BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62] (314 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative [Candidatus Liberibacter asiaticus str. psy62] Length = 314 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MQNYKARSKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLL 60 MQNYKARSKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLL Sbjct: 1 MQNYKARSKSEESLLKLSICMTIFMASVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLL 60 Query: 61 VAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGH 120 VAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGH Sbjct: 61 VAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVALYEFLISILNIISGGH 120 Query: 121 DINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLC 180 DINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLC Sbjct: 121 DINFEKAVIYSCVASFICLMMGVYENRCNREIKSDFIALDAKSWIVAGYLLLAVVIAFLC 180 Query: 181 AMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSPDLDSQVREALY 240 AMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSPDLDSQVREALY Sbjct: 181 AMLLRDSAYDWIIPYVDSMVLMFICLFILPSAICTMKSATFEIFQMTSPDLDSQVREALY 240 Query: 241 PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER 300 PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER Sbjct: 241 PIVIRHGFLDFYTYVTKVGRSRIIEIYLIVPAHYPIKRIASLDAIRHEIGNAIGGLGEER 300 Query: 301 WLTISFTTQKKWAI 314 WLTISFTTQKKWAI Sbjct: 301 WLTISFTTQKKWAI 314 >gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 395 Score = 25.8 bits (55), Expect = 0.94, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 27 SVNLIIGTITNSSSIVFDGFYSYLEAGMTALSLLVAKL 64 S N+ I N SS+ + F Y +AG+ +SL V L Sbjct: 103 SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSL 140 >gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 45 GFYSYLEAGMTALSLLVAKLIARDVSKVDYRERERYFQFGFWHFEPMVLAFNSVILICVA 104 GF S L G+ ++ ++ +I+ K YR + FG E + +++ +A Sbjct: 35 GFISLLSDGLESIVNIITAIISYFTLKYAYRPADNTHPFGHQKAEYIAAVVEGLLMTNIA 94 Query: 105 L 105 L Sbjct: 95 L 95 >gi|254781124|ref|YP_003065537.1| hypothetical protein CLIBASIA_05130 [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 23.5 bits (49), Expect = 4.7, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 137 ICLMMGVYENRCNREIKSD 155 IC ++ + ENR N + K+D Sbjct: 65 ICALIKLLENRSNHQTKND 83 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.141 0.428 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 186,442 Number of Sequences: 1233 Number of extensions: 6974 Number of successful extensions: 30 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 8 length of query: 314 length of database: 328,796 effective HSP length: 74 effective length of query: 240 effective length of database: 237,554 effective search space: 57012960 effective search space used: 57012960 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 38 (19.2 bits)