RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780493|ref|YP_003064906.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
(323 letters)
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic,
bacterial, and archaeal group of SAICAR synthetases
represented by the Saccharomyces cerevisiae (Sc) enzyme,
mostly absent in metazoans. SAICAR synthetase catalyzes
the seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 279
Score = 338 bits (870), Expect = 9e-94
Identities = 117/292 (40%), Positives = 164/292 (56%), Gaps = 29/292 (9%)
Query: 15 YYSGKVRENYFLSDGTRITIATDRLSAFDQNIAC-IPYKGEVLNQITQYWFHHTSDICSN 73
YSGKVR+ Y L DG + +ATDR+SAFD + IP KGEVL QI+ +WF T DI N
Sbjct: 2 IYSGKVRDVYDLGDGRLLFVATDRISAFDVILPPDIPGKGEVLTQISAFWFELTEDIIPN 61
Query: 74 HTL-------------DYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRK 120
H + + PD +V ++ + PIE IVRGYL G+ Y+ G
Sbjct: 62 HLISTDVEDLPEIKEPEDPDGRSMVVKKAKPIPIECIVRGYLTGSGWKE----YQKGGT- 116
Query: 121 IYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSY 180
+ LP+ + + QKLP P+ TP+TK+ E G D+ IS E + I+ + +
Sbjct: 117 VCGIKLPEGLREAQKLPEPIFTPSTKAEE---GHDENISFEEAVE--IIGAELADELREL 171
Query: 181 ALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFRE 240
AL+L+ER + A + GLIL D+K+EFG+D+ IIL DE+ TPDSSR+W ++YE
Sbjct: 172 ALALYERAAEYAAKRGLILADTKFEFGLDENGEIILIDEVLTPDSSRFWPADSYE----P 227
Query: 241 GITPIGLDKDFIRNWILTRCNPYRD-NIPDIPENIILRTSQTYIAAYEKITG 291
G DK F+R+W+ +D P +P +I +TS YI AYE+ITG
Sbjct: 228 GKEQPSFDKQFVRDWLEASGWDKQDPPPPPLPAEVIEKTSARYIEAYERITG 279
>gnl|CDD|30501 COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide
(SAICAR) synthase [Nucleotide transport and metabolism].
Length = 247
Score = 216 bits (553), Expect = 4e-57
Identities = 95/286 (33%), Positives = 137/286 (47%), Gaps = 42/286 (14%)
Query: 9 IPELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQNIAC-IPYKGEVLNQITQYWFHH 66
+ +L Y GK ++ Y D I +DR SAFD IP KG + NQI+ + F
Sbjct: 1 MEKLRLLYEGKAKDLYETDDPDLLIMEFSDRASAFDGEKKDQIPGKGALNNQISAFIFEK 60
Query: 67 TSD-ICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYL 125
+ H ++ + ++L++ P+E++VR Y AG SLL Y + +
Sbjct: 61 LEEAGIPTHFIELLSDREQLVKKLEIIPLEVVVRNYAAG----SLLKRYGIEEGTVLGIP 116
Query: 126 LPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLF 185
L + + N +LP P++T D+ IS GI T + E I AL +
Sbjct: 117 LVEFLYKNDELPDPIVT------------DEHIS-----ALGIATPEEIEEIKELALKIN 159
Query: 186 ERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPI 245
E L + G+ILVD K EFG+D+ I+LADEI PDS R W+ ETYEKS
Sbjct: 160 EVLKDLFAKRGIILVDFKLEFGLDEDGEIVLADEIS-PDSCRLWDAETYEKSL------- 211
Query: 246 GLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITG 291
DKDF R ++P++ E ++ R S Y AYE+ITG
Sbjct: 212 --DKDFFRRD--------LGDLPELYEEVLERLSDLYEEAYERITG 247
>gnl|CDD|110273 pfam01259, SAICAR_synt, SAICAR synthetase. Also known as
Phosphoribosylaminoimidazole-succinocarboxamide
synthase.
Length = 243
Score = 182 bits (464), Expect = 1e-46
Identities = 91/266 (34%), Positives = 144/266 (54%), Gaps = 27/266 (10%)
Query: 12 LPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHHTSD 69
LP GKV++ Y D T + +A DR+SAFD IP KG +LN+ + +WF +
Sbjct: 2 LPLLARGKVKDIYETDDENTLLMVAKDRISAFDGIRKNQIPGKGRILNKTSSFWFEFLQE 61
Query: 70 IC-SNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPD 128
NH ++ L+ ++L+M PIE++VRGY G S L Y G + + LP
Sbjct: 62 AGIPNHFVESLSETELLVKKLKMIPIEVVVRGYATG----SFLKRYT-GVVEGIK--LPP 114
Query: 129 NMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERG 188
+ ++ P + P+TK+ D+ IS + ++ + + + + L+L+E+
Sbjct: 115 GLVESFYKPDAIFDPSTKAEH-----DENISFAQAEL--LVGKEEADRMKEKTLALYEKL 167
Query: 189 CKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLD 248
K A + G+ILVD+K+EFG+DK I+LADEI PDSSR W+ +TYEK + D
Sbjct: 168 KKYAADKGIILVDTKFEFGLDKDGEILLADEIS-PDSSRLWDADTYEKQY---------D 217
Query: 249 KDFIRNWILTRCNPYRDNIPDIPENI 274
K F+R+W+ + Y + P +PE+I
Sbjct: 218 KQFLRDWLGSNGEAYEEVGPKLPEDI 243
>gnl|CDD|133468 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. SAICAR synthetase
(the PurC gene product) catalyzes the seventh step of
the de novo biosynthesis of purine nucleotides (also
reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 121 bits (306), Expect = 2e-28
Identities = 59/244 (24%), Positives = 98/244 (40%), Gaps = 26/244 (10%)
Query: 16 YSGKVRENYFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSDI-CSN 73
Y GK + Y DG + D +SA D + KG++ ++T + F + S+
Sbjct: 3 YRGKTKIVYETKDGVLLLEFKDDISAGDGARRNFLDEKGDITAKLTLFIFKYLSEAGIPT 62
Query: 74 HTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDN 133
H ++ P L+ +L+ P+E++VR G S + Y K +
Sbjct: 63 HFVERLGPRTLLVDKLKXIPLEVVVRNRATG----SFVKRYGGFK-------------EG 105
Query: 134 QKLPYPVITPTTKSSESASGCDQP-ISPNEIIHRGILTRNQWETISSYALSLFERGCKLA 192
++ P P++ K P +S +++ G + + E A+ + KL
Sbjct: 106 REFPPPLVEFFYKDDAE----HDPIVSEDQLERLGFIGKVDVERXKELAVKINTVLKKLF 161
Query: 193 LENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFI 252
GL L D K EFG+D++ I+L DEI +PDSSR W L I
Sbjct: 162 SPAGLELWDFKLEFGLDEEGEIVLGDEI-SPDSSRLWRKGGEPYDKDLFRRRASLG-QII 219
Query: 253 RNWI 256
+
Sbjct: 220 EKYE 223
>gnl|CDD|38046 KOG2835, KOG2835, KOG2835,
Phosphoribosylamidoimidazole-succinocarboxamide synthase
[Nucleotide transport and metabolism].
Length = 373
Score = 100 bits (251), Expect = 4e-22
Identities = 79/373 (21%), Positives = 132/373 (35%), Gaps = 62/373 (16%)
Query: 1 MRILSKAYIPELPNYYSGKVRENYFLSD--GTRITIATDRLSAFDQNIA-CIPYKGEVLN 57
M + +++ P GKVR+ Y L D G +TI+ DR++A D +A I K +LN
Sbjct: 1 MSLTTESLDPLGKELAEGKVRDVYELVDSPGLVLTISKDRITALDAAMANSIQGKAAILN 60
Query: 58 QITQYWF---------HHTSDIC-------------SNHTLDYPDPNVLVGQQLQMFPIE 95
+IT + F ++ C + ++ P
Sbjct: 61 KITSFVFELLGEAGIETAFTEQCGETAFEARPCPMTPIEWVTRRCATSSFEKKNPGVPEG 120
Query: 96 LIVRGYLAGNTKTSLLTFY-KNGKRKIYEY----LLPDNMSDNQKLPYPVITPTTKSSES 150
RGY +T G +I + + D + QKLP I + K++
Sbjct: 121 YRFRGYKTESTFKDDANMDNVWGDEQIIDCAGLLIGRDEVKIMQKLPLY-IFESLKAAW- 178
Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210
+G + IS +I +T E + + + + +G I+ D K F +D+
Sbjct: 179 -AGHNCAISDMKIEFGVDVT--LGEIVLASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDE 235
Query: 211 KQN--IILADEIHTPDSSRYWEVETYEK-------SFREGITPIGLDKDFIRNWILTRCN 261
N +IL DE TP SRY +++ G P+ +D +F R +
Sbjct: 236 VTNEGLILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERPGVPVVFV 295
Query: 262 PY--RDNIPDI----------------PENIILRTSQTYIAAYEKITGLKFIADNSELPP 303
RDN+ I PEN L ++ + E ITG ++
Sbjct: 296 AVDGRDNLLSIVQMPNGVPVATVAVNNPENAALLAARILGLSNEMITGKMRSYQLNQQII 355
Query: 304 LERIRNNLRKYTH 316
+ L
Sbjct: 356 ILNKDRKLETVGW 368
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. A subfamily of SAICAR
synthetases represented by the Thermotoga maritima (Tm)
enzyme and E. coli PurC. SAICAR synthetase catalyzes the
seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 98.7 bits (247), Expect = 2e-21
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 37 DRLSAFD-QNIACIPYKGEVLNQITQYWFHHTSDI-CSNHTLDYPDPNVLVGQQLQMFPI 94
D +AF+ + I KG + N+I+ F + + H ++ + +++++ P+
Sbjct: 25 DDATAFNGKKKDTIEGKGVLNNEISALIFKYLEENGIKTHFIEKLSDREQLVKKVEIIPL 84
Query: 95 ELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGC 154
E++VR AG SL+ KR L + + L P++ K+ E
Sbjct: 85 EVVVRNIAAG----SLV------KR------LG--IEEGTVLDPPIVEFYYKNDE----L 122
Query: 155 DQP-ISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQN 213
P I+ + I+ G+ T + + I AL + E + E G+ILVD K EFG DK
Sbjct: 123 GDPLINEDHILALGLATEEELKEIKELALKINEVLSEFFAEIGIILVDFKLEFGRDKDGE 182
Query: 214 IILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRN 254
I+LADEI +PD+ R W+ ET EK LDKD R
Sbjct: 183 IVLADEI-SPDTCRLWDKETGEK----------LDKDRFRR 212
>gnl|CDD|133471 cd01416, SAICAR_synt_Ade5, Ade5_like
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic group of
SAICAR synthetases represented by the Drosophila
melanogaster, N-terminal, SAICAR synthetase domain of
bifunctional Ade5. The Ade5 gene product (CAIR-SAICARs)
catalyzes the sixth and seventh steps of the de novo
biosynthesis of purine nucleotides (also reported as
seventh and eighth steps). SAICAR synthetase converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 252
Score = 44.2 bits (105), Expect = 4e-05
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 44/231 (19%)
Query: 16 YSGKVRENYFLSD--GTRITIATDRLSAFD---QNIACIPYKGEVLNQITQYWFH--HTS 68
GK + Y L D G + + DR++A D ++ I K + N+ T F +
Sbjct: 8 IEGKTKIVYELPDQPGLVLIQSKDRITAGDGARKDE--IEGKAAISNKTTSNVFELLQEA 65
Query: 69 DICSNHTLDYPDPNVLVGQQLQMFPIELIVR-----GYLAGNTKTSLLTFYKNGKR---- 119
I + H + P + ++ +M PIE + R +L N K G R
Sbjct: 66 GIKT-HFVKQCSPTAFIARKCEMIPIEWVCRRIATGSFLKRNPGV------KEGYRFSPP 118
Query: 120 KIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISS 179
K+ E+ D+ + + P + +Q + + + + + ++
Sbjct: 119 KL-EFFYKDDANHD-----PQWSE-----------EQLLEAKLNCGGLKIGKKEVDIMTK 161
Query: 180 YALSLFERGCKLALENGLILVDSKYEFGID-KKQNIILADEIHTPDSSRYW 229
+++FE K LVD K EFG+D I+LAD I DS R W
Sbjct: 162 STIAIFEILEKAWATQDCTLVDMKIEFGVDVTTGEILLADVIDN-DSWRLW 211
>gnl|CDD|37649 KOG2438, KOG2438, KOG2438, Glutamyl-tRNA amidotransferase subunit B
[Translation, ribosomal structure and biogenesis].
Length = 505
Score = 33.0 bits (75), Expect = 0.11
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDR--LSAFDQNIACIPYKGEVLNQITQYWFHH 66
+PELP+ K+ E Y LS +T+A + L + ++ I YK E ++ YW
Sbjct: 316 LPELPDATREKLVEQYGLSAKDAVTLANEVELLEFYKDSVRIIKYKAETTPKLITYWIKE 375
Query: 67 TSDICSNHTLDYPDPNVLVGQQL 89
P+ +++ +QL
Sbjct: 376 EFLGYLRQIALSPNQSIVTPRQL 398
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers..
Length = 90
Score = 28.3 bits (64), Expect = 2.7
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 21/53 (39%)
Query: 161 NEIIHRGILTRNQWETISSYALSLFERGCKLA---------LENGLILVDSKY 204
E +HRGI R FER LA LENGL+ +D +
Sbjct: 50 REYLHRGIAKRA------------FERSFNLADHVKVKGAELENGLLTIDLER 90
>gnl|CDD|36131 KOG0913, KOG0913, KOG0913, Thiol-disulfide isomerase and
thioredoxin [Posttranslational modification, protein
turnover, chaperones, Energy production and conversion].
Length = 248
Score = 27.7 bits (61), Expect = 4.5
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 99 RGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPI 158
R Y K ++F ++ + + + + + +K P + SAS +
Sbjct: 107 RRYSGARDKNDFISFEEHREWQSIDP-----VPEWEK-------PDSTEMSSASSLFKLE 154
Query: 159 SPNEIIHRGILTRNQWETISSYALSLFERGCKLAL 193
+ + L +W + + +A G L L
Sbjct: 155 EELKDLGDEDLGLPEWGSYNLFAGVTEFVGEALGL 189
>gnl|CDD|39637 KOG4436, KOG4436, KOG4436, Predicted GTPase activator NB4S/EVI5
(contains TBC domain)/Calmodulin-binding protein Pollux
(contains PTB and TBC domains) [General function
prediction only].
Length = 948
Score = 27.3 bits (60), Expect = 5.3
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 279 SQTYIAAY--------EKITGLKFIADNSELPPLERIRNNLRKYTHRHLS 320
+A Y E++T + D + + LE ++L+ L
Sbjct: 827 ISKQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLE 876
>gnl|CDD|31530 COG1339, COG1339, Transcriptional regulator of a riboflavin/FAD
biosynthetic operon [Transcription / Coenzyme
metabolism].
Length = 214
Score = 27.2 bits (60), Expect = 6.2
Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 30/140 (21%)
Query: 147 SSESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYE- 205
SS++A+ + + I R I R Q TI+ E G+ L+ +YE
Sbjct: 32 SSQTAARKLKELEDEGYITRTISKRGQLITIT---------------EKGIDLLYKEYED 76
Query: 206 --FGIDKKQNIILADEIHT--PDSSRYWEVETYEKSFRE--GITP------IGLDKDFIR 253
D NI++ E+ + + Y + Y + FRE G P + +D + +
Sbjct: 77 LSRIFDSGGNIVIEGEVVSGLGEGRYYVSLPGYRRQFREKLGFDPYPGTLNVKVDPESLI 136
Query: 254 NWILTRCNPYRDNIPDIPEN 273
L R I
Sbjct: 137 ERRLRESRGIR--IEGFKTE 154
>gnl|CDD|39972 KOG4775, KOG4775, KOG4775, Uncharacterized protein SFI1 involved in
G(2)-M transition [Cell cycle control, cell division,
chromosome partitioning].
Length = 840
Score = 27.0 bits (59), Expect = 7.4
Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 16/169 (9%)
Query: 144 TTKSSESA-SGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLI---- 198
TTKS+E+ P + I +L + T S+ + + L G
Sbjct: 6 TTKSTENLLRDKFVPETSPTNIPTDVLIKQGQITDSTEERYIVNALKPIELTEGFFEDPP 65
Query: 199 ---------LVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDK 249
+ +YE D +N + D Y ++E + F E I
Sbjct: 66 FHLPSPPVDSTNLEYEDVTDLPKNGLRYDLSVEVIEDLYRQIEAFLVHFMENDPFIVNGD 125
Query: 250 DFIRNWILTRCNPYRDNIPDIPEN--IILRTSQTYIAAYEKITGLKFIA 296
D+ + + + + ++ + R + Y + +KI +
Sbjct: 126 DYRSRSNQQKSSQFASEVAQTIKSQTAMFRRADQYRSQKDKILLANSLD 174
>gnl|CDD|33990 COG4268, McrC, McrBC 5-methylcytosine restriction system component
[Defense mechanisms].
Length = 439
Score = 26.8 bits (59), Expect = 8.3
Identities = 4/34 (11%), Positives = 14/34 (41%)
Query: 263 YRDNIPDIPENIILRTSQTYIAAYEKITGLKFIA 296
+ + D P N +++++ + + + A
Sbjct: 189 FDEFNEDNPLNRLIKSTLEILKSQTSLPTNLREA 222
>gnl|CDD|133411 cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the
CadR and PbrR transcription regulators.
Helix-turn-helix (HTH) CadR and PbrR transcription
regulators including Pseudomonas aeruginosa CadR and
Ralstonia metallidurans PbrR that regulate expression of
the cadmium and lead resistance operons, respectively.
These proteins are comprised of distinct domains that
harbor the regulatory (effector-binding) site and the
active (DNA-binding) site. Their conserved N-terminal
domains contain predicted winged HTH motifs that mediate
DNA binding, while the C-terminal domains have three
conserved cysteines which form a putative metal binding
site. Some members in this group have a histidine-rich
C-terminal extension. These proteins share the
N-terminal DNA binding domain with other transcription
regulators of the MerR superfamily that promote
transcription by reconfiguring the spacer between the
-35 and -10 promoter elements.
Length = 127
Score = 26.8 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 286 YEKITGLKFIADNSELPPLERIRNNLRKYTHRHL 319
YEK GL LP R NN R Y HL
Sbjct: 20 YEKE-GL--------LPAPARSANNYRLYDEEHL 44
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,108,233
Number of extensions: 217140
Number of successful extensions: 482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 24
Length of query: 323
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,232,491
Effective search space: 969240439
Effective search space used: 969240439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)