RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] (323 letters) >2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} (A:113-252) Length = 140 Score = 133 bits (337), Expect = 3e-32 Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 10/147 (6%) Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSES 150 + P+E+IVRGY+ G S Y ++ P + ++Q+ P P+ TP+TK+ + Sbjct: 1 LIPLEVIVRGYITG----SAWKEYVKT-GTVHGLKQPQGLKESQEFPEPIFTPSTKAEQG 55 Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210 + + + ++ + ++ A+ L+ + A E G+I+ D+K+EFGID+ Sbjct: 56 ----EHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDE 111 Query: 211 KQN-IILADEIHTPDSSRYWEVETYEK 236 K N IIL DE+ TPDSSR+W +Y+ Sbjct: 112 KTNEIILVDEVLTPDSSRFWNGASYKV 138 >2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A* (A:92-222) Length = 131 Score = 127 bits (322), Expect = 2e-30 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 32/163 (19%) Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSES 150 + PIE+IVR AG SL Y + ++LP+P++ K+ E Sbjct: 1 IIPIEVIVRNIAAG----SLCRRYP--------------FEEGKELPFPIVQFDYKNDE- 41 Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210 D ++ + + G+ TR + I AL + E KL E G+ILVD K E G D+ Sbjct: 42 --YGDPMLNEDIAVALGLATREELNKIKEIALKVNEVLKKLFDEKGIILVDFKIEIGKDR 99 Query: 211 KQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR 253 + N+++ADEI +PD+ R W+ ET + LDKD R Sbjct: 100 EGNLLVADEI-SPDTMRLWDKETRDV----------LDKDVFR 131 >2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} (A:89-219) Length = 131 Score = 125 bits (316), Expect = 6e-30 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%) Query: 91 MFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSES 150 + P+E++VR +AG SL + L P++ K+ + Sbjct: 1 IIPLEVVVRNVVAG----SLAKRIGLEEG--------------TPLEAPLVEFYYKNDD- 41 Query: 151 ASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDK 210 D + + I + +R + + AL++ + E + L+D K EFG Sbjct: 42 --LGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTA 99 Query: 211 KQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR 253 I+LADEI +PD+ R W+ +T EK LDKD R Sbjct: 100 DGAILLADEI-SPDTCRLWDAKTNEK----------LDKDVFR 131 >3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str} (A:105-240) Length = 136 Score = 122 bits (309), Expect = 4e-29 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 35/168 (20%) Query: 89 LQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSS 148 + + PIE+++R AG + ++ P+I K+ Sbjct: 1 ITIIPIEVVIRNLAAG----NFSKRFQIADG--------------TPFKSPIIEFYYKND 42 Query: 149 ESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGI 208 E D +S I+ LT + E I +L + +L G+ LVD K EFG Sbjct: 43 E---LSDPMVSEGHILSFQWLTNQELEKIKILSLKINNILSELFFNVGIKLVDFKLEFGK 99 Query: 209 ---DKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIR 253 D++ ++ LADEI +PD+ R W++ T ++ LDKD R Sbjct: 100 LHNDEQSDLFLADEI-SPDTCRLWDISTNKR----------LDKDRYR 136 >2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A* (A:86-237) Length = 152 Score = 122 bits (307), Expect = 7e-29 Identities = 43/173 (24%), Positives = 65/173 (37%), Gaps = 33/173 (19%) Query: 93 PIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESAS 152 P+E +VR AG SL+ + + +L P+ K+ Sbjct: 3 PVECVVRNRAAG----SLVK----------RLGIEEG----IELNPPLFDLFLKNDAX-- 42 Query: 153 GCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQ 212 D ++ + G +++ + KL + GLILVD K EFG+ K Sbjct: 43 -HDPXVNESYCETFGWVSKENLARXKELTYKANDVLKKLFDDAGLILVDFKLEFGLY-KG 100 Query: 213 NIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRD 265 ++L DE +PD SR W+ ET EK DKD R + Y Sbjct: 101 EVVLGDEF-SPDGSRLWDKETLEK----------XDKDRFRQSLGGLIEAYEA 142 >2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} (A:90-234) Length = 145 Score = 122 bits (307), Expect = 7e-29 Identities = 32/167 (19%), Positives = 49/167 (29%), Gaps = 23/167 (13%) Query: 88 QLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKS 147 Q + PIE + R G S L K Y + P Sbjct: 1 QCEXIPIEWVCRRIATG----SFLKRNPGVK---EGYKFYPPKVELFFKDDANNDPQWSE 53 Query: 148 SESASGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFG 207 + ++ + + + S ++FE K L LVD K EFG Sbjct: 54 EQ-----LIAAKFCFA--GLLIGQTEVDIXSHATQAIFEILEKSWLPQNCTLVDXKIEFG 106 Query: 208 IDKKQNIILADEIHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRN 254 +D I+ ++ DS R W + DK R+ Sbjct: 107 VDVTTKEIVLADVIDNDSWRLWPSGDRSQQK---------DKQSYRD 144 >1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:79-199) Length = 121 Score = 110 bits (278), Expect = 2e-25 Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 22/138 (15%) Query: 92 FPIELIVRGYLAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQKLPYPVITPTTKSSESA 151 FP+E++VR AG S + Y ++ + LP P++ K E Sbjct: 2 FPLEVVVRLKKAG----SFVRRY--------------GGAEGEDLPVPLVEFFIKDDE-- 41 Query: 152 SGCDQPISPNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKK 211 D + + + GI T+ Q E A+ + + L D KYEFG+DK Sbjct: 42 -RHDPXVCVDHLEILGIATKKQAEKXKEAAVKITLALKEFFERANFELWDIKYEFGLDKD 100 Query: 212 QNIILADEIHTPDSSRYW 229 N++L DEI +PD+ R Sbjct: 101 GNVVLGDEI-SPDTFRLR 117 >2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} (A:1-112,A:253-305) Length = 165 Score = 87.9 bits (218), Expect = 1e-18 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 4 LSKAYIPE-LPNYYSGKVRENYFLSDGTRITIATDRLSAFD-QNIACIPYKGEVLNQITQ 61 ++K + LP GKVR+ Y + GT + +ATDR+SA+D IP KG +L ++++ Sbjct: 2 ITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSE 61 Query: 62 YWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVR 99 +WF S+ NH +D + Sbjct: 62 FWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKT 99 Score = 65.2 bits (159), Expect = 1e-11 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 17/135 (12%) Query: 160 PNEIIHRGILTRNQWETISSYALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADE 219 N I +GIL + +S + + N L+ + + Sbjct: 46 ENSIPEKGILL-TK---LSEFWFKFLSNDVR----NHLVDIAPGKTIFDYLPAKLSEPKY 97 Query: 220 IHTPDSSRYWEVETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTS 279 ++E + + DK F+R+W+ + +P++I+ RT Sbjct: 98 K--------TQLEDRSLLVHKHKSQDSYDKQFLRDWLTANKLNGVN-GVKMPQDIVDRTR 148 Query: 280 QTYIAAYEKITGLKF 294 YI AYE +TG K+ Sbjct: 149 AKYIEAYETLTGSKW 163 >2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A* (A:1-91,A:223-242) Length = 111 Score = 80.9 bits (200), Expect = 2e-16 Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 9 IPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHHT 67 I + YSGK + Y + D + D ++A + KG + I+ F Sbjct: 8 ILKKQPLYSGKAKSIYEIDDDKVLIEFRDDITAGNGAKHDVKQGKGYLNALISSKLFEAL 67 Query: 68 SDI-CSNHTLDYPDPNVLVGQQLQ 90 + H + Y +P ++ ++++ Sbjct: 68 EENGVKTHYIKYIEPRYMIAKKVE 91 >3kre_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ATP-binding, ligase; 1.80A {Ehrlichia chaffeensis str} (A:1-104,A:241-263) Length = 127 Score = 76.8 bits (189), Expect = 4e-15 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 3/86 (3%) Query: 9 IPELPNYYSGKVRENYFLSD-GTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHH 66 + Y GK + + + I D ++AF+ A I KG + N I+ + Sbjct: 22 MENKEKIYEGKAKIIFATLNPLEVIQHFKDEITAFNNKKAAIIHEKGILNNYISSFLMKK 81 Query: 67 TSDI-CSNHTLDYPDPNVLVGQQLQM 91 D H + + + ++L + Sbjct: 82 LIDKGIKTHFISLLNQREQLVKKLNL 107 >2ywv_A Phosphoribosylaminoimidazole succinocarboxamide synthetase; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} (A:1-88,A:220-244) Length = 113 Score = 74.4 bits (183), Expect = 2e-14 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 9 IPELPNYYSGKVRENYFLSDGTRITI-ATDRLSAFDQN-IACIPYKGEVLNQITQYWFHH 66 + Y GK ++ Y + + + D +AF+ A I KG + N+I+ F Sbjct: 4 PTKQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLK 63 Query: 67 TSDI-CSNHTLDYPDPNVLVGQQL 89 + +NH ++ P + +++ Sbjct: 64 LREAGIANHFIEKLSPTEQLVRRV 87 >2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} (A:1-89,A:235-260,A:395-425) Length = 146 Score = 72.2 bits (177), Expect = 1e-13 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 9 IPELPNYYSGKVRENYFLSD--GTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFH 65 + Y GK +E Y L D G + + D+++A + + K + N+IT F Sbjct: 7 LNIGKKLYEGKTKEVYELLDSPGKVLLQSKDQITAGNAARKNHLEGKAAISNKITSCIFQ 66 Query: 66 HTSDI-CSNHTLDYPDPNVLVGQQ 88 + + + Sbjct: 67 LLQEAGIKTAFTRKCGETAFIAPK 90 >2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A* (A:1-85) Length = 85 Score = 71.6 bits (176), Expect = 1e-13 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 3/82 (3%) Query: 11 ELPNYYSGKVRENYFLSDGTR-ITIATDRLSAFD-QNIACIPYKGEVLNQITQYWFHHTS 68 + Y GK + Y + + + SA D I KG V N+ + + Sbjct: 3 KQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFDRKGXVNNKFNYFIXSKLA 62 Query: 69 DI-CSNHTLDYPDPNVLVGQQL 89 + + ++L Sbjct: 63 EAGIPTQXERLLSDTECLVKKL 84 >1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-78,A:200-230) Length = 109 Score = 69.7 bits (171), Expect = 5e-13 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%) Query: 16 YSGKVRENYFLSDGTRITIATDRLSAFDQN-IACIPYKGEVLNQITQYWFHHTSDI-CSN 73 Y GK + + D ++A D + KG + + T + S+ Sbjct: 3 YEGKTKIVKVT-GDYALLEFKDDITAGDGLKHDVLTGKGSICAETTAILXKYLSEKGIKT 61 Query: 74 HTLDYPDPNVLVGQQLQMF 92 H ++Y P L L++F Sbjct: 62 HLVEYIPPRTLKVIPLKIF 80 >1vd0_A Head decoration protein; virus/viral protein, capsid protein, structural genomics, NPPSFA; NMR {Enterobacteria phage lambda} (A:) Length = 109 Score = 27.6 bits (61), Expect = 2.2 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 102 LAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135 +A + ++ LTFYK+G + + L P+ SD K Sbjct: 63 VAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 96 >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors, cancer; HET: 039; 1.90A {Mus musculus} PDB: 2wxe_A* 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A (A:74-175) Length = 102 Score = 27.1 bits (60), Expect = 3.2 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 232 ETYEKSFREGITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITG 291 E E+SF ++ + + + + +R + + PE L+ + Sbjct: 20 EGSEESFTFQVSTKDMPLALMACALRKKATVFRQPLVEQPEEYALQVNGR---------- 69 Query: 292 LKFIADNSELPPLERIRNNLRKYTHRHLS 320 +++ N L + I + L HL+ Sbjct: 70 HEYLYGNYPLCHFQYICSCLHSGLTPHLT 98 >1c5e_A Head decoration protein; head protein D, protein virus assembly, phage display; 1.10A {Bacteriophage lambda} (A:) Length = 95 Score = 26.9 bits (59), Expect = 3.3 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 102 LAGNTKTSLLTFYKNGKRKIYEYLLPDNMSDNQK 135 +A + ++ LTFYK+G + + L P+ SD K Sbjct: 49 VAADQTSTTLTFYKSGTFRYEDVLWPEAASDETK 82 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.137 0.413 Gapped Lambda K H 0.267 0.0646 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,565,690 Number of extensions: 115184 Number of successful extensions: 277 Number of sequences better than 10.0: 1 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 25 Length of query: 323 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 234 Effective length of database: 1,947,404 Effective search space: 455692536 Effective search space used: 455692536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.1 bits)