Query gi|254780492|ref|YP_003064905.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 40
No_of_seqs 16 out of 18
Neff 1.7
Searched_HMMs 13730
Date Wed Jun 1 05:36:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780492.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jdqd1 d.361.1.1 (D:688-756) 6.9 46 0.0033 14.9 -0.0 13 3-15 56-68 (69)
2 d2cupa3 g.39.1.3 (A:8-34) Four 6.5 70 0.0051 14.0 0.7 12 28-39 2-13 (27)
3 d1fida_ d.171.1.1 (A:) Fibrino 4.3 76 0.0055 13.9 -0.3 23 11-33 221-245 (259)
4 d1re3b1 d.171.1.1 (B:200-458) 3.4 1.1E+02 0.0081 13.1 -0.1 12 10-21 232-243 (259)
5 d1a5ta2 c.37.1.20 (A:1-207) de 3.4 1.4E+02 0.01 12.6 0.5 10 15-24 2-11 (207)
6 d2vgha_ g.25.1.1 (A:) Heparin- 2.7 1.6E+02 0.012 12.4 0.2 15 20-34 40-54 (55)
7 d2gtia2 d.294.1.2 (A:217-369) 2.4 1.7E+02 0.012 12.3 -0.0 11 11-21 136-146 (153)
8 d1lwub1 d.171.1.1 (B:219-477) 2.4 1.2E+02 0.0087 13.0 -0.8 23 12-34 235-259 (259)
9 d1lwuc1 d.171.1.1 (C:138-399) 2.3 1.8E+02 0.013 12.2 -0.1 24 12-35 226-251 (262)
10 d1js8a2 b.112.1.1 (A:2792-2892 2.1 2.3E+02 0.017 11.6 0.3 4 17-20 45-48 (101)
No 1
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]}
Probab=6.94 E-value=46 Score=14.87 Aligned_cols=13 Identities=38% Similarity=0.332 Sum_probs=8.7
Q ss_pred CCCCCHHHHCCCC
Q ss_conf 3552112211311
Q gi|254780492|r 3 IDNESNQARKGIW 15 (40)
Q Consensus 3 ~~~~~~Qa~Kg~w 15 (40)
|-+.++|++|+++
T Consensus 56 i~td~~t~~kr~r 68 (69)
T d2jdqd1 56 ILTDSQTATKRIR 68 (69)
T ss_dssp -----CCCSCCCC
T ss_pred HHHHHHHHHHHHC
T ss_conf 4320577666403
No 2
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.49 E-value=70 Score=14.04 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.1
Q ss_pred HHCCCCCCCCCC
Q ss_conf 311333664347
Q gi|254780492|r 28 ICCDKLWGAANK 39 (40)
Q Consensus 28 ~~CdK~rGa~n~ 39 (40)
+-|.||-||+.+
T Consensus 2 ~ecrkpigad~k 13 (27)
T d2cupa3 2 VECRKPIGADSK 13 (27)
T ss_dssp SSSCCBCCSSSC
T ss_pred CCCCCCCCCCHH
T ss_conf 544477675637
No 3
>d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), gamma [TaxId: 9606]}
Probab=4.26 E-value=76 Score=13.88 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=14.1
Q ss_pred HCCCCCCCCC--CHHHHHHHHCCCC
Q ss_conf 1131113420--0012222311333
Q gi|254780492|r 11 RKGIWWMPWH--AQAMKDVICCDKL 33 (40)
Q Consensus 11 ~Kg~wWMPw~--~eaMKDV~~CdK~ 33 (40)
.+||.|++|+ ...+|-|..--+|
T Consensus 221 ~~GI~W~~w~g~~ysLK~~~MmIRP 245 (259)
T d1fida_ 221 DNGIIWATWKTRWYSMKKTTMKIIP 245 (259)
T ss_dssp CCBSEETTTSCTTBCCSEEEEEEEE
T ss_pred CCEEEECCCCCCCCCEEEEEEEEEE
T ss_conf 8804968778833220569999730
No 4
>d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]}
Probab=3.38 E-value=1.1e+02 Score=13.12 Aligned_cols=12 Identities=33% Similarity=1.132 Sum_probs=8.1
Q ss_pred HHCCCCCCCCCC
Q ss_conf 211311134200
Q gi|254780492|r 10 ARKGIWWMPWHA 21 (40)
Q Consensus 10 a~Kg~wWMPw~~ 21 (40)
...||+|.+|+-
T Consensus 232 ~~~GI~W~~w~g 243 (259)
T d1re3b1 232 TDDGVVWMNWKG 243 (259)
T ss_dssp SCCBSEEHHHHB
T ss_pred CCCCEEECCCCC
T ss_conf 898049677899
No 5
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=3.36 E-value=1.4e+02 Score=12.65 Aligned_cols=10 Identities=30% Similarity=1.093 Sum_probs=5.9
Q ss_pred CCCCCCCHHH
Q ss_conf 1134200012
Q gi|254780492|r 15 WWMPWHAQAM 24 (40)
Q Consensus 15 wWMPw~~eaM 24 (40)
.|-|||.++-
T Consensus 2 ~~yPw~~~~~ 11 (207)
T d1a5ta2 2 RWYPWLRPDF 11 (207)
T ss_dssp CCCGGGHHHH
T ss_pred CCCCCCHHHH
T ss_conf 9871219999
No 6
>d2vgha_ g.25.1.1 (A:) Heparin-binding domain from vascular endothelial growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73 E-value=1.6e+02 Score=12.35 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=8.4
Q ss_pred CCHHHHHHHHCCCCC
Q ss_conf 000122223113336
Q gi|254780492|r 20 HAQAMKDVICCDKLW 34 (40)
Q Consensus 20 ~~eaMKDV~~CdK~r 34 (40)
++|--.-.-.|||||
T Consensus 40 QLELNERTCrcdkpr 54 (55)
T d2vgha_ 40 QLELNERTCRCDKPR 54 (55)
T ss_dssp TCEEETTTTEEECSC
T ss_pred HHHHCCCEECCCCCC
T ss_conf 633200102257889
No 7
>d2gtia2 d.294.1.2 (A:217-369) Nsp15, C-terminal domain {Murine hepatitis virus, MHV [TaxId: 11138]}
Probab=2.44 E-value=1.7e+02 Score=12.29 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=8.2
Q ss_pred HCCCCCCCCCC
Q ss_conf 11311134200
Q gi|254780492|r 11 RKGIWWMPWHA 21 (40)
Q Consensus 11 ~Kg~wWMPw~~ 21 (40)
-|-++||-|+-
T Consensus 136 ~k~~rfMlWc~ 146 (153)
T d2gtia2 136 FKDFQFMLWCN 146 (153)
T ss_dssp TEEEEEEEETT
T ss_pred CCEEEEEEEEC
T ss_conf 60478999954
No 8
>d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]}
Probab=2.41 E-value=1.2e+02 Score=12.98 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=0.0
Q ss_pred CCCCCCCC--CCHHHHHHHHCCCCC
Q ss_conf 13111342--000122223113336
Q gi|254780492|r 12 KGIWWMPW--HAQAMKDVICCDKLW 34 (40)
Q Consensus 12 Kg~wWMPw--~~eaMKDV~~CdK~r 34 (40)
+||.|++| ....+|-|..--+|+
T Consensus 235 ~Gi~W~~w~g~~yslk~~~M~IRPk 259 (259)
T d1lwub1 235 DGVVWMNWKGSWYSMRQMAMKLRPK 259 (259)
T ss_dssp CSSEEHHHHCTTBCCSEEEEEEECC
T ss_pred CCEEECCCCCCCCCEEEEEEEEEEC
T ss_conf 9539636789642100589998019
No 9
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Probab=2.28 E-value=1.8e+02 Score=12.20 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCCCCCCC--CCHHHHHHHHCCCCCC
Q ss_conf 13111342--0001222231133366
Q gi|254780492|r 12 KGIWWMPW--HAQAMKDVICCDKLWG 35 (40)
Q Consensus 12 Kg~wWMPw--~~eaMKDV~~CdK~rG 35 (40)
.||.|.+| ....+|-|..--+|.+
T Consensus 226 ~Gi~W~~w~g~~ysLK~~~M~IRP~~ 251 (262)
T d1lwuc1 226 DGIIWATWHDRWYSLKMTTMKLLPMG 251 (262)
T ss_dssp CSSEEGGGSCTTCCCSEEEEEEEESS
T ss_pred CCCEECCCCCCCCCCEEEEEEEEECC
T ss_conf 93287877997435378999982588
No 10
>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]}
Probab=2.08 E-value=2.3e+02 Score=11.63 Aligned_cols=4 Identities=50% Similarity=1.157 Sum_probs=0.0
Q ss_pred CCCC
Q ss_conf 3420
Q gi|254780492|r 17 MPWH 20 (40)
Q Consensus 17 MPw~ 20 (40)
|||+
T Consensus 45 MpW~ 48 (101)
T d1js8a2 45 MFWA 48 (101)
T ss_dssp CCCB
T ss_pred CCCC
T ss_conf 7511
Done!