Query gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 101 No_of_seqs 106 out of 1506 Neff 7.9 Searched_HMMs 33803 Date Wed Jun 1 13:20:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780491.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cq1_A Putative uncharacteriz 99.8 7.6E-20 2.3E-24 132.3 7.2 95 1-95 3-97 (103) 2 >1uwd_A Hypothetical protein T 99.8 3.9E-18 1.1E-22 122.7 8.6 83 3-85 5-88 (88) 3 >3lno_A Putative uncharacteriz 99.7 2.4E-18 7.2E-23 123.8 5.8 85 2-86 6-92 (92) 4 >1th5_A NIFU1; iron-sulfur clu 83.2 0.72 2.1E-05 25.5 2.2 69 1-75 1-70 (74) 5 >2z51_A NIFU-like protein 2, c 81.6 1.2 3.6E-05 24.2 2.9 71 3-77 3-75 (81) 6 >1veh_A NIFU-like protein hiri 77.6 0.84 2.5E-05 25.1 1.0 70 5-77 14-85 (92) 7 >1xhj_A Nitrogen fixation prot 76.6 4.5 0.00013 21.0 4.5 73 5-81 8-82 (88) 8 >2z51_A NIFU-like protein 2, c 67.6 9.9 0.00029 19.1 6.4 66 4-76 4-71 (73) 9 >3io1_A Aminobenzoyl-glutamate 64.4 9.5 0.00028 19.2 3.9 74 7-80 34-110 (120) 10 >1mwy_A ZNTA; open-faced beta- 62.1 6.3 0.00019 20.2 2.7 39 38-82 2-41 (73) 11 >2g9o_A Copper-transporting AT 60.2 7.7 0.00023 19.7 2.9 37 42-81 4-40 (90) 12 >3dxs_X Copper-transporting AT 59.8 8.8 0.00026 19.4 3.1 37 43-82 4-40 (74) 13 >1yj7_A ESCJ; mixed alpha/beta 59.1 13 0.00038 18.4 3.9 33 52-84 17-49 (103) 14 >1p6t_A Potential copper-trans 58.7 8.6 0.00026 19.4 2.9 41 39-82 4-44 (72) 15 >3cjk_B Copper-transporting AT 58.5 9.8 0.00029 19.1 3.2 38 42-82 3-40 (75) 16 >1aw0_A Menkes copper-transpor 57.5 9.3 0.00028 19.2 2.9 24 59-82 18-41 (72) 17 >2aj0_A Probable cadmium-trans 57.4 7.7 0.00023 19.7 2.5 24 59-82 18-41 (71) 18 >1opz_A Potential copper-trans 56.9 8.6 0.00025 19.4 2.6 39 41-82 6-44 (76) 19 >1qup_A Superoxide dismutase 1 56.5 4.6 0.00014 20.9 1.2 37 40-82 7-43 (73) 20 >2ew9_A Copper-transporting AT 55.3 11 0.00032 18.9 2.9 38 42-82 5-42 (73) 21 >1kvi_A Copper-transporting AT 54.2 14 0.00042 18.2 3.4 42 37-81 4-45 (79) 22 >1yg0_A COP associated protein 54.1 6.5 0.00019 20.1 1.7 37 43-82 3-39 (66) 23 >2rop_A Copper-transporting AT 51.9 12 0.00037 18.5 2.8 43 37-82 14-56 (98) 24 >1osd_A MERP, hypothetical pro 49.8 7.1 0.00021 19.9 1.3 39 42-83 4-42 (72) 25 >2kkh_A Putative heavy metal t 48.6 18 0.00052 17.7 3.1 46 35-83 10-55 (95) 26 >2roe_A Heavy metal binding pr 47.8 9.4 0.00028 19.2 1.7 25 58-82 14-38 (66) 27 >2crl_A Copper chaperone for s 47.6 8.6 0.00025 19.4 1.4 37 39-81 19-55 (98) 28 >2qif_A Copper chaperone COPZ; 44.8 25 0.00073 16.8 3.5 35 43-80 4-38 (69) 29 >2ew9_A Copper-transporting AT 44.0 11 0.00033 18.7 1.6 36 40-81 5-41 (76) 30 >1a6d_A Thermosome (alpha subu 43.4 21 0.00063 17.2 2.9 65 5-69 25-96 (102) 31 >1a6d_B Thermosome (beta subun 43.0 16 0.00047 17.9 2.2 65 5-69 26-98 (104) 32 >1q8l_A Copper-transporting AT 42.4 13 0.00038 18.4 1.7 40 38-80 6-45 (84) 33 >1sb6_A Copper chaperone scatx 42.3 7.4 0.00022 19.8 0.4 24 59-82 16-39 (64) 34 >1cpz_A Protein (COPZ); copper 41.1 12 0.00034 18.7 1.3 35 44-81 3-37 (68) 35 >1cc8_A Protein (metallochaper 40.7 12 0.00036 18.6 1.3 37 40-82 6-43 (73) 36 >2k2p_A Uncharacterized protei 39.5 16 0.00047 17.9 1.8 43 37-82 18-60 (85) 37 >1jk9_B CCS, copper chaperone 39.4 13 0.00037 18.5 1.2 36 40-81 8-43 (76) 38 >1p6t_A Potential copper-trans 39.2 16 0.00047 17.9 1.7 36 42-80 3-38 (79) 39 >2rop_A Copper-transporting AT 38.6 22 0.00064 17.2 2.3 40 40-82 19-58 (104) 40 >1jww_A Potential copper-trans 37.2 15 0.00044 18.1 1.3 36 43-81 5-40 (80) 41 >1fvq_A Copper-transporting AT 36.2 24 0.00071 16.9 2.3 35 43-80 4-38 (72) 42 >2gcf_A Cation-transporting AT 36.1 11 0.00031 18.9 0.4 35 41-81 5-40 (73) 43 >1yjr_A Copper-transporting AT 34.6 16 0.00048 17.9 1.2 23 59-81 19-41 (75) 44 >1y3j_A Copper-transporting AT 34.3 18 0.00053 17.6 1.4 37 42-81 4-40 (77) 45 >1q3q_A Thermosome alpha subun 29.5 36 0.0011 15.9 2.3 65 5-69 26-99 (105) 46 >1ysj_A Protein YXEP; M20 fami 24.7 54 0.0016 14.9 4.2 73 8-80 37-115 (128) 47 >1pjq_A CYSG, siroheme synthas 24.2 49 0.0015 15.1 2.2 32 35-66 8-39 (41) 48 >2j8s_A ACRB, acriflavine resi 23.0 59 0.0017 14.7 6.2 45 37-81 103-148 (208) 49 >2d5w_A Peptide ABC transporte 22.6 60 0.0018 14.7 2.6 50 3-52 36-86 (90) 50 >2f7v_A Aectylcitrulline deace 21.3 64 0.0019 14.5 4.5 56 26-81 62-120 (122) 51 >2ofg_X Zinc-transporting ATPa 20.4 13 0.00039 18.4 -1.4 31 47-83 12-42 (111) No 1 >>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:) Probab=99.80 E-value=7.6e-20 Score=132.27 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=90.1 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 96035899999984141879997623238701013369879999996722220689999999999853985340699997 Q gi|254780491|r 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 1 Ms~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) |+..++++|+++|++|.||++++||+++|+|+++.+++++|.|.|.+++++|+.++.++++++++|+.++|+++|+|.++ T Consensus 3 ~~~~~~~~i~~aL~~V~DP~~~~~Iv~lg~V~~i~i~~~~V~v~l~l~~~~~~~~~~i~~~i~~~l~~l~gv~~V~V~~~ 82 (103) T 3cq1_A 3 ARNPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRXTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103) T ss_dssp CCSHHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 88378999999981688989998844457721578865835728807999986789999999999981899750899999 Q ss_pred ECCCCCCCCCCCCCC Q ss_conf 078987321569985 Q gi|254780491|r 81 ENKNPPQQRNNLNVK 95 (101) Q Consensus 81 ~~~~~~~~~~~~gvK 95 (101) ++.+|...+..+..| T Consensus 83 ~~~~~~~~~~~~~~r 97 (103) T 3cq1_A 83 FEPPWTLARLSEKAR 97 (103) T ss_dssp CSSCCCGGGCCSGGG T ss_pred ECCCCCHHHCCHHHH T ss_conf 669999577759999 No 2 >>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} (A:1-88) Probab=99.75 E-value=3.9e-18 Score=122.68 Aligned_cols=83 Identities=22% Similarity=0.223 Sum_probs=80.2 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCC-CEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 035899999984141879997623238701013369-8799999967222206899999999998539853406999970 Q gi|254780491|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVH-NTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 3 ~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~-~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) ..++++|+++|++|.||++++||+++|+|+++.+++ |+|.|.|++++++|+.++.++.+++++|++++|+++|+|.+++ T Consensus 5 ~~t~~~V~~aL~~v~DP~~~~div~lg~V~~i~v~~dg~V~v~i~l~~~~~~~~~~l~~~i~~~l~~l~gv~~v~V~~~~ 84 (88) T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTF 84 (88) T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECC T ss_pred CCCHHHHHHHHHCCCCCCCCCCEEECCEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEE T ss_conf 27899999998568899999371443604456651456536888637899962899999999999738997508999996 Q ss_pred CCCC Q ss_conf 7898 Q gi|254780491|r 82 NKNP 85 (101) Q Consensus 82 ~~~~ 85 (101) |.+| T Consensus 85 ~~pw 88 (88) T 1uwd_A 85 DPPW 88 (88) T ss_dssp SSCC T ss_pred CCCC T ss_conf 3999 No 3 >>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} (A:1-92) Probab=99.74 E-value=2.4e-18 Score=123.82 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=80.2 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCC-CCEEEEEEEECHHHCHHHHHHHHHHHHHHH-CCCCCCCEEEEE Q ss_conf 603589999998414187999762323870101336-987999999672222068999999999985-398534069999 Q gi|254780491|r 2 NQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-HNTVYLSITVPHTIAHQLQSLRSNAQQIIQ-NIPTVKNAVVTL 79 (101) Q Consensus 2 s~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~-~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~-~i~gv~~v~V~l 79 (101) ...++++|+++|++|+||++|+||+++|+|+++.++ +|+|+|.|++++++|+....++++++++|+ .++|+.+|+|.+ T Consensus 6 ~~~~~~~V~~aL~~V~DP~~g~div~lglV~~i~v~~~~~V~v~l~lt~p~~~~~~~i~~~i~~al~~~l~gv~~v~V~~ 85 (92) T 3lno_A 6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITXTXTSIGCPXAGQIVSDVKKVLSTNVPEVNEIEVNV 85 (92) T ss_dssp HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEE T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 78899999999808889999989445587577897449979999995899977699999999999997389974399999 Q ss_pred EECCCCC Q ss_conf 7078987 Q gi|254780491|r 80 TENKNPP 86 (101) Q Consensus 80 t~~~~~~ 86 (101) ++|++|. T Consensus 86 ~~~ppwt 92 (92) T 3lno_A 86 VWNPPWS 92 (92) T ss_dssp CCSSCCC T ss_pred EECCCCC T ss_conf 9679999 No 4 >>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} (A:) Probab=83.20 E-value=0.72 Score=25.46 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=49.9 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHH-HHHHHHHHHHHCCCCCCCE Q ss_conf 96035899999984141879997623238701013369879999996722220689-9999999998539853406 Q gi|254780491|r 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQ-SLRSNAQQIIQNIPTVKNA 75 (101) Q Consensus 1 Ms~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~-~l~~~i~~~l~~i~gv~~v 75 (101) |-+.+.+.|.++|..+.-|-...| -|-++=+.+++|.|.+.|.=....|+... .+.+.+++. +|++..| T Consensus 1 ml~~~~~~I~~~L~~irp~l~~~d---GGdielv~v~~~~V~V~l~GaC~gCpTl~~~Ie~~L~~~---ipei~~V 70 (74) T 1th5_A 1 MLELNEENVEKVLNEIRPYLAGTG---GGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREK---IPSIQIV 70 (74) T ss_dssp CCCCSHHHHHHHHTTTHHHHTTTT---CCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHH---CTTCSEE T ss_pred CCCCCHHHHHHHHHHHCHHHHHCC---CCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCEE T ss_conf 976689999999998563040268---971999995299999995588765405999999999987---9984089 No 5 >>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:1-81) Probab=81.65 E-value=1.2 Score=24.20 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=56.5 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHH-HHHHHHHHHHHC-CCCCCCEEE Q ss_conf 035899999984141879997623238701013369879999996722220689-999999999853-985340699 Q gi|254780491|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQ-SLRSNAQQIIQN-IPTVKNAVV 77 (101) Q Consensus 3 ~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~-~l~~~i~~~l~~-i~gv~~v~V 77 (101) +.+.+.|..+|..|+ |.+..| -|-++=+.+++|.|.+.|.=....|+... .++..++..|.. +|++..|.. T Consensus 3 ~~~~~~i~~~le~IR-P~L~~d---GGdi~lv~v~~g~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~p~~~~V~~ 75 (81) T 2z51_A 3 PLTEENVESVLDEIR-PYLMSD---GGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEA 75 (81) T ss_dssp CSCHHHHHHHHHHHH-HHHHHT---TEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEE T ss_pred CCCHHHHHHHHHHHC-HHHHHC---CCEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 878999999999856-798855---9847999801998999982687899437999999999999999875311100 No 6 >>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:) Probab=77.57 E-value=0.84 Score=25.10 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=56.2 Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHH-HHHHHHHHHHHC-CCCCCCEEE Q ss_conf 5899999984141879997623238701013369879999996722220689-999999999853-985340699 Q gi|254780491|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQ-SLRSNAQQIIQN-IPTVKNAVV 77 (101) Q Consensus 5 ~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~-~l~~~i~~~l~~-i~gv~~v~V 77 (101) +.+.|.++|..-.-|.+..| -|-++=+.+++|.|.+.|.=....|+... .++..+++.|.. +|++..|.- T Consensus 14 ~~~~i~~~l~~~IrP~l~~d---GGdi~lv~v~~g~v~v~l~GaC~gCp~s~~Tl~~~Ie~~L~~~~p~v~~V~~ 85 (92) T 1veh_A 14 VVAMIKELLDTRIRPTVQED---GGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ 85 (92) T ss_dssp HHHHHHHHHHHTTHHHHHHH---SCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE T ss_pred HHHHHHHHHHHHCCHHHHHC---CCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 99999999998417678966---9976999960887899827878998408999999999999997898665987 No 7 >>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structure initiative, NESG, PSI; NMR {Staphylococcus epidermidis atcc 12228} (A:) Probab=76.64 E-value=4.5 Score=21.00 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=56.3 Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEECHHHCHHHH-HHHHHHHHHHHC-CCCCCCEEEEEEE Q ss_conf 5899999984141879997623238701013369879999996722220689-999999999853-9853406999970 Q gi|254780491|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQ-SLRSNAQQIIQN-IPTVKNAVVTLTE 81 (101) Q Consensus 5 ~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~v~i~l~l~~~~~~~~~-~l~~~i~~~l~~-i~gv~~v~V~lt~ 81 (101) +.+.|.++|..|+ |.+..| -|-++=+.+++|.|.+.|.=....|+... .++..+++.|.. +|++..|.-.... T Consensus 8 ~~~~I~~~Le~IR-P~L~~d---GGdv~lv~v~~g~v~Vrl~GaC~gC~~s~~Tl~~~Ie~~L~~~ip~~~~V~~v~~~ 82 (88) T 1xhj_A 8 MFDQVAEVIERLR-PFLLRD---GGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFLE 82 (88) T ss_dssp HHHHHHHHHHHHH-HHHHHH---SCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEECC T ss_pred HHHHHHHHHHHHH-HHHHHC---CCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 9999999999866-899967---99679986679999999647888980189999999999999878997779997531 No 8 >>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A (A:82-154) Probab=67.58 E-value=9.9 Score=19.08 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=47.9 Q ss_pred CCHHHHHHHHHHCCCCCCCCCHHHC-CCCCCCCCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHH-CCCCCCCEE Q ss_conf 3589999998414187999762323-870101336987999999672222068999999999985-398534069 Q gi|254780491|r 4 ILKNQIVDSLKVLSIPGEKNNIVEM-QRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQ-NIPTVKNAV 76 (101) Q Consensus 4 ~~~~~I~~~L~~v~dP~~~~~iv~~-g~V~~i~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~-~i~gv~~v~ 76 (101) ...+.|.++|..|+ |.+..| - |-++=+.++++.|.+.|.=....|+.. +..+++.|. .+|++..|. T Consensus 4 ~~~~~I~~~L~~iR-P~L~~D---ggGdielv~v~~~~V~v~l~GaC~gCpTl---~~~Ie~~l~~~ip~i~~V~ 71 (73) T 2z51_A 4 LNEENIEKVLEEIR-PYLIGT---ADGSLDLVEIEDPIVKIRITGPAAGVMTV---RVAVTQKLREKIPSIAAVQ 71 (73) T ss_dssp SSHHHHHHHHHHHG-GGCCGG---GCCEEEEEEEETTEEEEEEESGGGGCHHH---HHHHHHHHHHHCTTCCEEE T ss_pred CHHHHHHHHHHCCC-CCCCCC---CCCEEEEEEEECCEEEEEECCCCCCCCCH---HHHHHHHHHHHCCCCCEEE T ss_conf 00245566543035-887778---88539999996998999965886677539---9999999998699961899 No 9 >>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} (A:225-344) Probab=64.38 E-value=9.5 Score=19.17 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=55.2 Q ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCC---CCCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 999999841418799976232387010---13369879999996722220689999999999853985340699997 Q gi|254780491|r 7 NQIVDSLKVLSIPGEKNNIVEMQRLSE---IFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 7 ~~I~~~L~~v~dP~~~~~iv~~g~V~~---i~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) -.++..|+.+.++......+..+++.. ..+-.+++.+.+.+-+......+.+.+.+++.++.+..-..+++.++ T Consensus 34 ~~~i~~l~~~~~~~~~~~~~~~~~~~~g~~~NvIp~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~ei~ 110 (120) T 3io1_A 34 AQAALGLHAIPPHSAGASRVNVGVXQAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVAGAAAXYEARYELR 110 (120) T ss_dssp HHHHHHHHTCCCBTTBCEEEEEEEEEECSCTTSCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 88765430012345532278999852543103067504899985477778887899987666554300123431689 No 10 >>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} (A:) Probab=62.05 E-value=6.3 Score=20.16 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=26.6 Q ss_pred CCEEEEEEE-ECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 987999999-672222068999999999985398534069999707 Q gi|254780491|r 38 HNTVYLSIT-VPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 38 ~~~v~i~l~-l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) |.++.|.+. +....| ...++++|++++||.+++|.+..+ T Consensus 2 G~~~~l~V~gm~C~~C------~~~Ie~~l~~~~GV~~v~v~~~~~ 41 (73) T 1mwy_A 2 GTRYSWKVSGMDCAAC------ARKVENAVRQLAGVNQVQVLFATE 41 (73) T ss_dssp CEEEEEEEESCCSTTH------HHHHHHHHHTSSSEEEEEEETTTT T ss_pred CCEEEEEECCCCHHHH------HHHHHHHHHCCCCCEEEEEECCCC T ss_conf 9889999899883889------999999986599947999989899 No 11 >>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A (A:) Probab=60.17 E-value=7.7 Score=19.67 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=25.0 Q ss_pred EEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 9999967222206899999999998539853406999970 Q gi|254780491|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 42 ~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) .+.|.++.-.|.. =...++++|..+|||.++.|.+.. T Consensus 4 ~~~l~V~Gm~C~~---C~~~Ie~~l~~~~gV~~v~vn~~~ 40 (90) T 2g9o_A 4 TATFIIDGMHCKS---CVSNIESTLSALQYVSSIVVSLEN 40 (90) T ss_dssp EEEEEEESCCHHH---HHHHHHHHHTTCTTEEEEEEETTT T ss_pred EEEEEECCCCCHH---HHHHHHHHHHCCCCCEEEEEECCC T ss_conf 6999989920478---799999997547870399999989 No 12 >>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} (X:) Probab=59.81 E-value=8.8 Score=19.35 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=25.2 Q ss_pred EEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 9999672222068999999999985398534069999707 Q gi|254780491|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 43 i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) +.|.++.-.|+ .=...++++|.++|||.++.|.+..+ T Consensus 4 ~~l~V~gm~C~---~C~~~Ie~~l~~~~GV~~~~v~~~~~ 40 (74) T 3dxs_X 4 IQVGVTGMTCA---ACSNSVEAALMNVNGVFKASVALLQN 40 (74) T ss_dssp EEEEEECCCSH---HHHHHHHHHHHTSTTEEEEEEEGGGT T ss_pred EEEEECCCCHH---HHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 99998997649---99999999997299957999984499 No 13 >>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} (A:69-171) Probab=59.14 E-value=13 Score=18.41 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=26.8 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC Q ss_conf 206899999999998539853406999970789 Q gi|254780491|r 52 AHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKN 84 (101) Q Consensus 52 ~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~ 84 (101) ..+...+..++++.|+.++||.++.|.++.+.+ T Consensus 17 ~~~~~ale~eL~~ti~~i~gV~~ArV~i~~p~~ 49 (103) T 1yj7_A 17 AKINYLKEQDIERLLSKIPGVIDCSVSLNVNNN 49 (103) T ss_dssp HHHHHHHHHHHHHHHTTSTTEEEEEEEEEC--- T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC T ss_conf 999999999999999816781378999957887 No 14 >>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} (A:1-72) Probab=58.73 E-value=8.6 Score=19.40 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=27.6 Q ss_pred CEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 87999999672222068999999999985398534069999707 Q gi|254780491|r 39 NTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 39 ~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) +.-.+.+.++.-.|+. =...++++|+++|||.++.|.+... T Consensus 4 ~~~~~~l~V~gm~C~~---C~~~ie~~l~~~~GV~~v~v~~~~~ 44 (72) T 1p6t_A 4 EQKEIAMQVSGMTCAA---CAARIEKGLKRMPGVTDANVNLATE 44 (72) T ss_dssp CCEEEEEEEESCCSSH---HHHHHHHHHTTSSSEEEEEEEGGGT T ss_pred CCEEEEEEECCCCCHH---HHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 8608999989957689---9999999986599938999991169 No 15 >>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A (B:) Probab=58.50 E-value=9.8 Score=19.10 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=26.5 Q ss_pred EEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 99999672222068999999999985398534069999707 Q gi|254780491|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 42 ~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) .+.+.++.-.|+. =...++++|..+|||.+++|.+..+ T Consensus 3 ~~~l~V~gm~C~~---C~~~I~~~l~~~~GV~~v~v~~~~~ 40 (75) T 3cjk_B 3 SVTISVEGMTCNS---CVWTIEQQIGKVNGVHHIKVSLEEK 40 (75) T ss_dssp EEEEEECCCCSHH---HHHHHHHHHHTSTTEEEEEEETTTT T ss_pred EEEEEECCEECHH---HHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 9999989900189---9999999997499958999994799 No 16 >>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} (A:) Probab=57.50 E-value=9.3 Score=19.22 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.8 Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 999999985398534069999707 Q gi|254780491|r 59 RSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 59 ~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) ...++++|+++|||.++.|.+..+ T Consensus 18 ~~~Ie~~l~~~~GV~~v~v~~~~~ 41 (72) T 1aw0_A 18 VQSIEGVISKKPGVKSIRVSLANS 41 (72) T ss_dssp HHHHHHHHHTSTTCCCEEEETTTT T ss_pred HHHHHHHHHCCCCCEEEEEECCCC T ss_conf 999999872689967999988899 No 17 >>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A (A:) Probab=57.36 E-value=7.7 Score=19.68 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=19.8 Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 999999985398534069999707 Q gi|254780491|r 59 RSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 59 ~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) ...++++|+++|||.+++|.+..+ T Consensus 18 ~~~v~~~l~~~~GV~~v~v~~~~~ 41 (71) T 2aj0_A 18 AAKFERNVKEIEGVTEAIVNFGAS 41 (71) T ss_dssp HHHHHHHHHHSTTEEEEEECCSSE T ss_pred HHHHHHHHCCCCCCEEEEEECCCC T ss_conf 999999872379944999989899 No 18 >>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} (A:) Probab=56.89 E-value=8.6 Score=19.41 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=25.7 Q ss_pred EEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 999999672222068999999999985398534069999707 Q gi|254780491|r 41 VYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 41 v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) -.+.+.++.-.|.. =...++++|..+|||.++.|.+..+ T Consensus 6 ~~~~l~V~gm~C~~---C~~~ie~~l~~~~GV~~v~v~~~~~ 44 (76) T 1opz_A 6 KEIAMQVSGMTCAA---CAARIEKGLKRMPGVTDANVNLATE 44 (76) T ss_dssp EEEEEEEESCCSTT---HHHHHHHHHHTSTTEEEEEEEGGGT T ss_pred EEEEEEECCCCCHH---HHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 79999999934389---9999999997499957999987899 No 19 >>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} (A:1-73) Probab=56.46 E-value=4.6 Score=20.92 Aligned_cols=37 Identities=8% Similarity=0.212 Sum_probs=25.9 Q ss_pred EEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 7999999672222068999999999985398534069999707 Q gi|254780491|r 40 TVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 40 ~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) ++.+.+.+.-..| ...++++|.+++||.++.|.+... T Consensus 7 ~~~l~vgm~C~~C------~~~Ie~~l~~~~GV~~v~V~~~~~ 43 (73) T 1qup_A 7 EATYAIPXHCENC------VNDIKACLKNVPGINSLNFDIEQQ 43 (73) T ss_dssp EEEEECCCCSTTH------HHHHHHHHTTCTTEEEEEEETTTT T ss_pred EEEEEEEEECHHH------HHHHHHHHHCCCCEEEEEEECCCC T ss_conf 9999990582899------999999986699906999987899 No 20 >>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} (A:77-149) Probab=55.33 E-value=11 Score=18.86 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=25.3 Q ss_pred EEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 99999672222068999999999985398534069999707 Q gi|254780491|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 42 ~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) .+.+.++.-.|.. =...++++|..+|||.++.+.+..+ T Consensus 5 ~~~l~V~gm~C~~---C~~~ie~~l~~l~GV~~v~vn~~~~ 42 (73) T 2ew9_A 5 NIELTITGMTCAS---CVHNIESKLTRTNGITYASVALATS 42 (73) T ss_dssp EEEEEEESCCSHH---HHHHHHHHHHHSSSCCEEEEETTTT T ss_pred EEEEECCCCCCCH---HHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 7876237887131---2689999996799908998216788 No 21 >>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} (A:) Probab=54.15 E-value=14 Score=18.17 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=29.5 Q ss_pred CCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 698799999967222206899999999998539853406999970 Q gi|254780491|r 37 VHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 37 ~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) ..+.-.+.|.++.-.|+.= ...++++|..++||.++.|.+.. T Consensus 4 ~~~~~~~~l~V~gm~C~~C---~~~I~~~l~~~~GV~~~~v~~~~ 45 (79) T 1kvi_A 4 SMGVNSVTISVEGMTCNSC---VWTIEQQIGKVNGVHHIKVSLEE 45 (79) T ss_dssp TTTCEEEEEEECCCCSTTT---HHHHHHHHHHSSSCCCEEEEGGG T ss_pred CCCCEEEEEEECCEECHHH---HHHHHHHHHCCCCCEEEEEECCC T ss_conf 8883599999899464899---99999998608996699999889 No 22 >>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, metal transport; NMR {Helicobacter pylori 26695} (A:) Probab=54.10 E-value=6.5 Score=20.09 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=26.1 Q ss_pred EEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 9999672222068999999999985398534069999707 Q gi|254780491|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 43 i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) ..+.++.-.|.. =...++++|+++|||.++.+.+..+ T Consensus 3 ~~l~V~gm~C~~---C~~~Ie~~l~~~~gV~~v~v~l~~~ 39 (66) T 1yg0_A 3 ATFQVPSITCNH---CVDKIEKFVGEIEGVSFIDVSVEKK 39 (66) T ss_dssp EEECCTTCSCSH---HHHHHHHHHTTSSSEEEEEEETTTT T ss_pred EEEEECCCCCHH---HHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 999989917589---9999999997189946999988899 No 23 >>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} (A:105-202) Probab=51.92 E-value=12 Score=18.51 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=31.2 Q ss_pred CCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 6987999999672222068999999999985398534069999707 Q gi|254780491|r 37 VHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 37 ~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) .++.-.+.|.++.-.|+.= ...++++|+.++||.++.|.+..+ T Consensus 14 ~~~~~~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~~~v~~~~~ 56 (98) T 2rop_A 14 QGTCSTTLIAIAGMTCASC---VHSIEGMISQLEGVQQISVSLAEG 56 (98) T ss_dssp --CCEEEEEEESCCCSTHH---HHHHHHHGGGSSSEEEEEEETTTT T ss_pred CCCCEEEEEECCCCCCHHH---HHHHHHHHHCCCCCEEEEEECCCC T ss_conf 7764389996168766136---688988875389945999989899 No 24 >>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} (A:) Probab=49.82 E-value=7.1 Score=19.89 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=26.4 Q ss_pred EEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC Q ss_conf 999996722220689999999999853985340699997078 Q gi|254780491|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENK 83 (101) Q Consensus 42 ~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~ 83 (101) .+.+.++.-.|+. =...++++|+.+|||.++.|.+..++ T Consensus 4 ~~~l~V~gm~C~~---C~~~Ie~~l~~~~GV~~~~v~~~~~~ 42 (72) T 1osd_A 4 TVTLSVPGMTCSA---CPITVKKAISKVEGVSKVDVTFETRQ 42 (72) T ss_dssp EEEEECTTCCSTT---HHHHHHHHHHTSTTEEEEEEETTTTE T ss_pred EEEEEECCCCHHH---HHHHHHHHHHCCCCCEEEEEECCCCE T ss_conf 8999989971089---99999999974999689999867999 No 25 >>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} (A:) Probab=48.58 E-value=18 Score=17.66 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=30.9 Q ss_pred CCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC Q ss_conf 3369879999996722220689999999999853985340699997078 Q gi|254780491|r 35 FIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENK 83 (101) Q Consensus 35 ~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~ 83 (101) .-..+.-.+.|.++.-.|..= ...++.+|..++||.++.|.+..++ T Consensus 10 ~~~~~~~~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~~~~ 55 (95) T 2kkh_A 10 KKVKKLQKSYFDVLGICCTSE---VPIIENILKSLDGVKEYSVIVPSRT 55 (95) T ss_dssp CCSSCSEEEEEEETTCCTTTT---HHHHHHHHHHSSSEEEEEEETTTTE T ss_pred HHHHCEEEEEEEECCCCCHHH---HHHHHHHHHCCCCCEEEEEECCCCE T ss_conf 431214899999898066889---9999999974998059998767998 No 26 >>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A (A:) Probab=47.75 E-value=9.4 Score=19.18 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=20.6 Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 9999999985398534069999707 Q gi|254780491|r 58 LRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 58 l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) =...++++|+.++|+.++.|.+... T Consensus 14 C~~~ie~~l~~~~gV~~v~v~~~~~ 38 (66) T 2roe_A 14 CVMAVTKALKKVPGVEKVEVSLEKG 38 (66) T ss_dssp HHHHHHHHHHTSTTCCCEEECSSSC T ss_pred HHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 8999999986599928999986888 No 27 >>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=47.58 E-value=8.6 Score=19.42 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=27.6 Q ss_pred CEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 8799999967222206899999999998539853406999970 Q gi|254780491|r 39 NTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 39 ~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) ..+.+.+-++...| ...++++|++++||.++.|.+.. T Consensus 19 ~~~~l~vgM~C~~C------~~~Ie~~l~~~~GV~~v~v~~~~ 55 (98) T 2crl_A 19 CTLEFAVQMTCQSC------VDAVRKSLQGVAGVQDVEVHLED 55 (98) T ss_dssp EEEEEEECCCSHHH------HHHHHHTTTTCTTCCEEEEETTT T ss_pred EEEEEEECCCCHHH------HHHHHHHHHCCCCCEEEEEECCC T ss_conf 89999983298899------99999999668992389998889 No 28 >>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} (A:) Probab=44.77 E-value=25 Score=16.83 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=23.5 Q ss_pred EEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 99996722220689999999999853985340699997 Q gi|254780491|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 43 i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) +.+.++.-.|. .=...++++|.+++||.++.|.+. T Consensus 4 ~~l~V~gm~C~---~C~~~ie~~l~~~~GV~~v~v~~~ 38 (69) T 2qif_A 4 KTLQVEGMSCQ---HCVKAVETSVGELDGVSAVHVNLE 38 (69) T ss_dssp EEEEEECCCSH---HHHHHHHHHHHTSTTEEEEEEETT T ss_pred EEEEECCCCCH---HHHHHHHHHHHCCCCCEEEEEECC T ss_conf 99999992368---999999999971999479999887 No 29 >>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} (A:1-76) Probab=44.03 E-value=11 Score=18.75 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=24.7 Q ss_pred EEEEEEE-ECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 7999999-67222206899999999998539853406999970 Q gi|254780491|r 40 TVYLSIT-VPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 40 ~v~i~l~-l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) ++.|.+. +..+.| ...++++|+.++||.++.|.+.. T Consensus 5 ~~~l~v~gm~C~~C------~~~Ie~al~~~~GV~~v~v~~~~ 41 (76) T 2ew9_A 5 KCFLQIKGMTCASC------VSNIERNLQKEAGVLSVLVALMA 41 (76) T ss_dssp EEEEEEECCCSSSH------HHHHHHHHHTTSSCCCEEEETTT T ss_pred EEEEEECCCCCHHH------HHHHHHHHHCCCCHHHHEEHHCC T ss_conf 99999899757889------99999999639984653000205 No 30 >>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (A:147-213,A:367-401) Probab=43.38 E-value=21 Score=17.18 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=52.5 Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCC-----EE--EEEEEECHHHCHHHHHHHHHHHHHHHCC Q ss_conf 58999999841418799976232387010133698-----79--9999967222206899999999998539 Q gi|254780491|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHN-----TV--YLSITVPHTIAHQLQSLRSNAQQIIQNI 69 (101) Q Consensus 5 ~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~-----~v--~i~l~l~~~~~~~~~~l~~~i~~~l~~i 69 (101) .-+-+.+|...+.+++.++.-+++.+|+=..+.|| .+ .+++-+-+......+...+.+..||.-+ T Consensus 25 la~lvVdAv~~v~~~~~~~~~vDl~~I~I~K~~Ggsl~dS~LVka~ti~lrG~~~~~lde~eRsl~Dal~vv 96 (102) T 1a6d_A 25 LADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFIKAVSILIRGGTDHVVSEVERALNDAIRVV 96 (102) T ss_dssp HHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESCEEEEECCSSSTTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 999998640121112577520233236999970771452147564599993650889999988888788878 No 31 >>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, protein folding, ATPase; 2.60A {Thermoplasma acidophilum} (B:147-215,B:368-402) Probab=42.95 E-value=16 Score=17.90 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=50.6 Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCE-----E---EEEEEECHHHCHHHHHHHHHHHHHHHCC Q ss_conf 589999998414187999762323870101336987-----9---9999967222206899999999998539 Q gi|254780491|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNT-----V---YLSITVPHTIAHQLQSLRSNAQQIIQNI 69 (101) Q Consensus 5 ~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~-----v---~i~l~l~~~~~~~~~~l~~~i~~~l~~i 69 (101) .-+-+.+|...+.+++.++.-+++.+|+=..+.||. + .+++-+-++.....+.+.+.+..+|.-+ T Consensus 26 la~lvVdAv~~V~~~~~~~~~vDl~~I~I~K~~Ggs~~dS~LV~~a~ti~lRG~~~~~ldE~eRsl~Dal~vv 98 (104) T 1a6d_B 26 LAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINKAVSILVRGETEHVVDEMERSITDSLHVV 98 (104) T ss_dssp HHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCEEECEEECEEEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 7778888775420013555245304089999738702205243326999946875668987763467899999 No 32 >>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} (A:) Probab=42.36 E-value=13 Score=18.41 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=27.8 Q ss_pred CCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 9879999996722220689999999999853985340699997 Q gi|254780491|r 38 HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 38 ~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) ++...+.|.++.-.|+.= ...++++|..++||.+++|.+. T Consensus 6 ~~~~~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~ 45 (84) T 1q8l_A 6 AGEVVLKMKVEGMTCHSC---TSTIEGKIGKLQGVQRIKVSLD 45 (84) T ss_dssp SSCEEEEEEECCTTTCSS---CHHHHHHHHTCTTEEEEEECST T ss_pred CCCEEEEEEECCEECHHH---HHHHHHHHHCCCCCEEEEEECC T ss_conf 886799999799286899---9999999865799569999988 No 33 >>1sb6_A Copper chaperone scatx1; structure, NEW metal binding motif, structural proteomics in europe, spine, structural genomics; NMR {Synechocystis SP} (A:) Probab=42.28 E-value=7.4 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.5 Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 999999985398534069999707 Q gi|254780491|r 59 RSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 59 ~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) ...++++|+++||+.++.|.+..+ T Consensus 16 ~~~I~~~l~~~~GV~~v~v~~~~~ 39 (64) T 1sb6_A 16 AEAVTKAVQNEDAQATVQVDLTSK 39 (64) T ss_dssp THHHHHHHHHHCTTCEEEEETTTT T ss_pred HHHHHHHHHCCCCEEEEECCCCCC T ss_conf 899999996499937987146876 No 34 >>1cpz_A Protein (COPZ); copper chaperone, metal transport; NMR {Enterococcus hirae} (A:) Probab=41.06 E-value=12 Score=18.67 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=23.7 Q ss_pred EEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 99967222206899999999998539853406999970 Q gi|254780491|r 44 SITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 44 ~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) .+.++.-.|+. =...++++|..+|||.++++.+.. T Consensus 3 ~l~V~gm~C~~---C~~~Ie~~l~~~~GV~~v~v~~~~ 37 (68) T 1cpz_A 3 EFSVKGMSCNH---CVARIEEAVGRISGVKKVKVQLKK 37 (68) T ss_dssp EEEESCCCSSS---HHHHHHHHHHTSTTEEEEEEETTT T ss_pred EEEECCEECHH---HHHHHHHHHHCCCCCEEEEEECCC T ss_conf 88989863389---999999887569993799998679 No 35 >>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination; 1.02A {Saccharomyces cerevisiae} (A:) Probab=40.69 E-value=12 Score=18.57 Aligned_cols=37 Identities=8% Similarity=0.282 Sum_probs=25.6 Q ss_pred EEEEEEEECHHHCHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEC Q ss_conf 799999967222206899999999998539-8534069999707 Q gi|254780491|r 40 TVYLSITVPHTIAHQLQSLRSNAQQIIQNI-PTVKNAVVTLTEN 82 (101) Q Consensus 40 ~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i-~gv~~v~V~lt~~ 82 (101) .+.|...+.-..| .+.++++|+++ +|+.++.|.+..+ T Consensus 6 ~~~~~vgM~C~~C------~~~Ie~al~~l~~GV~~v~v~l~~~ 43 (73) T 1cc8_A 6 HYQFNVVMTCSGC------SGAVNKVLTKLEPDVSKIDISLEKQ 43 (73) T ss_dssp EEEEEECCCSHHH------HHHHHHHHHTTTTSEEEEEEETTTT T ss_pred EEEEEECCCCHHH------HHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 9999983093898------9999999964767338999988998 No 36 >>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:) Probab=39.47 E-value=16 Score=17.89 Aligned_cols=43 Identities=9% Similarity=-0.039 Sum_probs=29.6 Q ss_pred CCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 6987999999672222068999999999985398534069999707 Q gi|254780491|r 37 VHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 37 ~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) ..+.-...|.++.-.|. .=...++.+|+.++||.++.|.+..+ T Consensus 18 ~~~~~~~~l~V~gm~C~---~C~~~Ie~~l~~~~GV~~v~v~~~~~ 60 (85) T 2k2p_A 18 YFQGAGLSFHVEDMTCG---HCAGVIKGAIEKTVPGAAVHADPASR 60 (85) T ss_dssp ----CEEEEECTTCCHH---HHHHHHHHHHHHHSTTCEEEEETTTT T ss_pred HCCCCEEEEEECCCCCH---HHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 33688699997990968---99999999997499924999877899 No 37 >>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} (B:1-76) Probab=39.35 E-value=13 Score=18.49 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=25.9 Q ss_pred EEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 799999967222206899999999998539853406999970 Q gi|254780491|r 40 TVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 40 ~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) ++.+.+.+.-..|. ..++++|.+++||.++.+.+.. T Consensus 8 ~~~~~vgm~C~~C~------~~Ie~~l~~~~GV~~v~v~~~~ 43 (76) T 1jk9_B 8 EATYAIPMHCENCV------NDIKACLKNVPGINSLNFDIEQ 43 (76) T ss_dssp EEEEECCCCSSSHH------HHHHHHHTTCTTEEEEEEETTT T ss_pred EEEEEECEECHHHH------HHHHHHHHCCCCCEEEEEECCC T ss_conf 89999860968999------9999998659991699998889 No 38 >>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} (A:73-151) Probab=39.23 E-value=16 Score=17.92 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=25.0 Q ss_pred EEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 999996722220689999999999853985340699997 Q gi|254780491|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 42 ~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) .+.|.++.-.|+.= ...++++|+.++||.++.|.+. T Consensus 3 ~~~l~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~ 38 (79) T 1p6t_A 3 KAEFDIEGMTCAAC---ANRIEKRLNKIEGVANAPVNFA 38 (79) T ss_dssp EEEEEESSCCSSSH---HHHHHHHHTTSSSEEECCEETT T ss_pred EEEEEECCCCCHHH---HHHHHHHHHCCCCEEEEEEECC T ss_conf 45784068875789---9999987412798589999767 No 39 >>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} (A:1-104) Probab=38.55 E-value=22 Score=17.16 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=27.7 Q ss_pred EEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 7999999672222068999999999985398534069999707 Q gi|254780491|r 40 TVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (101) Q Consensus 40 ~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (101) .-.+.|.++.-.|..= ...++++|..++||.++.|.+..+ T Consensus 19 ~~~~~l~V~Gm~C~~C---~~~ie~~l~~~~gV~~v~v~~~~~ 58 (104) T 2rop_A 19 VVTLQLRIDGMHCKSC---VLNIEENIGQLLGVQSIQVSLENK 58 (104) T ss_dssp -CEEEEEEESGGGSTH---HHHHHHHTTSBTTEEEEEEETTTT T ss_pred EEEEEEEECCEECHHH---HHHHHHHHHCCCCCEEEEEECCCC T ss_conf 2899999899025899---999999974599907999975699 No 40 >>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} (A:) Probab=37.21 E-value=15 Score=18.08 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=24.1 Q ss_pred EEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 999967222206899999999998539853406999970 Q gi|254780491|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 43 i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) +.+.++.-.|.. =...++++|+.+|||.+++|.+.. T Consensus 5 ~~l~V~gm~C~~---C~~~Ie~~l~~~~GV~~~~v~~~~ 40 (80) T 1jww_A 5 AEFDIEGMTCAA---CANRIEKRLNKIEGVANAPVNFAL 40 (80) T ss_dssp EEEEEESCCCHH---HHHHHHHHHHTSTTEEECCCCSSS T ss_pred EEEEECCCCHHH---HHHHHHHHHHCCCCCEEEEEECCC T ss_conf 999989976388---899999999639994799998779 No 41 >>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} (A:) Probab=36.20 E-value=24 Score=16.91 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=24.0 Q ss_pred EEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 99996722220689999999999853985340699997 Q gi|254780491|r 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 43 i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) +.+.++.-.|+. =...++++|+.++||.++.|.+. T Consensus 4 ~~l~V~gm~C~~---C~~~Ie~~l~~~~GV~~v~v~~~ 38 (72) T 1fvq_A 4 VILAVHGMTCSA---CTNTINTQLRALKGVTKCDISLV 38 (72) T ss_dssp EEEEECSCCSHH---HHHHHHHHHHTSSSEEEECCBTT T ss_pred EEEEECCCCCHH---HHHHHHHHHHCCCCCEEEEEECC T ss_conf 999979961589---99999999975999469999888 No 42 >>2gcf_A Cation-transporting ATPase PACS; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, structural genomics, structural proteomics in europe; NMR {Synechocystis SP} (A:) Probab=36.06 E-value=11 Score=18.89 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=23.6 Q ss_pred EEEEEE-ECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 999999-67222206899999999998539853406999970 Q gi|254780491|r 41 VYLSIT-VPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 41 v~i~l~-l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) +.|.+. +..+.|. ..++++|+.+|||.++.|.+.. T Consensus 5 ~~~~V~gm~C~~C~------~~Ie~~l~~~~gV~~v~v~~~~ 40 (73) T 2gcf_A 5 INLQLEGMRCAACA------SSIERAIAKVPGVQSCQVNFAL 40 (73) T ss_dssp EEEEEESCCSSTTT------HHHHHHHTTSTTEEEEEECTTT T ss_pred EEEEECCCCCHHHH------HHHHHHHHCCCCCEEEEEECCC T ss_conf 99997893458999------9999998638994799998889 No 43 >>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A (A:) Probab=34.65 E-value=16 Score=17.87 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=19.1 Q ss_pred HHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 99999998539853406999970 Q gi|254780491|r 59 RSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 59 ~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) ...++++|+.++||.++.+.+.. T Consensus 19 ~~~ie~~l~~~~GV~~v~v~~~~ 41 (75) T 1yjr_A 19 VHKIESSLTKHRGILYCSVALAT 41 (75) T ss_dssp HHHHHHHHTTSTTEEEEEEETTT T ss_pred HHHHHHHHHCCCCCEEEEEECCC T ss_conf 99999998528995699998779 No 44 >>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A (A:) Probab=34.30 E-value=18 Score=17.62 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=25.5 Q ss_pred EEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 9999967222206899999999998539853406999970 Q gi|254780491|r 42 YLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 42 ~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) .+.+.++.-.|..- ...++++|+.+|||.+++|.+.. T Consensus 4 ~~~~~V~gm~C~~C---~~~Ie~~l~~~~GV~~v~v~~~~ 40 (77) T 1y3j_A 4 KCYIQVTGMTCASC---VANIERNLRREEGIYSILVALMA 40 (77) T ss_dssp EEEEEESCGGGCSH---HHHHHHHHTTSSSEEECCCBTTT T ss_pred EEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEEECCC T ss_conf 69999899106899---99999999728994799998889 No 45 >>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} (A:149-217,A:369-404) Probab=29.49 E-value=36 Score=15.89 Aligned_cols=65 Identities=9% Similarity=0.185 Sum_probs=49.4 Q ss_pred CHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCE-----E----EEEEEECHHHCHHHHHHHHHHHHHHHCC Q ss_conf 589999998414187999762323870101336987-----9----9999967222206899999999998539 Q gi|254780491|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNT-----V----YLSITVPHTIAHQLQSLRSNAQQIIQNI 69 (101) Q Consensus 5 ~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~~~-----v----~i~l~l~~~~~~~~~~l~~~i~~~l~~i 69 (101) .-+-+.+|...+.+.+.++.-+++.+|+=..+.||. + .+++-+-++.....+++++.++.+|..+ T Consensus 26 la~lvvdAv~~v~~~~~~~~~vDl~~I~I~K~~Ggs~~dS~lV~~ka~TiilRG~~~~~ldE~eRsi~Dal~vv 99 (105) T 1q3q_A 26 LAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRPKAVTILIRGGTEHVIDEVERALEDAVKVV 99 (105) T ss_dssp HHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESCSSEEEEEEESSHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCEEEEECCCCCCEEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999751134567740220220599843787501004423884899989997788999999999999999 No 46 >>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} (A:196-323) Probab=24.67 E-value=54 Score=14.90 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=47.9 Q ss_pred HHHHHHHHCCCC---CCCCCHHHCCCC---CCCCCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEE Q ss_conf 999998414187---999762323870---1013369879999996722220689999999999853985340699997 Q gi|254780491|r 8 QIVDSLKVLSIP---GEKNNIVEMQRL---SEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLT 80 (101) Q Consensus 8 ~I~~~L~~v~dP---~~~~~iv~~g~V---~~i~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt 80 (101) .++..|..+.+. ..+...+..+.+ ....+-.+++.+.+.+-+......+.+...+++.+..+..-..+++.+. T Consensus 37 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~NvvP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 115 (128) T 1ysj_A 37 QIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEXEGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQAEFK 115 (128) T ss_dssp HHHHHHC-----------CCEEEEEEEEECSCSSSCCSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 9999998631013233553002059996797453732420468760233167778888899887524533323343111 No 47 >>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} (A:109-149) Probab=24.23 E-value=49 Score=15.15 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=26.3 Q ss_pred CCCCCEEEEEEEECHHHCHHHHHHHHHHHHHH Q ss_conf 33698799999967222206899999999998 Q gi|254780491|r 35 FIVHNTVYLSITVPHTIAHQLQSLRSNAQQII 66 (101) Q Consensus 35 ~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l 66 (101) .+..|.+.+.+............+++++++.+ T Consensus 8 vv~rg~l~IaIST~G~sP~lak~iR~~ie~~l 39 (41) T 1pjq_A 8 IIDRSPLMVAVSXGGTSPVLARLLREKLESLL 39 (41) T ss_dssp EEEETTEEEEEECTTSCHHHHHHHHHHHHHHS T ss_pred EEECCCEEEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 99728859986159988188999999998756 No 48 >>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:135-181,A:275-329,A:568-673) Probab=23.00 E-value=59 Score=14.71 Aligned_cols=45 Identities=7% Similarity=0.024 Sum_probs=31.4 Q ss_pred CCCEEEEEEEECHHH-CHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 698799999967222-206899999999998539853406999970 Q gi|254780491|r 37 VHNTVYLSITVPHTI-AHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 37 ~~~~v~i~l~l~~~~-~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) +.|.+.+.+++|.-. ....++..+++++.|.+.+++..+...... T Consensus 103 D~g~i~v~v~~P~Gtsle~T~~~~~~ie~~l~~~~~v~~~~~~~G~ 148 (208) T 2j8s_A 103 DQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVN 148 (208) T ss_dssp CCSEEEEEEECCTTCCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 0567777755433013999999999999987402688605899740 No 49 >>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus HB8} (A:63-152) Probab=22.60 E-value=60 Score=14.67 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=40.3 Q ss_pred CCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCC-CEEEEEEEECHHHC Q ss_conf 035899999984141879997623238701013369-87999999672222 Q gi|254780491|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVH-NTVYLSITVPHTIA 52 (101) Q Consensus 3 ~~~~~~I~~~L~~v~dP~~~~~iv~~g~V~~i~i~~-~~v~i~l~l~~~~~ 52 (101) .++-+++...+..+.+++...--..++.+.++++.+ ..+.|.+.-|++.. T Consensus 36 p~ta~Dv~~s~~~~~~~~~~~~~~~~~~i~~i~~~d~~tv~i~l~~p~~~~ 86 (90) T 2d5w_A 36 PITTEDVAFYFEVGKAKGMPVLNPDFWERVNVRIKDARNFTLIFEPAYYYD 86 (90) T ss_dssp BCCHHHHHHHHHHHHSTTCCCSCHHHHHHEEEEECSSSEEEEEESSCCTTT T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCHHCEEEEEECCCEEEEEECCCCCCH T ss_conf 957999999999985679874551310004799841763899955765310 No 50 >>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A (A:165-286) Probab=21.32 E-value=64 Score=14.52 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=43.0 Q ss_pred HHCCCCC---CCCCCCCEEEEEEEECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 3238701---0133698799999967222206899999999998539853406999970 Q gi|254780491|r 26 VEMQRLS---EIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81 (101) Q Consensus 26 v~~g~V~---~i~i~~~~v~i~l~l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~ 81 (101) +..|.+. ...+-.+.+.+.+.+-++.....+.+.+++++.++....-..+.+.+.+ T Consensus 62 ~~~~~i~gg~~~N~Ip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~a~~~~~~~~~~~ 120 (122) T 2f7v_A 62 FNIGRVDGGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPAAAHFEETFRGPS 120 (122) T ss_dssp EEEEEEEECSSTTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSSCCSEEEEEEEECC T ss_pred ECCEEEECCEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCC T ss_conf 01203532210122365010110235788568999999999987765300564203577 No 51 >>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, structural genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X (X:) Probab=20.39 E-value=13 Score=18.39 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=22.4 Q ss_pred ECHHHCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC Q ss_conf 6722220689999999999853985340699997078 Q gi|254780491|r 47 VPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENK 83 (101) Q Consensus 47 l~~~~~~~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~ 83 (101) ++...|.. .++.+|++++||.+++|.+...+ T Consensus 12 m~C~~C~~------~Ie~~L~~~~GV~~~~vn~~~~~ 42 (111) T 2ofg_X 12 MDCTSCKL------KIEGSLERLKGVAEASVTVATGR 42 (111) T ss_dssp EEESCCCG------GGTHHHHHHHHTTSSSEEEEEEE T ss_pred EEECCCCC------HHHHHHHHHHHHCCCCEEEEEEE T ss_conf 99899035------89999999886236742589998 Done!