BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780492|ref|YP_003064905.1| hypothetical protein
CLIBASIA_01895 [Candidatus Liberibacter asiaticus str. psy62]
(40 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780492|ref|YP_003064905.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780830|ref|YP_003065243.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040169|gb|ACT56965.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040507|gb|ACT57303.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040557|gb|ACT57353.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 40
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/40 (100%), Positives = 40/40 (100%)
Query: 1 MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1 MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
>gi|297182451|gb|ADI18614.1| hypothetical protein [uncultured Rhodospirillales bacterium
HF4000_24M03]
Length = 60
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
+KGIWWMPW +AMKDVI C+K GAAN+H
Sbjct: 31 KKGIWWMPWRQEAMKDVIGCEKPRGAANRH 60
>gi|210623970|ref|ZP_03294136.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
13275]
gi|210153265|gb|EEA84271.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
13275]
Length = 49
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 7 SNQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
+ Q KG MPWH + MKDVI CDKLWG A K
Sbjct: 16 TGQVIKGAGRMPWHREPMKDVISCDKLWGVARK 48
>gi|51557703|gb|AAU06491.1| putative salivary protein [Culicoides sonorensis]
Length = 46
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 8 NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
Q +K I WMPW ++AMKDV+ CDKL G +
Sbjct: 1 GQVKKRIRWMPWQSEAMKDVVACDKLRGVGKQ 32
>gi|297184727|gb|ADI20838.1| hypothetical protein [uncultured alpha proteobacterium
EF100_102A06]
Length = 83
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 6 ESNQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
E + +KGIWWMPW +AMKDV C+K GAA+K
Sbjct: 49 ELIKRQKGIWWMPWCQEAMKDVTRCEKPGGAASK 82
>gi|297180501|gb|ADI16715.1| hypothetical protein [uncultured gamma proteobacterium
HF0010_05D02]
Length = 77
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 12 KGIWWMPWHAQAMKDVICCDKLWGAANK 39
K I WMPW ++AMKDV+ CDKL G +
Sbjct: 3 KRIRWMPWQSEAMKDVVACDKLRGVGKQ 30
>gi|297182112|gb|ADI18285.1| hypothetical protein [uncultured Chromatiales bacterium
HF0200_41F04]
Length = 56
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 8 NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
QA K +WWMP +AMKDV+ C+K GA NK
Sbjct: 24 GQANKRMWWMPRRQEAMKDVVVCEKPRGAGNK 55
>gi|297183883|gb|ADI20005.1| hypothetical protein [uncultured gamma proteobacterium
EB000_65A11]
Length = 57
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 8 NQARKGIWWMPWHAQAMKDVICCDKLWGA 36
QA K IWWMP +AMKDV+ C+KL G
Sbjct: 6 GQANKRIWWMPRQLEAMKDVVVCEKLGGG 34
>gi|297182912|gb|ADI19062.1| hypothetical protein [uncultured delta proteobacterium
HF0070_07E19]
Length = 69
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 3 IDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAAN 38
I+ +SN+ KG MPW +AMKDV CDK G AN
Sbjct: 34 IEKKSNE--KGTGRMPWLQEAMKDVASCDKPRGEAN 67
>gi|255325736|ref|ZP_05366831.1| putative salivary protein [Corynebacterium tuberculostearicum
SK141]
gi|255297202|gb|EET76524.1| putative salivary protein [Corynebacterium tuberculostearicum
SK141]
Length = 58
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 12 KGIWWMPWHAQAMKDVICCDKLWGAAN 38
KG WWMPWHA+ MKDV C K G N
Sbjct: 32 KGAWWMPWHAEPMKDVKGCVKPRGVVN 58
>gi|297182737|gb|ADI18892.1| hypothetical protein [uncultured delta proteobacterium
HF0010_08B07]
Length = 68
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 17 MPWHAQAMKDVICCDKLWGAANK 39
MPWH +AMKDV CDKL GA +
Sbjct: 1 MPWHLEAMKDVGNCDKLRGAVTQ 23
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780492|ref|YP_003064905.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780830|ref|YP_003065243.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040169|gb|ACT56965.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040507|gb|ACT57303.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040557|gb|ACT57353.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 40
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/40 (100%), Positives = 40/40 (100%)
Query: 1 MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1 MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
>gi|210623970|ref|ZP_03294136.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
13275]
gi|210153265|gb|EEA84271.1| hypothetical protein CLOHIR_02088 [Clostridium hiranonis DSM
13275]
Length = 49
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 7 SNQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
+ Q KG MPWH + MKDVI CDKLWG A K
Sbjct: 16 TGQVIKGAGRMPWHREPMKDVISCDKLWGVARK 48
>gi|297182451|gb|ADI18614.1| hypothetical protein [uncultured Rhodospirillales bacterium
HF4000_24M03]
Length = 60
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
+KGIWWMPW +AMKDVI C+K GAAN+H
Sbjct: 31 KKGIWWMPWRQEAMKDVIGCEKPRGAANRH 60
>gi|297184727|gb|ADI20838.1| hypothetical protein [uncultured alpha proteobacterium
EF100_102A06]
Length = 83
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAANK 39
+KGIWWMPW +AMKDV C+K GAA+K
Sbjct: 54 QKGIWWMPWCQEAMKDVTRCEKPGGAASK 82
>gi|255325736|ref|ZP_05366831.1| putative salivary protein [Corynebacterium tuberculostearicum
SK141]
gi|255297202|gb|EET76524.1| putative salivary protein [Corynebacterium tuberculostearicum
SK141]
Length = 58
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 11 RKGIWWMPWHAQAMKDVICCDKLWGAAN 38
KG WWMPWHA+ MKDV C K G N
Sbjct: 31 IKGAWWMPWHAEPMKDVKGCVKPRGVVN 58
>gi|297182112|gb|ADI18285.1| hypothetical protein [uncultured Chromatiales bacterium
HF0200_41F04]
Length = 56
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 8 NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
QA K +WWMP +AMKDV+ C+K GA NK
Sbjct: 24 GQANKRMWWMPRRQEAMKDVVVCEKPRGAGNK 55
>gi|51557703|gb|AAU06491.1| putative salivary protein [Culicoides sonorensis]
Length = 46
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 8 NQARKGIWWMPWHAQAMKDVICCDKLWGAANK 39
Q +K I WMPW ++AMKDV+ CDKL G +
Sbjct: 1 GQVKKRIRWMPWQSEAMKDVVACDKLRGVGKQ 32
>gi|297182912|gb|ADI19062.1| hypothetical protein [uncultured delta proteobacterium
HF0070_07E19]
Length = 69
Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 6 ESNQARKGIWWMPWHAQAMKDVICCDKLWGAAN 38
E KG MPW +AMKDV CDK G AN
Sbjct: 35 EKKSNEKGTGRMPWLQEAMKDVASCDKPRGEAN 67
>gi|297180501|gb|ADI16715.1| hypothetical protein [uncultured gamma proteobacterium
HF0010_05D02]
Length = 77
Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 12 KGIWWMPWHAQAMKDVICCDKLWGAANK 39
K I WMPW ++AMKDV+ CDKL G +
Sbjct: 3 KRIRWMPWQSEAMKDVVACDKLRGVGKQ 30
>gi|269968958|ref|ZP_06182898.1| hypothetical protein VMC_43280 [Vibrio alginolyticus 40B]
gi|269826431|gb|EEZ80825.1| hypothetical protein VMC_43280 [Vibrio alginolyticus 40B]
Length = 71
Score = 37.7 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 17 MPWHAQAMKDVICCDKLWGAANKH 40
MPW ++AMKDV+ CDK + H
Sbjct: 1 MPWQSEAMKDVLTCDKPRLGSKNH 24
>gi|297183883|gb|ADI20005.1| hypothetical protein [uncultured gamma proteobacterium
EB000_65A11]
Length = 57
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 8 NQARKGIWWMPWHAQAMKDVICCDKLWG 35
QA K IWWMP +AMKDV+ C+KL G
Sbjct: 6 GQANKRIWWMPRQLEAMKDVVVCEKLGG 33
>gi|297182737|gb|ADI18892.1| hypothetical protein [uncultured delta proteobacterium
HF0010_08B07]
Length = 68
Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 17 MPWHAQAMKDVICCDKLWGAANK 39
MPWH +AMKDV CDKL GA +
Sbjct: 1 MPWHLEAMKDVGNCDKLRGAVTQ 23
>gi|297180674|gb|ADI16883.1| hypothetical protein [uncultured gamma proteobacterium
HF0010_16J05]
Length = 71
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 17 MPWHAQAMKDVICCDKLWGAANK 39
MPW +AMKDV+ CD G +
Sbjct: 1 MPWQLKAMKDVVACDMPRGVGKQ 23
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.316 0.133 0.459
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 751,410,531
Number of Sequences: 14124377
Number of extensions: 14854867
Number of successful extensions: 32541
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32516
Number of HSP's gapped (non-prelim): 25
length of query: 40
length of database: 4,842,793,630
effective HSP length: 14
effective length of query: 26
effective length of database: 4,645,052,352
effective search space: 120771361152
effective search space used: 120771361152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)