Query gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 314
No_of_seqs 131 out of 2011
Neff 8.3
Searched_HMMs 13730
Date Wed Jun 1 10:14:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780494.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qfia2 f.59.1.1 (A:5-208) Fer 100.0 4.1E-41 2.8E-45 269.2 -35.9 202 9-226 3-204 (204)
2 d3bypa1 d.52.9.1 (A:6-87) Puta 99.2 1.8E-10 1.3E-14 80.4 11.9 78 226-308 1-80 (82)
3 d2qfia1 d.52.9.1 (A:209-290) F 98.8 4.3E-11 3.1E-15 84.3 -3.0 78 227-309 2-79 (82)
4 d2cu6a1 d.52.8.2 (A:6-96) Hypo 87.0 0.72 5.2E-05 21.3 6.1 76 232-313 3-83 (91)
5 d1uwda_ d.52.8.2 (A:) Hypothet 86.9 0.72 5.2E-05 21.3 5.6 32 282-313 57-88 (102)
6 d2qfia2 f.59.1.1 (A:5-208) Fer 74.7 0.00091 6.6E-08 39.2 -12.8 97 132-228 10-106 (204)
7 d1wh9a_ d.52.3.1 (A:) Ribosoma 53.1 5.2 0.00038 16.0 4.9 79 229-310 6-85 (92)
8 d1iwga1 d.58.44.1 (A:38-134) M 46.0 5.4 0.0004 15.9 2.2 69 225-298 14-83 (97)
9 d2vv5a2 d.58.43.1 (A:180-280) 41.1 8 0.00058 14.9 10.9 78 227-307 17-99 (101)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 30.9 12 0.00084 13.9 4.2 27 83-109 57-83 (91)
11 d1ghha_ d.57.1.1 (A:) DNA dama 25.1 15 0.0011 13.2 6.5 26 282-307 18-45 (81)
12 d1mlia_ d.58.4.1 (A:) Muconala 24.9 15 0.0011 13.2 5.8 46 251-311 41-86 (96)
No 1
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=4.1e-41 Score=269.21 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCHHHH
Q ss_conf 99889999999999999999999999983799999999999999999999999999820000120378964375204568
Q gi|254780494|r 9 KSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHF 88 (314)
Q Consensus 9 ~~e~~~L~~sl~~~~~~a~~~~~~g~~sgS~allada~~sl~D~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~p~G~~r~ 88 (314)
|.+||++++++..|+.+++.|+++|+++||+++++||+||+.|++++++++++.+. ++||||++|||||+|+
T Consensus 3 r~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~--------s~k~~d~~~pyG~~r~ 74 (204)
T d2qfia2 3 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRY--------SLQPADDNHSFGHGKA 74 (204)
T ss_dssp SSSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTT--------SSSSCSTTSSCSCCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCCCCCCCHHHH
T ss_conf 99999999999999999999999999955299999999999999999999999876--------0799986688642678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998514798765117999999999986688998764103577799999998757887
Q gi|254780494|r 89 EPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAG 168 (314)
Q Consensus 89 E~l~~l~~~~~l~~~~~~i~~~si~~l~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~ 168 (314)
|++++++++++++++++++++|+++++.+|+++.+...++++.+++.+.+..++++.++.+|+.+|+.++++++|++.|.
T Consensus 75 E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~ 154 (204)
T d2qfia2 75 ESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDV 154 (204)
T ss_dssp HHHHHHTTTTTTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 79999998999999999999999999972011346099999999999999999999887220021452699999999789
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4213579999999983013444204679989999999999998899999999999530
Q gi|254780494|r 169 YLLLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQM 226 (314)
Q Consensus 169 ~~s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~~~~~~~~~~~~~Ll~~ 226 (314)
+.|.++++++++.++ +.+|+||++++++++++++.+++++||+.++|+|.
T Consensus 155 ~~s~~vii~~~~~~~--------~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~ 204 (204)
T d2qfia2 155 MMNGAILLALGLSWY--------GWHRADALFALGIGIYILYSALRMGYEAVQSLLDR 204 (204)
T ss_dssp CCSSTTCCCTTSSCS--------STTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred HHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 987999999999993--------84032699999999999999999999999987294
No 2
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=99.19 E-value=1.8e-10 Score=80.43 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCC--CCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 099789999999997157611--510001678704676999999998889986109999999999999986548921999
Q gi|254780494|r 226 MTSPDLDSQVREALYPIVIRH--GFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLT 303 (314)
Q Consensus 226 ~~~~~~~~~I~~~i~~~~~v~--~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~ 303 (314)
+.|||..++|++++++.+++. ++|+ +|++++|+++++|+|+.||+++ ++.++|++.+++++++++.+|..+++
T Consensus 1 glp~e~~~~I~~~i~~~~~~~vv~vh~--lr~r~~G~~~~vd~hi~v~~~~---sv~~aH~i~~~ve~~i~~~~~~~~v~ 75 (82)
T d3bypa1 1 GLPPEEVERIRAFLQERIRGRALEVHD--LKTRRAGPRSFLEFHLVVRGDT---PVEEAHRLCDELERALAQAFPGLQAT 75 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTCSEEEE--EEEEEETTEEEEEEEEEECTTC---BHHHHHHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEE--EEEEEECCEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 929899999999999589978030168--8756988989999999989899---89999999999999999658997799
Q ss_pred EEEEC
Q ss_conf 99854
Q gi|254780494|r 304 ISFTT 308 (314)
Q Consensus 304 i~F~~ 308 (314)
+|.++
T Consensus 76 vHveP 80 (82)
T d3bypa1 76 IHVEP 80 (82)
T ss_dssp EEEEE
T ss_pred EEECC
T ss_conf 99588
No 3
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=98.83 E-value=4.3e-11 Score=84.29 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 99789999999997157611510001678704676999999998889986109999999999999986548921999998
Q gi|254780494|r 227 TSPDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314)
Q Consensus 227 ~~~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314)
.|++..++|++++.+++++.++|+++. +++|+.+++|+|++||+++ ++++.|++.++++++|++.+|..+++||.
T Consensus 2 lP~e~~~~I~~~i~~~~gV~~vh~lr~--r~~G~~~~vd~hi~v~~~~---sv~~aH~I~~~ie~~l~~~~~~~~v~iHv 76 (82)
T d2qfia1 2 LPDEERQEIIDIVTSWPGVSGAHDLRT--RQSGPTRFIQIHLEMEDSL---PLVQAHMVADQVEQAILRRFPGSDVIIHQ 76 (82)
T ss_dssp CCTTHHHHHHHHHTTSSSCSCBCCCCC--CTTSCCBCCBSCTTSTTTC---SCGGGHHHHHHHHHHTTSSSCCSSCBCCC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEEE--EEECCCEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 298999999999971999234548999--9968909999999989999---99999999999999999768997799980
Q ss_pred ECC
Q ss_conf 547
Q gi|254780494|r 307 TTQ 309 (314)
Q Consensus 307 ~~~ 309 (314)
++.
T Consensus 77 eP~ 79 (82)
T d2qfia1 77 DPC 79 (82)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 776
No 4
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=87.01 E-value=0.72 Score=21.31 Aligned_cols=76 Identities=14% Similarity=0.262 Sum_probs=43.1
Q ss_pred HHHHHHHHHHCCCCC---CCEEE-EEEEEE-ECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999999997157611---51000-167870-4676999999998889986109999999999999986548921999998
Q gi|254780494|r 232 DSQVREALYPIVIRH---GFLDF-YTYVTK-VGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISF 306 (314)
Q Consensus 232 ~~~I~~~i~~~~~v~---~v~~~-~i~~~~-~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F 306 (314)
.+++.+++.++..=+ ++-++ -++... .|.+..+.+.+.-+.. |. .+.+++++++++++..+.-.+.|++
T Consensus 3 e~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~~~~v~v~l~lt~~~c-p~-----~~~i~~~i~~al~~l~gv~~V~V~~ 76 (91)
T d2cu6a1 3 EAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGC-PL-----HDSLGEAVRQALSRLPGVEEVEVEV 76 (91)
T ss_dssp HHHHHHHHTTCEETTTTEETTTTTCEEEEEEETTEEEEEECCSSSSC-CS-----SCHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred HHHHHHHHHCCCCCCCCCCHHHCCCEEEEEEECCCCEEEEECCCCCC-CH-----HHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999998368899999684214550378994264189997488897-47-----9999999999998089973289999
Q ss_pred ECCCCCC
Q ss_conf 5476555
Q gi|254780494|r 307 TTQKKWA 313 (314)
Q Consensus 307 ~~~~~~~ 313 (314)
|.+|.|.
T Consensus 77 ~~~p~W~ 83 (91)
T d2cu6a1 77 TFEPPWT 83 (91)
T ss_dssp CCSSCCC
T ss_pred EECCCCC
T ss_conf 9659988
No 5
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=86.91 E-value=0.72 Score=21.30 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
Q ss_conf 99999999999865489219999985476555
Q gi|254780494|r 282 LDAIRHEIGNAIGGLGEERWLTISFTTQKKWA 313 (314)
Q Consensus 282 ~~~i~~~i~~~l~~~~~~~~~~i~F~~~~~~~ 313 (314)
.+.+++++++++++..+...++|+++.+|.|.
T Consensus 57 ~~~i~~~i~~al~~~~gV~~v~V~i~~~p~W~ 88 (102)
T d1uwda_ 57 AGMILSDAEEAIKKIEGVNNVEVELTFDPPWT 88 (102)
T ss_dssp HHHHHHHHHHHHHTSSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
T ss_conf 79999999999982899760899999629999
No 6
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=74.72 E-value=0.00091 Score=39.15 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999866889987641035777999999987578874213579999999983013444204679989999999999998
Q gi|254780494|r 132 CVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDSAYDWIIPYVDSMVLMFICLFILPS 211 (314)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~s~~l~~~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~~~~~~~D~i~alii~l~ii~~ 211 (314)
.++.++|..+...+.-.+--.+|..+.+|+.|...|.+.+..+..+.-.+.-.+...+.++..-..++++++.+++++..
T Consensus 10 ~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~ 89 (204)
T d2qfia2 10 IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGS 89 (204)
T ss_dssp HHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTTTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999552999999999999999999999998760799986688642678799999989999999
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999999953099
Q gi|254780494|r 212 AICTMKSATFEIFQMTS 228 (314)
Q Consensus 212 ~~~~~~~~~~~Ll~~~~ 228 (314)
++.++.+++..+....+
T Consensus 90 ~~~~~~~si~~l~~~~~ 106 (204)
T d2qfia2 90 ALFLFLTGIQHLISPTP 106 (204)
T ss_dssp TTGGGSSCTTSSTTTSS
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999972011
No 7
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.10 E-value=5.2 Score=16.02 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 789999999997157611510001678704676999999998889986-1099999999999999865489219999985
Q gi|254780494|r 229 PDLDSQVREALYPIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPI-KRIASLDAIRHEIGNAIGGLGEERWLTISFT 307 (314)
Q Consensus 229 ~~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~-~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~ 307 (314)
.++..+|++-+..-....++....+ .++.....+.+|..=|.- -+ +.-++++.+++.+++.+.-..+++.+.++-.
T Consensus 6 ~~f~a~Ire~l~k~l~~Agis~ieI--~Rt~~~i~I~I~tarPGi-vIGrkG~~I~~L~~~l~k~~~~~~~~i~lnae~I 82 (92)
T d1wh9a_ 6 SGFKAELNEFLTRELAEDGYSGVEV--RVTPTRTEIIILATRTQN-VLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKV 82 (92)
T ss_dssp CSHHHHHHHHHHHHTTTTTEEEEEE--EECSSCEEEEEEESCHHH-HHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE--EECCCEEEEEEEECCCCE-EECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 5289999999999887687355999--987990899999689860-5222754399999999999789997289998700
Q ss_pred CCC
Q ss_conf 476
Q gi|254780494|r 308 TQK 310 (314)
Q Consensus 308 ~~~ 310 (314)
.++
T Consensus 83 a~r 85 (92)
T d1wh9a_ 83 ATR 85 (92)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 026
No 8
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=45.97 E-value=5.4 Score=15.89 Aligned_cols=69 Identities=9% Similarity=0.085 Sum_probs=30.1
Q ss_pred HCCCHHHHHHHHHHHH-HCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3099789999999997-1576115100016787046769999999988899861099999999999999865489
Q gi|254780494|r 225 QMTSPDLDSQVREALY-PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGE 298 (314)
Q Consensus 225 ~~~~~~~~~~I~~~i~-~~~~v~~v~~~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~ 298 (314)
|++|.++.+.|.+-++ ++.++.+++.++...+..|. ..+.+.++.+.+... ...++++++.+...+.++
T Consensus 14 Gaspe~ve~~Vt~plE~~l~~v~gi~~i~S~S~~~G~---~~i~v~f~~~~d~~~--a~~~v~~~v~~~~~~LP~ 83 (97)
T d1iwga1 14 GADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGT---VQITLTFESGTDADI--AQVQVQNKLQLAMPLLPQ 83 (97)
T ss_dssp TCCHHHHHTTTHHHHHHHCCCCSSCCEEEEEEETTTE---EEEEEECCTTCCHHH--HHHHHTTSGGGTGGGSCH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC---EEEEEEEECCCCHHH--HHHHHHHHHHHHHHCCCC
T ss_conf 9999999999969999997389991799999826894---899999947989899--999999999999860996
No 9
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.09 E-value=8 Score=14.87 Aligned_cols=78 Identities=6% Similarity=-0.002 Sum_probs=52.3
Q ss_pred CCH-HHHHHHHHHHHHCCCCCCCEEEEEEEEEEC-CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC---CCEE
Q ss_conf 997-899999999971576115100016787046-76999999998889986109999999999999986548---9219
Q gi|254780494|r 227 TSP-DLDSQVREALYPIVIRHGFLDFYTYVTKVG-RSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLG---EERW 301 (314)
Q Consensus 227 ~~~-~~~~~I~~~i~~~~~v~~v~~~~i~~~~~G-~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~---~~~~ 301 (314)
+++ ...+-+.+++.+.+.+..-....++....| ..+..++..-+++. . -....+++..++.+++++.. |-.+
T Consensus 17 ~d~~~v~~il~~~~~~~~~v~~~p~p~v~~~~~~~s~i~~~v~~w~~~~-~--~~~~~~~l~~~I~~~l~~~gI~ip~P~ 93 (101)
T d2vv5a2 17 SDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSG-D--LQNVYWDVLERIKREFDAAGISFPYPQ 93 (101)
T ss_dssp SCHHHHHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETT-T--HHHHHHHHHHHHHHHHHHHTCCCCCCE
T ss_pred CCHHHHHHHHHHHHHHCHHHHCCCCCHHHCCCCCCCEEEEEEEEEECCH-H--HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9899999999999984833303567411102589844899999983526-9--999999999999999998697178886
Q ss_pred EEEEEE
Q ss_conf 999985
Q gi|254780494|r 302 LTISFT 307 (314)
Q Consensus 302 ~~i~F~ 307 (314)
-+|++.
T Consensus 94 ~~v~~~ 99 (101)
T d2vv5a2 94 MDVNFK 99 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 799986
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=30.92 E-value=12 Score=13.86 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 204568999999999999999999999
Q gi|254780494|r 83 FGFWHFEPMVLAFNSVILICVALYEFL 109 (314)
Q Consensus 83 ~G~~r~E~l~~l~~~~~l~~~~~~i~~ 109 (314)
-|-.++|.+...+-.++++++++....
T Consensus 57 ~~n~~lEi~WtiIP~iil~~iav~s~~ 83 (91)
T d1fftb2 57 SHSNKVEAVVWTVPILIIIFLAVLTWK 83 (91)
T ss_dssp CCCSHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 679641146899899999999999998
No 11
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=25.12 E-value=15 Score=13.23 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHCCC--EEEEEEEE
Q ss_conf 999999999998654892--19999985
Q gi|254780494|r 282 LDAIRHEIGNAIGGLGEE--RWLTISFT 307 (314)
Q Consensus 282 ~~~i~~~i~~~l~~~~~~--~~~~i~F~ 307 (314)
.+.+++|+.++++..||+ .++.|.+.
T Consensus 18 ~~aL~~EL~kRl~~~fpD~~~~v~Vr~~ 45 (81)
T d1ghha_ 18 IDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9999999999887358997540798655
No 12
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=24.92 E-value=15 Score=13.21 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=22.3
Q ss_pred EEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 0167870467699999999888998610999999999999998654892199999854765
Q gi|254780494|r 251 FYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEERWLTISFTTQKK 311 (314)
Q Consensus 251 ~~i~~~~~G~~~~vev~i~v~~~~~~~~~~e~~~i~~~i~~~l~~~~~~~~~~i~F~~~~~ 311 (314)
.++|-. .|+...+.+- .++ +.+| +++.|...+--.|.+|+-|+=-+
T Consensus 41 ~~LWRv-~G~~~nisIf-dv~------s~de-------Lh~iL~~LPL~p~m~ieVtpL~~ 86 (96)
T d1mlia_ 41 RHLWRI-AGHYANYSVF-DVP------SVEA-------LHDTLMQLPLFPYMDIEVDGLCR 86 (96)
T ss_pred EEEEEE-CCCCEEEEEE-ECC------CHHH-------HHHHHHCCCCCCCCCCEEEECCC
T ss_conf 799996-4774278999-769------8799-------99999719996411446777466
Done!