RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62] (314 letters) >d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204 Score = 58.6 bits (141), Expect = 6e-10 Identities = 37/216 (17%), Positives = 79/216 (36%), Gaps = 16/216 (7%) Query: 8 SKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKLIAR 67 + + M + + + T S SI+ S ++ G + +LLV + Sbjct: 2 GRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYS-- 59 Query: 68 DVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKA 127 + + FG E + S+ + AL+ FL I ++IS + Sbjct: 60 ------LQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVG 113 Query: 128 VIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLCAMLLRDS 187 VI + VA +++ ++ R +S + D + + A+++A + Sbjct: 114 VIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW----- 168 Query: 188 AYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEI 223 + D++ + I ++IL SA+ A + Sbjct: 169 ---YGWHRADALFALGIGIYILYSALRMGYEAVQSL 201 >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 Score = 26.2 bits (58), Expect = 3.8 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 21/81 (25%) Query: 98 VILICVALYEFLISILNIISGGHDINFEKAVIYSCVASF-------ICLM---------- 140 + I V E ++ + ++ G I K +Y+ + L Sbjct: 133 IKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLDVGTDNETLLK 192 Query: 141 ----MGVYENRCNREIKSDFI 157 +G+ R + D + Sbjct: 193 DPLYIGLRHKRIRGQAYDDLL 213 >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} Length = 388 Score = 25.5 bits (55), Expect = 6.2 Identities = 6/12 (50%), Positives = 8/12 (66%) Query: 240 YPIVIRHGFLDF 251 PIV+ HGF + Sbjct: 8 APIVLLHGFTGW 19 >d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]} Length = 228 Score = 24.9 bits (54), Expect = 8.7 Identities = 11/102 (10%), Positives = 29/102 (28%), Gaps = 9/102 (8%) Query: 68 DVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGHDINFEKA 127 +V ++ E + +LI + + + ++ F + Sbjct: 108 HYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVE---DIIDTGKTLVK------FCEY 158 Query: 128 VIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGY 169 + + + + + K+DF+ V GY Sbjct: 159 LKKFEIKTVAIACLFIKRTPLWNGFKADFVGFSIPDHFVVGY 200 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.330 0.141 0.428 Gapped Lambda K H 0.267 0.0659 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,195,632 Number of extensions: 56488 Number of successful extensions: 165 Number of sequences better than 10.0: 1 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 11 Length of query: 314 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 229 Effective length of database: 1,240,546 Effective search space: 284085034 Effective search space used: 284085034 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 53 (24.3 bits)