RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] (101 letters) >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 Score = 24.3 bits (53), Expect = 2.6 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNA 62 ++L + I + ++ P Q F ++++I IA LQS + Sbjct: 76 KVLTSDIERFMPIVYTPTVGLAC---QHYGLAFRRPRGLFITIHDRGHIATMLQSWPESV 132 Query: 63 QQII 66 + I Sbjct: 133 IKAI 136 >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 Score = 24.3 bits (53), Expect = 3.0 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Query: 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQS 57 +IL++ I + ++ P + IF +++SI+ + + + Sbjct: 78 RILQDDIESLMPIVYTPTVGLAC---SQYGHIFRRPKGLFISISDRGHVRSIVDN 129 >d2ejqa1 d.92.1.17 (A:2-108) Uncharacterized protein TTHA0227 {Thermus thermophilus [TaxId: 274]} Length = 107 Score = 24.0 bits (52), Expect = 4.1 Identities = 6/15 (40%), Positives = 9/15 (60%) Query: 45 ITVPHTIAHQLQSLR 59 T+ H + H L+SL Sbjct: 90 ETMLHELRHHLESLA 104 >d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118 Score = 23.0 bits (49), Expect = 7.8 Identities = 5/30 (16%), Positives = 11/30 (36%) Query: 59 RSNAQQIIQNIPTVKNAVVTLTENKNPPQQ 88 + A+ +Q + L PP++ Sbjct: 81 LAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.316 0.129 0.343 Gapped Lambda K H 0.267 0.0650 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 320,351 Number of extensions: 11721 Number of successful extensions: 31 Number of sequences better than 10.0: 1 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 9 Length of query: 101 Length of database: 2,407,596 Length adjustment: 62 Effective length of query: 39 Effective length of database: 1,556,336 Effective search space: 60697104 Effective search space used: 60697104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.0 bits)