Query gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 314
No_of_seqs 131 out of 2011
Neff 8.3
Searched_HMMs 33803
Date Wed Jun 1 17:07:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780494.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3h90_A Ferrous-iron efflux pu 100.0 2.1E-37 6.3E-42 248.7 5.0 201 11-227 2-202 (202)
2 >3byp_A CZRB protein; membrane 99.2 4E-10 1.2E-14 80.7 11.4 84 222-310 1-87 (94)
3 >3h90_A Ferrous-iron efflux pu 99.2 7.1E-10 2.1E-14 79.2 11.6 78 227-309 1-78 (81)
4 >2zzt_A Putative uncharacteriz 99.1 3.6E-10 1.1E-14 81.0 8.8 84 222-310 2-86 (107)
5 >3h90_A Ferrous-iron efflux pu 96.3 0.0046 1.4E-07 37.2 3.9 97 131-227 6-102 (202)
6 >1uwd_A Hypothetical protein T 86.9 1.8 5.2E-05 21.3 5.6 75 233-312 9-88 (88)
7 >3cq1_A Putative uncharacteriz 86.0 2 5.9E-05 21.0 7.0 76 232-313 8-88 (103)
8 >2dbb_A Putative HTH-type tran 72.8 5.4 0.00016 18.3 6.1 63 235-310 24-87 (93)
9 >3lno_A Putative uncharacteriz 62.9 8.7 0.00026 17.0 4.8 75 233-313 11-92 (92)
10 >2zkq_c 40S ribosomal protein 56.9 8.7 0.00026 17.0 2.7 75 232-308 18-92 (94)
11 >2v50_A Multidrug resistance p 44.7 17 0.00051 15.2 6.6 77 225-306 14-94 (226)
12 >1r89_A TRNA nucleotidyltransf 44.5 17 0.00051 15.2 3.2 48 260-307 42-91 (127)
13 >2jp3_A FXYD domain-containing 44.3 17 0.00052 15.2 4.5 38 75-113 4-41 (67)
14 >1wh9_A 40S ribosomal protein 44.2 18 0.00052 15.2 5.1 76 231-308 8-83 (92)
15 >2zxe_G FXYD10, phospholemman- 43.4 18 0.00053 15.1 4.6 37 73-110 4-40 (74)
16 >2j8s_A ACRB, acriflavine resi 37.4 22 0.00066 14.5 7.3 69 225-298 14-83 (199)
17 >1ghh_A DINI, DNA-damage-induc 34.5 25 0.00074 14.2 6.5 43 264-309 3-47 (81)
18 >3cn5_A Aquaporin; membrane pr 33.6 26 0.00076 14.1 11.5 40 171-210 245-284 (304)
19 >2j8s_A ACRB, acriflavine resi 33.1 26 0.00078 14.1 7.0 65 233-298 127-195 (208)
20 >2w8a_A Glycine betaine transp 30.4 29 0.00086 13.8 14.7 17 82-98 360-376 (566)
21 >1b04_A Protein (DNA ligase); 28.4 32 0.00093 13.6 4.1 54 261-314 28-94 (106)
22 >3i1m_C 30S ribosomal protein 26.8 34 0.001 13.4 1.8 72 232-308 36-107 (109)
23 >3ixz_A Potassium-transporting 25.8 35 0.001 13.3 7.3 10 109-118 116-125 (168)
24 >2v50_A Multidrug resistance p 25.3 36 0.0011 13.2 6.0 66 232-298 126-195 (208)
25 >2vv5_A MSCS, small-conductanc 22.2 41 0.0012 12.9 11.0 81 228-311 16-101 (105)
26 >2jo1_A Phospholemman; FXYD1, 21.8 42 0.0012 12.8 4.2 36 78-114 6-41 (72)
27 >1mli_A Muconolactone isomeras 21.2 43 0.0013 12.8 5.9 25 288-312 63-87 (96)
No 1
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202)
Probab=100.00 E-value=2.1e-37 Score=248.73 Aligned_cols=201 Identities=18% Similarity=0.175 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHHHH
Q ss_conf 88999999999999999999999998379999999999999999999999999982000012037896437520456899
Q gi|254780494|r 11 EESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEP 90 (314)
Q Consensus 11 e~~~L~~sl~~~~~~a~~~~~~g~~sgS~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p~G~~r~E~ 90 (314)
|||.+++++..|+.+++.|+.+|+++||.++++|++||+.|+.+.++++++.++ ++||||++|||||+|.|+
T Consensus 2 ~~r~~~i~l~~~~~~~v~~~~~g~~t~S~allada~~sl~d~~~~~~~l~~~~~--------~~k~~~~~~pyG~~r~E~ 73 (202)
T 3h90_A 2 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRY--------SLQPADDNHSFGHGKAES 73 (202)
T ss_dssp CCTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHH--------HTCCCCSSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCCCCCCCHHHHHH
T ss_conf 878999999999999999999999980899999999999999999999999998--------279998889960666407
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999851479876511799999999998668899876410357779999999875788742
Q gi|254780494|r 91 MVLAFNSVILICVALYEFLISILNIISGGHDINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYL 170 (314)
Q Consensus 91 l~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~~~ 170 (314)
+++++.++++++.++++.+++++++++|++++.....+...+++.+++...++..++.+++.+|...+++..+++.|.+.
T Consensus 74 l~~~~~~~~l~~~~~~~~~~ai~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~l~ 153 (202)
T 3h90_A 74 LAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM 153 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 98877899899999999999999984357666776542002333234799999987630345776676423454133212
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 135799999999830134442046799899999999999988999999999995309
Q gi|254780494|r 171 LLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMT 227 (314)
Q Consensus 171 s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~~~~~~~~~~~~~Ll~~~ 227 (314)
|.++++++++.++ +.+|+||++++++++++++.+++++|++.++|+|.+
T Consensus 154 s~~vii~~l~~~~--------~~~~~D~i~~iii~~~i~~~~~~~~~~s~~~Ll~~a 202 (202)
T 3h90_A 154 NGAILLALGLSWY--------GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRA 202 (202)
T ss_dssp CSCSCSSSCSCST--------TSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3388999999994--------816675898999999999999999999977653677
No 2
>>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} (A:)
Probab=99.18 E-value=4e-10 Score=80.74 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=73.2
Q ss_pred HHHHCCC-HHHHHHHHHHHHHC--CCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9953099-78999999999715--76115100016787046769999999988899861099999999999999865489
Q gi|254780494|r 222 EIFQMTS-PDLDSQVREALYPI--VIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 222 ~Ll~~~~-~~~~~~I~~~i~~~--~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
.|||.+| ++..++|++.+.++ +++.++|++++| +.|+++++++|+++++++ ++.++|++.++++++|++.++
T Consensus 1 gLld~~~~~~~~~~i~~~i~~~~~~~V~~vh~lr~r--~~G~~~~v~~hi~v~~~~---~v~eah~i~~~ie~~l~~~~~ 75 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTR--RAGPRSFLEFHLVVRGDT---PVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEE--EETTEEEEEEEEEECTTC---BHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEE--EECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCC
T ss_conf 988888899999999999995689886688888889--989979999999989999---999999999999999997789
Q ss_pred CEEEEEEEECCC
Q ss_conf 219999985476
Q gi|254780494|r 299 ERWLTISFTTQK 310 (314)
Q Consensus 299 ~~~~~i~F~~~~ 310 (314)
..+++|++++..
T Consensus 76 i~~v~ih~ep~~ 87 (94)
T 3byp_A 76 GLQATIHVEPEG 87 (94)
T ss_dssp TEEEEEEEEECC
T ss_pred CCEEEEEECCCC
T ss_conf 867999989899
No 3
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:203-283)
Probab=99.15 E-value=7.1e-10 Score=79.19 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99789999999997157611510001678704676999999998889986109999999999999986548921999998
Q gi|254780494|r 227 TSPDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314)
Q Consensus 227 ~~~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314)
.|++..++|++.+.+++++.++|++++| +.|+.+++++|+.+|+++ ++++.|++.+++++.+++.+|..++++++
T Consensus 1 v~~e~~~~i~~~i~~~~gV~~vh~l~~r--~~G~~~~v~~hi~v~~~~---sv~eah~i~~~ie~~l~~~~~i~~v~ih~ 75 (81)
T 3h90_A 1 LPDEERQEIIDIVTSWPGVSGAHDLRTR--QSGPTRFIQIHLEMEDSL---PLVQAHMVADQVEQAILRRFPGSDVIIHQ 75 (81)
T ss_dssp CCHHHHHHHHHHHHHSSSCSEEEEEEEE--EETTEEEEEEEEECCTTC---BHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEEE--EECCCEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8677799999999759862313479999--958979999999989999---89999999999999999877998699994
Q ss_pred ECC
Q ss_conf 547
Q gi|254780494|r 307 TTQ 309 (314)
Q Consensus 307 ~~~ 309 (314)
++.
T Consensus 76 eP~ 78 (81)
T 3h90_A 76 DPC 78 (81)
T ss_dssp ECS
T ss_pred CCC
T ss_conf 785
No 4
>>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} (A:)
Probab=99.12 E-value=3.6e-10 Score=81.00 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=73.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC-E
Q ss_conf 995309978999999999715761151000167870467699999999888998610999999999999998654892-1
Q gi|254780494|r 222 EIFQMTSPDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEE-R 300 (314)
Q Consensus 222 ~Ll~~~~~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~-~ 300 (314)
.|+++.|++..++|++.+.+++++.+++++++ +++|+++++++|+.+++++ ++.++|++.+++++++++.+|+ .
T Consensus 2 ~L~~a~~~~~~~~I~~~i~~~~~V~~vh~lr~--r~~G~~~~v~~hi~v~~~~---tv~eah~i~~~ie~~i~~~~~~i~ 76 (107)
T 2zzt_A 2 DGXKRTELDXYDDIFAVLERFPNVHNPHRVRI--RRVGTKYFIEXDIEVDGKX---SVKDAHELTVKIRKEXLKRRDDIE 76 (107)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSSCEEEEEEEE--ECSCC-CEEEEEEEECTTS---CHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEECCCEE--EEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89763399999999999973999675457034--7888959999999989999---899999999999999998789975
Q ss_pred EEEEEEECCC
Q ss_conf 9999985476
Q gi|254780494|r 301 WLTISFTTQK 310 (314)
Q Consensus 301 ~~~i~F~~~~ 310 (314)
+++|++++..
T Consensus 77 ~v~I~~ep~~ 86 (107)
T 2zzt_A 77 DVTIHVEPLG 86 (107)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEECCCC
T ss_conf 6999968788
No 5
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:1-202)
Probab=96.27 E-value=0.0046 Score=37.23 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986688998764103577799999998757887421357999999998301344420467998999999999999
Q gi|254780494|r 131 SCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILP 210 (314)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~ 210 (314)
...+++.+..+...+.-.+--.+|..+.+|+.|...|.+.+.....+.-.+.-.+...+.|+..-..+++++..+.+++.
T Consensus 6 ~~i~l~~~~~~~v~~~~~g~~t~S~allada~~sl~d~~~~~~~l~~~~~~~k~~~~~~pyG~~r~E~l~~~~~~~~l~~ 85 (202)
T 3h90_A 6 AIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISG 85 (202)
T ss_dssp HHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999980899999999999999999999999998279998889960666407988778998999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 88999999999995309
Q gi|254780494|r 211 SAICTMKSATFEIFQMT 227 (314)
Q Consensus 211 ~~~~~~~~~~~~Ll~~~ 227 (314)
.+..++.+++..++...
T Consensus 86 ~~~~~~~~ai~~~~~~~ 102 (202)
T 3h90_A 86 SALFLFLTGIQHLISPT 102 (202)
T ss_dssp HHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999984357
No 6
>>1uwd_A Hypothetical protein TM0487; structural genomics, unknown function, contains PAAD domain, similar to PAAD protein, unknown activity; NMR {Thermotoga maritima} (A:1-88)
Probab=86.92 E-value=1.8 Score=21.31 Aligned_cols=75 Identities=13% Similarity=0.242 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCC-C--CEEE-EEEEEEE-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 99999997157611-5--1000-1678704-6769999999988899861099999999999999865489219999985
Q gi|254780494|r 233 SQVREALYPIVIRH-G--FLDF-YTYVTKV-GRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFT 307 (314)
Q Consensus 233 ~~I~~~i~~~~~v~-~--v~~~-~i~~~~~-G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~ 307 (314)
++|.+.+..+..=+ + +-++ -++.... |. -.+.+.+.++.... ...+.+++++++++++..+...+.|+|+
T Consensus 9 ~~V~~aL~~v~DP~~~~div~lg~V~~i~v~~d-g~V~v~i~l~~~~~----~~~~~l~~~i~~~l~~l~gv~~v~V~~~ 83 (88)
T 1uwd_A 9 EDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMC----PLAGMILSDAEEAIKKIEGVNNVEVELT 83 (88)
T ss_dssp HHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTT-CEEEEEECCSSSCC----SSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCEEECCEEEEEEECCC-CCEEEEEECCCCCC----CHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 999999856889999937144360445665145-65368886378999----6289999999999973899750899999
Q ss_pred CCCCC
Q ss_conf 47655
Q gi|254780494|r 308 TQKKW 312 (314)
Q Consensus 308 ~~~~~ 312 (314)
.+|-|
T Consensus 84 ~~~pw 88 (88)
T 1uwd_A 84 FDPPW 88 (88)
T ss_dssp CSSCC
T ss_pred ECCCC
T ss_conf 63999
No 7
>>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A* (A:)
Probab=85.97 E-value=2 Score=20.97 Aligned_cols=76 Identities=11% Similarity=0.109 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCC---CCEEE-EEEE-EEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999999997157611---51000-1678-704676999999998889986109999999999999986548921999998
Q gi|254780494|r 232 DSQVREALYPIVIRH---GFLDF-YTYV-TKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314)
Q Consensus 232 ~~~I~~~i~~~~~v~---~v~~~-~i~~-~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314)
.++|++++..+..=+ ++-++ -++. .-.|... .+++.++..... ..+.+++++++++++..+.-.+.|+|
T Consensus 8 ~~~i~~aL~~V~DP~~~~~Iv~lg~V~~i~i~~~~V--~v~l~l~~~~~~----~~~~i~~~i~~~l~~l~gv~~V~V~~ 81 (103)
T 3cq1_A 8 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRA--YVRXTLTTPGCP----LHDSLGEAVRQALSRLPGVEEVEVEV 81 (103)
T ss_dssp HHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEE--EEEECCSSSSCC----SSCHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEECCCC--EEEEECCCCCCC----HHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999981688989998844457721578865835--728807999986----78999999999998189975089999
Q ss_pred ECCCCCC
Q ss_conf 5476555
Q gi|254780494|r 307 TTQKKWA 313 (314)
Q Consensus 307 ~~~~~~~ 313 (314)
+.+|.|.
T Consensus 82 ~~~~~~~ 88 (103)
T 3cq1_A 82 TFEPPWT 88 (103)
T ss_dssp CCSSCCC
T ss_pred EECCCCC
T ss_conf 9669999
No 8
>>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:59-151)
Probab=72.82 E-value=5.4 Score=18.30 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=35.8
Q ss_pred HHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEEECCC
Q ss_conf 999997157611510001678704676999999998889986109999999999999986548921-9999985476
Q gi|254780494|r 235 VREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER-WLTISFTTQK 310 (314)
Q Consensus 235 I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~-~~~i~F~~~~ 310 (314)
+.+++......+.+. +-.+..|++. .-+|+..|.++ .|++.+-++ +.++.+.+ ++.++|..|.
T Consensus 24 ~d~vi~~lkd~e~VK---iieraiG~hN-livhvi~PKDm-----ke~e~~I~e----~~kkI~~ie~~dv~fitei 87 (93)
T 2dbb_A 24 ADKVISEISDIEYVK---SVEKGVGRYN-IIVRLLLPKDI-----KDAENLISE----FLQRIKNAENVEVILISEV 87 (93)
T ss_dssp HHHHHHHHTTCTTEE---EEEEEESSCS-EEEEEEEESSH-----HHHHHHHHH----HHHTCCSEEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCE---EEEEEECCCC-EEEEEEEECCH-----HHHHHHHHH----HHHCCCCCCEEEEEEEEEE
T ss_conf 156677776526645---7899707878-99999993999-----999999999----9964999554999998302
No 9
>>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} (A:1-92)
Probab=62.87 E-value=8.7 Score=17.04 Aligned_cols=75 Identities=9% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCC-CCEE---EEEEEEEE-C-CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEE
Q ss_conf 99999997157611-5100---01678704-6-769999999988899861099999999999999865-4892199999
Q gi|254780494|r 233 SQVREALYPIVIRH-GFLD---FYTYVTKV-G-RSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGG-LGEERWLTIS 305 (314)
Q Consensus 233 ~~I~~~i~~~~~v~-~v~~---~~i~~~~~-G-~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~-~~~~~~~~i~ 305 (314)
++|++.+..+..=+ +... .-++..+. + .+..+.+.+.-+.. .....+++.+++++++ .++.-.++|+
T Consensus 11 ~~V~~aL~~V~DP~~g~div~lglV~~i~v~~~~~V~v~l~lt~p~~------~~~~~i~~~i~~al~~~l~gv~~v~V~ 84 (92)
T 3lno_A 11 NKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITXTXTSIGC------PXAGQIVSDVKKVLSTNVPEVNEIEVN 84 (92)
T ss_dssp HHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTC------TTHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred HHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCCEEEEEEEECCCCC------CHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999980888999998944558757789744997999999589997------769999999999999738997439999
Q ss_pred EECCCCCC
Q ss_conf 85476555
Q gi|254780494|r 306 FTTQKKWA 313 (314)
Q Consensus 306 F~~~~~~~ 313 (314)
++.+|-|.
T Consensus 85 ~~~~ppwt 92 (92)
T 3lno_A 85 VVWNPPWS 92 (92)
T ss_dssp ECCSSCCC
T ss_pred EEECCCCC
T ss_conf 99679999
No 10
>>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_C (c:1-94)
Probab=56.88 E-value=8.7 Score=17.05 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=49.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 99999999715761151000167870467699999999888998610999999999999998654892199999854
Q gi|254780494|r 232 DSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTT 308 (314)
Q Consensus 232 ~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~ 308 (314)
+..|++-+.......++....+ .++.....+++|..-|+-.-=..-..++.+++.+++.+++...+..+-.+.-+
T Consensus 18 D~~IR~~i~k~l~~agis~I~I--~R~~~~i~I~I~tarPg~iIG~~g~~i~~l~~~L~kev~~p~~~a~lvA~~IA 92 (94)
T 2zkq_c 18 KAELNEFLTRELAEDGYSGVEV--RVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 92 (94)
T ss_dssp HHHHHHHHHHHTCTTTEEEEEC--BEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTTTCCCCCEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 9999999999887677054999--98789389999948986140655278999999999984667862799999816
No 11
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:38-134,A:674-736,A:801-866)
Probab=44.67 E-value=17 Score=15.21 Aligned_cols=77 Identities=8% Similarity=-0.001 Sum_probs=42.0
Q ss_pred HCCCHHHHHHHHHHHHH-CCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCE---
Q ss_conf 30997899999999971-57611510001678704676999999998889986109999999999999986548921---
Q gi|254780494|r 225 QMTSPDLDSQVREALYP-IVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER--- 300 (314)
Q Consensus 225 ~~~~~~~~~~I~~~i~~-~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~--- 300 (314)
|.+|.++.+.|..-++. +.++.+++.+.......|. ..+.+.++.+.+... -..++++++.+...+.+++.
T Consensus 14 GASae~ve~~Vt~plE~al~~i~gi~~i~StS~~~G~---s~I~v~F~~~~d~d~--a~~~V~~~v~~v~~~LP~~v~~p 88 (226)
T 2v50_A 14 GASAETVQDTVVQVIEQQMNGIDNLRYISSESNSDGS---MTITVTFEQGTDPDI--AQVQVQNKLQLATPLLPQEVQRQ 88 (226)
T ss_dssp TCCHHHHHHHTHHHHHTTCCSCTTEEEEECCEETTSE---EEEEEEECSSCCHHH--HHHHHHHHHHHHGGGSCHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCE---EEEEEEEECCCCHHH--HHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999899999997289982899999717946---999999978999699--99999999999886289866778
Q ss_pred EEEEEE
Q ss_conf 999998
Q gi|254780494|r 301 WLTISF 306 (314)
Q Consensus 301 ~~~i~F 306 (314)
-+++.+
T Consensus 89 ~V~~~~ 94 (226)
T 2v50_A 89 GIRVTK 94 (226)
T ss_dssp CCEEEC
T ss_pred CCCCCC
T ss_conf 543146
No 12
>>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:15-141)
Probab=44.50 E-value=17 Score=15.19 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=28.7
Q ss_pred CEEEEEEEEEECCCCCHHHHHHH-HHHHHHHHHHHHHHCCC-EEEEEEEE
Q ss_conf 76999999998889986109999-99999999998654892-19999985
Q gi|254780494|r 260 RSRIIEIYLIVPAHYPIKRIASL-DAIRHEIGNAIGGLGEE-RWLTISFT 307 (314)
Q Consensus 260 ~~~~vev~i~v~~~~~~~~~~e~-~~i~~~i~~~l~~~~~~-~~~~i~F~ 307 (314)
+..-+|+-+.++.+.+..+..+. ..+.+++.+.+.+.+++ ..+++.|.
T Consensus 42 ~~sDiDi~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~v~~~ 91 (127)
T 1r89_A 42 GSLEIDVFLLFPEEFSKEELRERGLEIGKAVLDSYEIRYAEHPYVHGVVK 91 (127)
T ss_dssp TCCEEEEEEEECTTSCHHHHHHHHHHHHHHHSSSEEEEESSSEEEEEEET
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 97438999983899989999999999998545656632315658999983
No 13
>>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:)
Probab=44.27 E-value=17 Score=15.17 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=26.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789643752045689999999999999999999999999
Q gi|254780494|r 75 RERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISIL 113 (314)
Q Consensus 75 k~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~si~ 113 (314)
+..+..|.|-|+.+. +++|+++.+++.+++.++...=-
T Consensus 4 ~~e~dpF~YDy~tLR-igGLi~a~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQ-LGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp TSTTSGGGGGGHHHH-HHHHHHHHHHHHHHHHHHHTTHH
T ss_pred CCCCCCCCCCHHHHH-CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 556898614438863-00049999999999999984753
No 14
>>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} (A:)
Probab=44.24 E-value=18 Score=15.17 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 999999999715761151000167870467699999999888998610999999999999998654892199999854
Q gi|254780494|r 231 LDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTT 308 (314)
Q Consensus 231 ~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~ 308 (314)
.+..|++-+......-++....+ .++.....+++|..-|.-.-=..-...+.+++.+++.+++..-+..+-.++-+
T Consensus 8 ed~~Ir~~l~k~~~~aGis~IeI--~Rt~~~i~I~I~t~kPg~iIG~~g~~i~~l~~~l~kev~~P~~~a~liA~~IA 83 (92)
T 1wh9_A 8 FKAELNEFLTRELAEDGYSGVEV--RVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVA 83 (92)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEE--EECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 89999999999887678355999--98799189999968986165247530999999999996899970899987430
No 15
>>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:)
Probab=43.42 E-value=18 Score=15.09 Aligned_cols=37 Identities=11% Similarity=0.362 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03789643752045689999999999999999999999
Q gi|254780494|r 73 DYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLI 110 (314)
Q Consensus 73 ~~k~~~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~ 110 (314)
...+.+..|.|-|+.+. +++|+.+.+++.+++.++..
T Consensus 4 ~~~~e~dpF~YDy~tLR-igGLi~A~vLfi~GI~iilS 40 (74)
T 2zxe_G 4 EGPDNDERFTYDYYRLR-VVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp CCTTCGGGGCCCHHHHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_conf 77776898514448875-20069999999999999993
No 16
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:38-134,A:674-721,A:814-867)
Probab=37.44 E-value=22 Score=14.52 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=36.3
Q ss_pred HCCCHHHHHHHHHHHH-HCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3099789999999997-1576115100016787046769999999988899861099999999999999865489
Q gi|254780494|r 225 QMTSPDLDSQVREALY-PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 225 ~~~~~~~~~~I~~~i~-~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
|.+|.++.+.|..-++ ++.++.+++..+......| ...+.+.++.+.++.. ...++++++.+...+.++
T Consensus 14 Gasp~~vE~~Vt~piE~~l~~i~gi~~i~St~s~~G---~s~I~v~f~~~~d~~~--a~~~v~~~i~~i~~~LP~ 83 (199)
T 2j8s_A 14 GADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTG---TVQITLTFESGTDADI--AQVQVQNKLQLAMPLLPQ 83 (199)
T ss_dssp TCCHHHHHHHTHHHHHHTCCSCTTEEEEEEEEETTS---EEEEEEEECTTCCHHH--HHHHHHHHHHHHGGGSCH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCE---EEEEEEEEECCCCHHH--HHHHHHHHHHHHHHHCCC
T ss_conf 999999999998999999728998189999975987---9999999938999799--999999999988862897
No 17
>>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} (A:)
Probab=34.45 E-value=25 Score=14.22 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=25.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEEEECC
Q ss_conf 999999888998610999999999999998654892--1999998547
Q gi|254780494|r 264 IEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEE--RWLTISFTTQ 309 (314)
Q Consensus 264 vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~--~~~~i~F~~~ 309 (314)
||+.+.=...+|... .+.+++|+.++++..||+ .++.|.+...
T Consensus 3 VEi~~dK~~~lp~ga---~~aL~~EL~kRi~~~yPd~~~~v~Vr~~s~ 47 (81)
T 1ghh_A 3 IEVTIAKTSPLPAGA---IDALAGELSRRIQYAFPDNEGHVSVRYAAA 47 (81)
T ss_dssp EEEEEETTSCCCTTH---HHHHHHHHHHHHHHHCSSSCCEEEEEEESS
T ss_pred EEEEEECCCCCCCCH---HHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 688760357786006---999999999999876888644355522345
No 18
>>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A (A:)
Probab=33.64 E-value=26 Score=14.14 Aligned_cols=40 Identities=10% Similarity=-0.129 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1357999999998301344420467998999999999999
Q gi|254780494|r 171 LLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILP 210 (314)
Q Consensus 171 s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~ 210 (314)
|-+-..|..+.......|...|.+|+=|+.+-+++.++..
T Consensus 245 NPAr~lgp~~~~~~~~~~~~~wvywv~P~~Ga~~a~~~y~ 284 (304)
T 3cn5_A 245 NPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQ 284 (304)
T ss_dssp CHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 8244207777605788755433010288899999999999
No 19
>>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex, designed ankyrin repeat protein, multidrug resistance protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB: 2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A 2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ... (A:135-181,A:275-329,A:568-673)
Probab=33.08 E-value=26 Score=14.08 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEE---EEECCEEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999997157611510001678---70467699999999888998-61099999999999999865489
Q gi|254780494|r 233 SQVREALYPIVIRHGFLDFYTYV---TKVGRSRIIEIYLIVPAHYP-IKRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 233 ~~I~~~i~~~~~v~~v~~~~i~~---~~~G~~~~vev~i~v~~~~~-~~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
+++++.+.+.+++..+...--.. ...|+ ...++.+.+.+-.. -..-...+++.+++++++++.+.
T Consensus 127 ~~ie~~l~~~~~v~~~~~~~G~~~~~~~~~~-n~g~~~i~L~~~~eR~~~~~s~~ei~~~lr~~l~~ipg 195 (208)
T 2j8s_A 127 NEVTHYYLTKEKNNVESVFAVNGFGFAGRGQ-NTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKD 195 (208)
T ss_dssp HHHHHHHHHTTTTTEEEEEEEETCCSSCCCT-TEEEEEEEECCGGGSCSSTTSHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCCCCCC-CCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999987402688605899740456688787-44048997133554113466899999999876430354
No 20
>>2w8a_A Glycine betaine transporter BETP; chemosensor and osmosensor, trimer, membrane, cell membrane, membrane protein; 3.35A {Corynebacterium glutamicum} PDB: 2wit_A (A:)
Probab=30.38 E-value=29 Score=13.81 Aligned_cols=17 Identities=12% Similarity=-0.238 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 52045689999999999
Q gi|254780494|r 82 QFGFWHFEPMVLAFNSV 98 (314)
Q Consensus 82 p~G~~r~E~l~~l~~~~ 98 (314)
+.|+-.-|.+...+.+-
T Consensus 360 SrGRTiRe~il~~l~~p 376 (566)
T 2w8a_A 360 SRGRSIREFILGVLLVP 376 (566)
T ss_dssp TTTCCHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHH
T ss_conf 73556988899998999
No 21
>>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Bacillus stearothermophilus} (A:81-116,A:249-318)
Probab=28.36 E-value=32 Score=13.59 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=37.2
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEE-EEEEE------------ECCCCCCC
Q ss_conf 69999999988899861099999999999999865489219-99998------------54765559
Q gi|254780494|r 261 SRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERW-LTISF------------TTQKKWAI 314 (314)
Q Consensus 261 ~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~-~~i~F------------~~~~~~~~ 314 (314)
.+.+|..+.++......+.+++.+..+++++.-...++++. +-+.. ..-|+|||
T Consensus 28 ~~~~E~KiD~~~~~~~~~~~ei~~~~~~~~~~R~~l~y~iDGiViKvnd~~~~~~lG~T~k~PRWaI 94 (106)
T 1b04_A 28 AYVCELAIDNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAI 94 (106)
T ss_dssp CEEEEEEESCTTCEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEE
T ss_pred CEEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCCCCCCCEE
T ss_conf 4056665432205885899999999999997654199888638999748899997198579988558
No 22
>>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 2qal_C* 1p6g_C 1p87_C 2aw7_C 2avy_C 2i2u_C 2i2p_C* 2qan_C* 2qb9_C* 2qbb_C* 2qbd_C ... (C:1-109)
Probab=26.76 E-value=34 Score=13.42 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 99999999715761151000167870467699999999888998610999999999999998654892199999854
Q gi|254780494|r 232 DSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTT 308 (314)
Q Consensus 232 ~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~ 308 (314)
|..|++-+.+.....++.. +...++.....+.+|..-|+-.--..-++++.+++++++.+.+ ++.++|.=..
T Consensus 36 D~~IR~~i~k~~~~agis~--IeI~R~~~~i~I~I~~~rPg~iIG~~g~~i~~l~~~l~k~~~~---~~~i~v~evk 107 (109)
T 3i1m_C 36 DFKVRQYLTKELAKASVSR--IVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGV---PAQINIAEVR 107 (109)
T ss_dssp HHHHHHHHHHHTGGGTEEE--EEBCCCSSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTS---CBCCEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCE--EEEECCCCCEEEEEEECCCCHHCCCCHHHHHHHHHHHHHHCCC---CEEEEEEEEC
T ss_conf 9999999999865512210--4540266536999996244121153057799999887764276---3269999723
No 23
>>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A (A:867-1034)
Probab=25.75 E-value=35 Score=13.30 Aligned_cols=10 Identities=20% Similarity=0.036 Sum_probs=4.4
Q ss_pred HHHHHHHHCC
Q ss_conf 9999985147
Q gi|254780494|r 109 LISILNIISG 118 (314)
Q Consensus 109 ~~si~~l~~~ 118 (314)
....+++.+-
T Consensus 116 ip~l~~~f~~ 125 (168)
T 3ixz_A 116 CPGMPNIFNF 125 (168)
T ss_pred HHHHHHHHEE
T ss_conf 9788887576
No 24
>>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01} (A:135-180,A:275-329,A:567-673)
Probab=25.30 E-value=36 Score=13.25 Aligned_cols=66 Identities=9% Similarity=-0.083 Sum_probs=30.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEEE---EECCEEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999971576115100016787---0467699999999888998-61099999999999999865489
Q gi|254780494|r 232 DSQVREALYPIVIRHGFLDFYTYVT---KVGRSRIIEIYLIVPAHYP-IKRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 232 ~~~I~~~i~~~~~v~~v~~~~i~~~---~~G~~~~vev~i~v~~~~~-~~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
.+++++.+.+.+++..+...--... ..|+ ...++.+.+.+-.. ..+-...+++.+++++++.+.+.
T Consensus 126 ~~~ie~~l~~~p~v~~~~~~~G~~~~~~~~~~-n~~~~~v~L~~~~~R~~~~~s~~~i~~~lr~~l~~ipg 195 (208)
T 2v50_A 126 VDSMREYLLEKESSSVSSVFTVTGFNFAGRGQ-SSGMAFIMLKPWEERPGGENSVFELAKRAQMHFFSFKD 195 (208)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEEESCCSSCCST-TEEEEEEEECCTTSCCSSTTSHHHHHHHHHHHSSSCSS
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC-CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998762376642799831544467788-86300242024311565114678789999875302666
No 25
>>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} (A:182-286)
Probab=22.16 E-value=41 Score=12.87 Aligned_cols=81 Identities=9% Similarity=0.013 Sum_probs=53.3
Q ss_pred CHH-HHHHHHHHHHHCCCCCCCEEEEEEEEEEC-CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEE
Q ss_conf 978-99999999971576115100016787046-7699999999888998610999999999999998654892---199
Q gi|254780494|r 228 SPD-LDSQVREALYPIVIRHGFLDFYTYVTKVG-RSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEE---RWL 302 (314)
Q Consensus 228 ~~~-~~~~I~~~i~~~~~v~~v~~~~i~~~~~G-~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~---~~~ 302 (314)
+++ ..+-+++++.+.+++..-....++....+ ..+.+++...+.+.. ...--+++.++|.+++++..-+ ..-
T Consensus 16 d~~~v~~il~~~~~~~~~vl~~p~p~v~v~~~~~~~v~~~i~~~v~~~~---~~~~~~~l~~~I~~~l~~~gI~~p~p~~ 92 (105)
T 2vv5_A 16 DIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGD---LQNVYWDVLERIKREFDAAGISFPYPQM 92 (105)
T ss_dssp CHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTT---HHHHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEEECCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 4777655530233333222467773688623368648999999987278---9999999999999999988980779968
Q ss_pred EEEEECCCC
Q ss_conf 999854765
Q gi|254780494|r 303 TISFTTQKK 311 (314)
Q Consensus 303 ~i~F~~~~~ 311 (314)
++++...+.
T Consensus 93 ~v~~~~~~~ 101 (105)
T 2vv5_A 93 DVNFKRVKE 101 (105)
T ss_dssp EEEEECC--
T ss_pred EEEECCCCC
T ss_conf 999712888
No 26
>>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:)
Probab=21.84 E-value=42 Score=12.83 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6437520456899999999999999999999999998
Q gi|254780494|r 78 ERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILN 114 (314)
Q Consensus 78 ~~~~p~G~~r~E~l~~l~~~~~l~~~~~~i~~~si~~ 114 (314)
+..|.|-|+.+. +++|+++.+++.+++.++...=-+
T Consensus 6 ~dpF~YDY~tLR-igGLi~A~vLfi~GI~iilS~kcr 41 (72)
T 2jo1_A 6 HDPFTYDYQSLQ-IGGLVIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HSGGGCSTHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-CCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 698635458875-022378999999999999836565
No 27
>>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} (A:)
Probab=21.21 E-value=43 Score=12.75 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=14.4
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 9999986548921999998547655
Q gi|254780494|r 288 EIGNAIGGLGEERWLTISFTTQKKW 312 (314)
Q Consensus 288 ~i~~~l~~~~~~~~~~i~F~~~~~~ 312 (314)
++++-|...+--.|.+++-|+=.+|
T Consensus 63 eL~~iL~~LPL~~~m~ieVtpL~~h 87 (96)
T 1mli_A 63 ALHDTLMQLPLFPYMDIEVDGLCRH 87 (96)
T ss_pred HHHHHHHCCCCCCCCCCEEEECCCC
T ss_conf 9999997199964224477773569
Done!