BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780492|ref|YP_003064905.1| hypothetical protein
CLIBASIA_01895 [Candidatus Liberibacter asiaticus str. psy62]
         (40 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780880|ref|YP_003065293.1| hypothetical protein CLIBASIA_03885 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 40

 Score = 85.9 bits (211), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40


>gi|254780830|ref|YP_003065243.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 40

 Score = 85.9 bits (211), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40


>gi|254780492|ref|YP_003064905.1| hypothetical protein CLIBASIA_01895 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 40

 Score = 85.9 bits (211), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40
          MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH
Sbjct: 1  MTIDNESNQARKGIWWMPWHAQAMKDVICCDKLWGAANKH 40


>gi|254780669|ref|YP_003065082.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 301

 Score = 22.7 bits (47), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 9/31 (29%)

Query: 11  RKGIWWMPW---------HAQAMKDVICCDK 32
           +KG +  PW         HA   KDV+ C++
Sbjct: 164 KKGQFLSPWEMHNILQKLHAHGAKDVLFCER 194


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.130    0.500 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,315
Number of Sequences: 1233
Number of extensions: 476
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 40
length of database: 328,796
effective HSP length: 14
effective length of query: 26
effective length of database: 311,534
effective search space:  8099884
effective search space used:  8099884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.1 bits)
S2: 31 (16.5 bits)