RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus
Liberibacter asiaticus str. psy62]
         (101 letters)



>gnl|CDD|183904 PRK13231, PRK13231, nitrogenase reductase-like protein; Reviewed.
          Length = 264

 Score = 30.2 bits (68), Expect = 0.13
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 33  EIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTE 81
           E++IV +  Y+S+   + IA  ++ L+     II N   + N V  ++E
Sbjct: 141 EVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRGIDNEVEIVSE 189


>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
          family.  In the case of PUF60 (GP|6176532), in complex
          with p54, and in the presence of U2AF, facilitates
          association of U2 snRNP with pre-mRNA.
          Length = 612

 Score = 28.1 bits (62), Expect = 0.57
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 57 SLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNV 94
          S     Q +    P V   +  L +   PPQQ   + V
Sbjct: 1  SADIENQPVAAFRPAVSVPMPVLGDKWKPPQQTGEVKV 38


>gnl|CDD|165315 PHA03016, PHA03016, hypothetical protein; Provisional.
          Length = 441

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 13  LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTV 72
           L +L  P +K  I  ++  + IF++ N   +       I  Q+Q+L  +  +  + I  +
Sbjct: 233 LDILFTPDKKIEINNIEISNNIFLIDNKQNV-------INDQIQNLFHSFIKKHKIIKEI 285

Query: 73  KNAVVTLTENKNPPQQRNNLNVK 95
            N ++   + K+      N N+K
Sbjct: 286 NNFIILFNKYKDELSFNINQNLK 308


>gnl|CDD|149371 pfam08283, Gemini_AL1_M, Geminivirus rep protein central domain. 
          This is the cetral domain of the geminivirus rep
          proteins.
          Length = 106

 Score = 26.2 bits (58), Expect = 1.8
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 42 YLSI---TVPHTIAHQLQSLRSNAQQIIQNIP 70
           LSI     P   A QL +L  NA ++  + P
Sbjct: 21 ALSIIKEEFPKDWALQLHNLEYNANRLFPDPP 52


>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase
           N; Provisional.
          Length = 342

 Score = 25.7 bits (56), Expect = 2.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 8   QIVDS-LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQII 66
           +IVD  L+V  I G++   V    + E    HN  Y ++    +I H   +    A++I 
Sbjct: 137 EIVDQVLQVEKIVGDRATNVVFMGMGEPM--HN--YFNVIRAASILHDPDAFNLGAKRIT 192

Query: 67  QNIPTVKNAVVTLTENKNP 85
            +   V N +    ENK P
Sbjct: 193 ISTSGVVNGIRRFIENKEP 211


>gnl|CDD|178385 PLN02788, PLN02788, phenylalanine-tRNA synthetase.
          Length = 402

 Score = 25.5 bits (56), Expect = 3.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 49  HTIAHQLQSLRSNAQQ 64
           HT AHQ + LR+    
Sbjct: 134 HTSAHQAELLRAGHTH 149


>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase.  DXP
           synthase is a thiamine diphosphate-dependent enzyme
           related to transketolase and the pyruvate dehydrogenase
           E1-beta subunit. By an acyloin condensation of pyruvate
           with glyceraldehyde 3-phosphate, it produces
           1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
           diphosphate (TPP), pyridoxal phosphate, and the
           isoprenoid building block isopentenyl diphosphate (IPP).
          Length = 617

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 56  QSLRSNAQQIIQNIPTVKNAVVTLTE 81
           QSLR   ++I   +P +KN +   TE
Sbjct: 196 QSLRDGLKKIFSKLPPIKNYLAKRTE 221


>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed.
          Length = 1066

 Score = 25.1 bits (56), Expect = 4.7
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 3    QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVY 42
            + L+   +    V  +   + +IV++ +  EI +V NT  
Sbjct: 974  KFLREAGIPVELVNKVHEGRPHIVDLIKNGEIDLVINTPT 1013


>gnl|CDD|162144 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase
           (non-peptidoglycan organisms).  Two closely related
           families of aspartate-semialdehyde dehydrogenase are
           found. They differ by a deep split in phylogenetic and
           percent identity trees and in gap patterns. Separate
           models are built for the two types in order to exclude
           the USG-1 protein, found in several species, which is
           specifically related to the Bacillus subtilis type of
           aspartate-semialdehyde dehydrogenase. Members of this
           type are found primarily in organisms that lack
           peptidoglycan.
          Length = 341

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 48  PHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAV 100
              I   L+S R   Q++   +P+     + + + ++ PQ R + +    +AV
Sbjct: 253 IEEIREALKSFRGLPQKL--GLPSAPEKPIIVRDEEDRPQPRLDRDAGGGMAV 303


>gnl|CDD|162409 TIGR01539, portal_lambda, phage portal protein, lambda family.
          This model represents one of several distantly related
          families of phage portal protein. This protein forms a
          hole, or portal, that enables DNA passage during
          packaging and ejection. It also forms the junction
          between the phage head (capsid) and the tail proteins.
          It functions as a dodecamer of a single polypeptide of
          average mol. wt. of 40-90 KDa.
          Length = 458

 Score = 24.8 bits (54), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 51 IAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82
          I   L+ LR+ A+ +++N   V NA+    +N
Sbjct: 22 ILQALRLLRARARDLVRNNDIVANAIDLHKDN 53


>gnl|CDD|184766 PRK14610, PRK14610, 4-diphosphocytidyl-2-C-methyl-D-erythritol
          kinase; Provisional.
          Length = 283

 Score = 24.3 bits (53), Expect = 8.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 20 GEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQ-QIIQNIPT 71
          G KN  VE     +I   +NTV  +I     + H    +R+N   ++I+NIP 
Sbjct: 47 GSKNRGVEFVNSLKINRYNNTVQRAIG--LLLRH--SPVRTNVYVKVIKNIPV 95


>gnl|CDD|182591 PRK10618, PRK10618, phosphotransfer intermediate protein in
           two-component regulatory system with RcsBC; Provisional.
          Length = 894

 Score = 24.1 bits (53), Expect = 8.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)

Query: 52  AHQLQSLRSNAQQIIQNIP 70
           +H+L+ LR+  ++I+ N+P
Sbjct: 335 SHELRILRALNEEIVSNLP 353


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,502,561
Number of extensions: 77164
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 30
Length of query: 101
Length of database: 5,994,473
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,525,129
Effective search space: 149329257
Effective search space used: 149329257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)