LGH + TT IY N E + P+ + Sbjct: 258 ISPHVVRHATATHLLQAGVDISVIALWLGHESIDTTHIYMESNLAHKEEALGRLQPAGQR 317 Query: 63 KDK 65 + Sbjct: 318 MPR 320 >gi|290770154|gb|ADD61913.1| putative protein [uncultured organism] Length = 403 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNV 44 T H LRH++ T+LL G D +++Q + GH TT IY V Sbjct: 337 FDVTPHQLRHTYITNLLYAGVDPKTVQYLAGHENSKTTMDIYAKV 381 >gi|295086152|emb|CBK67675.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 410 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|224027003|ref|ZP_03645369.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM 18228] gi|224020239|gb|EEF78237.1| hypothetical protein BACCOPRO_03762 [Bacteroides coprophilus DSM 18228] Length = 407 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ-THPSI 60 + TAH RH+F +++++G + SI ++GHS LS+TQ+Y + ++ + D+ H Sbjct: 334 NLTAHVARHTFGVNMVTSGISMESIAKMMGHSSLSSTQVYAVITDDKISKDMDKLMHRRE 393 Query: 61 TQKDKKN 67 T++ +N Sbjct: 394 TKETDQN 400 >gi|167913063|ref|ZP_02500154.1| putative bacteriophage integrase [Burkholderia pseudomallei 112] Length = 247 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++S E + P Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 246 >gi|312878076|ref|ZP_07738012.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795155|gb|EFR11548.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 278 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH++AT LL + +Q +LGH+ +STT IY++V + + Sbjct: 208 LDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVIPEIKKAAAMK 263 >gi|303238111|ref|ZP_07324650.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302481706|gb|EFL44762.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT +S G + S+ +LGH+ + TQIY + +K++ +Q Sbjct: 340 NLTFHMARHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVEHDMEQ 393 >gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] Length = 376 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 + H LRH+FAT + G +++Q +LGHS + T +Y + + + D Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEMD 367 >gi|153815667|ref|ZP_01968335.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756] gi|145846908|gb|EDK23826.1| hypothetical protein RUMTOR_01903 [Ruminococcus torques ATCC 27756] Length = 376 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 + H LRH+FAT + G +++Q +LGHS + T +Y + + + D Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEMD 367 >gi|319653998|ref|ZP_08008091.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2] gi|317394320|gb|EFV75065.1| hypothetical protein HMPREF1013_04710 [Bacillus sp. 2_A_57_CT2] Length = 359 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +AH LRHS AT D+ S++ LGH + TT IYT+V S + Sbjct: 302 SAHKLRHSMATRHYQKNKDIASLKDHLGHESIETTMIYTHVLSSDQKD 349 >gi|281334680|gb|ADA61764.1| Tn554-related, transposase B [Staphylococcus epidermidis] Length = 607 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 415 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 463 >gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + L N GD+ ++Q ILGHS + + Y N+ SK ++ +++ P Sbjct: 315 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 372 >gi|167721750|ref|ZP_02404986.1| putative bacteriophage integrase [Burkholderia pseudomallei DM98] Length = 235 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 234 >gi|115374267|ref|ZP_01461552.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310818193|ref|YP_003950551.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115368688|gb|EAU67638.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391265|gb|ADO68724.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 402 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH++ +HL G L++IQ ++GH + T+ Y +++ + Q Sbjct: 333 HDLRHTYGSHLAMRGVPLKAIQELMGHVTIEMTERYAHLSPEVRASAVQQ 382 >gi|13488299|ref|NP_085850.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028099|dbj|BAB54691.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 416 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS A+ LL +G L+ I +L H L+T+ +Y V++ R+ + Sbjct: 360 PHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLAAV 407 >gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7] Length = 404 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ V S + Sbjct: 329 ITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSEVLSSTI 375 >gi|303237002|ref|ZP_07323575.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482811|gb|EFL45833.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 421 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395 >gi|265753035|ref|ZP_06088604.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|263236221|gb|EEZ21716.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 411 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 343 TWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMEN 395 >gi|262046043|ref|ZP_06019007.1| prophage integrase [Lactobacillus crispatus MV-3A-US] gi|260574002|gb|EEX30558.1| prophage integrase [Lactobacillus crispatus MV-3A-US] Length = 393 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 3 TTAHTLRHSFATHLLSN-GGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 + H RH+FAT L+ N +++Q +LGH+ + T IYT++N+K + + Sbjct: 333 ISIHGFRHTFATLLIENTNVKPKTVQMLLGHANIKMTLDIYTHINNKNKEDAIN 386 >gi|291525641|emb|CBK91228.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 399 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+F +++ +G + + +Q I+GHS +S T YT+V + E + + Sbjct: 341 PITPHVCRHTFCSNMAKSGMNPKMLQYIMGHSDISVTMNTYTHVKFQDAQEDFQKA 396 >gi|333030040|ref|ZP_08458101.1| integrase family protein [Bacteroides coprosuis DSM 18011] gi|332740637|gb|EGJ71119.1| integrase family protein [Bacteroides coprosuis DSM 18011] Length = 410 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+F+T + LS G + S+ +LGH+ + TTQIY + ++++ D Sbjct: 340 NLTFHMARHTFSTTITLSQGVPIESVSKMLGHTNIRTTQIYARITNEKVSNDMD 393 >gi|325297680|ref|YP_004257597.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317233|gb|ADY35124.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H ++TTQIY ++ + + E ++ Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 364 >gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395 >gi|254260803|ref|ZP_04951857.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1710a] gi|254219492|gb|EET08876.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1710a] Length = 247 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 194 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 246 >gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238] gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238] Length = 422 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ + D + K + Sbjct: 337 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFKPKPR 396 >gi|189424492|ref|YP_001951669.1| integrase [Geobacter lovleyi SZ] gi|189420751|gb|ACD95149.1| integrase family protein [Geobacter lovleyi SZ] Length = 421 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H +RH FA+ L+ G DL +++ +LGHS L T Y ++ + Sbjct: 367 HDMRHHFASWLVMAGVDLNTVRELLGHSDLKMTLRYAHLAPEHKAAAV 414 >gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf. novicida 3523] Length = 375 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+F + L+ G + ++ + GH+ + TTQIY +++ D Sbjct: 323 FHDLRHNFCSMLVMKGVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAID 372 >gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] Length = 383 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H LRHSFA+ L G DL I +LGHS + TT Y ++ + + Sbjct: 322 HDLRHSFASDALEMGADLTMIGHMLGHSDIKTTARYAHLKRENVR 366 >gi|291527876|emb|CBK93462.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 458 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LLSNG + +Q +LGHS +STT +Y + K + Sbjct: 398 HFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKRD 446 >gi|167904784|ref|ZP_02491989.1| putative bacteriophage integrase [Burkholderia pseudomallei NCTC 13177] Length = 235 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++S E + P Sbjct: 182 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSSDHGREAVQKLLP 234 >gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] Length = 387 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT G D + +Q LGH ++ T +YT+V + D+ Sbjct: 327 PHALRHTFATRCFEAGIDAKVVQGFLGHYSIAITLDLYTHVTDDKAKSEMDK 378 >gi|120537151|ref|YP_957208.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120326986|gb|ABM21293.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 327 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 27/55 (49%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRHS A LL +G D+ I+ LGH+ ++TT Y N + + Sbjct: 257 KITPHVLRHSCAVALLQSGVDITVIRDYLGHASVATTSRYLTTNLQMKRAALEAF 311 >gi|218263823|ref|ZP_03477799.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii DSM 18315] gi|218222496|gb|EEC95146.1| hypothetical protein PRABACTJOHN_03489 [Parabacteroides johnsonii DSM 18315] Length = 333 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H ++TTQIY ++ + + E ++ Sbjct: 277 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 329 >gi|206973194|ref|ZP_03234116.1| integrase/recombinase, phage integrase family [Bacillus cereus AH1134] gi|206732078|gb|EDZ49278.1| integrase/recombinase, phage integrase family [Bacillus cereus AH1134] Length = 332 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSIEVTSIYTNINNEKKREAVDR 325 >gi|29347687|ref|NP_811190.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|237718219|ref|ZP_04548700.1| transposase [Bacteroides sp. 2_2_4] gi|255008772|ref|ZP_05280898.1| transposase [Bacteroides fragilis 3_1_12] gi|313146514|ref|ZP_07808707.1| transposase [Bacteroides fragilis 3_1_12] gi|29339588|gb|AAO77384.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|229452403|gb|EEO58194.1| transposase [Bacteroides sp. 2_2_4] gi|313135281|gb|EFR52641.1| transposase [Bacteroides fragilis 3_1_12] Length = 419 Score = 66.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 349 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 396 >gi|331269369|ref|YP_004395861.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] gi|329125919|gb|AEB75864.1| phage integrase family site specific recombinase [Clostridium botulinum BKT015925] Length = 357 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH++AT L+SNG D ++ ILGH+ T +IY++V M + Sbjct: 300 ITMHELRHTYATALISNGVDFKTAAKILGHTVEMTMKIYSHVTDDMMKKA 349 >gi|228470648|ref|ZP_04055504.1| transposase [Porphyromonas uenonis 60-3] gi|313887085|ref|ZP_07820784.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|228307656|gb|EEK16635.1| transposase [Porphyromonas uenonis 60-3] gi|312923496|gb|EFR34306.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 406 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSQMLGHTNLRTTQVYAAVSSERIHREMQN 393 >gi|189468269|ref|ZP_03017054.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM 17393] gi|189436533|gb|EDV05518.1| hypothetical protein BACINT_04666 [Bacteroides intestinalis DSM 17393] Length = 432 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H RHSFAT + L+ G + S+ +LGH+ + TTQIY V +++ Sbjct: 362 ITYHLARHSFATEICLTKGVPIESVSKMLGHTNIQTTQIYARVVDRKL 409 >gi|168204762|ref|ZP_02630767.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] gi|170663693|gb|EDT16376.1| prophage LambdaCh01, site-specific recombinase, phage integrase family [Clostridium perfringens E str. JGS1987] Length = 386 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+ AT LLS G + ++IQ LGH+ ++TT IY++V + + ++ Sbjct: 325 HDLRHTNATLLLSQGVNFKTIQIRLGHADINTTLNIYSHVTEEMQKDATNK 375 >gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 171 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LL+ G + + ILGH + T+IY + K+ +E + Sbjct: 107 ITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKLETVN 158 >gi|260885894|ref|ZP_05736094.2| integrase [Prevotella tannerae ATCC 51259] gi|260851415|gb|EEX71284.1| integrase [Prevotella tannerae ATCC 51259] Length = 471 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + Sbjct: 402 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMKN 455 >gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 297 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEIYDQT 56 + HT RH+F ++L++G L +Q ++GH + +T+IY VN ++++ Y+ Sbjct: 242 EISPHTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKILKGYNNY 297 >gi|295115591|emb|CBL36438.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 219 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + + H LRH+F T L N +L+ IQSI+GH + TT IY K+ E ++ Sbjct: 157 NFSCHHLRHTFCTRLCENETNLKVIQSIMGHKNIETTLDIYAEATEKKKQESFEN 211 >gi|229176444|ref|ZP_04303879.1| Transposition regulatory protein TnpB [Bacillus cereus MM3] gi|228607026|gb|EEK64413.1| Transposition regulatory protein TnpB [Bacillus cereus MM3] Length = 704 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ ++Q +L H+ T Y + + + ++ Sbjct: 505 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 553 >gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42] Length = 304 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y +++ EI ++ HP Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEK-HPR 291 >gi|3930211|gb|AAC80279.1| transposase [Bacteroides fragilis] Length = 410 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|327404951|ref|YP_004345789.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320459|gb|AEA44951.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 421 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+H RH+FAT + L+NG + ++ +LGH+ + TTQIY V +++ + + Sbjct: 350 KLTSHIARHTFATTVTLANGVPIETVSRMLGHTNIRTTQIYAKVVEQKVSDDMN 403 >gi|301162746|emb|CBW22293.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 410 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RHS+AT + LSN + ++ +LGH + TTQIY + ++++ ++ Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394 >gi|295103148|emb|CBL00692.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 383 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G D++++ +LGH+ + T Q Y + + R ++ Sbjct: 313 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNR 366 >gi|224024735|ref|ZP_03643101.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM 18228] gi|256841208|ref|ZP_05546715.1| integrase [Parabacteroides sp. D13] gi|224017957|gb|EEF75969.1| hypothetical protein BACCOPRO_01463 [Bacteroides coprophilus DSM 18228] gi|256737051|gb|EEU50378.1| integrase [Parabacteroides sp. D13] Length = 406 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + H RH+F T LS G + S+ +LGH+ + TTQIY + ++++ Sbjct: 340 ISYHCARHTFGTLALSKGMPIESVSRVLGHTNIVTTQIYAKITTQKL 386 >gi|239918537|ref|YP_002958095.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281415254|ref|ZP_06246996.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239839744|gb|ACS31541.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 395 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQT 56 H RH+ AT +L +G + + +LGH+ + +TT +Y +++++ + ++ Sbjct: 333 PHWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDARKALEEA 385 >gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 S H LRH++ +HL G L+ IQ ++GH+ + T Y +++ + Sbjct: 329 SIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374 >gi|298375473|ref|ZP_06985430.1| integrase [Bacteroides sp. 3_1_19] gi|298267973|gb|EFI09629.1| integrase [Bacteroides sp. 3_1_19] Length = 410 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|295086030|emb|CBK67553.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 368 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H ++TTQIY ++ + + E ++ Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 364 >gi|254883641|ref|ZP_05256351.1| transposase [Bacteroides sp. 4_3_47FAA] gi|319642287|ref|ZP_07996946.1| transposase [Bacteroides sp. 3_1_40A] gi|254836434|gb|EET16743.1| transposase [Bacteroides sp. 4_3_47FAA] gi|317386143|gb|EFV67063.1| transposase [Bacteroides sp. 3_1_40A] Length = 410 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|270340183|ref|ZP_06203572.1| integrase [Prevotella bergensis DSM 17361] gi|270332346|gb|EFA43132.1| integrase [Prevotella bergensis DSM 17361] Length = 106 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+F T L G + SI ++GHS +++TQIY + +++ + Sbjct: 55 PLTWHCARHTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQITDQKIAK 104 >gi|254931487|ref|ZP_05264846.1| transposase B [Listeria monocytogenes HPB2262] gi|293583039|gb|EFF95071.1| transposase B [Listeria monocytogenes HPB2262] Length = 637 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RH+ T +++NG +Q LGH T Y ++ + + + + + Sbjct: 464 FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 519 >gi|197303476|ref|ZP_03168515.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC 29176] gi|197297474|gb|EDY32035.1| hypothetical protein RUMLAC_02198 [Ruminococcus lactaris ATCC 29176] Length = 426 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54 + T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + Sbjct: 345 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFR 404 Query: 55 QTHPSITQKDKK 66 + + QK +K Sbjct: 405 KAQAEVEQKKEK 416 >gi|172055124|ref|YP_001806451.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701405|gb|ACB54385.1| integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 409 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 +AH+LRH+ AT L G L +Q +LGH+ TT +Y ++ + + Sbjct: 309 KLSAHSLRHTAATLALRAGATLEQVQDLLGHTDPKTTMVYVHIGDRWL 356 >gi|189499645|ref|YP_001959115.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189495086|gb|ACE03634.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 390 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + H RH+ AT LL+ G L ++ ILGH TT Y ++ + Sbjct: 324 EISPHWARHTGATMLLNAGASLEAVGEILGHIDRKTTMRYAKIHPQTKRSTI 375 >gi|265763143|ref|ZP_06091711.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255751|gb|EEZ27097.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 410 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RHS+AT + LSN + ++ +LGH + TTQIY + ++++ ++ Sbjct: 340 NVTWHQSRHSYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEK 394 >gi|307566493|ref|ZP_07628924.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307344804|gb|EFN90210.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ ILGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKILGHRFISTTELYAKVSKSKIAREMQ 395 >gi|229495696|ref|ZP_04389424.1| integrase [Porphyromonas endodontalis ATCC 35406] gi|229317270|gb|EEN83175.1| integrase [Porphyromonas endodontalis ATCC 35406] Length = 411 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + ++ Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388 >gi|226325984|ref|ZP_03801502.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758] gi|225205526|gb|EEG87880.1| hypothetical protein COPCOM_03798 [Coprococcus comes ATCC 27758] Length = 214 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH+F ++LLSNG + +Q +LGH+ +STT IY + + Sbjct: 154 HFHMLRHTFTSNLLSNGAAPKDVQELLGHADVSTTMNIYAHSKREAKR 201 >gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630] gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26] gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932] gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255] gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55] gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34] gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79] gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291] gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like [Clostridium difficile] gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291] Length = 304 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y +++ EI ++ HP Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEK-HPR 291 >gi|291434863|ref|YP_003518244.1| tyrosine-based site-specific recombinase activity site-specific DNA integration [Cupriavidus metallidurans CH34] gi|93359093|gb|ABF13179.1| tyrosine-based site-specific recombinase activity site-specific DNA integration [Cupriavidus metallidurans CH34] Length = 398 Score = 66.1 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H LRHS ATHLL G + +Q L H ++TT+ YT+ Sbjct: 340 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 381 >gi|315608518|ref|ZP_07883504.1| integrase [Prevotella buccae ATCC 33574] gi|315249790|gb|EFU29793.1| integrase [Prevotella buccae ATCC 33574] Length = 447 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 380 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTSLRTTQVYAAVSSERIHRDMQA 434 >gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 355 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V + ++ Sbjct: 295 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 348 >gi|167628714|ref|YP_001679213.1| phage recombinase [Heliobacterium modesticaldum Ice1] gi|167591454|gb|ABZ83202.1| phage recombinase [Heliobacterium modesticaldum Ice1] Length = 349 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 T H+ RHS A H+L G L I++ LGH+ + TT IY NV + Sbjct: 265 TPHSFRHSIAVHMLECGESLVVIKAFLGHTSIMTTTIYANVTPE 308 >gi|291515802|emb|CBK65012.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 420 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + + H RH+F T + L G + ++ +LGH +++TTQIY + + +M E Sbjct: 343 NLSTHIGRHTFGTTVTLEKGVPIETVSEMLGHKQITTTQIYAKLTANKMKEDVR 396 >gi|295108411|emb|CBL22364.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 426 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 7/72 (9%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54 + T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + Sbjct: 345 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEELKRMEEFR 404 Query: 55 QTHPSITQKDKK 66 + + QK +K Sbjct: 405 KAQAEVEQKKEK 416 >gi|120401480|ref|YP_951309.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120404558|ref|YP_954387.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|120406442|ref|YP_956271.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119954298|gb|ABM11303.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119957376|gb|ABM14381.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] gi|119959260|gb|ABM16265.1| phage integrase family protein [Mycobacterium vanbaalenii PYR-1] Length = 349 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH++ T L + G DL ++++++GH TT Y +++ +++ Y Sbjct: 287 VRPHRLRHTYGTELSAAGIDLLTLRALMGHVSPETTARYVHLSIEQLAAEYGAA 340 >gi|323161462|gb|EFZ47362.1| resolvase domain protein [Escherichia coli E128010] Length = 68 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 29/40 (72%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 HT RHS+A H+L G L+ +QS++GH +S+T++YT V Sbjct: 1 PHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKV 40 >gi|300742464|ref|ZP_07072485.1| phage integrase family protein [Rothia dentocariosa M567] gi|300381649|gb|EFJ78211.1| phage integrase family protein [Rothia dentocariosa M567] Length = 225 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH FAT + + +LR++Q +LGH+ +STTQ Y V + + Sbjct: 167 TPHQLRHWFATTVYAESHNLRAVQELLGHADISTTQRYIGVLDNDLSTAIN 217 >gi|254498877|ref|ZP_05111582.1| putative integrase/recombinase [Legionella drancourtii LLAP12] gi|254351862|gb|EET10692.1| putative integrase/recombinase [Legionella drancourtii LLAP12] Length = 418 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H+LRHS AT+LL + I ILGH+ ++TT IY + + + ++ Sbjct: 361 HSLRHSLATYLLEDNIPFSLIADILGHASMNTTMIYAKASVETLRQV 407 >gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63] gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07] gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07] Length = 304 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPS 59 + LRHSFA HLL+ G ++ + ILG+ LS+ Q+Y +++ EI ++ HP Sbjct: 234 NINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEK-HPR 291 >gi|146284555|ref|YP_001165508.1| phage integrase family protein [Enterobacter sp. 638] gi|145320688|gb|ABP62834.1| phage integrase family protein [Enterobacter sp. 638] Length = 329 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LR +FAT +L NG DL +++ +GH+ ++TTQ Y +R+ + D+ Sbjct: 275 PHDLRRTFATAMLDNGEDLITVKDAMGHASVTTTQQYDRRGEERLRQARDR 325 >gi|260171160|ref|ZP_05757572.1| transposase [Bacteroides sp. D2] gi|315919477|ref|ZP_07915717.1| transposase [Bacteroides sp. D2] gi|313693352|gb|EFS30187.1| transposase [Bacteroides sp. D2] Length = 410 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386 >gi|237710668|ref|ZP_04541149.1| phage integrase [Bacteroides sp. 9_1_42FAA] gi|229455390|gb|EEO61111.1| phage integrase [Bacteroides sp. 9_1_42FAA] Length = 379 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT L+NG + ++ +LGH+ + TTQ Y V + + + ++ Sbjct: 320 NLTVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKVLNAEVEKDFE 372 >gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 387 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH++AT L L+++Q +LGH +S T YT+V K + D+ Sbjct: 330 FHALRHTYATKLFEKDVQLKTVQKLLGHKNISITADTYTHVMPKEKISAADK 381 >gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam] gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam] Length = 382 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA + L N GD+ ++Q ILGHS + + Y N+ SK ++ +++ P Sbjct: 321 VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSP 378 >gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580] gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 352 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H RH+ A+ L GGDLR +Q+I+GH L YT+++ + + Sbjct: 277 VHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLSLESLAR 325 >gi|298208931|ref|YP_003717110.1| putative transposase [Croceibacter atlanticus HTCC2559] gi|83848858|gb|EAP86727.1| putative transposase [Croceibacter atlanticus HTCC2559] Length = 416 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FAT + LSNG + ++ +LGH++LSTTQIY V ++ ++ Sbjct: 344 KLTFHVARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIESKVSNDMNK 398 >gi|210614273|ref|ZP_03290144.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787] gi|210150757|gb|EEA81766.1| hypothetical protein CLONEX_02357 [Clostridium nexile DSM 1787] Length = 431 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 + H LRH++ ++LLSNG + +Q +LGHS +STT +Y + K Sbjct: 369 NFHFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKR 418 >gi|295104559|emb|CBL02103.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 391 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG ++ IQ LGHS STT IY +++ Sbjct: 325 PIRFHDLRHSCASLLLANGVPMKQIQEWLGHSDFSTTANIYAHLD 369 >gi|239622583|ref|ZP_04665614.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514580|gb|EEQ54447.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 279 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H+LRH +AT + DL + +LGHS + TTQIY + R+ Sbjct: 224 PHSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRLR 269 >gi|260641921|ref|ZP_05413997.2| integrase [Bacteroides finegoldii DSM 17565] gi|260624123|gb|EEX46994.1| integrase [Bacteroides finegoldii DSM 17565] Length = 396 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H RHSF T ++++G + SI ++GH+ +++TQ+Y V +++ D Sbjct: 328 NLSYHMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKISSDMDWLMKRRK 387 Query: 62 QKD 64 +KD Sbjct: 388 RKD 390 >gi|226325781|ref|ZP_03801299.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758] gi|225205905|gb|EEG88259.1| hypothetical protein COPCOM_03594 [Coprococcus comes ATCC 27758] Length = 124 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 H LRH++ ++LLSNG + +Q +LGH+ +STT IY + + Sbjct: 64 HFHMLRHTYTSNLLSNGAAPKDVQELLGHTDVSTTMNIYAHATREAKR 111 >gi|114566275|ref|YP_753429.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337210|gb|ABI68058.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 337 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 +S + H +RHS ATHL++ ++ +++ LGH+ + TTQ+Y N + + ++ Sbjct: 254 LSLSPHLMRHSKATHLVNENVNIYNVRDFLGHTSVITTQVYLTSNPEVTRKAIEKA 309 >gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 384 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 T H+ RH+FA L NG D+ ++ +LGH + T IY ++ K+ E + P ++ Sbjct: 326 TFHSGRHTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTERIPELS 383 >gi|329315330|gb|AEB89743.1| Transposase A from transposon Tn554 [Staphylococcus aureus subsp. aureus T0131] Length = 302 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T+H LRH+ AT L+ G D+ +Q LGH+ + TT Y +++ + M +++ Sbjct: 238 IEFTSHMLRHTHATQLIREGWDVAFVQKRLGHAHVQTTLNTYVHLSDQDMKNEFNKYLER 297 Query: 60 ITQKD 64 K Sbjct: 298 KEHKK 302 >gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 335 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 AH R + AT LL+ G + +Q ILGH+ +TTQIY ++ + + Y + Sbjct: 280 VYAHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEYRR 332 >gi|237720977|ref|ZP_04551458.1| phage integrase [Bacteroides sp. 2_2_4] gi|229449812|gb|EEO55603.1| phage integrase [Bacteroides sp. 2_2_4] Length = 379 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+FAT L+NG + ++ +LGH+ + TTQ Y V + + + ++ Sbjct: 320 NLTVHMSRHTFATMCLNNGVKMENVSKMLGHTNVRTTQQYAKVLNAEVEKDFE 372 >gi|167740725|ref|ZP_02413499.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 14] Length = 151 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 98 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150 >gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 390 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+ L G DL I +LGHS + TT Y ++ + + DQ Sbjct: 325 HDLRHSFASDALEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQ 374 >gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F +HL NG L I+ I GH L++ Q Y + + KR+ +I ++ Sbjct: 253 EVTVHKCRHTFLSHLCQNGASLAEIKQISGHKNLASLQRYLHNDQKRLNKIVNK 306 >gi|188993958|ref|YP_001928210.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC 33277] gi|188593638|dbj|BAG32613.1| putative bacteriophage integrase [Porphyromonas gingivalis ATCC 33277] Length = 411 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + ++ Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388 >gi|29345486|ref|NP_808989.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29337378|gb|AAO75183.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|295087238|emb|CBK68761.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 410 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RH+FAT L+ G + ++ +LGH+ + TTQIY + + ++ Sbjct: 338 NLTFHLARHTFATTTTLAKGVPVETVSKMLGHTNIETTQIYARITNNKI 386 >gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] Length = 298 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + ++ RH+FA HLL+ G L +Q ++GH + +T+IY Sbjct: 244 EISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 283 >gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2] gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2] Length = 324 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLST-TQIYTNVNSKRMMEIYDQTHPSITQK 63 H+LRH+ AT LL +G + +Q LGHSR++T Y +V K E D + + Sbjct: 262 FHSLRHTHATMLLEDGVKPKIVQERLGHSRIATKMDKYVHVTRKMKTEAVDIFAQRLKKS 321 Query: 64 DKK 66 ++ Sbjct: 322 AER 324 >gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185] Length = 294 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + ++ RH+FA HLL+ G L +Q ++GH + +T+IY Sbjct: 240 EISPYSFRHTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 279 >gi|291526844|emb|CBK92430.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 431 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMM 50 + H LRH++ ++LLSNG + +Q +LGHS +STT +Y + K Sbjct: 369 NFHFHQLRHTYTSNLLSNGAAPKDVQELLGHSDVSTTMNVYAHSTRKAKR 418 >gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] Length = 306 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + +AHT RH+FA L G D+ ++Q +L HS L T+ Y ++ + E D+ +P Sbjct: 243 VRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNPLN 302 Query: 61 T 61 + Sbjct: 303 S 303 >gi|301161269|emb|CBW20807.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 411 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + ++ Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388 >gi|253568529|ref|ZP_04845940.1| transposase [Bacteroides sp. 1_1_6] gi|251842602|gb|EES70682.1| transposase [Bacteroides sp. 1_1_6] Length = 410 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|283797481|ref|ZP_06346634.1| putative integrase [Clostridium sp. M62/1] gi|291074849|gb|EFE12213.1| putative integrase [Clostridium sp. M62/1] gi|295090011|emb|CBK76118.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 334 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H+LRHSFA+ + NG D +++ ILGHS + T IY + + ++ D+ Sbjct: 275 PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVKITMDIYVHSSMRQKKSYMDR 329 >gi|150008734|ref|YP_001303477.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149937158|gb|ABR43855.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 368 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H ++TTQIY ++ + + E ++ Sbjct: 312 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVTTTQIYADLVNSKKRETANK 364 >gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 573 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H LRH+ AT ++ G L +I ++LGH LS T++Y + ++ + + Y Sbjct: 419 VTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYARIANRTVADEY 469 >gi|325299955|ref|YP_004259872.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319508|gb|ADY37399.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 385 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H+ RH+ AT L+ +G L ++Q +LGH + TTQIY V S+ ++ + Sbjct: 331 SFHSSRHTNATLLIYSGAKLTTVQKLLGHRSIKTTQIYGEVFSQTLVNDLKKC 383 >gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] Length = 414 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVN 45 H LRHS A+ LL+NG L+ IQ LGHS STT IY +++ Sbjct: 337 FHDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAHLD 378 >gi|119855366|ref|YP_935969.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119867745|ref|YP_937697.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119693834|gb|ABL90907.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119698083|gb|ABL95154.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 364 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 H LRH+ AT +L +G L + +LGH+ ++TT Y ++ + ++ Q Sbjct: 301 PHWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQA 353 >gi|56550669|ref|YP_161735.1| integrase/recombinase E2 protein [Cupriavidus metallidurans CH34] gi|56410375|emb|CAI30257.1| hypothetical integrase/recombinase E2 protein [Cupriavidus metallidurans CH34] Length = 364 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + + H LRHS ATHLL G + +Q L H ++TT+ YT+ Sbjct: 306 AASTHWLRHSHATHLLRAGVPVTDVQRTLRHRDINTTRRYTH 347 >gi|332885111|gb|EGK05363.1| hypothetical protein HMPREF9456_02862 [Dysgonomonas mossii DSM 22836] Length = 445 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+F T + LS G + ++ ++GH + TTQIY + +++ E + I Sbjct: 355 TITYHQSRHNFGTLITLSQGVPMETVSQMMGHKCIKTTQIYAKLTRQKLNEDMKKLSSRI 414 Query: 61 TQKDK 65 QK K Sbjct: 415 GQKYK 419 >gi|325851900|ref|ZP_08171033.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484677|gb|EGC87591.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 417 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395 >gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 368 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 311 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETANK 364 >gi|291547754|emb|CBL20862.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 411 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + +AH LRH+F T L +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 349 NFSAHNLRHTFCTRLCERETNLKVIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403 >gi|288561496|ref|YP_003428902.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4] gi|288548128|gb|ADC52010.1| transposition regulatory protein TnpB [Bacillus pseudofirmus OF4] Length = 696 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH++A +L++G D ++Q +L HS T +Y + +++++ Sbjct: 497 HQFRHTYAVKMLNSGADFFTVQQLLAHSSPEMTLVYARLLDTTKRKVFEEA 547 >gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 407 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|29347857|ref|NP_811360.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253572434|ref|ZP_04849836.1| integrase [Bacteroides sp. 1_1_6] gi|29339759|gb|AAO77554.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251837849|gb|EES65938.1| integrase [Bacteroides sp. 1_1_6] Length = 403 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + + H RHSF T ++++G + SI ++GH+ +++TQ+Y V +++ D Sbjct: 335 NLSYHMARHSFGTLMMTSGIPIESIAKMMGHTNINSTQVYAQVTDQKISSDMDWLMKRRK 394 Query: 62 QKD 64 +KD Sbjct: 395 RKD 397 >gi|330817073|ref|YP_004360778.1| integrase family protein [Burkholderia gladioli BSR3] gi|327369466|gb|AEA60822.1| integrase family protein [Burkholderia gladioli BSR3] Length = 578 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560 >gi|303243919|ref|ZP_07330259.1| integrase family protein [Methanothermococcus okinawensis IH1] gi|302485855|gb|EFL48779.1| integrase family protein [Methanothermococcus okinawensis IH1] Length = 291 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H LRH+F T +G +L+ + ++GHS ++ T Y + + M ++T I Sbjct: 228 VKVTPHVLRHTFGTLACKHGMNLQVLSKLMGHSSMAITSKYLHPDRDTMKNDLNKTMSRI 287 Query: 61 TQK 63 + Sbjct: 288 FKD 290 >gi|228470899|ref|ZP_04055744.1| integrase [Porphyromonas uenonis 60-3] gi|228307296|gb|EEK16310.1| integrase [Porphyromonas uenonis 60-3] Length = 160 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H R++F T L G + SI ++GHS +++TQIY V +++ D+ Sbjct: 88 PLTWHCARYTFGTLTLEAGVPIESIAKMMGHSSIASTQIYAQVTDQKIARDMDR 141 >gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] Length = 476 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEI 52 H LRH+FAT L NG D++++ +++GH TT IY+++ + Sbjct: 321 KVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHITDTMQRQA 372 >gi|152983365|ref|YP_001354856.1| integrase [Janthinobacterium sp. Marseille] gi|151283442|gb|ABR91852.1| integrase [Janthinobacterium sp. Marseille] Length = 325 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 27/39 (69%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNV 44 H+ RH+ AT LL +G +L ++ ILGH+++ TT Y ++ Sbjct: 258 HSFRHTLATRLLRSGMNLYEVKEILGHAKIETTMTYAHL 296 >gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 387 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA ++ D+ ++ +LGH ++ T+IYT V E + Sbjct: 330 TFHCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEVLDNSKKEAMEA 381 >gi|302346798|ref|YP_003815096.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150347|gb|ADK96608.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 421 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395 >gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4] Length = 306 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + +AHT RH+FA L G D+ ++Q +L HS L T+ Y ++ + E D+ +P Sbjct: 243 VRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERYLSLWGTALREQNDKFNPLN 302 Query: 61 T 61 + Sbjct: 303 S 303 >gi|218133921|ref|ZP_03462725.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC 43243] gi|217991296|gb|EEC57302.1| hypothetical protein BACPEC_01810 [Bacteroides pectinophilus ATCC 43243] Length = 413 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ-TH 57 + H LRH+F + N +L+ IQSI+GH+ + TT IY V + E H Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQEAIQNLAH 408 >gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B] gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B] Length = 335 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H R + AT LL+ G + +Q ILGH+ +TTQIY ++ + + Y + Sbjct: 280 VHTHKFRRTQATRLLNQGMRIEGVQGILGHTTPTTTQIYAQLSQENLKNEYRR 332 >gi|23464983|ref|NP_695586.1| phage family integrase/recombinase protein [Bifidobacterium longum NCC2705] gi|23325582|gb|AAN24222.1| probable phage-family integrase/recombinase protein [Bifidobacterium longum NCC2705] Length = 276 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 H+LRH +AT + DL + +LGHS + TTQIY + R+ Sbjct: 221 PHSLRHRYATRMYETTHDLLLVSKLLGHSSVETTQIYVAMPDSRLR 266 >gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679] gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679] Length = 378 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|265763793|ref|ZP_06092361.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256401|gb|EEZ27747.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 387 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +A T RH+FAT L D+ ++Q +LGHS L T IY +V + E Sbjct: 328 KVSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESKQE 377 >gi|296163716|ref|ZP_06846430.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886037|gb|EFG65941.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 418 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH+ A+ +L NG L+ I +L H ++TT IY V+ +R+ + Sbjct: 363 HLLRHTAASRMLGNGASLKDIADVLRHRSINTTMIYAKVDFRRLAAVV 410 >gi|291515621|emb|CBK64831.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 410 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 339 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITAQKISQDME 393 >gi|149916283|ref|ZP_01904803.1| phage integrase [Roseobacter sp. AzwK-3b] gi|149809737|gb|EDM69589.1| phage integrase [Roseobacter sp. AzwK-3b] Length = 59 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 33/49 (67%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHS+A+ L++ G + +Q +LGH+ ++TTQ Y ++ S+R+ E Sbjct: 2 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASERLHETVK 50 >gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 376 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 + H LRH+FAT + G +++Q +LGHS + T +Y + + + D Sbjct: 316 SMHILRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEKKKEID 367 >gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606] gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606] Length = 407 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P++ Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEDAINSLPALK 406 >gi|288925568|ref|ZP_06419500.1| integrase [Prevotella buccae D17] gi|288337506|gb|EFC75860.1| integrase [Prevotella buccae D17] Length = 411 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T HT RH+ AT + L+NG + ++ +LGH+ + TTQIY + ++ Sbjct: 341 EITWHTSRHTMATEICLTNGVPIETLSKMLGHTNIRTTQIYAKITHEK 388 >gi|260655607|ref|ZP_05861093.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Jonquetella anthropi E3_33 E1] gi|260629660|gb|EEX47854.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Jonquetella anthropi E3_33 E1] Length = 391 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH FA+ L+ G DL +++ +LGHS L T Y ++ ++ + Sbjct: 340 HDLRHDFASKLVMAGVDLNTVRELLGHSTLEMTLRYAHLAPSKLSAAIE 388 >gi|240147142|ref|ZP_04745743.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] gi|257200666|gb|EEU98950.1| site-specific recombinase, phage integrase family [Roseburia intestinalis L1-82] Length = 413 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ-TH 57 + H LRH+F + N +L+ IQSI+GH+ + TT IY V + E H Sbjct: 353 SCHHLRHTFCSRFCENETNLKVIQSIMGHANIETTMDIYAEVTDTKKQEAIQNLAH 408 >gi|153811011|ref|ZP_01963679.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174] gi|149832899|gb|EDM87982.1| hypothetical protein RUMOBE_01402 [Ruminococcus obeum ATCC 29174] Length = 407 Score = 66.1 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 +AH LRH+F T +G D++S+Q I+GH+ ++ T Y +V+ R+ +T Sbjct: 346 ISAHILRHTFCTRAAESGVDVKSLQYIMGHADITMTMERYNHVDEVRVQNEMSKT 400 >gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071] gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071] Length = 378 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein [Fusobacterium sp. 3_1_5R] Length = 346 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H R + AT L G L ++ +L H + TT IYT +N R+ + +++ Sbjct: 291 VHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYTTLNKDRLKDKHNRF 344 >gi|167751073|ref|ZP_02423200.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702] gi|167655991|gb|EDS00121.1| hypothetical protein EUBSIR_02058 [Eubacterium siraeum DSM 15702] Length = 244 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 + H LRH+F T N +L+ IQ I+GH+ ++TT IY + ME Sbjct: 184 SCHHLRHTFCTRFCENETNLKIIQEIMGHADITTTMDIYNEATKDKKME 232 >gi|332826344|gb|EGJ99187.1| hypothetical protein HMPREF9455_00511 [Dysgonomonas gadei ATCC BAA-286] Length = 410 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+F T L +S G + ++ ++GH+ + TTQIY + +++ + + Sbjct: 342 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDME 393 >gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4] gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4] Length = 315 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T + LRH+ AT LL G ++ LGH LSTT+ Y + + + +D+ P Sbjct: 242 VKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRYIQLVEEDLRREHDRASPVA 301 Query: 61 T 61 Sbjct: 302 R 302 >gi|218905654|ref|YP_002453488.1| transposase B [Bacillus cereus AH820] gi|218537857|gb|ACK90255.1| transposase B [Bacillus cereus AH820] Length = 637 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RH+ T +++NG +Q LGH T Y ++ + + + + + Sbjct: 464 FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFIKF 519 >gi|290959673|ref|YP_003490855.1| hypothetical protein SCAB_52771 [Streptomyces scabiei 87.22] gi|260649199|emb|CBG72313.1| putative phage integrase (fragment) [Streptomyces scabiei 87.22] Length = 145 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T H LRH+ A+ +++G D+ +Q++LGH + T Y ++ R+ E+ + H Sbjct: 52 LKVTPHKLRHTAASLAIASGADVNVVQTMLGHKSATLTLDTYGHLFPDRLDEVSKKMHKR 111 Query: 60 ITQK 63 +++ Sbjct: 112 RSKQ 115 >gi|291294978|ref|YP_003506376.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290469937|gb|ADD27356.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 251 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHS A LL G L +Q LGH L TTQIY + +++ E Y + Sbjct: 192 VYPHLLRHSVAQILLDRGMPLEQLQKFLGHRDLKTTQIYAESSLEQVGESYRR 244 >gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6] gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6] Length = 348 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 AH LRH F T L + IQ+++GH+ T++IYT+++ ++M + D+ +P Sbjct: 272 AHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTHISMRKMTNVLDKGNPLGK 330 >gi|237724706|ref|ZP_04555187.1| integrase [Bacteroides sp. D4] gi|229436901|gb|EEO46978.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 371 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H+ R +FAT + G D+R+IQS++ H ++TTQ Y V E ++ IT Sbjct: 311 NITFHSYRRTFATLQGAAGTDIRTIQSMMAHKSITTTQRYMKVVDSNKREASNK----IT 366 Query: 62 QKDKK 66 K K+ Sbjct: 367 LKRKE 371 >gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] Length = 297 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH+ AT L+ G + ++Q +LGH+ + TTQIY+ + S ++ Sbjct: 220 ITYHVSRHTCATLLIHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNA 273 >gi|188591811|ref|YP_001796410.1| Phage integrase [Cupriavidus taiwanensis] gi|170939206|emb|CAP64249.1| Phage integrase [Cupriavidus taiwanensis LMG 19424] Length = 390 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 + H LRHS A+H G D+R IQ L H+ + TT IY + R H Sbjct: 324 ASTHWLRHSAASHQADAGTDIRFIQKNLRHASIETTGIYLHAEDDR-----RHAH 373 >gi|310828816|ref|YP_003961173.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740550|gb|ADO38210.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 379 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H R ++AT L D++ +QS+LGHS ++TT IYT+V+ + + Sbjct: 319 HDFRDTYATRLYEKTKDIKMVQSLLGHSDIATTANIYTHVSLEEQSK 365 >gi|300117726|ref|ZP_07055504.1| Tn554-related, transposase B [Bacillus cereus SJ1] gi|298724893|gb|EFI65557.1| Tn554-related, transposase B [Bacillus cereus SJ1] Length = 701 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ ++Q +L H+ T Y + + + ++ Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 550 >gi|284008020|emb|CBA74104.1| phage integrase [Arsenophonus nasoniae] Length = 318 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 30/46 (65%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 T H LR S+A+ LL NG D+ +++ LGH+ + TTQ Y + KR+ Sbjct: 260 TPHDLRRSYASLLLENGEDILTVKEALGHASVVTTQQYDKRSIKRL 305 >gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] Length = 383 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+ A+ L G ++ +Q+ LGH TT IYT+V K+ + ++ Sbjct: 322 KITVHGFRHTSASMLFEAGATIKEVQTRLGHEDAQTTLNIYTHVTKKQDNQAAEK 376 >gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 337 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 277 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 330 >gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] Length = 389 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH++AT L G R++Q +LGHS +S T YT+V + + Sbjct: 328 FHDLRHTYATRLFELGEQARTVQELLGHSDVSVTLNTYTHVLDDMKEKAVSK 379 >gi|126452367|ref|YP_001068206.1| phage integrase family site specific recombinase [Burkholderia pseudomallei 1106a] gi|254186411|ref|ZP_04892928.1| integrase [Burkholderia pseudomallei Pasteur 52237] gi|126226009|gb|ABN89549.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 1106a] gi|157934096|gb|EDO89766.1| integrase [Burkholderia pseudomallei Pasteur 52237] Length = 172 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 119 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 171 >gi|152985240|ref|YP_001350479.1| phage integrase family site specific recombinase [Pseudomonas aeruginosa PA7] gi|150960398|gb|ABR82423.1| site-specific recombinase, phage integrase family [Pseudomonas aeruginosa PA7] Length = 404 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+ L+ G L +++ +LGHS ++ T Y ++ + Sbjct: 354 HDLRHTFASKLVMAGVPLNTVRELLGHSDITMTLRYAHLAPDSKAAAVE 402 >gi|325856178|ref|ZP_08172003.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325483649|gb|EGC86616.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 406 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQIY V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQIYAVVSSERIHRDMQE 393 >gi|319654362|ref|ZP_08008449.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2] gi|317393861|gb|EFV74612.1| hypothetical protein HMPREF1013_05069 [Bacillus sp. 2_A_57_CT2] Length = 388 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 T H+ RH FA G DL +I+ LGHS + TTQIY ++M+ + H Sbjct: 325 PITPHSFRHGFALISADQGADLLTIKESLGHSDIKTTQIYLQ---RKMLRKNNAAH 377 >gi|295116277|emb|CBL37124.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 275 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H+LRHSFA+ + NG D +++ ILGHS + T IY + + ++ D+ Sbjct: 216 PVNIHSLRHSFASKWIENGFDSKALSEILGHSSVKITMDIYVHSSMRQKKSYMDR 270 >gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87] gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87] Length = 410 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H RH+FAT + L+NG + ++ +LGH++L+TTQIY V K++ + Sbjct: 348 TFHIARHTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKVKD 396 >gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] Length = 354 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 294 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 347 >gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2] gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2] Length = 423 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ + D Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVD 396 >gi|238791280|ref|ZP_04634919.1| Integrase [Yersinia intermedia ATCC 29909] gi|238729413|gb|EEQ20928.1| Integrase [Yersinia intermedia ATCC 29909] Length = 291 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 T H LR +F T LL G D+ +++ + GHS +STT Y + Sbjct: 236 TPHDLRRTFITQLLEQGADINTVRQLAGHSDISTTARYDH 275 >gi|299141756|ref|ZP_07034891.1| integrase [Prevotella oris C735] gi|298576607|gb|EFI48478.1| integrase [Prevotella oris C735] Length = 406 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ + Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQK 393 >gi|224542974|ref|ZP_03683513.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM 15897] gi|224524112|gb|EEF93217.1| hypothetical protein CATMIT_02168 [Catenibacterium mitsuokai DSM 15897] Length = 354 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H R + AT L G + +Q +LGH ++ TT IY ++K + +D+ Sbjct: 299 NIHPHRFRRTAATTALRKGMPIEQVQLMLGHEQIDTTMIYAKTDTKSVKYSHDKY 353 >gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO] gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO] Length = 375 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 312 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 366 >gi|295105004|emb|CBL02548.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 384 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H LRH+F T++ G D++S+Q ++GHS S T +YT+ + + + ++Q Sbjct: 326 VTPHVLRHTFCTNVQQAGLDVKSLQYLMGHSNASVTLDVYTHSSFESVERAFEQ 379 >gi|270339834|ref|ZP_06006153.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333598|gb|EFA44384.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 381 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 302 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 355 >gi|258543088|ref|YP_003188521.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256634166|dbj|BAI00142.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01] gi|256637226|dbj|BAI03195.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-03] gi|256640278|dbj|BAI06240.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-07] gi|256643335|dbj|BAI09290.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-22] gi|256646390|dbj|BAI12338.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-26] gi|256649443|dbj|BAI15384.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-32] gi|256652429|dbj|BAI18363.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655487|dbj|BAI21414.1| phage DNA recombinase [Acetobacter pasteurianus IFO 3283-12] Length = 291 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 29/43 (67%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVN 45 +AH LRH+FA+H L G + +Q+ LGHS L+TT Y++ + Sbjct: 239 VSAHWLRHAFASHQLDAGQPVHWVQAQLGHSSLATTTRYSHAS 281 >gi|255284546|ref|ZP_05349101.1| phage integrase [Bryantella formatexigens DSM 14469] gi|255264913|gb|EET58118.1| phage integrase [Bryantella formatexigens DSM 14469] Length = 313 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 T H RH+FAT + G + +++ILGHS L+ T +Y++V + ++ Sbjct: 255 ITPHVFRHTFATRAIEAGMQPQVLKTILGHSSLAMTMDLYSHVLPDTKADEMEK 308 >gi|160903194|ref|YP_001568775.1| integrase family protein [Petrotoga mobilis SJ95] gi|160360838|gb|ABX32452.1| integrase family protein [Petrotoga mobilis SJ95] Length = 306 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 31/46 (67%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS 46 ++ T H LRH+ A LL++G +L ++ ILGH+ +STT IY +S Sbjct: 253 INATPHALRHTCAKRLLNSGKNLEEVRYILGHTTISTTGIYVRSDS 298 >gi|187928906|ref|YP_001899393.1| integrase family protein [Ralstonia pickettii 12J] gi|187725796|gb|ACD26961.1| integrase family protein [Ralstonia pickettii 12J] Length = 566 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 509 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 549 >gi|72383982|ref|YP_293336.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia eutropha JMP134] gi|72123325|gb|AAZ65479.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ralstonia eutropha JMP134] Length = 616 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 26/44 (59%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 HTLRH+FATH ++N +Q +LGH+ L TT +Y R Sbjct: 560 PHTLRHTFATHAVANEMPTDVLQRLLGHASLQTTSLYVRAERAR 603 >gi|170700906|ref|ZP_02891892.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170134184|gb|EDT02526.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 640 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 582 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 622 >gi|156740071|ref|YP_001430200.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|156231399|gb|ABU56182.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 337 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHP 58 + T HT RH AT LL+ G L + +ILGH+ T Q Y +++ E++DQ P Sbjct: 275 TVTPHTFRHFVATWLLNEGAQLSEVSAILGHANTRITEQYYARHTDEQLQELHDQFAP 332 >gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB] gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB] Length = 421 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H+LRH+ A+ L++NG +L ++ ILGH+ T Y++ + + + Sbjct: 345 KITFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRYSHPAADSIRQAM 396 >gi|29377419|ref|NP_816573.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|29344886|gb|AAO82643.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] Length = 381 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 S T H RH+ A+ LL +G ++ + LGH+ + T +IY++V + + D+ Sbjct: 320 SITPHHFRHTHASLLLQSGVPIKEVAERLGHTSTAITDRIYSHVMPEEKEKTADKF 375 >gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319] gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319] Length = 421 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 342 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 395 >gi|229021360|ref|ZP_04177990.1| Transposition regulatory protein TnpB [Bacillus cereus AH1273] gi|229024664|ref|ZP_04181109.1| Transposition regulatory protein TnpB [Bacillus cereus AH1272] gi|228736729|gb|EEL87279.1| Transposition regulatory protein TnpB [Bacillus cereus AH1272] gi|228739925|gb|EEL90292.1| Transposition regulatory protein TnpB [Bacillus cereus AH1273] Length = 415 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ ++Q +L H+ T Y + + + ++ Sbjct: 216 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 264 >gi|299142713|ref|ZP_07035842.1| integrase [Prevotella oris C735] gi|298575742|gb|EFI47619.1| integrase [Prevotella oris C735] Length = 333 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 28/54 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH+ AT LL G L IQ ILGH + TTQ+Y+ V + + + Sbjct: 278 ITFHCARHTCATVLLGKGVSLPIIQHILGHQSIKTTQVYSAVKDSTINKEIRRA 331 >gi|298245094|ref|ZP_06968900.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552575|gb|EFH86440.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 396 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H LRH+ +T L+ G ++++Q +LGHS++STT IY +V K D+ Sbjct: 337 PHELRHNVSTALIEAGVSIKTVQEMLGHSKISTTMDIYGHVTPKMKQNAADE 388 >gi|210612450|ref|ZP_03289308.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787] gi|210151558|gb|EEA82565.1| hypothetical protein CLONEX_01509 [Clostridium nexile DSM 1787] Length = 415 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN E+Y Sbjct: 357 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 411 >gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 314 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306 >gi|253682480|ref|ZP_04863277.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] gi|253562192|gb|EES91644.1| site-specific recombinase, phage integrase family [Clostridium botulinum D str. 1873] Length = 184 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 H LRH+ AT LL G +++ IQ LGHS+L+TT Y++V K Sbjct: 120 FHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTYSHVTEK 163 >gi|226312180|ref|YP_002772074.1| site-specific tyrosine recombinase XerS [Brevibacillus brevis NBRC 100599] gi|226095128|dbj|BAH43570.1| putative recombinase [Brevibacillus brevis NBRC 100599] Length = 399 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHSFAT L D +Q+ LGHS++ TT Y +V + + ++T Sbjct: 346 SVHKLRHSFATQFLRLNPDPHQLQAQLGHSKIETTMQYAHVLEDALGKAVNRT 398 >gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 291 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 +AH LRH++A+H+ NG +Q LGH+ L+TT Y++ Sbjct: 238 VSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSH 278 >gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] Length = 371 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 308 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 362 >gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 372 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 309 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 363 >gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 392 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H +RHSFAT L+ G D++++ +LGH+ + T Y + + + Sbjct: 331 ITFHGIRHSFATRLIEQGVDVKTVSQLLGHTDVKITLNRYVHSTDDTKKDAIHK 384 >gi|239917481|ref|YP_002957039.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281414028|ref|ZP_06245770.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239838688|gb|ACS30485.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 396 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H+LRH+FA+ L +G + +Q LGH L TT ++Y ++ D Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHLLLDAQRAAVDA 387 >gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis] gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis] Length = 314 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 255 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 306 >gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269] gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|255013306|ref|ZP_05285432.1| integrase [Bacteroides sp. 2_1_7] Length = 311 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ + Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295 >gi|302345418|ref|YP_003813771.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149232|gb|ADK95494.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 375 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 + T H RHSFAT L++ + ++ +LGH + TTQIY V + Sbjct: 316 NLTFHIARHSFATLALAHDVPIENVARMLGHQNIRTTQIYAKVLKSTI 363 >gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 311 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ + Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295 >gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13] gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13] gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] Length = 290 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG + + +Q +LG+ ++ +Y +N++++ IY + HP Sbjct: 236 TFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHPRA 290 >gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001] gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006] gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007] gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008] gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009] gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010] gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011] gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011] Length = 295 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRH +AT +LR++Q +LGH+ + TT+ YT + + Sbjct: 241 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 288 >gi|229492025|ref|ZP_04385839.1| phage integrase family protein [Rhodococcus erythropolis SK121] gi|229321049|gb|EEN86856.1| phage integrase family protein [Rhodococcus erythropolis SK121] Length = 246 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LR + ATH G DL +IQ +LGH + +T Y ++ + + Y + Sbjct: 179 SPHALRRACATHNYERGVDLVAIQQLLGHWTVGSTMRYVRPSATFIEDAYRRA 231 >gi|258438228|ref|ZP_05689512.1| transposase B [Staphylococcus aureus A9299] gi|58577495|emb|CAG29648.1| transposase B [Staphylococcus lentus] gi|124001376|emb|CAL64014.1| transposase B [Staphylococcus warneri] gi|257848272|gb|EEV72263.1| transposase B [Staphylococcus aureus A9299] Length = 639 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RH+ T +++NG +Q LGH T Y ++ + + + + + Sbjct: 466 FRFHAHAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 521 >gi|315641396|ref|ZP_07896470.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315482832|gb|EFU73354.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 167 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T H RH+ + L +G ++ +Q LGH+ + TT IYT+V ++ E ++ Sbjct: 81 ITPHGFRHTHCSLLFESGASIKEVQVRLGHTDIKTTMDIYTHVTKRQTEETANRF 135 >gi|255994002|ref|ZP_05427137.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] gi|255993670|gb|EEU03759.1| site-specific recombinase, phage integrase family [Eubacterium saphenum ATCC 49989] Length = 324 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 + H RH+ + L S G D+ ++Q LGHS L TT Q+Y +V D+ Sbjct: 264 ISPHGFRHTHCSLLFSAGVDIPTVQKRLGHSDLKTTMQVYNHVYRDDEFRALDKY 318 >gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGH+ L T+ YT ++ E + P + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTR-AVDKLKEEAINSLPELK 406 >gi|228942827|ref|ZP_04105346.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952547|ref|ZP_04114624.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976709|ref|ZP_04137133.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783010|gb|EEM31165.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228807158|gb|EEM53700.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816841|gb|EEM62947.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943508|gb|AEA19401.1| Transposase A from transposon Tn554 [Bacillus thuringiensis serovar chinensis CT-43] Length = 365 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT--H 57 ++ TAHTLRH+ AT L G D IQ +LGH+++ TT +Y + + + + + +D+ H Sbjct: 301 INFTAHTLRHTCATQLYDLGMDAGIIQKLLGHAQVQTTLNMYIHPSEETIRKHWDEAQQH 360 Query: 58 PSITQ 62 + + Sbjct: 361 RRMRK 365 >gi|221195298|ref|ZP_03568354.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] gi|221185201|gb|EEE17592.1| DNA integration/recombination/invertion protein [Atopobium rimae ATCC 49626] Length = 401 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 T HTLRH+ A+ L+NG DL+++ LGH+ +TT +IY +V R Sbjct: 332 ITFHTLRHTHASWCLANGVDLKTLSERLGHADEATTLRIYAHVLPGR 378 >gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 392 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK 47 + T H+ RH+ + L+ G ++ IQ LGH+ + TT IY ++ Sbjct: 328 NITPHSFRHTHTSLLIEAGVGIKEIQQRLGHTDIETTMNIYAHMTKN 374 >gi|296165947|ref|ZP_06848413.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898700|gb|EFG78240.1| phage integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 349 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH++ T L + G DL ++++++GH TT Y +++ +++ Y Sbjct: 287 VRPHRLRHTYGTELSAAGIDLLALRALMGHVSPETTARYVHLSIEQLAAEYGAA 340 >gi|218134836|ref|ZP_03463640.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC 43243] gi|217990221|gb|EEC56232.1| hypothetical protein BACPEC_02739 [Bacteroides pectinophilus ATCC 43243] Length = 136 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 H LRH++ ++LL+NG + +Q +LGHS +STT IY + K + Sbjct: 76 HFHKLRHTYTSNLLANGAAPKDVQELLGHSDVSTTMNIYAHSTRKAKRD 124 >gi|167921000|ref|ZP_02508091.1| putative bacteriophage integrase [Burkholderia pseudomallei BCC215] Length = 222 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 169 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 221 >gi|44004340|ref|NP_982008.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|42741406|gb|AAS44851.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] Length = 684 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ ++Q +L H+ T Y + + + ++ Sbjct: 485 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 533 >gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482] gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482] Length = 200 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT ++ E + P + Sbjct: 142 ISWHLARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTR-AVDKLKEEAINSLPELK 199 >gi|260904385|ref|ZP_05912707.1| phage integrase family protein [Brevibacterium linens BL2] Length = 160 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQK 63 H LRH+F T L G DL +Q++LGH+ + TT Y ++ + +D I + Sbjct: 99 HPHALRHTFGTVLAEAGVDLAVMQALLGHAHVDTTARYVHLAPVHVKGEFDAARERIRTQ 158 >gi|221198562|ref|ZP_03571607.1| phage integrase family protein [Burkholderia multivorans CGD2M] gi|221207791|ref|ZP_03580798.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221172288|gb|EEE04728.1| phage integrase family protein [Burkholderia multivorans CGD2] gi|221181013|gb|EEE13415.1| phage integrase family protein [Burkholderia multivorans CGD2M] Length = 575 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + + + Sbjct: 517 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQMASA 570 >gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 T H RH+ AT L ++G D++ +Q+ LGHS + TT IYT+ + +I D+ Sbjct: 320 PITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQDKQDKIGDEF 375 >gi|302388220|ref|YP_003824042.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198848|gb|ADL06419.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 368 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50 H +RH+FAT L G D+++I +LGHS +S T +Y++ ++ Sbjct: 311 FHAIRHTFATRALEMGVDVKTISELLGHSSVSITLNVYSHSLMEQKK 357 >gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4] gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4] Length = 311 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T + LRH+FA L D ++Q +LGH LS T+ Y + + +I+++ P + Sbjct: 236 VKVTPYGLRHTFALEFLKASNDPFALQRVLGHRDLSMTRRYVRYLQEDVRQIHEKASPVV 295 Query: 61 T 61 Sbjct: 296 K 296 >gi|167464569|ref|ZP_02329658.1| integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 321 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSFAT + L N DL Q LGH+ TTQIY ++ K M E D+ Sbjct: 267 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 317 >gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973] gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] Length = 321 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 T H LRH+ AT L G L+ +Q LGHS ++TTQ Y + +++ + Sbjct: 261 TPHWLRHTNATLALLQGASLQQVQESLGHSHINTTQRYLH-TVEQIKKA 308 >gi|326382424|ref|ZP_08204116.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199154|gb|EGD56336.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 377 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR----MMEIYDQT 56 H+ R S+ATHLL +G D R +Q +GH STT IY + + + + D+T Sbjct: 309 HSFRRSYATHLLEDGWDPRFVQDQMGHEHASTTGIYQFTSDEFRRSTLRSVLDRT 363 >gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 311 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ + Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295 >gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] Length = 378 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 369 >gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162] gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317] gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317] gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162] Length = 361 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 298 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 352 >gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC 29176] gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC 29176] Length = 411 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 +AH+LRH+F T L +L+ IQSI+GH + TT IY ++ E ++ Sbjct: 351 SAHSLRHTFCTRLCERETNLKIIQSIMGHKDIQTTMDIYAEATEEKKQETFEH 403 >gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] Length = 311 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ + Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295 >gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] Length = 367 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 311 ITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAEK 363 >gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302] gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302] Length = 407 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5] gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5] Length = 395 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS---KRMMEIYDQ 55 T H RH+FAT + G + + +LGHS L TTQIY + +R ME +D+ Sbjct: 338 KLTCHVARHTFATVSIILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVKEREMEKWDK 394 >gi|254441509|ref|ZP_05055002.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198251587|gb|EDY75902.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 366 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ + D Sbjct: 291 HDLRHTFASLLVSGGASLEMIGRLLGHSQMQTTQRYAHLMDSPLRAGVD 339 >gi|161522422|ref|YP_001585351.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189348702|ref|YP_001941898.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160345975|gb|ABX19059.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189338840|dbj|BAG47908.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 575 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 517 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 557 >gi|221215737|ref|ZP_03588698.1| phage integrase family protein [Burkholderia multivorans CGD1] gi|221164439|gb|EED96924.1| phage integrase family protein [Burkholderia multivorans CGD1] Length = 575 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 517 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 557 >gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101] gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101] Length = 290 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHPSI 60 T RHSFA HLL NG + + +Q +LG+ ++ +Y +N++++ IY + HP Sbjct: 236 TFRHSFAVHLLQNGANAKVVQELLGNQVMTYIDMYYDIINNEKINNIYRKAHPRA 290 >gi|160945662|ref|ZP_02092888.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii M21/2] gi|158443393|gb|EDP20398.1| hypothetical protein FAEPRAM212_03193 [Faecalibacterium prausnitzii M21/2] Length = 392 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 H LRH+FAT L G D++++ +LGH+ + T Q Y + + R ++ Sbjct: 322 VRPHALRHTFATTCLQAGCDVKTLSELLGHANANITLQRYVHSDLTRKRREMNR 375 >gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 365 Score = 65.7 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 HTLRH+FA+HL NG + +IQ ++ H ++ T Y + E Sbjct: 313 HTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGREAVR 361 >gi|330937767|gb|EGH41639.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. pisi str. 1704B] Length = 390 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 1 MSTTAHTLRHSFATHLL-------SNGGD-LRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 + H LRH++ATH L NG D L +Q LGHS + TT +Y ++ ++ E Sbjct: 316 IEVHTHMLRHTYATHTLVNLQRTPQNGLDPLVFLQRQLGHSSIQTTMVYLHLINEMADEA 375 Query: 53 YDQT 56 Sbjct: 376 VLAY 379 >gi|329954699|ref|ZP_08295759.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328527240|gb|EGF54244.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 410 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 342 STHVARHTNATTVLLSHGVPIETVSRLLGHTNIKTTQIYAKITNQKISQDME 393 >gi|42782203|ref|NP_979450.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196042844|ref|ZP_03110083.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196047844|ref|ZP_03115022.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|228950294|ref|ZP_04112470.1| Transposition regulatory protein TnpB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229112910|ref|ZP_04242440.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15] gi|42738128|gb|AAS42058.1| Tn554-related, transposase B [Bacillus cereus ATCC 10987] gi|196021100|gb|EDX59829.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196026328|gb|EDX64996.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|228670541|gb|EEL25855.1| Transposition regulatory protein TnpB [Bacillus cereus Rock1-15] gi|228809381|gb|EEM55826.1| Transposition regulatory protein TnpB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 701 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 26/49 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ ++Q +L H+ T Y + + + ++ Sbjct: 502 HQFRHTYAVKLLNGGADILTVQELLAHASPEMTLRYAKLLDETKRKAFE 550 >gi|326943669|gb|AEA19562.1| site-specific tyrosine recombinase XerS [Bacillus thuringiensis serovar chinensis CT-43] Length = 332 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 274 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 325 >gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] Length = 325 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H R + AT L G L ++ +L H + TT IYT +N R+ + +++ Sbjct: 270 VHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYTTLNKDRLKDKHNRF 323 >gi|295114677|emb|CBL35524.1| Site-specific recombinase XerD [butyrate-producing bacterium SM4/1] Length = 345 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH+ A HL +G DL I LGH ++ TT IY +++ + ++ Sbjct: 265 VHPHLWRHTRAMHLYQHGMDLTMISQWLGHKQVETTLIYAYADTEAKRKAIEKA 318 >gi|254438184|ref|ZP_05051678.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253630|gb|EDY77944.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 419 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDK 65 H LRH+FA+ L+S G L I +LGHS++ TTQ Y ++ + D + + K Sbjct: 348 HDLRHTFASLLVSGGASLEMIGKLLGHSQMQTTQRYAHLMDSPLRAGVDAVASAFRPRPK 407 >gi|226356242|ref|YP_002785982.1| integrase [Deinococcus deserti VCD115] gi|226318232|gb|ACO46228.1| putative Integrase [Deinococcus deserti VCD115] Length = 444 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM 50 + H LRHS T+L+S G D S+ ++LGH+++STT IY + +++ Sbjct: 348 SPHALRHSTGTYLISRGHDPVSVAALLGHAQVSTTLNIYAHALPEKLR 395 >gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] Length = 387 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 T HTLRH+FAT + G + +++Q +LGH L T +Y +V + ++ Sbjct: 327 PFTLHTLRHTFATRAIECGMNPKTLQKLLGHGTLQMTMDLYCHVTEDTLFLEMEKF 382 >gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 326 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 STT H+LRH+FAT L + DL + +LGH ++TTQIY ++++ DQ Sbjct: 264 STTPHSLRHTFATRYLARHPHDLVGLARLLGHRSITTTQIYIQPTAEQLAARVDQ 318 >gi|153811898|ref|ZP_01964566.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174] gi|149832032|gb|EDM87117.1| hypothetical protein RUMOBE_02291 [Ruminococcus obeum ATCC 29174] Length = 388 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 + H LRH+F T N +++ IQ+++GH+ + TT IY V + E ++ Sbjct: 328 SCHHLRHTFCTRFCENETNIKVIQAVMGHANIETTMDIYAEVTDMKKTEAIEK 380 >gi|10956379|ref|NP_052828.1| site-specific tyrosine recombinase XerS [Bacillus anthracis] gi|21392873|ref|NP_652953.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. A2012] gi|47566509|ref|YP_022461.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. 'Ames Ancestor'] gi|165873427|ref|ZP_02218026.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167636785|ref|ZP_02395068.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167642201|ref|ZP_02400423.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170689789|ref|ZP_02880959.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170709646|ref|ZP_02900046.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177656331|ref|ZP_02937224.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190569527|ref|ZP_03022388.1| integrase/recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227811617|ref|YP_002811628.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229599771|ref|YP_002860851.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254687687|ref|ZP_05151543.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. CNEVA-9066] gi|254739175|ref|ZP_05196877.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Western North America USA6153] gi|254744974|ref|ZP_05202651.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Kruger B] gi|254762469|ref|ZP_05214309.1| site-specific tyrosine recombinase XerS [Bacillus anthracis str. Australia 94] gi|301068233|ref|YP_003787004.1| tyrosine recombinase [Bacillus anthracis CI] gi|4894348|gb|AAD32436.1| pXO1-132 [Bacillus anthracis] gi|20520260|gb|AAM26142.1| integrase/recombinase, phage integrase family, (pXO1-132) [Bacillus anthracis str. A2012] gi|47552324|gb|AAT35489.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|164710802|gb|EDR16380.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167509884|gb|EDR85308.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167527711|gb|EDR90550.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170125607|gb|EDS94534.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170666164|gb|EDT16957.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172079691|gb|EDT64808.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190559306|gb|EDV13330.1| integrase/recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227007971|gb|ACP17713.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229269390|gb|ACQ51026.1| integrase/recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|300379318|gb|ADK08221.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 361 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354 >gi|78060063|ref|YP_366638.1| Phage integrase [Burkholderia sp. 383] gi|77964613|gb|ABB05994.1| Phage integrase [Burkholderia sp. 383] Length = 578 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560 >gi|60681762|ref|YP_211906.1| putative phage integrase [Bacteroides fragilis NCTC 9343] gi|60493196|emb|CAH07978.1| putative phage integrase [Bacteroides fragilis NCTC 9343] Length = 387 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +A T RH+FAT L D+ ++Q +LGHS L T IY +V + E Sbjct: 328 KVSAKTGRHTFATIFLKKTKDVATLQKLLGHSNLKETMIYAHVLDESKQE 377 >gi|319937079|ref|ZP_08011488.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1] gi|319807857|gb|EFW04442.1| hypothetical protein HMPREF9488_02322 [Coprobacillus sp. 29_1] Length = 383 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 ++ H LRH++AT L+ +G + ++ ++ HS +STT IYT+ ++ + D Sbjct: 322 INFHYHMLRHTYATELVMSGVNPVVVKDLMRHSDISTTWSIYTHPQNEDQRKALDN 377 >gi|28465873|dbj|BAC57490.1| transposaseB [Staphylococcus aureus] Length = 630 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RHS T +++NG +Q LGH T Y ++ + + + + Sbjct: 463 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515 >gi|13474970|ref|NP_106607.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|13474971|ref|NP_106531.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025717|dbj|BAB52317.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14025794|dbj|BAB52393.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 407 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHS AT LL G L I +L HS+ +TTQIY V+ + I Sbjct: 351 AHLLRHSLATDLLRRGASLVEIGQLLRHSQPNTTQIYAKVDIAALRAI 398 >gi|253578301|ref|ZP_04855573.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850619|gb|EES78577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 399 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN E+Y Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 395 >gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] Length = 391 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H LRHS A+ L+++G L +Q +LGHS T Y++++ + + + I Sbjct: 327 NFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQGAANSAGDRIK 386 >gi|198275333|ref|ZP_03207864.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135] gi|212691216|ref|ZP_03299344.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855] gi|224026864|ref|ZP_03645230.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM 18228] gi|255007927|ref|ZP_05280053.1| integrase [Bacteroides fragilis 3_1_12] gi|298383989|ref|ZP_06993550.1| integrase [Bacteroides sp. 1_1_14] gi|301311550|ref|ZP_07217477.1| integrase [Bacteroides sp. 20_3] gi|313145638|ref|ZP_07807831.1| integrase [Bacteroides fragilis 3_1_12] gi|198271916|gb|EDY96186.1| hypothetical protein BACPLE_01494 [Bacteroides plebeius DSM 17135] gi|212666448|gb|EEB27020.1| hypothetical protein BACDOR_00707 [Bacteroides dorei DSM 17855] gi|224020100|gb|EEF78098.1| hypothetical protein BACCOPRO_03623 [Bacteroides coprophilus DSM 18228] gi|298263593|gb|EFI06456.1| integrase [Bacteroides sp. 1_1_14] gi|300830636|gb|EFK61279.1| integrase [Bacteroides sp. 20_3] gi|313134405|gb|EFR51765.1| integrase [Bacteroides fragilis 3_1_12] gi|313158703|gb|EFR58091.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 407 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386 >gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 305 Score = 65.3 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 + + HT RH+FA +++ N D+ ++Q +L H LS + Y N + + E D+ +P Sbjct: 243 VRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYVNFGTA-LKEQNDKFNP 299 >gi|295135380|ref|YP_003586056.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983395|gb|ADF53860.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 232 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+FAT + L+NG + S+ +LGH L TTQ Y + +++ E + Sbjct: 140 PLTTHVARHTFATTITLTNGVPIESVSKMLGHKDLRTTQHYAKIVDRKISEDMQNLKAKL 199 Query: 61 TQKDKKN 67 K N Sbjct: 200 EAKKISN 206 >gi|291561494|emb|CBL40293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 399 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN E+Y Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 395 >gi|168208010|ref|ZP_02634015.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] gi|170660693|gb|EDT13376.1| putative integrase/recombinase [Clostridium perfringens E str. JGS1987] Length = 284 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+ RH +A +L+S G L IQ++LGH ++TT IYT + K ++ I ++T Sbjct: 225 KMHPHSFRHFYAKYLISKGIGLDIIQTLLGHENINTTSIYTKSSKKELVSIINRT 279 >gi|167753782|ref|ZP_02425909.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216] gi|167658407|gb|EDS02537.1| hypothetical protein ALIPUT_02066 [Alistipes putredinis DSM 17216] Length = 407 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386 >gi|163733378|ref|ZP_02140821.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|163736004|ref|ZP_02143430.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161390729|gb|EDQ15072.1| phage integrase family protein [Roseobacter litoralis Och 149] gi|161393166|gb|EDQ17492.1| phage integrase family protein [Roseobacter litoralis Och 149] Length = 332 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H+ RH+ A HL++ G D+ I+S LGH L TT Y N + +Q Sbjct: 255 VTPHSFRHATAVHLVAAGVDVTVIRSWLGHVSLETTNHYAQANLETKRRALEQ 307 >gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 319 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT-NVNSKRMMEIYDQTHP 58 + + HT RH+FAT L NG +QS+LGHS L T+ YT ++ S+ ++ + + P Sbjct: 255 VRCSPHTFRHTFATQALINGAGEFEVQSLLGHSTLVMTKRYTASLKSEHAVQEHKKFSP 313 >gi|150016222|ref|YP_001308476.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149902687|gb|ABR33520.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 325 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 7 TLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQKDKK 66 T R++FAT + NGGD+ ++ +LGHS + TT+ Y N+ + Q +P K Sbjct: 255 TFRNTFATMFVRNGGDIYRLKLLLGHSNIKTTERYVNLLPIDFKDDLLQYNPLDILNKNK 314 Query: 67 N 67 N Sbjct: 315 N 315 >gi|288802102|ref|ZP_06407543.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18] gi|288335537|gb|EFC73971.1| LOW QUALITY PROTEIN: integrase [Prevotella melaninogenica D18] Length = 129 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H RH+FAT +S G + S+ +LGH+ + TQIY + +K++ ++ Sbjct: 62 NLTFHMTRHTFATMSISKGVPMESVSKMLGHTNIRITQIYARITNKKVERDMEE 115 >gi|265763441|ref|ZP_06092009.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256049|gb|EEZ27395.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 379 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+H RH+FAT + L+NG + I +LGH+ + TTQ+Y ++ + + +++ Sbjct: 320 KLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHIYQAEVDKEFER 374 >gi|256838368|ref|ZP_05543878.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739287|gb|EEU52611.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 407 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 S + H RH FAT LS G + S+ +LGH+ + TTQ+Y + ++++ Sbjct: 339 SISFHCSRHGFATLALSKGMPIESVSRVLGHTNIVTTQLYAKITTQKL 386 >gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 1 MSTTAHTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 +S H LRH++A++L S+G D+ +++ +LGHS + TQ Y ++ + + Sbjct: 305 ISIRFHDLRHTYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVNGVLKRAV 358 >gi|260590815|ref|ZP_05856273.1| integrase [Prevotella veroralis F0319] gi|260537301|gb|EEX19918.1| integrase [Prevotella veroralis F0319] Length = 391 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 S + H RHSF L G + SI ++GH+ +++TQIY + ++ + D+ Sbjct: 332 SLSFHVGRHSFGALTLEAGIPIESIAKMMGHASIASTQIYAQITDNKISKDMDR 385 >gi|313159042|gb|EFR58417.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 423 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 HT RH+FAT + L NG L ++ +LGH +TTQIY V ++ + Sbjct: 352 FHTARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMI 397 >gi|293115748|ref|ZP_06604584.1| transposase [Butyrivibrio crossotus DSM 2876] gi|292808521|gb|EFF67726.1| transposase [Butyrivibrio crossotus DSM 2876] Length = 360 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 7/72 (9%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSK------RMMEIYD 54 + T H RH++ +++ +G + +++Q ++GHS +S T +YT++ + ME + Sbjct: 279 NITPHVCRHTYCSNMAKSGMNPKTLQYLMGHSDISVTMNVYTHIGFDDAEEKLKRMEEFR 338 Query: 55 QTHPSITQKDKK 66 + + QK++K Sbjct: 339 KAQAEVEQKNEK 350 >gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185] gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483] gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492] gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185] gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483] gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492] Length = 354 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 294 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 347 >gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 389 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R + AT+ + GG+ +++ +LGHS + TT IY ++ R ++ Sbjct: 332 NLTFHSSRDTMATNFIDAGGNAETLKELLGHSDIKTTMIYVKISEARKKKLIMN 385 >gi|302346774|ref|YP_003815072.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302150769|gb|ADK97030.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 406 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQ 392 >gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 308 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F L+ G + + ++GH+ ++TT+IY + E ++ Sbjct: 249 TPHVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEKQEAVEK 300 >gi|171321805|ref|ZP_02910710.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171092906|gb|EDT38154.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 578 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560 >gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193] gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193] Length = 419 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+FA+ L+S G L + +LGHS++STTQ Y + + D Sbjct: 348 HDLRHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMDSPLRAGVDA 397 >gi|116622057|ref|YP_824213.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116225219|gb|ABJ83928.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 336 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H +RHS A LL G D+ I+ LGH+ ++TT Y N + ++ + Sbjct: 256 VTPHVMRHSCAVALLQAGIDVSVIRDYLGHASVATTSRYITTNLQMKRDVLEAF 309 >gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 559 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRH+ ATH L+ G +L +++ L H+ +STT +Y + + + D Sbjct: 504 ASPHWLRHTHATHALARGAELTTVRDNLRHASVSTTSLYLHGDDVKRARQMDDA 557 >gi|315038770|ref|YP_004032338.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|312276903|gb|ADQ59543.1| phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 322 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H R S AT + G + +Q ILGHS++ TT Y VN + + + Sbjct: 267 VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320 >gi|332654353|ref|ZP_08420097.1| transposase [Ruminococcaceae bacterium D16] gi|332517439|gb|EGJ47044.1| transposase [Ruminococcaceae bacterium D16] Length = 399 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMM-EIYD 54 T H RH+F +++ +G + +++Q I+GH+ +S T YT+VN E+Y Sbjct: 341 KVTPHVCRHTFCSNMAKSGMNPKTLQYIMGHADISVTLNTYTHVNFDDAKEEVYR 395 >gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 354 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 294 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 347 >gi|139439113|ref|ZP_01772565.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] gi|133775460|gb|EBA39280.1| Hypothetical protein COLAER_01575 [Collinsella aerofaciens ATCC 25986] Length = 399 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKR 48 H+LRH+ A+ LL NG D+R+IQ LGH+ + TT IY +V R Sbjct: 334 FHSLRHTHASWLLMNGFDMRTIQERLGHASVKTTLDIYGSVMPGR 378 >gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60 H LRH+ AT LL G +++ I LGHS++S T +Y++VN E ++ + Sbjct: 314 KIRFHDLRHTHATLLLQAGVNMKVISDRLGHSQISITMDLYSHVNLDMQREAIEKLEQRL 373 Query: 61 TQK 63 + Sbjct: 374 AKD 376 >gi|126668752|ref|ZP_01739701.1| putative integrase [Marinobacter sp. ELB17] gi|126626789|gb|EAZ97437.1| putative integrase [Marinobacter sp. ELB17] Length = 332 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 25/56 (44%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS A LL G D I LGH + TTQ+Y + + + P Sbjct: 255 ITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAHMALKEAALAKIDP 310 >gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 371 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 311 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364 >gi|237725749|ref|ZP_04556230.1| transposase [Bacteroides sp. D4] gi|229435557|gb|EEO45634.1| transposase [Bacteroides dorei 5_1_36/D4] Length = 113 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH++AT + LSN + ++ +LGH + TTQIY + ++++ ++ I Sbjct: 43 PITFHMSRHTYATTVCLSNDVPIETLSKMLGHRSIRTTQIYAKITAEKVSRDMEKLAQRI 102 Query: 61 TQKD 64 Q + Sbjct: 103 EQME 106 >gi|229164860|ref|ZP_04292679.1| Integrase [Bacillus cereus R309803] gi|228618607|gb|EEK75614.1| Integrase [Bacillus cereus R309803] Length = 590 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 30/49 (61%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH+ AT ++ G D+ ++++ LGHS ++ T+ Y V +R+ + + Sbjct: 410 HQFRHTVATEMIDAGVDIYAVKNFLGHSSVNMTEKYIKVYQQRLKKEFK 458 >gi|296126706|ref|YP_003633958.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296018522|gb|ADG71759.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 374 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPS 59 + T H+LR FAT + NG D+ I +LGH ++TT Y V + + E + HP Sbjct: 267 IKVTCHSLRRGFATDMAENGTDVYVISKMLGHQNINTTVSRYIYVLAGMIKEAMEN-HPF 325 Query: 60 IT 61 Sbjct: 326 AK 327 >gi|256824531|ref|YP_003148491.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256687924|gb|ACV05726.1| site-specific recombinase XerD [Kytococcus sedentarius DSM 20547] Length = 373 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRHS+ THL+ +G D +Q +GH STT +YT V+ + Sbjct: 307 HPHCLRHSYVTHLIEDGFDPLFVQQQVGHRWGSTTALYTGVSGDYRNRTLRRA 359 >gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 283 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/38 (50%), Positives = 25/38 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 H LRH++ATH L +G L +Q LGHS L TT+ Y + Sbjct: 224 HALRHAYATHQLEHGVPLNELQKYLGHSDLRTTERYLH 261 >gi|269126617|ref|YP_003299987.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311575|gb|ACY97949.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 353 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM---MEIYDQTHP 58 + T H LRH+ ATHLL+ D+ +++ +LGH+ L+T Y + +E + HP Sbjct: 289 AVTPHGLRHTTATHLLAAATDMDAVRRVLGHADLATLSRY----RDELPGELEAAMRVHP 344 Query: 59 SIT 61 + Sbjct: 345 LLK 347 >gi|300697577|ref|YP_003748238.1| integrase/recombinase protein [Ralstonia solanacearum CFBP2957] gi|299074301|emb|CBJ53848.1| putative integrase/recombinase protein [Ralstonia solanacearum CFBP2957] Length = 568 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L +++ L H+ +STT IY + + + + Sbjct: 510 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 564 >gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933] gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502] gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410] gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408] gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933] gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502] gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410] gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408] Length = 351 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K E D Sbjct: 288 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNETVD 342 >gi|221636287|ref|YP_002524163.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159] gi|221157480|gb|ACM06598.1| tyrosine recombinase [Thermomicrobium roseum DSM 5159] Length = 334 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + T H+ RH AT L+ ++Q+ILGH+ TT+IY ++ ++ E Y Sbjct: 265 FAVTPHSFRHGLATELVRRRVRESTVQTILGHASPVTTRIYVHLTAQEAAEEYQAA 320 >gi|212709287|ref|ZP_03317415.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM 30120] gi|212688199|gb|EEB47727.1| hypothetical protein PROVALCAL_00322 [Providencia alcalifaciens DSM 30120] Length = 343 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H +RH+F TH + GG++ ++Q ILGHS++ T Y + + + + Sbjct: 285 HIMRHTFGTHFMFRGGNIVTLQKILGHSKIEQTMTYAHFAPEYLDDAIR 333 >gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] Length = 416 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSI 60 + H LRH+F T L N +L+ IQ I+GH +STT IY + + H Sbjct: 353 PFSCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYAEATKE------AKAHSFA 406 Query: 61 TQKDK 65 K Sbjct: 407 NLNGK 411 >gi|108802537|ref|YP_642733.1| phage integrase [Mycobacterium sp. MCS] gi|108772956|gb|ABG11677.1| phage integrase [Mycobacterium sp. MCS] Length = 344 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 H LRH+ AT +L +G L + +LGH+ ++TT Y ++ + ++ Q Sbjct: 281 PHWLRHTAATRMLRDGIGLEVVAKLLGHANVTTTAATYGHLTVEDARKVLQQA 333 >gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] Length = 347 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RHS+A +S G D+ ++ +L H +STTQIY ++ + + E ++ Sbjct: 290 PITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNVKKRETANK 343 >gi|228911789|ref|ZP_04075557.1| Integrase [Bacillus thuringiensis IBL 200] gi|228847849|gb|EEM92735.1| Integrase [Bacillus thuringiensis IBL 200] Length = 362 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354 >gi|225871676|ref|YP_002753034.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225785556|gb|ACO25774.1| integrase/recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 361 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354 >gi|255690723|ref|ZP_05414398.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565] gi|260623758|gb|EEX46629.1| putative Na+/H+ antiporter NhaA [Bacteroides finegoldii DSM 17565] Length = 536 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHS AT L++ G L+ + +LGH + T+IY V+ + ++ Sbjct: 480 PHCLRHSHATFLINEGQTLKDVGDLLGHKSMEATRIYAKVDLNSLRDV 527 >gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062] gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062] Length = 365 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+ ++ G L I ++LGH +TTQ Y ++++ + I DQ Sbjct: 303 HDLRHSFASLAVAGGASLPMIGALLGHKDTATTQRYAHLSADPLRSISDQ 352 >gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 353 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQT 56 H LRH+ A+ L ++G ++ +Q+ LGH+ + TT IYT+V + Sbjct: 294 HDLRHTHASLLFASGASIKYVQTRLGHADVKTTLNIYTHVTKDTKEKDLSNF 345 >gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii] gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii] Length = 356 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 25/47 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 H LRH+ AT ++ G DL +Q ILGH TQ Y + + + + Sbjct: 281 FHDLRHTSATRMVQAGVDLYKVQRILGHKSPMMTQRYAHHYPESLRD 327 >gi|299145868|ref|ZP_07038936.1| integrase [Bacteroides sp. 3_1_23] gi|298516359|gb|EFI40240.1| integrase [Bacteroides sp. 3_1_23] Length = 379 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T+H RH+FAT + L+NG + I +LGH+ + TTQ+Y ++ + + +++ Sbjct: 320 KLTSHVARHTFATTVALANGVRIEVISKMLGHTNIQTTQLYAHIYQAEVDKEFER 374 >gi|207724626|ref|YP_002255023.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206589849|emb|CAQ36810.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] Length = 553 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L +++ L H+ +STT IY + + + + Sbjct: 495 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 549 >gi|126667022|ref|ZP_01737997.1| putative integrase [Marinobacter sp. ELB17] gi|126628428|gb|EAZ99050.1| putative integrase [Marinobacter sp. ELB17] Length = 286 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 25/56 (44%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 T H LRHS A LL G D I LGH + TTQ+Y + + + P Sbjct: 209 ITPHVLRHSAAMELLQAGVDCSVIALWLGHESVETTQVYLHAHMALKEAALAKIDP 264 >gi|83749979|ref|ZP_00946929.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551] gi|83723354|gb|EAP70582.1| Hypothetical Protein RRSL_00056 [Ralstonia solanacearum UW551] Length = 566 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L +++ L H+ +STT IY + + + + Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562 >gi|291514614|emb|CBK63824.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 423 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH+FAT + L NG L ++ +LGH +TTQIY V ++ + Sbjct: 352 FHMARHTFATTVSLMNGIPLETVSKMLGHKYTTTTQIYAKVTNQMI 397 >gi|289706258|ref|ZP_06502620.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] gi|289556981|gb|EFD50310.1| site-specific recombinase, phage integrase family [Micrococcus luteus SK58] Length = 396 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H+LRH+FA+ L +G + +Q LGH L TT ++Y ++ D Sbjct: 335 TPHSLRHTFASWALMDGVPAQVVQHRLGHESLQTTSRVYAHLLLDAQRAAVDA 387 >gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] Length = 402 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+++G L +Q +LGH T+ Y ++ S R+ E+ Sbjct: 341 HDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHLASSRLREV 388 >gi|261879699|ref|ZP_06006126.1| integrase [Prevotella bergensis DSM 17361] gi|270333720|gb|EFA44506.1| integrase [Prevotella bergensis DSM 17361] Length = 406 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 393 >gi|213608065|ref|ZP_03368891.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 293 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYT 42 H LRH+FA H + +GG++ ++Q ILGH + T Y Sbjct: 257 HVLRHTFAAHFMMSGGNILALQKILGHHDIKMTMRYA 293 >gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 371 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 311 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364 >gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118] Length = 322 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H R S AT + G + +Q ILGHS++ TT Y VN + + + Sbjct: 267 VHPHKFRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYAIVNQNNVKAAHRKY 320 >gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 311 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ + Sbjct: 243 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTV 295 >gi|291515193|emb|CBK64403.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 429 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E + Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401 >gi|115360449|ref|YP_777586.1| phage integrase family protein [Burkholderia ambifaria AMMD] gi|115285777|gb|ABI91252.1| phage integrase family protein [Burkholderia ambifaria AMMD] Length = 578 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560 >gi|196044451|ref|ZP_03111686.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196047961|ref|ZP_03115139.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196021217|gb|EDX59946.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] gi|196024486|gb|EDX63158.1| transposition regulatory protein TnpB [Bacillus cereus 03BB108] Length = 700 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++ +L+ G D+ ++Q +L H+ T Y + + ++ Sbjct: 501 PHQFRHTYGVKMLNGGADILTVQELLAHASPEMTLRYAKLLDDTKRKAFE 550 >gi|332878412|ref|ZP_08446134.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683632|gb|EGJ56507.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 187 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 3 TTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 T H RH+ AT + L+NG + ++ SILGH ++TTQ+Y + +R+ D + Sbjct: 118 ITWHMSRHTMATEVCLTNGVPIETVSSILGHKNITTTQVYAKMTKERLNRDMDNLSARL 176 >gi|160890282|ref|ZP_02071285.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492] gi|317481519|ref|ZP_07940580.1| phage integrase [Bacteroides sp. 4_1_36] gi|156860014|gb|EDO53445.1| hypothetical protein BACUNI_02722 [Bacteroides uniformis ATCC 8492] gi|316902319|gb|EFV24212.1| phage integrase [Bacteroides sp. 4_1_36] Length = 388 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +A T RH+FAT L DL S+Q +LGHS + T IY +V + E Sbjct: 329 KISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKRE 378 >gi|330814764|ref|YP_004362939.1| integrase family protein [Burkholderia gladioli BSR3] gi|327374756|gb|AEA66107.1| integrase family protein [Burkholderia gladioli BSR3] Length = 390 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTH 57 +AH LRHS +H+ DLR I+ LGH+ ++TT +Y + + + +Q H Sbjct: 332 ASAHWLRHSAGSHMADGDVDLRMIRDNLGHASITTTSLYLHADDDDRHQKTEQKH 386 >gi|319902259|ref|YP_004161987.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417290|gb|ADV44401.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 388 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 +A T RH+FAT L DL S+Q +LGHS + T IY +V + E Sbjct: 329 KISAKTGRHTFATIYLRKTKDLSSLQKLLGHSNIRETMIYAHVMDESKRE 378 >gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453] gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453] Length = 268 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 1/39 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTN 43 H LRHSFA+ L + G DL++I ILGHS LSTT IYT+ Sbjct: 205 HDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYTH 243 >gi|296164168|ref|ZP_06846774.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900480|gb|EFG79880.1| tyrosine recombinase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 350 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +R + ATH G DL +IQ +LGH +++T Y + + + Y + Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQRA 338 >gi|291551262|emb|CBL27524.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 413 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + H LRH+F + L + +++ IQ I+GH + TT IYT VN + + ++ Sbjct: 353 SCHVLRHTFCSRLCESDMNVKVIQEIMGHKNVETTLDIYTEVNYNKKKDSLEE 405 >gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 371 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V E + Sbjct: 311 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKREASKK 364 >gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] Length = 370 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH++AT L+ G DL +I +L HS + TTQ+Y +V S + +Q Sbjct: 312 ITFHGFRHTYATLQLAAGTDLYTISKMLTHSNVGTTQVYVDVVSDLKRKASEQ 364 >gi|111017486|ref|YP_700458.1| tyrosine recombinase [Rhodococcus jostii RHA1] gi|110817016|gb|ABG92300.1| probable tyrosine recombinase [Rhodococcus jostii RHA1] Length = 350 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +R + ATH G DL +IQ +LGH +++T Y + + + Y + Sbjct: 286 SPHGMRRACATHNYERGVDLVAIQQLLGHWTVASTMRYVRPSETFIEDAYQRA 338 >gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] Length = 399 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMME 51 T H RH+ + L G ++ +Q +GH+ + TT IY +V +R + Sbjct: 320 KMTVHGFRHTHCSLLFEAGVSIKDVQERMGHTDIKTTMNIYAHVTEQRKEK 370 >gi|295104994|emb|CBL02538.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 385 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 + T H LRH+F T +S+G +++++Q ++GHS + T +YT++++ + + + Sbjct: 327 NLTPHVLRHTFCTRKVSSGMNIKAVQYLMGHSSVQITLDVYTSIDADMIKTEFAK 381 >gi|183981455|ref|YP_001849746.1| site-specific integrase [Mycobacterium marinum M] gi|183174781|gb|ACC39891.1| site-specific integrase [Mycobacterium marinum M] Length = 359 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H LRHSF T L G DL IQ+++GH + + Y ++ + E +D Sbjct: 299 HPHALRHSFGTALAEAGVDLSVIQALMGHDHVDSAAAYIHLAPTFLREEFD 349 >gi|38637713|ref|NP_942687.1| putative integrase/recombinase [Ralstonia eutropha H16] gi|32527051|gb|AAP85801.1| putative integrase/recombinase [Ralstonia eutropha H16] Length = 415 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH LRHS AT +L G L+ I ++L H ++TTQIY V+ + +I Sbjct: 358 AHVLRHSVATSMLGQGASLQDIAAVLRHQSVATTQIYAKVDIAALRQI 405 >gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218] Length = 395 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 6 HTLRHSFATHLLSNG-GDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+++G L +Q +LGH T+ Y ++ S R+ E+ Sbjct: 335 HDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHLASSRLREV 382 >gi|167900131|ref|ZP_02487532.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 7894] Length = 151 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 98 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 150 >gi|126729757|ref|ZP_01745570.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37] gi|126709876|gb|EBA08929.1| hypothetical protein SSE37_04765 [Sagittula stellata E-37] Length = 364 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H LRH+FAT +L +L+ + +LGHS ++TT Y +V + D Sbjct: 291 FHDLRHTFATRMLRQTQNLKLVSRLLGHSEITTTSRYAHVLDDDLASALDGF 342 >gi|113867686|ref|YP_726175.1| phage integrase family protein [Ralstonia eutropha H16] gi|113526462|emb|CAJ92807.1| phage integrase family protein [Ralstonia eutropha H16] Length = 566 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 509 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 549 >gi|228997247|ref|ZP_04156871.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17] gi|228762521|gb|EEM11444.1| Tn554-related, transposase A [Bacillus mycoides Rock3-17] Length = 372 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H LRH+ AT D++ +Q LGH+++ TT +Y + + + + + +++ Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362 >gi|325273529|ref|ZP_08139763.1| integrative genetic element Ppu40, integrase [Pseudomonas sp. TJI-51] gi|324101336|gb|EGB98948.1| integrative genetic element Ppu40, integrase [Pseudomonas sp. TJI-51] Length = 360 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRH+ A+ L+ G L S+Q +GH ++TT Y ++ + +M+ Sbjct: 283 HMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQA 329 >gi|303235718|ref|ZP_07322325.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484165|gb|EFL47153.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 406 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y VNS+R+ + + Sbjct: 339 PLTFHMARHTFASVITLSAGVPIETVSGMLGHTNLRTTQVYAAVNSERIRQDMRR 393 >gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 292 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 28/40 (70%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + ++ RH+FA H+LS+G D+ ++ ++GH L +T++Y Sbjct: 245 EISPYSFRHTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284 >gi|157149591|ref|YP_001456672.1| phage integrase family site specific recombinase [Campylobacter concisus 13826] gi|112800190|gb|EAT97534.1| site-specific recombinase, phage integrase family [Campylobacter concisus 13826] Length = 329 Score = 65.3 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA +++ +L IQ L H ++ TT IY + + + + Sbjct: 277 CHILRHSFAMNMVEKNTNLGVIQKALRHKKIQTTMIYADATGDMVKKEMKR 327 >gi|302527392|ref|ZP_07279734.1| tyrosine recombinase XerC [Streptomyces sp. AA4] gi|302436287|gb|EFL08103.1| tyrosine recombinase XerC [Streptomyces sp. AA4] Length = 387 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 26/42 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H+ RHS+ATH + G R +Q LGH+ LSTT+ Y + Sbjct: 323 TIHPHSARHSYATHAIERGVPPRQVQRDLGHAALSTTEGYLH 364 >gi|189460320|ref|ZP_03009105.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136] gi|298388052|ref|ZP_06997598.1| integrase [Bacteroides sp. 1_1_14] gi|332877186|ref|ZP_08444935.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|189433018|gb|EDV02003.1| hypothetical protein BACCOP_00957 [Bacteroides coprocola DSM 17136] gi|298259152|gb|EFI02030.1| integrase [Bacteroides sp. 1_1_14] gi|332684776|gb|EGJ57624.1| site-specific recombinase, phage integrase family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 429 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E + Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401 >gi|126441658|ref|YP_001060897.1| phage integrase family site specific recombinase [Burkholderia pseudomallei 668] gi|126221151|gb|ABN84657.1| site-specific recombinase, phage integrase family [Burkholderia pseudomallei 668] Length = 99 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHP 58 H LRH+FA+ L+ G L ++ +LGHS ++ + Y +++ E + P Sbjct: 46 HDLRHTFASWLVMEGVSLYVVKDLLGHSSITVAERYAHLSPDHGREAVQKLLP 98 >gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein [Methylophaga thiooxidans DMS010] gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein [Methylophaga thiooxydans DMS010] Length = 409 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 H LRH FA+ L+S G DL S++ +LGHS + T Y ++ + + Sbjct: 356 HDLRHHFASRLVSAGIDLNSVRELLGHSDIKMTLRYAHLAPAHLSDAV 403 >gi|239917189|ref|YP_002956747.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] gi|281414340|ref|ZP_06246082.1| site-specific recombinase, integrase family protein [Micrococcus luteus NCTC 2665] gi|239838396|gb|ACS30193.1| site-specific recombinase, integrase family [Micrococcus luteus NCTC 2665] Length = 312 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRL-STTQIYTNVNSKRMMEIYDQT 56 H RH+ AT +L +G + + +LGH+ + +TT +Y +++++ + ++ Sbjct: 250 PHWYRHTAATRMLRDGVPIEVVSKLLGHADITTTTAVYGHLSAEDARKALEEA 302 >gi|10956538|ref|NP_043131.1| integrase/recombinase [Lactobacillus delbrueckii] gi|971481|emb|CAA90742.1| integrase/recombinase [Lactobacillus delbrueckii] Length = 333 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/40 (52%), Positives = 28/40 (70%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 TAH+ RH+ AT L+NG DLR Q +L HS +TT+IY + Sbjct: 275 TAHSTRHTAATLALTNGADLRETQMLLRHSSPTTTEIYLH 314 >gi|304320725|ref|YP_003854368.1| Phage integrase [Parvularcula bermudensis HTCC2503] gi|303299627|gb|ADM09226.1| Phage integrase [Parvularcula bermudensis HTCC2503] Length = 421 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 31/47 (65%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LRHSFA+ L+NG L I ++LGHSR TTQ Y +++ + ME Sbjct: 359 HDLRHSFASFALANGLSLPVIGTLLGHSRPETTQRYAHLSDRHAMEA 405 >gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 407 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H RHSFA ++L+NG +++++ S+LGHS L T+ YT K E + Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKSEAIN 400 >gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 392 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRHSFA+ L G DL I +LGH+++ TT Y ++ + + E ++ Sbjct: 333 HDLRHSFASDALQLGADLTMIGRLLGHTQVQTTARYAHLKTDPIRETANK 382 >gi|226361765|ref|YP_002779543.1| transposase [Rhodococcus opacus B4] gi|226240250|dbj|BAH50598.1| putative transposase [Rhodococcus opacus B4] Length = 374 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ AT + G ++Q LGH+ +T+IYT V+ ++ + Y Sbjct: 317 TPHALRHTHATVMWEAGMRELALQRRLGHASPESTRIYTRVSDIQVRDEYAAA 369 >gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] Length = 382 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + HT RH+FA L+ GGD+ ++ +LGH+ +++TQ+Y + + +E + Sbjct: 322 KISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADAVMETKVEAISR 375 >gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] Length = 392 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 H LRHS+A+ L++ G L +Q LGHS T Y +++ + + + IT+ Sbjct: 328 HDLRHSYASLLVNAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITE 384 >gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002] Length = 289 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 26/53 (49%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 + + H LRHS ATH L NG DL + LGH ++ T Y + + Y Sbjct: 234 VQVSPHFLRHSHATHSLKNGCDLHLLSESLGHGNIAITSRYLHASGDDGSANY 286 >gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 372 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V + ++ Sbjct: 312 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 365 >gi|172065724|ref|YP_001816436.1| integrase family protein [Burkholderia ambifaria MC40-6] gi|171997966|gb|ACB68883.1| integrase family protein [Burkholderia ambifaria MC40-6] Length = 580 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 522 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 562 >gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 275 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H LRH+FA+HL+ G L +++ +LGH + Y++++ + Sbjct: 205 TTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPLRYSHLSPDVKRDAVK 255 >gi|289808612|ref|ZP_06539241.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 55 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSK 47 H LRH+FA+H + NGG++ ++ ILGH+ + T +Y + Sbjct: 14 HVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPD 55 >gi|288800951|ref|ZP_06406408.1| integrase [Prevotella sp. oral taxon 299 str. F0039] gi|288332412|gb|EFC70893.1| integrase [Prevotella sp. oral taxon 299 str. F0039] Length = 383 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T+HT RH+FAT + L NG + ++ +LGH +STT++Y V+ ++ Sbjct: 286 EATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAKVSKSKIAREMQ 339 >gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16] gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16] Length = 372 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + T H+ R +FAT + G D+R+IQSI+ H ++TTQ Y V + ++ Sbjct: 312 NITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASNK 365 >gi|255009702|ref|ZP_05281828.1| putative transposase [Bacteroides fragilis 3_1_12] gi|313147488|ref|ZP_07809681.1| transposase [Bacteroides fragilis 3_1_12] gi|313136255|gb|EFR53615.1| transposase [Bacteroides fragilis 3_1_12] Length = 408 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 2 STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIY 53 + T H RHS AT LLSNG + ++ ILGH+ + TTQIY + + + + Sbjct: 340 NLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKL 399 Query: 54 DQTHPSITQ 62 D TH + ++ Sbjct: 400 DATHRTASR 408 >gi|44004580|ref|NP_982007.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987] gi|42741646|gb|AAS45091.1| Tn554-related, transposase A [Bacillus cereus ATCC 10987] Length = 519 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H LRH+ AT D++ +Q LGH+++ TT +Y + + + + + +++ Sbjct: 453 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 509 >gi|329960271|ref|ZP_08298713.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532944|gb|EGF59721.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 429 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E + Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401 >gi|317477538|ref|ZP_07936762.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906292|gb|EFV28022.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 429 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E + Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401 >gi|317479189|ref|ZP_07938325.1| integrase [Bacteroides sp. 4_1_36] gi|316904633|gb|EFV26451.1| integrase [Bacteroides sp. 4_1_36] Length = 394 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + + H RH+F T ++S G + SI ++GH+ + TTQ Y V ++ E D+ Sbjct: 335 NLSYHQSRHTFGTMMVSAGVPMESISKMMGHTNIRTTQGYAKVTDDKISEDMDK 388 >gi|299069268|emb|CBJ40533.1| putative integrase/recombinase protein [Ralstonia solanacearum CMR15] Length = 566 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L +++ L H+ +STT IY + + + + Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562 >gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 28/53 (52%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H LRH+ T L G L +IQS GH + +T+IY ++ + + Y + Sbjct: 260 TCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDWLASEYRRA 312 >gi|255036128|ref|YP_003086749.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254948884|gb|ACT93584.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 415 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSI 60 + T H RH+FAT + L+NG + S+ +LGH + TTQ Y V K++ E + Sbjct: 344 NITFHLARHTFATTVTLANGVAIESVSKVLGHKNIRTTQHYAKVIDKKVGEDMKALGAVL 403 Query: 61 TQKDK 65 +K + Sbjct: 404 AKKSR 408 >gi|196043090|ref|ZP_03110329.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|196048087|ref|ZP_03115265.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|228950293|ref|ZP_04112469.1| Tn554-related, transposase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|196021343|gb|EDX60072.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|196026574|gb|EDX65242.1| transposition regulatory protein TnpA [Bacillus cereus 03BB108] gi|228809380|gb|EEM55825.1| Tn554-related, transposase A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 372 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H LRH+ AT D++ +Q LGH+++ TT +Y + + + + + +++ Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362 >gi|154505301|ref|ZP_02042039.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149] gi|153794344|gb|EDN76764.1| hypothetical protein RUMGNA_02815 [Ruminococcus gnavus ATCC 29149] Length = 405 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYD 54 H+LRH+ A+ LL+ G D++ +Q LGH + TT +Y++V + + Sbjct: 349 FHSLRHTHASILLAAGADIKYVQDRLGHKNIETTLNVYSHVMEEMRKNNVE 399 >gi|154500987|ref|ZP_02039025.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC 29799] gi|150270011|gb|EDM97530.1| hypothetical protein BACCAP_04674 [Bacteroides capillosus ATCC 29799] Length = 361 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRM 49 + H LRH+F T N DL+ IQ I+GH+ ++TT IY +R Sbjct: 301 SCHNLRHTFCTRFCENEKDLKVIQEIMGHADITTTMNIYNEATKERK 347 >gi|170737066|ref|YP_001778326.1| integrase family protein [Burkholderia cenocepacia MC0-3] gi|169819254|gb|ACA93836.1| integrase family protein [Burkholderia cenocepacia MC0-3] Length = 563 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L ++ L H+ +STT IY + + + +DQ Sbjct: 504 ASPHWMRHTHASHALARGAELIMVRDNLRHASVSTTSIYLHSDEVQRARQFDQA 557 >gi|299142947|ref|ZP_07036073.1| integrase [Prevotella oris C735] gi|298575563|gb|EFI47443.1| integrase [Prevotella oris C735] Length = 421 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 354 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQ 407 >gi|256159368|ref|ZP_05457151.1| Phage integrase [Brucella ceti M490/95/1] gi|256254665|ref|ZP_05460201.1| Phage integrase [Brucella ceti B1/94] gi|261221841|ref|ZP_05936122.1| phage integrase [Brucella ceti B1/94] gi|265997806|ref|ZP_06110363.1| phage integrase [Brucella ceti M490/95/1] gi|260920425|gb|EEX87078.1| phage integrase [Brucella ceti B1/94] gi|262552274|gb|EEZ08264.1| phage integrase [Brucella ceti M490/95/1] Length = 308 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H LRH+ A+ L+ D+R +Q LGH L T Y ++ + + Sbjct: 254 PHILRHTCASRLVRGDIDIRRVQMWLGHQTLQMTMRYAHLATHDL 298 >gi|228916332|ref|ZP_04079902.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843530|gb|EEM88608.1| hypothetical protein bthur0012_35480 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 230 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 H+LRH+ A LL +G +L+ IQ LGH + T +Y++++ K Sbjct: 170 HSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYSHISDK 212 >gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica] gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky] Length = 405 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 28/46 (60%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKR 48 T H RH+FA L+ G D+ S+ +LGHS L TT+IY ++ R Sbjct: 325 VTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRTTEIYADILESR 370 >gi|300693953|ref|YP_003749926.1| integrase/recombinase protein [Ralstonia solanacearum PSI07] gi|299075990|emb|CBJ35301.1| putative integrase/recombinase protein [Ralstonia solanacearum PSI07] Length = 566 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L +++ L H+ +STT IY + + + + Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562 >gi|284097412|ref|ZP_06385523.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3] gi|283831070|gb|EFC35069.1| tyrosine recombinase XerD [Candidatus Poribacteria sp. WGA-A3] Length = 246 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+LR SFA L GD+ ++Q +LGH ++TTQ Y VN + + +Q Sbjct: 145 HSLRKSFAQRLYEQTGDIFAVQEMLGHQSVATTQKYLGVNYANVRDALEQ 194 >gi|17549123|ref|NP_522463.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] gi|17431374|emb|CAD18053.1| putative integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 566 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ A+H L+ G +L +++ L H+ +STT IY + + + + Sbjct: 508 KASPHWMRHTHASHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQIEAA 562 >gi|329954304|ref|ZP_08295398.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328528010|gb|EGF54996.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 408 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%) Query: 2 STTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNS-------KRMMEIY 53 + T H RHS AT LLSNG + ++ ILGH+ + TTQIY + + + + Sbjct: 340 NLTYHVARHSCATSVLLSNGVPIETVSKILGHTNIRTTQIYARITDLKVSNDMEMLAQKL 399 Query: 54 DQTHPSITQ 62 D TH + ++ Sbjct: 400 DATHRTASR 408 >gi|325965385|ref|YP_004243290.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323471472|gb|ADX75156.1| site-specific recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 368 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H+LR S+ATHLL +G D R +Q +GH STT IY V+ Sbjct: 301 HSLRRSYATHLLEDGWDPRFVQHQMGHEHASTTGIYQFVSDDFRNATLRAA 351 >gi|307566140|ref|ZP_07628597.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345152|gb|EFN90532.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 419 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 352 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 406 >gi|301309519|ref|ZP_07215461.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300832608|gb|EFK63236.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 210 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 H LRHSFAT + G D +++ +LGHS +STT +Y + N ++ Sbjct: 153 HGLRHSFATRCIEAGCDYKTVSVLLGHSNISTTLNLYVHPNMEQKKR 199 >gi|253577888|ref|ZP_04855160.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850206|gb|EES78164.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 226 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQ 55 H LRH+ + + G D R++Q I+GH+ + T +Y +V +R+ + Sbjct: 166 IHPHLLRHTSCSRMAEAGVDPRTLQDIMGHASMKMTMELYNHVTDERLTNEIQK 219 >gi|145301320|ref|YP_001144160.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142856097|gb|ABO92412.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 315 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 H LR +FA+ +L NG D+ +++ +GH+ ++TTQ Y +R+ + Sbjct: 262 PHDLRRTFASAMLDNGEDIITVKDAMGHASVTTTQKYDRRGDERLKQA 309 >gi|90580686|ref|ZP_01236490.1| Tn554, transposase B [Vibrio angustum S14] gi|90438143|gb|EAS63330.1| Tn554, transposase B [Vibrio angustum S14] Length = 481 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 T H RH+ T +++NG +Q LGH + T Y +V M + + Sbjct: 306 TTHMFRHTVGTRMINNGVPQHIVQRYLGHESPNMTSTYAHVMDSTMKREFAKF 358 >gi|296164065|ref|ZP_06846688.1| integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900613|gb|EFG79996.1| integrase family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 369 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 H RH++AT LL + + ++LGHS ++TT IY +++ + + Sbjct: 307 PHWYRHTYATRLLRQNTPIEVVSTLLGHSSIATTMDIYGHLSVEDARRALEAA 359 >gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 333 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H R + AT+LL++G ++ +Q ILGH+ TQ Y ++ + + Y + Sbjct: 277 KVHCHKFRRTQATYLLNSGMTIQGVQKILGHTSPDVTQRYAQLSQENLKNEYKR 330 >gi|297618820|ref|YP_003706925.1| integrase family protein [Methanococcus voltae A3] gi|297377797|gb|ADI35952.1| integrase family protein [Methanococcus voltae A3] Length = 295 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F T + ++ + I+GH+ ++TT Y + + + + + + Sbjct: 235 VTPHVLRHTFGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFRKKEFLR 287 >gi|291276218|gb|ADD91307.1| transposase B [Bacillus sp. BS-01] Length = 639 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 H RH+ T +++NG +Q LGH T Y ++ + + + + + Sbjct: 471 HAFRHTVGTRMINNGVPQHIVQKFLGHESPEMTARYAHIFDETLKKEFTKF 521 >gi|189465783|ref|ZP_03014568.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM 17393] gi|189434047|gb|EDV03032.1| hypothetical protein BACINT_02144 [Bacteroides intestinalis DSM 17393] Length = 429 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 1 MSTTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+F TH+ LS G + ++ ++GH +STTQIY V +++ E + Sbjct: 346 FDMTFHKARHNFGTHITLSLGVPIETVSRMMGHKSISTTQIYAKVTDRKVDEDMKR 401 >gi|14020982|dbj|BAB47606.1| transposase B of Transposon Tn554 [Staphylococcus aureus] gi|169403108|emb|CAP17709.1| transposase B of Tn554 [Staphylococcus pseudintermedius] gi|302749959|gb|ADL64136.1| transposition regulatory protein TnpB_1 [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 630 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RHS T +++NG +Q LGH T Y ++ + + + + Sbjct: 463 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515 >gi|329734781|gb|EGG71087.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU045] Length = 470 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 H RH++A LL+ G D+ +IQ +L HS T Y + + ++ Sbjct: 278 HQFRHTYAVKLLNGGADILTIQELLAHSSPEMTLRYAKLLDDTKRKAFE 326 >gi|271961793|ref|YP_003335989.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM 43021] gi|270504968|gb|ACZ83246.1| hypothetical protein Sros_0196 [Streptosporangium roseum DSM 43021] Length = 108 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 29/40 (72%) Query: 13 ATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AT L+ G ++R +Q +LGH+R++TT+ YT+V++ M + Sbjct: 57 ATLLIEQGVNIRVVQEVLGHTRVTTTERYTHVSTPLMRDA 96 >gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725] gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725] Length = 294 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 + ++ RH+FA HLL+ G L +Q ++GH + +T+IY Sbjct: 240 EISPYSFRHTFAVHLLAKGMGLNFLQELMGHVTIESTKIY 279 >gi|254250671|ref|ZP_04943990.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124879805|gb|EAY67161.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 578 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 27/41 (65%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + Sbjct: 520 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLH 560 >gi|190015612|ref|YP_001967367.1| site-specific tyrosine recombinase XerS [Bacillus cereus] gi|208702064|ref|YP_002267276.1| integrase/recombinase, phage integrase family [Bacillus cereus H3081.97] gi|217956900|ref|YP_002335996.1| site-specific tyrosine recombinase XerS [Bacillus cereus AH187] gi|229142253|ref|ZP_04270775.1| Integrase [Bacillus cereus BDRD-ST26] gi|116584519|gb|ABK00636.1| phage integrase family protein [Bacillus cereus] gi|208657919|gb|ACI30289.1| integrase/recombinase, phage integrase family [Bacillus cereus H3081.97] gi|217068588|gb|ACJ82836.1| integrase/recombinase, phage integrase family [Bacillus cereus AH187] gi|228641191|gb|EEK97500.1| Integrase [Bacillus cereus BDRD-ST26] Length = 361 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+K+ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDK 354 >gi|317505556|ref|ZP_07963469.1| integrase [Prevotella salivae DSM 15606] gi|315663327|gb|EFV03081.1| integrase [Prevotella salivae DSM 15606] Length = 406 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 339 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 393 >gi|323344149|ref|ZP_08084375.1| integrase [Prevotella oralis ATCC 33269] gi|323094878|gb|EFZ37453.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSIT 61 + T H RH+ T LS G + SI ++GH+ +++TQIY V ++ E D+ + Sbjct: 339 NLTFHMARHTSGTMSLSAGIPIESIAKMIGHASIASTQIYAQVTDNKISEDMDRLIRRLQ 398 Query: 62 QKDKKN 67 +++ + Sbjct: 399 KEETRE 404 >gi|303235615|ref|ZP_07322222.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302484062|gb|EFL47050.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 451 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ + Sbjct: 384 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQE 438 >gi|282877654|ref|ZP_06286469.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300226|gb|EFA92580.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 447 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+FA+ + LS G + ++ +LGH+ L TTQ+Y V+S+R+ Sbjct: 380 PLTFHMARHTFASLITLSAGVPIETVSRMLGHTNLRTTQVYAAVSSERIHRDMQA 434 >gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002] gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 584 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 + H LRH+ A+H L+ G DL +++ L H+ +STT Y + ++ R + Sbjct: 523 ASPHWLRHTHASHALAGGVDLVAVRDNLRHASISTTSTYLHDDNARRAQ 571 >gi|224024181|ref|ZP_03642547.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM 18228] gi|224017403|gb|EEF75415.1| hypothetical protein BACCOPRO_00904 [Bacteroides coprophilus DSM 18228] Length = 319 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + T H RH+ AT LLS+G + ++ +LGH+ + TTQIY + ++++ + + Sbjct: 257 VRLTYHVARHTNATTVLLSHGVPIETVSRLLGHTDIKTTQIYAKITAQKISQDME 311 >gi|269939561|emb|CBI47922.1| transposase B 1 [Staphylococcus aureus subsp. aureus TW20] gi|269941141|emb|CBI49528.1| transposase B 2 [Staphylococcus aureus subsp. aureus TW20] Length = 630 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RHS T +++NG +Q LGH T Y ++ + + + + Sbjct: 463 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 515 >gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 291 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 26/41 (63%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN 43 +AH LRH+ A+H L G + +Q+ LGH+ ++TT Y + Sbjct: 238 VSAHWLRHAHASHALDRGAPIHLVQATLGHASVATTGRYLH 278 >gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv] gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11] gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra] gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987] gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A] gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85] gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85] gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210] gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207] gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506] gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003] gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475] gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv] gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11] gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85] gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148] gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 332 Score = 64.9 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRH +AT +LR++Q +LGH+ + TT+ YT + + Sbjct: 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325 >gi|298388014|ref|ZP_06997561.1| integrase [Bacteroides sp. 1_1_14] gi|298259194|gb|EFI02071.1| integrase [Bacteroides sp. 1_1_14] Length = 342 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+F T L +S G + ++ ++GH+ + TTQIY + +++ + + Sbjct: 274 TYHVARHTFGTLLTISQGVPIETVSRMMGHTNIKTTQIYAKITKEKISQDME 325 >gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15] gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15] Length = 378 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYD 54 +S H+LRH+ AT LL NG ++ I LGHSR+S T Y++V K + D Sbjct: 315 LSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTDKMRNQTVD 369 >gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC BAA-613] gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC BAA-613] Length = 392 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMME 51 T H+LRH++A+ LL G D+ + +LGHS ++TT Y +V ++M+ Sbjct: 336 TIHSLRHTYASRLLKRGVDVSVVSKLLGHSDINTTYGKYIHVLHTQLMQ 384 >gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] Length = 311 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 S +AH LRH+ A+H L+NG ++ ++ LGH+ +STT Y N +Y Sbjct: 257 SVSAHFLRHACASHSLANGASIQLVKETLGHANISTTNWYLEANPDDCASLY 308 >gi|208743365|ref|YP_002267816.1| site-specific tyrosine recombinase XerS [Bacillus cereus] Length = 361 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+++ E D Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNEKKREAVD 353 >gi|297618854|ref|YP_003706959.1| integrase family protein [Methanococcus voltae A3] gi|297377831|gb|ADI35986.1| integrase family protein [Methanococcus voltae A3] Length = 295 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H LRH+F T + ++ + I+GH+ ++TT Y + + + + + + Sbjct: 235 VTPHVLRHTFGTLACESNMNIEILSKIMGHANVNTTMTYIHSSKEFRKKEFLR 287 >gi|256840829|ref|ZP_05546337.1| integrase [Parabacteroides sp. D13] gi|256738101|gb|EEU51427.1| integrase [Parabacteroides sp. D13] Length = 184 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTN-VNSKRMMEI 52 + T++T+RHSFA+ L + I +LGH + TTQIY + +R+ ++ Sbjct: 116 LPVTSYTIRHSFASFLKEQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKV 168 >gi|227519604|ref|ZP_03949653.1| integrase family protein [Enterococcus faecalis TX0104] gi|227072954|gb|EEI10917.1| integrase family protein [Enterococcus faecalis TX0104] gi|315168777|gb|EFU12794.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1341] Length = 376 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSK 47 + H LRHS A HLL +G +++ + LGH ++ T +Y +V+ K Sbjct: 317 KLSPHALRHSHAVHLLESGSNIKFVSERLGHHTINMTANVYLHVSKK 363 >gi|150006208|ref|YP_001300952.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|149934632|gb|ABR41330.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] Length = 483 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+ AT LSNG + ++ S+LGH + TTQIY + +++ + + Sbjct: 414 ITWHQSRHTAATTVFLSNGVPIETVSSMLGHKSIKTTQIYAKITKEKLNQDME 466 >gi|330752707|emb|CBL88171.1| putative transposase [uncultured Leeuwenhoekiella sp.] Length = 417 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 2 STTAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FAT + LSNG + ++ +LGH++LSTTQIY V +++ Sbjct: 345 KLTFHAARHTFATTVTLSNGVPIETVSKLLGHTKLSTTQIYARVIEQKVSSDMR 398 >gi|322383160|ref|ZP_08056982.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152703|gb|EFX45334.1| integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 360 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 4 TAHTLRHSFAT-HLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRHSFAT + L N DL Q LGH+ TTQIY ++ K M E D+ Sbjct: 306 SVHKLRHSFATDYYLQN--DLYKTQEQLGHASSDTTQIYAHLTDKTMEEAIDR 356 >gi|317475379|ref|ZP_07934643.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316908407|gb|EFV30097.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 411 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 3 TTAHTLRHSFATH-LLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 T H RH+ AT LSNG + ++ S+LGH + TTQIY + ++ + + Sbjct: 342 ITWHQSRHTAATTIFLSNGVPIETVSSMLGHKSIKTTQIYAKITKVKLNQDMEN 395 >gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005] Length = 332 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRH +AT +LR++Q +LGH+ + TT+ YT + + Sbjct: 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325 >gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] Length = 380 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVN---SKRMMEIYDQT 56 T H RH+ A+ L+ G L+ +Q LGH + TT Y +V+ +++ + +++ Sbjct: 320 ITVHGFRHTQASLLIEMGASLKEVQFRLGHEDIQTTMNTYAHVSKLAKEQLADKFNKF 377 >gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030] gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030] Length = 394 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQTHPSITQ 62 T H RH+FA LS G D+ ++ +LGHS L TT+IY ++ +R ME P I Sbjct: 328 VTFHAGRHTFAVIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAMLTF-PDIFA 386 Query: 63 KDKKN 67 K+ Sbjct: 387 SSGKD 391 >gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591] gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591] Length = 379 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIY 53 T H+ RH+FA L+ G D+ ++ +LGHS L TT+IY ++ R + Sbjct: 320 KVTFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESRRRDAM 371 >gi|217968814|ref|YP_002354048.1| integrase [Thauera sp. MZ1T] gi|217506141|gb|ACK53152.1| integrase family protein [Thauera sp. MZ1T] Length = 332 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 21/39 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIY 41 T H LRH+ A LL G D I LGH + TTQIY Sbjct: 256 VTPHVLRHTTAMELLQAGVDRAVIALWLGHESVETTQIY 294 >gi|210612360|ref|ZP_03289285.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787] gi|210151620|gb|EEA82627.1| hypothetical protein CLONEX_01486 [Clostridium nexile DSM 1787] Length = 420 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH++ T++ ++G +L+++Q ++GHS +S T IYT+ + + Sbjct: 338 PVTPHICRHTYCTNMANSGMNLKTLQYLMGHSDVSVTLNIYTHTGYDDAKKELAR 392 >gi|94264575|ref|ZP_01288360.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta proteobacterium MLMS-1] gi|93454993|gb|EAT05227.1| Phage integrase:Phage integrase, N-terminal SAM-like [delta proteobacterium MLMS-1] Length = 420 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEI 52 AH RH FAT +L G L+ + +LGH L+TT IY V+ + ++ Sbjct: 364 AHVFRHGFATRMLQEGHSLKKVADVLGHRHLATTFIYAKVDFNALNQV 411 >gi|41408850|ref|NP_961686.1| hypothetical protein MAP2752 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397209|gb|AAS05069.1| hypothetical protein MAP_2752 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 381 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 36/52 (69%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 TAH LRH + T L+++G DLR+ Q++L HS L++T IYT V R +E D+ Sbjct: 234 TAHRLRHWYGTTLVASGTDLRTAQTLLRHSNLASTAIYTEVYDDRRIEAIDR 285 >gi|325523725|gb|EGD01985.1| integrase family protein [Burkholderia sp. TJI49] Length = 318 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H +RH+ ATH L+ G +L +++ L H+ +STT IY + + + Sbjct: 260 ASPHWMRHTHATHALARGAELTTVRDNLRHASISTTSIYLHGDDVKRARQLSNA 313 >gi|167621565|ref|YP_001672073.1| integrase family protein [Caulobacter sp. K31] gi|167351688|gb|ABZ74414.1| integrase family protein [Caulobacter sp. K31] Length = 268 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H LRH+ AT LL+ G D+ +Q LGH ++TT++Y + + +D Sbjct: 174 VYPHLLRHTVATRLLALGMDITDLQRFLGHESITTTRLYAETTAATLQRKFDA 226 >gi|269939603|emb|CBI47969.1| transposase B from transposon Tn554 [Staphylococcus aureus subsp. aureus TW20] Length = 609 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 AH RHS T +++NG +Q LGH T Y ++ + + + + Sbjct: 442 HAHAFRHSVGTRMINNGVPQHIVQKFLGHESPEMTSRYAHIFDETLKNEFTKF 494 >gi|255014968|ref|ZP_05287094.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 407 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 5 AHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRM 49 H RH++AT + LS+G L ++ +LGHS++ TTQIY V +++ Sbjct: 343 FHAGRHTYATEITLSHGVPLETVSRMLGHSQIETTQIYAKVTDEKI 388 >gi|254437074|ref|ZP_05050568.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307] gi|198252520|gb|EDY76834.1| hypothetical protein OA307_1944 [Octadecabacter antarcticus 307] Length = 80 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMME 51 T H LRH+ A LL +G D I LGH + TTQ+Y + + + + E Sbjct: 4 VTPHVLRHTAAMQLLQSGVDRTIIALWLGHESIETTQVYIHADIE-LKE 51 >gi|153930721|ref|YP_001393390.1| putative integrase family protein [Yersinia pseudotuberculosis IP 31758] gi|152958262|gb|ABS45724.1| putative integrase family protein [Yersinia pseudotuberculosis IP 31758] Length = 376 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 + T H LRH+ ATH G L + Q LGH+ TT+IY ++++ Sbjct: 314 TMTTHWLRHTNATHRFMAGASLETTQDELGHADPRTTRIYAKTSNEKRK 362 >gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965] gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965] gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] Length = 391 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Query: 3 TTAHTLRHSFATHLL-SNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQ 55 T H RH+FAT L+ +++Q +LGH + T IYT+VN+K + + Sbjct: 331 ITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTLDIYTHVNNKNKEDAVNA 385 >gi|327404978|ref|YP_004345816.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327320486|gb|AEA44978.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 419 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 4 TAHTLRHSFATHL-LSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYD 54 T H RH+FAT + L+NG + ++ S+LGH + TTQ+Y V K++ + Sbjct: 350 TTHIARHTFATTVTLANGVPIETVSSMLGHKSIRTTQVYAKVVEKKVSDDMK 401 >gi|300117727|ref|ZP_07055505.1| Tn554-related, transposase A [Bacillus cereus SJ1] gi|298724894|gb|EFI65558.1| Tn554-related, transposase A [Bacillus cereus SJ1] Length = 372 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQT 56 + H LRH+ AT D++ +Q LGH+++ TT +Y + + + + + +++ Sbjct: 306 IDIHPHLLRHTHATIYYQETKDIKQVQERLGHAQIQTTMNLYLHPSDEDIRKDWEKA 362 >gi|319762191|ref|YP_004126128.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317116752|gb|ADU99240.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 414 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 27/50 (54%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H +RH FA+ L+ G DL +++ +LGH+ L T Y ++ + + Sbjct: 360 HDMRHHFASRLVMAGVDLNTVRELLGHADLKMTLRYAHLAPEHKAMAVAK 409 >gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 384 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 2 STTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNVNSKRMMEIYDQTHPSI 60 H LRHS A+ LL G +++ IQ +LGHS +S T + Y+++ E+ + + Sbjct: 314 PIHFHDLRHSAASILLCMGVNIKVIQELLGHSDISITLRTYSHLLPSMQQEVIETWNEVF 373 Query: 61 TQKDKKN 67 + D+++ Sbjct: 374 REDDQED 380 >gi|172039474|ref|YP_001805975.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171700928|gb|ACB53909.1| putative integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 360 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 1 MSTTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTT-QIYTNV-NSKRMMEIYDQ 55 + H RH++AT LL G ++ +LGH+ + TT IY++V + +M + ++ Sbjct: 299 IKVYPHLFRHTYATRLLKAGYSPERVKYLLGHTSIQTTLDIYSHVISEADLMTVIEE 355 >gi|134278599|ref|ZP_01765313.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 305] gi|134250383|gb|EBA50463.1| site-specific recombinase, phage integrase family protein [Burkholderia pseudomallei 305] Length = 561 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQT 56 + H LRHS A+H L+ G +L +++ L H+ +STT Y + + + Q Sbjct: 504 ASPHWLRHSHASHALARGAELITVRDNLRHASISTTSTYLHGDEAKRARQLSQA 557 >gi|229070581|ref|ZP_04203819.1| Integrase [Bacillus cereus F65185] gi|228712486|gb|EEL64423.1| Integrase [Bacillus cereus F65185] Length = 361 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 4 TAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 + H LRH++AT+ DL ++ LGH+ + T IYTN+N+K+ E D+ Sbjct: 303 SPHKLRHTYATNHYKENKDLVLLRDQLGHTSVEVTSIYTNINNKKKREAIDR 354 >gi|217968816|ref|YP_002354050.1| integrase [Thauera sp. MZ1T] gi|217506143|gb|ACK53154.1| integrase family protein [Thauera sp. MZ1T] Length = 411 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 23/46 (50%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 AH LRH+ AT +L G L I +L H TT IY V+ + Sbjct: 355 AHLLRHTVATQMLRQGASLAEIGELLRHRSPQTTMIYAKVDLDLLR 400 >gi|225387163|ref|ZP_03756927.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme DSM 15981] gi|225046736|gb|EEG56982.1| hypothetical protein CLOSTASPAR_00915 [Clostridium asparagiforme DSM 15981] Length = 284 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMMEIYDQ 55 H+ RH FA + + N GD+ + +LGH + TT+IY +S I ++ Sbjct: 228 VYPHSFRHRFAKNFIENSGDIALLSDLLGHESIETTRIYLRRSSSEQYRIVNK 280 >gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17] gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46] gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46] gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17] gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46] gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17] Length = 332 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 3 TTAHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNSKRMM 50 T HTLRH +AT +LR++Q +LGH+ + TT+ YT + + Sbjct: 278 ATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVR 325 >gi|298244075|ref|ZP_06967881.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297551556|gb|EFH85421.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 379 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 5 AHTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQ-IYTNVNSKRMMEIYDQTHPSITQK 63 H LRH AT LLS + +Q ILGHS +STT IY++V + Q H + Q Sbjct: 314 FHDLRHGAATLLLSLQVHPKVVQEILGHSDISTTMNIYSHVLPSMQADAMKQLHSAFKQD 373 Query: 64 D 64 D Sbjct: 374 D 374 >gi|294676507|ref|YP_003577122.1| phage integrase [Rhodobacter capsulatus SB 1003] gi|294475327|gb|ADE84715.1| phage integrase [Rhodobacter capsulatus SB 1003] Length = 409 Score = 64.9 bits (158), Expect = 4e-09, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 28/45 (62%) Query: 6 HTLRHSFATHLLSNGGDLRSIQSILGHSRLSTTQIYTNVNS