BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] (323 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780493|ref|YP_003064906.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 323 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/323 (100%), Positives = 323/323 (100%) Query: 1 MRILSKAYIPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQIT 60 MRILSKAYIPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQIT Sbjct: 1 MRILSKAYIPELPNYYSGKVRENYFLSDGTRITIATDRLSAFDQNIACIPYKGEVLNQIT 60 Query: 61 QYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRK 120 QYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRK Sbjct: 61 QYWFHHTSDICSNHTLDYPDPNVLVGQQLQMFPIELIVRGYLAGNTKTSLLTFYKNGKRK 120 Query: 121 IYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSY 180 IYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSY Sbjct: 121 IYEYLLPDNMSDNQKLPYPVITPTTKSSESASGCDQPISPNEIIHRGILTRNQWETISSY 180 Query: 181 ALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFRE 240 ALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFRE Sbjct: 181 ALSLFERGCKLALENGLILVDSKYEFGIDKKQNIILADEIHTPDSSRYWEVETYEKSFRE 240 Query: 241 GITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSE 300 GITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSE Sbjct: 241 GITPIGLDKDFIRNWILTRCNPYRDNIPDIPENIILRTSQTYIAAYEKITGLKFIADNSE 300 Query: 301 LPPLERIRNNLRKYTHRHLSSRN 323 LPPLERIRNNLRKYTHRHLSSRN Sbjct: 301 LPPLERIRNNLRKYTHRHLSSRN 323 >gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 817 Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 179 SYALSLFERGCKLALENGLILVDSKYEFGIDKK---QNIILADEIHTPDSSRYWEVETYE 235 SY+ S F R + + G Y +D ++I+ I + W+ E Y Sbjct: 461 SYSQSEFNRSTQAMRQPGSCFKPIVYAAALDSGYTPASVIMDAPIEVVSRGKIWKPENYS 520 Query: 236 KSFREGIT-PIGLDKDFIRNWILTRC 260 K+F T GL+K RN + R Sbjct: 521 KNFSGASTLRFGLEKS--RNLMTVRL 544 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 23.9 bits (50), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 9/61 (14%) Query: 164 IHRGILTRNQWE-TISSYALSLFERGCKLALEN-GLILVDSKYEFGIDKKQNIILADEIH 221 +H+ +T Q + I ++AL K+ N GLI++D + FG+ K+ + E H Sbjct: 719 LHKKSITEGQVDIVIGTHAL----LNPKITFANLGLIIIDEEQHFGVKHKEAL---KETH 771 Query: 222 T 222 T Sbjct: 772 T 772 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 221,889 Number of Sequences: 1233 Number of extensions: 9402 Number of successful extensions: 15 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 4 length of query: 323 length of database: 328,796 effective HSP length: 74 effective length of query: 249 effective length of database: 237,554 effective search space: 59150946 effective search space used: 59150946 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)