RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780495|ref|YP_003064908.1| superoxide dismutase [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >gnl|CDD|178288 PLN02685, PLN02685, iron superoxide dismutase. Length = 299 Score = 185 bits (470), Expect = 9e-48 Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 20/216 (9%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62 F+L PY D L P+MS+ETLEYH HH+ Y DN K E+ +SLE++++ ++ Sbjct: 47 FELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLITYN 106 Query: 63 SNAGL--FNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 L FNNA+Q +NH FW MK G GK L I+ +FGSFE+F + +AA+ Sbjct: 107 KGDMLPAFNNAAQAWNHEFFWESMKPGGG-GKPSGELLQLIERDFGSFERFVEEFKSAAA 165 Query: 121 TQFGSGWGWLSVK-----------------NGKLEISKTQNAENPLINGAIPILGIDVWE 163 TQFGSGW WL+ K + KL + K+ NA NPL+ P+L IDVWE Sbjct: 166 TQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 225 Query: 164 HAYYLDFKYRRAHYIESFITNLVNWEYVCERYETAM 199 HAYYLDF+ RR YI +F+ LV+WE V R E+A Sbjct: 226 HAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAK 261 >gnl|CDD|182534 PRK10543, PRK10543, superoxide dismutase; Provisional. Length = 193 Score = 178 bits (453), Expect = 7e-46 Identities = 90/194 (46%), Positives = 118/194 (60%), Gaps = 6/194 (3%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60 M F+LP LPY+ D L+P++S ETLEYH+ HH+ Y N L SLEEI+ S Sbjct: 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS 60 Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120 G G+FNNA+Q +NH +W C+ N G G+ +++AI +FGSF FK+ AA Sbjct: 61 EG---GVFNNAAQVWNHTFYWNCLAPNAG-GEPTGKVAEAIAASFGSFADFKAQFTDAAI 116 Query: 121 TQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179 FGSGW WL +GKL I T NA PL A P+L +DVWEHAYY+D++ R Y+E Sbjct: 117 KNFGSGWTWLVKNADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLE 176 Query: 180 SFITNLVNWEYVCE 193 F LVNWE+V + Sbjct: 177 HFWA-LVNWEFVAK 189 >gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional. Length = 193 Score = 176 bits (448), Expect = 3e-45 Identities = 82/196 (41%), Positives = 122/196 (62%), Gaps = 7/196 (3%) Query: 6 PNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNA 65 P LPY +LSP++S+ETL++H+ HH Y + L + + +LEE+I + G+ Sbjct: 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYSGA-- 58 Query: 66 GLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGS 125 +FNNA+Q +NHN +W M N G G+ + + ID+ FGSF+ FK++ S FGS Sbjct: 59 -VFNNAAQIWNHNFYWLSMGPNGG-GEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGS 116 Query: 126 GWGWLSVKN-GKLEISKTQNAENPL-INGAIPILGIDVWEHAYYLDFKYRRAHYIESFIT 183 GWGWL +KN GKLEI +T +A NP+ N P+L D+WEHAYY+D++ RA Y+ S+ Sbjct: 117 GWGWLVLKNDGKLEIVQTHDAGNPIKDNTGKPLLTCDIWEHAYYIDYRNDRASYVNSWW- 175 Query: 184 NLVNWEYVCERYETAM 199 N VNW++ + + M Sbjct: 176 NKVNWDFANKNLKKLM 191 >gnl|CDD|177838 PLN02184, PLN02184, superoxide dismutase [Fe]. Length = 212 Score = 176 bits (446), Expect = 4e-45 Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 3/195 (1%) Query: 9 PYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGL- 67 P++ D L P+MSK+TLE+H HH+ Y DN K E+ LE II ++ + L Sbjct: 17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLP 76 Query: 68 -FNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSG 126 FNNA+Q +NH FW MK G GK L ++ +F S+EKF + AA+TQFG+G Sbjct: 77 AFNNAAQAWNHEFFWESMKPGGG-GKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAG 135 Query: 127 WGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESFITNLV 186 W WL+ N KL++ KT NA NPL+ G+ P+L IDVWEHAYYLDF+ RR YI++F+TNLV Sbjct: 136 WAWLAYSNEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLV 195 Query: 187 NWEYVCERYETAMLA 201 +WE V R E A A Sbjct: 196 SWEAVSARLEAAKAA 210 >gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional. Length = 206 Score = 169 bits (430), Expect = 4e-43 Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 15/209 (7%) Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNA-LKLASDAEMLHLSLEEIIIK 59 M + LP+LPY+YD L P+ K+T+E HH HH+ Y +NA L S E +L +EE+I K Sbjct: 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITK 60 Query: 60 SHGSNAG----LFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDL 115 A L NNA + NH+LFW +KK + L AI+ +FGS + FK++ Sbjct: 61 LDQLPADKKTVLRNNAGGHANHSLFWKGLKK---GTTLQGDLKAAIERDFGSVDNFKAEF 117 Query: 116 ITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYYLD 169 AA+T+FGSGW WL +K KL + T N ++PL+ AI PILG+DVWEHAYYL Sbjct: 118 EKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLK 177 Query: 170 FKYRRAHYIESFITNLVNWEYVCERYETA 198 F+ RR YI+ F N+VNW+ R+ Sbjct: 178 FQNRRPDYIKEF-WNVVNWDEAAARFAAK 205 >gnl|CDD|166263 PLN02622, PLN02622, iron superoxide dismutase. Length = 261 Score = 164 bits (415), Expect = 2e-41 Identities = 83/202 (41%), Positives = 119/202 (58%), Gaps = 8/202 (3%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIKSH 61 + L PY D L PYMS+ TLE H HH+ Y + K LA D + +++E++ ++ Sbjct: 48 YGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTY 107 Query: 62 GSNAGL--FNNASQYYNHNLFWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITA 118 + L FNNA+Q +NH+ FW M+ G G +P+ + + I+ +FGSF F+ A Sbjct: 108 NNGNPLPEFNNAAQVWNHDFFWESMQP--GGGDMPELGVLEQIEKDFGSFTNFREKFTEA 165 Query: 119 ASTQFGSGWGWLSVKNG--KLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAH 176 A T FGSGW WL +K +LE+ KT NA NPL+ IPI+ +DVWEHAYYLD+K R Sbjct: 166 ALTLFGSGWVWLVLKREERRLEVVKTSNAINPLVWDDIPIICLDVWEHAYYLDYKNDRGK 225 Query: 177 YIESFITNLVNWEYVCERYETA 198 Y+ +F+ +LV+W R A Sbjct: 226 YVNAFMNHLVSWNAAMARMARA 247 >gnl|CDD|178090 PLN02471, PLN02471, superoxide dismutase [Mn]. Length = 231 Score = 121 bits (306), Expect = 9e-29 Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 19/205 (9%) Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEE----III 58 F LP+LPY Y L P +S E ++ HH HH+ Y N K E L ++E+ ++ Sbjct: 31 FTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNK---ALEQLDQAVEKGDASAVV 87 Query: 59 KSHGSNAGLFNNASQYYNHNLFWACMKK-NDGKGKVPQA-LSDAIDDNFGSFEKFKSDLI 116 K A FN + NH++FW + ++G G+ P L AID++FGS E + Sbjct: 88 KLQS--AIKFNGGG-HVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMS 144 Query: 117 TAASTQFGSGWGWLSV--KNGKLEISKTQNAENPLINGA---IPILGIDVWEHAYYLDFK 171 + GSGW WL + + KL + T N ++PL+ +P+LGIDVWEHAYYL +K Sbjct: 145 AEGAAVQGSGWVWLGLDKELKKLVVETTAN-QDPLVTKGPSLVPLLGIDVWEHAYYLQYK 203 Query: 172 YRRAHYIESFITNLVNWEYVCERYE 196 R Y+++ I ++NW+Y E YE Sbjct: 204 NVRPDYLKN-IWKVMNWKYASEVYE 227 >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase. Length = 468 Score = 30.1 bits (68), Expect = 0.43 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 33 KNY-ADNALKLASDAEMLHLSLEEIIIKSHGSNAGLF 68 KNY +N +L + L LE IK SNAGLF Sbjct: 323 KNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLF 359 >gnl|CDD|163273 TIGR03458, YgfH_subfam, succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously. Length = 485 Score = 29.1 bits (66), Expect = 0.80 Identities = 12/29 (41%), Positives = 15/29 (51%) Query: 93 VPQALSDAIDDNFGSFEKFKSDLITAAST 121 VP AL+ + E FK L+T AST Sbjct: 32 VPAALAKRAKAAHAAGEPFKITLLTGAST 60 >gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase. Length = 1159 Score = 27.8 bits (62), Expect = 1.9 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Query: 137 LEISKTQNAENPL---INGAIPILGIDVWE--HAYYLDFKYRRAHYIESFITNLVNWEYV 191 L+++K QN+ N L IN A L V E AY L Y Y+ FI NL N YV Sbjct: 695 LDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRL---YTVVPYLVKFIDNLTNI-YV 750 Query: 192 CERY 195 R+ Sbjct: 751 --RF 752 >gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. Length = 985 Score = 27.4 bits (61), Expect = 2.7 Identities = 7/25 (28%), Positives = 11/25 (44%) Query: 74 YYNHNLFWACMKKNDGKGKVPQALS 98 YY+HN A + D P+ + Sbjct: 242 YYDHNTVGALERVTDHLDAPPKGVP 266 >gnl|CDD|181455 PRK08517, PRK08517, DNA polymerase III subunit epsilon; Provisional. Length = 257 Score = 25.8 bits (57), Expect = 9.1 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Query: 21 KETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEI 56 KE L +VHH+ YAD AL + E+ + L + Sbjct: 200 KELLGIEIEVHHRAYAD-AL---AAYEIFKICLLNL 231 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.133 0.410 Gapped Lambda K H 0.267 0.0650 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,356,749 Number of extensions: 199620 Number of successful extensions: 379 Number of sequences better than 10.0: 1 Number of HSP's gapped: 356 Number of HSP's successfully gapped: 17 Length of query: 205 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 116 Effective length of database: 4,071,361 Effective search space: 472277876 Effective search space used: 472277876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.1 bits)