RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780495|ref|YP_003064908.1| superoxide dismutase
[Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>gnl|CDD|30950 COG0605, SodA, Superoxide dismutase [Inorganic ion transport and
metabolism].
Length = 204
Score = 236 bits (603), Expect = 4e-63
Identities = 100/202 (49%), Positives = 132/202 (65%), Gaps = 4/202 (1%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEML--HLSLEEIII 58
M ++LP LPY+YD L P++S ET+E HHD HH+ Y +N LSLEEII
Sbjct: 2 MAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIK 61
Query: 59 KSHGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITA 118
K G A LFNNA ++NH+LFW + G GK L+ AI+ +FGSF+KFK + A
Sbjct: 62 KLAGLPAALFNNAGGHWNHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAA 121
Query: 119 ASTQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHY 177
A++ FGSGW WL +GKLEI T N + PL+ G++P+LG+DVWEHAYYLD+ RR Y
Sbjct: 122 AASVFGSGWAWLVYDPDGKLEIVSTYNQDTPLMWGSVPLLGLDVWEHAYYLDYGNRRPDY 181
Query: 178 IESFITNLVNWEYVCERYETAM 199
+E+F N+VNW+ V ER+E A
Sbjct: 182 VEAFW-NVVNWDEVEERFEAAK 202
>gnl|CDD|36094 KOG0876, KOG0876, KOG0876, Manganese superoxide dismutase
[Inorganic ion transport and metabolism].
Length = 234
Score = 186 bits (473), Expect = 4e-48
Identities = 84/203 (41%), Positives = 113/203 (55%), Gaps = 8/203 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSH- 61
LP+LPY YD L P +S E +E H D HH+ Y +N K L+ L + +
Sbjct: 28 ATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSLTAI 87
Query: 62 -GSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
A FN A YNH+ FW + G +AL AID +FGS E+F +L AA+
Sbjct: 88 APQPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAA 147
Query: 121 TQFGSGWGWL--SVKNGKLEISKTQNAENPLI---NGAIPILGIDVWEHAYYLDFKYRRA 175
FGSGW WL + + KL I T NA +PL+ +P+LGIDVWEHAYYLD+ RA
Sbjct: 148 AVFGSGWLWLVYNKELKKLFILTTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRA 207
Query: 176 HYIESFITNLVNWEYVCERYETA 198
YI++ +++NW+ V ER+E A
Sbjct: 208 EYIKAIW-DVINWKVVSERFEAA 229
>gnl|CDD|145761 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases,
C-terminal domain. superoxide dismutases (SODs)
catalyse the conversion of superoxide radicals to
hydrogen peroxide and molecular oxygen. Three
evolutionarily distinct families of SODs are known, of
which the Mn/Fe-binding family is one. In humans, there
is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe
SOD. C-terminal domain is a mixed alpha/beta fold.
Length = 105
Score = 138 bits (349), Expect = 1e-33
Identities = 52/101 (51%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Query: 96 ALSDAIDDNFGSFEKFKSDLITAASTQFGSGWGWLSVK--NGKLEISKTQNAENPLINGA 153
L++AID++FGSF+KFK + AA+ FGSGW WL +GKL I T N +NPL G
Sbjct: 6 ELAEAIDEDFGSFDKFKEEFTAAAAGLFGSGWAWLVYDPESGKLRIVSTPNQDNPLTTGL 65
Query: 154 IPILGIDVWEHAYYLDFKYRRAHYIESFITNLVNWEYVCER 194
P+L +DVWEHAYYLD++ RR Y+++F N+VNW+ V +R
Sbjct: 66 TPLLTLDVWEHAYYLDYQNRRPDYLKAFW-NVVNWDEVAKR 105
>gnl|CDD|109149 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases,
alpha-hairpin domain. superoxide dismutases (SODs)
catalyse the conversion of superoxide radicals to
hydrogen peroxide and molecular oxygen. Three
evolutionarily distinct families of SODs are known, of
which the Mn/Fe-binding family is one. In humans, there
is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe
SOD. N-terminal domain is a long alpha antiparallel
hairpin. A small fragment of YTRE_LEPBI matches well -
sequencing error?.
Length = 82
Score = 95.0 bits (237), Expect = 1e-20
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 2 DFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSH 61
++LP+LPY YD L P++SKET+E HH HH+ Y +N E LEEII+K
Sbjct: 1 KYELPDLPYDYDALEPHISKETMEIHHGKHHQTYVNNLNAALEGLEEARKKLEEIILK-- 58
Query: 62 GSNAGLFNNASQYYNHNLFWACMK 85
LFNN ++NH+ FW +
Sbjct: 59 ALLGALFNNGGGHWNHSFFWKNLS 82
>gnl|CDD|48153 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 517
Score = 30.2 bits (68), Expect = 0.42
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 95 QALSDAIDDNFGSFEKFKSDLITAASTQFGS 125
+AL + D+ E F+ DL+ A T S
Sbjct: 129 EALLSSAVDHSSDEEAFREDLLNIARTTLSS 159
>gnl|CDD|29359 cd01937, ribokinase_group_D, Ribokinase-like subgroup D. Found in
bacteria and archaea, this subgroup is part of the
ribokinase/pfkB superfamily. Its oligomerization state
is unknown at this time..
Length = 254
Score = 29.5 bits (66), Expect = 0.60
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 22 ETLEYHHDVHHKNY-ADNALKLASDAEMLHLSLEEIIIKSHGSNAGLFNNASQYYNHNLF 80
L+ H + A+ A ++ + + II + G G + + Y
Sbjct: 151 VILKLHDVLKLSRVEAEVISTPTELARLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPAS 210
Query: 81 WACMKKNDGKGKV 93
+ G G V
Sbjct: 211 KKDVVDPTGAGDV 223
>gnl|CDD|34591 COG4986, COG4986, ABC-type anion transport system, duplicated
permease component [Inorganic ion transport and
metabolism].
Length = 523
Score = 27.2 bits (60), Expect = 2.9
Identities = 30/135 (22%), Positives = 39/135 (28%), Gaps = 36/135 (26%)
Query: 71 ASQYYNHNLFWACMKKNDGKGKVPQALSDAIDD-NFGSFEKFKS--------DLITAAST 121
+ YY A G +P +A + N G + K++ LIT ST
Sbjct: 395 GTFYYIFYNVIA------GAKALPVEYFEAAKNYNLGGWAKWRRIILPGTFPYLITGLST 448
Query: 122 QFGSGWGWLSVKN--------------GKLEISKTQNAENPLINGAIPILGIDV------ 161
G W L V GK T + P I+GI V
Sbjct: 449 TIGGAWNALIVGEYWSWGHTLLVAHGLGKYIAVATAAGDIPRALWGSFIMGIVVVVYNIL 508
Query: 162 -WEHAYYLDFKYRRA 175
W L K A
Sbjct: 509 FWRRLMDLARKRYVA 523
>gnl|CDD|35584 KOG0363, KOG0363, KOG0363, Chaperonin complex component, TCP-1 beta
subunit (CCT2) [Posttranslational modification, protein
turnover, chaperones].
Length = 527
Score = 27.2 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 95 QALSDAIDDNFGSFEKFKSDLITAASTQFGS 125
+AL+ + DN EKF+ DL+ A T S
Sbjct: 134 EALTKSSIDNSSDKEKFREDLLKIARTTLSS 164
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.133 0.410
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,560,009
Number of extensions: 126702
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 12
Length of query: 205
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,340,536
Effective search space: 503502176
Effective search space used: 503502176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)