BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] (101 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 201 bits (510), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 101/101 (100%), Positives = 101/101 (100%) Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60 Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101 >gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 197 bits (501), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/101 (100%), Positives = 101/101 (100%) Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60 Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101 >gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 197 bits (501), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/101 (100%), Positives = 101/101 (100%) Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60 Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 25.4 bits (54), Expect = 0.21, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 21/31 (67%) Query: 55 LQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85 L ++ S ++++ + IP+++ VVT TEN P Sbjct: 389 LLNIPSISEKVKKTIPSLRRIVVTCTENGYP 419 >gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter asiaticus str. psy62] Length = 162 Score = 22.3 bits (46), Expect = 1.7, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 18/32 (56%) Query: 13 LKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLS 44 L V+ IP EKN I + L+ I + + + LS Sbjct: 8 LTVIPIPNEKNTICLGRHLASILRLGDCLTLS 39 >gi|254781104|ref|YP_003065517.1| hypothetical protein CLIBASIA_05030 [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 21.6 bits (44), Expect = 2.9, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 35 FIVHNTVYLSITVPHTIAHQLQS 57 FI+ V SIT+ ++I H+ + Sbjct: 7 FIILGVVLASITITYSIKHETEG 29 >gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 21.2 bits (43), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%) Query: 48 PHTIAHQLQSLRSNAQQIIQN---IPT----VKNAVVTLTENKNPPQQRN 90 PH I H L+ + Q I+++ IPT V+ A T T N +++N Sbjct: 576 PHDIQHMLERVSLIQQGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKN 625 >gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 428 Score = 20.8 bits (42), Expect = 6.3, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 17/26 (65%) Query: 60 SNAQQIIQNIPTVKNAVVTLTENKNP 85 ++ + I++ +PT KN++ TL + P Sbjct: 56 TDLKNILKVLPTNKNSIATLQKKYKP 81 >gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 20.0 bits (40), Expect = 9.2, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 5 LKNQIVDSLKVLSIPGEK 22 L+ I+ +LK+L I GE+ Sbjct: 123 LEEVIIRTLKILGIVGER 140 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.129 0.343 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,815 Number of Sequences: 1233 Number of extensions: 2013 Number of successful extensions: 19 Number of sequences better than 100.0: 19 Number of HSP's better than 100.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 19 length of query: 101 length of database: 328,796 effective HSP length: 61 effective length of query: 40 effective length of database: 253,583 effective search space: 10143320 effective search space used: 10143320 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.2 bits) S2: 32 (16.9 bits)