Query gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 323 No_of_seqs 170 out of 1571 Neff 6.2 Searched_HMMs 13730 Date Wed Jun 1 10:04:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780493.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2cnqa1 d.143.1.1 (A:2-305) SA 100.0 0 0 627.9 21.6 279 3-295 1-304 (304) 2 d1kuta_ d.143.1.1 (A:) SAICAR 100.0 0 0 463.4 17.6 217 20-290 1-219 (224) 3 d2bcgg2 c.3.1.3 (G:400-446) Gu 50.6 6.6 0.00048 16.4 3.5 23 276-298 23-45 (47) 4 d2hqsa2 c.51.2.1 (A:29-162) To 21.7 17 0.0012 13.8 1.4 11 283-293 123-133 (134) 5 d2o3ba1 d.4.1.2 (A:35-274) Nuc 20.3 21 0.0015 13.2 2.4 26 283-309 211-236 (240) 6 d1pmia_ b.82.1.3 (A:) Phosphom 20.3 14 0.001 14.3 0.8 17 89-105 3-19 (440) 7 d1g8ta_ d.4.1.2 (A:) Sm endonu 13.5 31 0.0022 12.2 1.9 26 283-309 203-228 (241) 8 d1urha1 c.46.1.2 (A:2-148) 3-m 11.4 35 0.0026 11.8 1.8 57 207-269 81-137 (147) 9 d1okga1 c.46.1.2 (A:7-162) 3-m 11.1 32 0.0023 12.0 0.6 45 207-257 85-130 (156) 10 d1nkta1 a.162.1.1 (A:226-349) 11.0 36 0.0027 11.7 1.3 12 210-222 85-96 (124) No 1 >d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=100.00 E-value=0 Score=627.91 Aligned_cols=279 Identities=34% Similarity=0.632 Sum_probs=258.9 Q ss_pred CCCCCCCCC-CCEEEECCEEEEEECCCCCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCEECCC- Q ss_conf 300054889-960230440265875999489998188125557657-77878899999999999985410233121357- Q gi|254780493|r 3 ILSKAYIPE-LPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDICSNHTLDYP- 79 (323) Q Consensus 3 ~l~~~~~~~-l~liy~GKvk~vY~~~d~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~i~tH~i~~~- 79 (323) ++++|+|++ ||++|+||||+||+++++.+||+|||||||||++++ .|||||++||+||+|||++|+++|+||||+.+ T Consensus 1 ~~~~~~~~~~l~ll~~GKvK~vY~~d~~~ll~~~tDriSAfD~~~~~~Ip~KG~~l~~is~~~F~~l~~gi~tH~i~~~~ 80 (304) T d2cnqa1 1 SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIAP 80 (304) T ss_dssp CCCSCCCTTSSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBCCCCT T ss_pred CCEEECCCCCCCCEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCC T ss_conf 94351267877510005662689708997999997984034642678899768999999999999865547765223688 Q ss_pred ---------------------CCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf ---------------------76300000025465057885212244322001221024765134466321222356887 Q gi|254780493|r 80 ---------------------DPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPY 138 (323) Q Consensus 80 ---------------------~~~~~~v~k~~~iPiE~VvR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~ 138 (323) ++++|+|++|+|||||||||||+|||+|++|. +.+++||+++|+|+.++++||+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~vkk~~~iPiE~VvR~y~tGS~~~~y~-----~~~~~~g~~lp~gl~~~~~l~~ 155 (304) T d2cnqa1 81 GKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSAWKEYV-----KTGTVHGLKQPQGLKESQEFPE 155 (304) T ss_dssp TCCGGGGSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHHHHHHHH-----HHSEETTEECCTTCCTTCEEEE T ss_pred CHHHHHCCCCCCCCCCHHHCCCCCEEEEEEEEEEEEEEEEECCEECCCEEECC-----CCCEECCCCCCCCCCCCCCCCC T ss_conf 31110013222246202321488305887513300699996345013222113-----4760216668877532334774 Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCC-CEEEE Q ss_conf 40223210333345777555545666530499899989999999999999999886797887423244550886-25762 Q gi|254780493|r 139 PVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQ-NIILA 217 (323) Q Consensus 139 Pi~tpstK~~~~~~~~D~~i~~~~~~~~~~~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g-~iiL~ 217 (323) |+|||+||++.| .||++++..++ .++++.+++++|++.++++|+.++++++++||+|||||||||++.+| +|+|+ T Consensus 156 pi~tpstK~e~g--d~d~~~~~~~~--~~i~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~~~eiili 231 (304) T d2cnqa1 156 PIFTPSTKAEQG--EHDENISPAQA--AELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILV 231 (304) T ss_dssp EEECCBCCCC-----CCCBCCHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEEE T ss_pred CCCCCHHHHHCC--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCEEEE T ss_conf 102320000000--02455657899--99861899999999999999999999974792788757999860455522787 Q ss_pred CCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 000481000000000001233125444432378887655311223679999989899999999999999986088664 Q gi|254780493|r 218 DEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFI 295 (323) Q Consensus 218 DEv~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~~R~wl~~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lTG~~f~ 295 (323) ||++||||||||++++|+. |..+++||||++|+|+.+++|++.++ |+||+||++.++++|+++||||||++|. T Consensus 232 DEv~TPDs~R~W~~~~y~~----g~~~~~lDKq~~Rd~l~~~~~~~~~~-p~lP~ei~~~~~~~Y~~~~~~ltG~~f~ 304 (304) T d2cnqa1 232 DEVLTPDSSRFWNGASYKV----GESQDSYDKQFLRDWLTANKLNGVNG-VKMPQDIVDRTRAKYIEAYETLTGSKWS 304 (304) T ss_dssp SCCSCTTTEEEEETTTCCT----TSCCCCSSTHHHHHHHHHTTCTTCTT-CCCCHHHHHHHHHHHHHHHHHHHSSCCC T ss_pred EEECCCCCCCEECCCCCCC----CCCCCCCCHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 6633798532330543357----88764523699998998658678988-8999999999999999999998688898 No 2 >d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=463.38 Aligned_cols=217 Identities=26% Similarity=0.304 Sum_probs=196.3 Q ss_pred EEEEEECCCCCEEEEEECCEEEECCCCC-CCCCHHHHHHHHHHHHHHHHHHH-CCCCEECCCCCCCCEEEECCCCCCEEE Q ss_conf 0265875999489998188125557657-77878899999999999985410-233121357763000000254650578 Q gi|254780493|r 20 VRENYFLSDGTRITIATDRLSAFDQNIA-CIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDPNVLVGQQLQMFPIELI 97 (323) Q Consensus 20 vk~vY~~~d~~ll~v~tDriSAfD~~~~-~Ip~KG~~l~~iS~~~F~~l~~~-i~tH~i~~~~~~~~~v~k~~~iPiE~V 97 (323) +|.+|..+| .+||+|||||||||++++ .|||||++||+||+|||++|++. |||||++.++|++|+|++|+||||||| T Consensus 1 tki~~~~~d-~ll~~f~DriSAfD~~~~~~IpgKG~~l~~is~~~F~~L~~~gI~tH~i~~~~~~~~~vkk~~~iPiE~V 79 (224) T d1kuta_ 1 TKIVKVTGD-YALLEFKDDITAGDGLKHDVLTGKGSICAETTAILMKYLSEKGIKTHLVEYIPPRTLKVIPLKMFPLEVV 79 (224) T ss_dssp CEEEEEETT-EEEEEECCC-----------CCSHHHHHHHHHHHHHHHHHHTTCCBSEEEEETTTEEEECCCEECSEEEE T ss_pred CEEEEECCC-EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHCCCCCEEEE T ss_conf 908993799-8999997886353761678899820999999999999741178433200356721233201266776999 Q ss_pred EECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHH Q ss_conf 85212244322001221024765134466321222356887402232103333457775555456665304998999899 Q gi|254780493|r 98 VRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETI 177 (323) Q Consensus 98 vR~y~~GS~~~~~~~~~k~~~~~~~g~~lp~gl~~~~~l~~Pi~tpstK~~~~~~~~D~~i~~~~~~~~~~~~~~~~~~i 177 (323) ||||++||+|++|. ..++.+|++|++++++|+++ .|||+|+.+++.+.+++++++++.+ T Consensus 80 vR~y~~GS~~~~y~------------------~~~g~~~~~pl~e~~~k~~~---~~D~~i~~~~~~~~~~~~~~~~~~i 138 (224) T d1kuta_ 80 VRLKKAGSFVRRYG------------------GAEGEDLPVPLVEFFIKDDE---RHDPMVCVDHLEILGIATKKQAEKM 138 (224) T ss_dssp EEEECCHHHHHHHC------------------CCTTCEEEEEEEEEEECCGG---GTCCBCCHHHHHHTTSCCHHHHHHH T ss_pred EEEEEHHHHHHHCC------------------CCCCCCCCCCCCCCHHCCCC---CCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 96437177675426------------------65565477544320002444---6763215777767622778888999 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 99999999999999886797887423244550886257620004810000000000012331254444323788876553 Q gi|254780493|r 178 SSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWIL 257 (323) Q Consensus 178 ~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~~R~wl~ 257 (323) +++++++|..++++|+++||+|||||||||++.+|+|+|+||| ||||||||+.. +++|||++|+|+. T Consensus 139 ~~~al~i~~~l~~~~~~~gliLvD~K~EFG~~~~g~ivL~DEI-tpDs~R~w~~~------------~~~DK~~~R~~l~ 205 (224) T d1kuta_ 139 KEAAVKITLALKEFFERANFELWDIKYEFGLDKDGNVVLGDEI-SPDTFRLRKKG------------EIFDKDVYRRDLG 205 (224) T ss_dssp HHHHHHHHHHHHHHHHTTTEEEEEEEECEEECTTCCEEECSCC-STTTEEEEETT------------CCCCHHHHHHGGG T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCEEEEECC-CCCCCCCCCCC------------CCCCHHHHHHCCC T ss_conf 9999999999999986346242321158726699929999803-89754617898------------7448788871022 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 112236799999898999999999999999860 Q gi|254780493|r 258 TRCNPYRDNIPDIPENIILRTSQTYIAAYEKIT 290 (323) Q Consensus 258 ~~~~~~~~~~P~LP~~vv~~~~~~Y~~~~e~lT 290 (323) ++.+.|.++++++- T Consensus 206 -------------------~~~~~Y~ev~~~~~ 219 (224) T d1kuta_ 206 -------------------DPLKKYREVLELCR 219 (224) T ss_dssp -------------------CTTHHHHHHHHHHH T ss_pred -------------------CHHHHHHHHHHHHH T ss_conf -------------------04389999999998 No 3 >d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=50.64 E-value=6.6 Score=16.44 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99999999999986088664788 Q gi|254780493|r 276 LRTSQTYIAAYEKITGLKFIADN 298 (323) Q Consensus 276 ~~~~~~Y~~~~e~lTG~~f~~~~ 298 (323) +.+..--..+|+|+||+++.... T Consensus 23 Ett~~Dv~diY~ritG~~ldl~k 45 (47) T d2bcgg2 23 ESMTDDVKDIYFRVTGHPLVLKQ 45 (47) T ss_dssp HHHHHHHHHHHHHHHSSCCCCCC T ss_pred HHHHHHHHHHHHHHHCCCCCEEC T ss_conf 77789999999984388143231 No 4 >d2hqsa2 c.51.2.1 (A:29-162) TolB, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=21.73 E-value=17 Score=13.82 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=8.6 Q ss_pred HHHHHHHHCCC Q ss_conf 99999860886 Q gi|254780493|r 283 IAAYEKITGLK 293 (323) Q Consensus 283 ~~~~e~lTG~~ 293 (323) -.+||+|||.+ T Consensus 123 D~Iye~lTG~~ 133 (134) T d2hqsa2 123 DEVFEKLTGIK 133 (134) T ss_dssp HHHHHHHHSSC T ss_pred HHHHHHHCCCC T ss_conf 99999970999 No 5 >d2o3ba1 d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PCC 7120 [TaxId: 1167]} Probab=20.35 E-value=21 Score=13.23 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=18.7 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 999998608866478867899999999 Q gi|254780493|r 283 IAAYEKITGLKFIADNSELPPLERIRN 309 (323) Q Consensus 283 ~~~~e~lTG~~f~~~~~~~~~~erI~~ 309 (323) +.-.|++||..|++..+. ++.++|.+ T Consensus 211 i~~IE~~TGl~Ff~~L~~-~~e~~~ea 236 (240) T d2o3ba1 211 VDELESLTGYDFLSNVSP-NIQTSIES 236 (240) T ss_dssp HHHHHHHHCCCTTTTSCH-HHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCH-HHHHHHHH T ss_conf 999999879776667998-99999975 No 6 >d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]} Probab=20.28 E-value=14 Score=14.27 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=12.7 Q ss_pred CCCCCCEEEEECCCCCC Q ss_conf 25465057885212244 Q gi|254780493|r 89 LQMFPIELIVRGYLAGN 105 (323) Q Consensus 89 ~~~iPiE~VvR~y~~GS 105 (323) .+|++|.|.+++|++|. T Consensus 3 ~~~~~l~~~~q~Y~WG~ 19 (440) T d1pmia_ 3 EKLFRIQCGYQNYDWGK 19 (440) T ss_dssp SSEEEEEECEECCTTBE T ss_pred CCEEECCCCCCCCCCCC T ss_conf 75686317861687888 No 7 >d1g8ta_ d.4.1.2 (A:) Sm endonuclease {Serratia marcescens [TaxId: 615]} Probab=13.47 E-value=31 Score=12.16 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.0 Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 999998608866478867899999999 Q gi|254780493|r 283 IAAYEKITGLKFIADNSELPPLERIRN 309 (323) Q Consensus 283 ~~~~e~lTG~~f~~~~~~~~~~erI~~ 309 (323) +.-.|++||-.|++..+. ++.++|.+ T Consensus 203 v~~IE~~TGl~Ff~~L~~-~~~~~le~ 228 (241) T d1g8ta_ 203 VDEIEKRTGLIIWAGLPD-DVQASLKS 228 (241) T ss_dssp HHHHHHHHSCBSSTTSCH-HHHHHHHT T ss_pred HHHHHHHHCCCCCCCCCH-HHHHHHHC T ss_conf 999999879785657998-89999861 No 8 >d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Probab=11.44 E-value=35 Score=11.77 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=36.3 Q ss_pred EECCCCCEEEECCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC Q ss_conf 550886257620004810000000000012331254444323788876553112236799999 Q gi|254780493|r 207 GIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPD 269 (323) Q Consensus 207 G~~~~g~iiL~DEv~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~~R~wl~~~~~~~~~~~P~ 269 (323) |++.+..+|+.|.-...-++|.|-.=.| .|....++--.-+..|..+ +.+-...+|+ T Consensus 81 Gi~~~~~vVvY~~~~~~~A~r~~~~L~~-----~G~~~V~vLdGG~~~W~~~-g~pv~~~~~~ 137 (147) T d1urha1 81 GVNQDKHLIVYDEGNLFSAPRAWWMLRT-----FGVEKVSILGGGLAGWQRD-DLLLEEGAVE 137 (147) T ss_dssp TCCTTSEEEEECSSSCSSHHHHHHHHHH-----TTCSCEEEETTHHHHHHHT-TCCCBBSCCC T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHH-----HCCCCEEEECCHHHHHHHC-CCCCCCCCCC T ss_conf 7678986999838986232157889886-----3166268968819999986-9975379877 No 9 >d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Probab=11.10 E-value=32 Score=12.03 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=25.0 Q ss_pred EECCCCCEEEECCC-CCCCCCHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 55088625762000-4810000000000012331254444323788876553 Q gi|254780493|r 207 GIDKKQNIILADEI-HTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWIL 257 (323) Q Consensus 207 G~~~~g~iiL~DEv-~TPDssR~W~~~~ye~~~~~g~~~~s~DKq~~R~wl~ 257 (323) |++.+..+|+.|.- +..-++|.|-.=.| .|.. .++--.-+..|.. T Consensus 85 GI~~~~~VVvYd~~~g~~~A~R~~w~L~~-----~G~~-v~iLdGG~~aW~~ 130 (156) T d1okga1 85 GMAGELPVLCYDDECGAMGGCRLWWMLNS-----LGAD-AYVINGGFQACKA 130 (156) T ss_dssp TCSSSSCEEEECSSTTTTTHHHHHHHHHH-----HTCC-EEEETTTTHHHHT T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH-----CCCE-EEEECCCHHHHHH T ss_conf 24677249998078883087899999998-----3984-6996798999998 No 10 >d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]} Probab=11.03 E-value=36 Score=11.68 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=0.0 Q ss_pred CCCCEEEECCCCC Q ss_conf 8862576200048 Q gi|254780493|r 210 KKQNIILADEIHT 222 (323) Q Consensus 210 ~~g~iiL~DEv~T 222 (323) .+|+++++||. | T Consensus 85 ~d~~v~ivDe~-T 96 (124) T d1nkta1 85 RDGEVLIVDEF-T 96 (124) T ss_dssp CSSCEEEBCSS-S T ss_pred ECCEEEEEECC-C T ss_conf 44869997345-8 Done!