HHsearch alignment for GI: 254780493 and conserved domain: TIGR01648
>TIGR01648 hnRNP-R-Q hnRNP-R, Q splicing factor family; InterPro: IPR006535 Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R , Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein) . These proteins contain three RNA recognition domains and a somewhat variable C-terminal domain. .
Probab=98.22 E-value=1.3e-08 Score=74.72 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999988679788742324455088625762000481000000000001233125444432378887655
Q gi|254780493|r 177 ISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWI 256 (323)
Q Consensus 177 i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~~R~wl 256 (323)
T Consensus 139 ~SVdNcRLFvGgIPK~KkreeILeE~~K--VTEGvvdVIvY~saaDK~KNRGFaFvEYEsHraAA~ARRkLmpGri~lWG 216 (611)
T TIGR01648 139 ISVDNCRLFVGGIPKTKKREEILEEISK--VTEGVVDVIVYASAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 216 (611)
T ss_pred EEEECCEEEECCCCCCCCHHHHHHHHHH--HCCCEEEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 7870571144674888851226767533--01332566870783656667631475102058999998630897188703
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHH-----HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 311223679999989899999999999-----9999860886647886789999999999999998520379
Q gi|254780493|r 257 LTRCNPYRDNIPDIPENIILRTSQTYI-----AAYEKITGLKFIADNSELPPLERIRNNLRKYTHRHLSSRN 323 (323)
Q Consensus 257 ~~~~~~~~~~~P~LP~~vv~~~~~~Y~-----~~~e~lTG~~f~~~~~~~~~~erI~~~l~~~~~~~~~~~~ 323 (323)
T Consensus 217 h~iaVdWAeP~~evDedvM~~VKiLyVRNL~~~ttEE~ieKsF~~f~PG--~vERVKK-irDYAFVHF~~Re 285 (611)
T TIGR01648 217 HVIAVDWAEPEVEVDEDVMAKVKILYVRNLMLETTEEIIEKSFSEFKPG--AVERVKK-IRDYAFVHFEDRE 285 (611)
T ss_pred CEEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCC--CEEEEEE-ECCEEEEEECCHH
T ss_conf 5178612588315872201610278883321342143332012567997--2454311-0121364016867