RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780493|ref|YP_003064906.1|
phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus
Liberibacter asiaticus str. psy62]
(323 letters)
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ligase, phosphoribosylaminoimidazolesuccinocarboxamide
(saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A
{Saccharomyces cerevisiae} (A:113-252)
Length = 140
Score = 133 bits (337), Expect = 3e-32
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 10/147 (6%)
Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSES 150
+ P+E+IVRGY+ G S Y ++ P + ++Q+ P P+ TP+TK+ +
Sbjct: 1 LIPLEVIVRGYITG----SAWKEYVKT-GTVHGLKQPQGLKESQEFPEPIFTPSTKAEQG 55
Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210
+ + + ++ + ++ A+ L+ + A E G+I+ D+K+EFGID+
Sbjct: 56 ----EHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDE 111
Query: 211 KQN-IILADEIHTPDSSRYWEVETYEK 236
K N IIL DE+ TPDSSR+W +Y+
Sbjct: 112 KTNEIILVDEVLTPDSSRFWNGASYKV 138
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
2-layer sandwich, ligase, purine biosynthesis,
structural genomics; HET: ATP CIT; 2.03A
{Methanocaldococcus jannaschii} PDB: 2yzl_A* (A:92-222)
Length = 131
Score = 127 bits (322), Expect = 2e-30
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 32/163 (19%)
Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSES 150
+ PIE+IVR AG SL Y + ++LP+P++ K+ E
Sbjct: 1 IIPIEVIVRNIAAG----SLCRRYP--------------FEEGKELPFPIVQFDYKNDE- 41
Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210
D ++ + + G+ TR + I AL + E KL E G+ILVD K E G D+
Sbjct: 42 --YGDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDR 99
Query: 211 KQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR 253
+ N+++ADEI +PD+ R W+ ET + LDKD R
Sbjct: 100 EGNLLVADEI-SPDTMRLWDKETRDV----------LDKDVFR 131
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase;
ADP complex, structural genomics, NPPSFA; HET: ADP;
1.75A {Geobacillus kaustophilus} (A:89-219)
Length = 131
Score = 125 bits (316), Expect = 6e-30
Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%)
Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSES 150
+ P+E++VR +AG SL + L P++ K+ +
Sbjct: 1 IIPLEVVVRNVVAG----SLAKRIGLEEG--------------TPLEAPLVEFYYKNDD- 41
Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210
D + + I + +R + + AL++ + E + L+D K EFG
Sbjct: 42 --LGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTA 99
Query: 211 KQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR 253
I+LADEI +PD+ R W+ +T EK LDKD R
Sbjct: 100 DGAILLADEI-SPDTCRLWDAKTNEK----------LDKDVFR 131
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ssgcid, NIH, niaid, SBRI, UW, emerald biostructures,
ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str}
(A:105-240)
Length = 136
Score = 122 bits (309), Expect = 4e-29
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 35/168 (20%)
Query: 89 LQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSS 148
+ + PIE+++R AG + ++ P+I K+
Sbjct: 1 ITIIPIEVVIRNLAAG----NFSKRFQIADG--------------TPFKSPIIEFYYKND 42
Query: 149 ESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGI 208
E D +S I+ LT + E I +L + +L G+ LVD K EFG
Sbjct: 43 E---LSDPMVSEGHILSFQWLTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGK 99
Query: 209 ---DKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR 253
D++ ++ LADEI +PD+ R W++ T ++ LDKD R
Sbjct: 100 LHNDEQSDLFLADEI-SPDTCRLWDISTNKR----------LDKDRYR 136
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
PURC, ADE2, ADE1, nucleotide complex, octahedral
magnesium coordination; HET: ADP; 2.00A {Escherichia
coli} PDB: 2gqs_A* (A:86-237)
Length = 152
Score = 122 bits (307), Expect = 7e-29
Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 33/173 (19%)
Query: 93 PIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESAS 152
P+E +VR AG SL+ + + +L P+ K+
Sbjct: 3 PVECVVRNRAAG----SLVK----------RLGIEEG----IELNPPLFDLFLKNDAX-- 42
Query: 153 GCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQ 212
D ++ + G +++ + KL + GLILVD K EFG+ K
Sbjct: 43 -HDPXVNESYCETFGWVSKENLARXKELTYKANDVLKKLFDDAGLILVDFKLEFGLY-KG 100
Query: 213 NIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRD 265
++L DE +PD SR W+ ET EK DKD R + Y
Sbjct: 101 EVVLGDEF-SPDGSRLWDKETLEK----------XDKDRFRQSLGGLIEAYEA 142
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase,
lyase; 2.80A {Homo sapiens} (A:90-234)
Length = 145
Score = 122 bits (307), Expect = 7e-29
Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 23/167 (13%)
Query: 88 QLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKS 147
Q + PIE + R G S L K Y + P
Sbjct: 1 QCEXIPIEWVCRRIATG----SFLKRNPGVK---EGYKFYPPKVELFFKDDANNDPQWSE 53
Query: 148 SESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFG 207
+ ++ + + + S ++FE K L LVD K EFG
Sbjct: 54 EQ-----LIAAKFCFA--GLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTLVDXKIEFG 106
Query: 208 IDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRN 254
+D I+ ++ DS R W + DK R+
Sbjct: 107 VDVTTKEIVLADVIDNDSWRLWPSGDRSQQK---------DKQSYRD 144
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima}
(A:79-199)
Length = 121
Score = 110 bits (278), Expect = 2e-25
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 22/138 (15%)
Query: 92 FPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESA 151
FP+E++VR AG S + Y ++ + LP P++ K E
Sbjct: 2 FPLEVVVRLKKAG----SFVRRY--------------GGAEGEDLPVPLVEFFIKDDE-- 41
Query: 152 SGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKK 211
D + + + GI T+ Q E A+ + + L D KYEFG+DK
Sbjct: 42 -RHDPXVCVDHLEILGIATKKQAEKXKEAAVKITLALKEFFERANFELWDIKYEFGLDKD 100
Query: 212 QNIILADEIHTPDSSRYW 229
N++L DEI +PD+ R
Sbjct: 101 GNVVLGDEI-SPDTFRLR 117
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ligase, phosphoribosylaminoimidazolesuccinocarboxamide
(saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A
{Saccharomyces cerevisiae} (A:1-112,A:253-305)
Length = 165
Score = 87.9 bits (218), Expect = 1e-18
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 4 LSKAYIPE-LPNYYSGKVRENYFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQ 61
++K + LP GKVR+ Y + GT + +ATDR+SA+D IP KG +L ++++
Sbjct: 2 ITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSE 61
Query: 62 YWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVR 99
+WF S+ NH +D +
Sbjct: 62 FWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKT 99
Score = 65.2 bits (159), Expect = 1e-11
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 17/135 (12%)
Query: 160 PNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADE 219
N I +GIL + +S + + N L+ + +
Sbjct: 46 ENSIPEKGILL-TK---LSEFWFKFLSNDVR----NHLVDIAPGKTIFDYLPAKLSEPKY 97
Query: 220 IHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTS 279
++E + + DK F+R+W+ + +P++I+ RT
Sbjct: 98 K--------TQLEDRSLLVHKHKSQDSYDKQFLRDWLTANKLNGVN-GVKMPQDIVDRTR 148
Query: 280 QTYIAAYEKITGLKF 294
YI AYE +TG K+
Sbjct: 149 AKYIEAYETLTGSKW 163
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
2-layer sandwich, ligase, purine biosynthesis,
structural genomics; HET: ATP CIT; 2.03A
{Methanocaldococcus jannaschii} PDB: 2yzl_A*
(A:1-91,A:223-242)
Length = 111
Score = 80.9 bits (200), Expect = 2e-16
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHHT 67
I + YSGK + Y + D + D ++A + KG + I+ F
Sbjct: 8 ILKKQPLYSGKAKSIYEIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEAL 67
Query: 68 SDI-CSNHTLDYPDPNVLVGQQLQ 90
+ H + Y +P ++ ++++
Sbjct: 68 EENGVKTHYIKYIEPRYMIAKKVE 91
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
ssgcid, NIH, niaid, SBRI, UW, emerald biostructures,
ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str}
(A:1-104,A:241-263)
Length = 127
Score = 76.8 bits (189), Expect = 4e-15
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 9 IPELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHH 66
+ Y GK + + + I D ++AF+ A I KG + N I+ +
Sbjct: 22 MENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKK 81
Query: 67 TSDI-CSNHTLDYPDPNVLVGQQLQM 91
D H + + + ++L +
Sbjct: 82 LIDKGIKTHFISLLNQREQLVKKLNL 107
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide
synthetase; ADP complex, structural genomics, NPPSFA;
HET: ADP; 1.75A {Geobacillus kaustophilus}
(A:1-88,A:220-244)
Length = 113
Score = 74.4 bits (183), Expect = 2e-14
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 9 IPELPNYYSGKVRENYFLSDGTRITI-ATDRLSAFDQN-IACIPYKGEVLNQITQYWFHH 66
+ Y GK ++ Y + + + D +AF+ A I KG + N+I+ F
Sbjct: 4 PTKQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLK 63
Query: 67 TSDI-CSNHTLDYPDPNVLVGQQL 89
+ +NH ++ P + +++
Sbjct: 64 LREAGIANHFIEKLSPTEQLVRRV 87
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase,
lyase; 2.80A {Homo sapiens}
(A:1-89,A:235-260,A:395-425)
Length = 146
Score = 72.2 bits (177), Expect = 1e-13
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 9 IPELPNYYSGKVRENYFLSD--GTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFH 65
+ Y GK +E Y L D G + + D+++A + + K + N+IT F
Sbjct: 7 LNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQ 66
Query: 66 HTSDI-CSNHTLDYPDPNVLVGQQ 88
+ + +
Sbjct: 67 LLQEAGIKTAFTRKCGETAFIAPK 90
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
PURC, ADE2, ADE1, nucleotide complex, octahedral
magnesium coordination; HET: ADP; 2.00A {Escherichia
coli} PDB: 2gqs_A* (A:1-85)
Length = 85
Score = 71.6 bits (176), Expect = 1e-13
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 11 ELPNYYSGKVRENYFLSDGTR-ITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTS 68
+ Y GK + Y + + + SA D I KG V N+ + +
Sbjct: 3 KQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGXVNNKFNYFIXSKLA 62
Query: 69 DI-CSNHTLDYPDPNVLVGQQL 89
+ + ++L
Sbjct: 63 EAGIPTQXERLLSDTECLVKKL 84
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
structural genomics, saicar synthetase, PSI, protein
structure initiative; 2.20A {Thermotoga maritima}
(A:1-78,A:200-230)
Length = 109
Score = 69.7 bits (171), Expect = 5e-13
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 16 YSGKVRENYFLSDGTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHHTSDI-CSN 73
Y GK + + D ++A D + KG + + T + S+
Sbjct: 3 YEGKTKIVKVT-GDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILXKYLSEKGIKT 61
Query: 74 HTLDYPDPNVLVGQQLQMF 92
H ++Y P L L++F
Sbjct: 62 HLVEYIPPRTLKVIPLKIF 80
>1vd0_A Head decoration protein; virus/viral protein, capsid
protein, structural genomics, NPPSFA; NMR
{Enterobacteria phage lambda} (A:)
Length = 109
Score = 27.6 bits (61), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 102 LAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135
+A + ++ LTFYK+G + + L P+ SD K
Sbjct: 63 VAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 96
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic
subunit delta isoform; transferase, phosphoprotein,
isoform-specific inhibitors, cancer; HET: 039; 1.90A
{Mus musculus} PDB: 2wxe_A* 2wxg_A* 2wxh_A* 2wxi_A*
2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A*
2wxq_A* 2wxr_A (A:74-175)
Length = 102
Score = 27.1 bits (60), Expect = 3.2
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 232 ETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITG 291
E E+SF ++ + + + + +R + + PE L+ +
Sbjct: 20 EGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGR---------- 69
Query: 292 LKFIADNSELPPLERIRNNLRKYTHRHLS 320
+++ N L + I + L HL+
Sbjct: 70 HEYLYGNYPLCHFQYICSCLHSGLTPHLT 98
>1c5e_A Head decoration protein; head protein D, protein virus
assembly, phage display; 1.10A {Bacteriophage lambda}
(A:)
Length = 95
Score = 26.9 bits (59), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 102 LAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135
+A + ++ LTFYK+G + + L P+ SD K
Sbjct: 49 VAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 82
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,565,690
Number of extensions: 115184
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 25
Length of query: 323
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 234
Effective length of database: 1,947,404
Effective search space: 455692536
Effective search space used: 455692536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)