RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780495|ref|YP_003064908.1| superoxide dismutase
[Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>gnl|CDD|178288 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 185 bits (470), Expect = 9e-48
Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 20/216 (9%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHG 62
F+L PY D L P+MS+ETLEYH HH+ Y DN K E+ +SLE++++ ++
Sbjct: 47 FELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLITYN 106
Query: 63 SNAGL--FNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
L FNNA+Q +NH FW MK G GK L I+ +FGSFE+F + +AA+
Sbjct: 107 KGDMLPAFNNAAQAWNHEFFWESMKPGGG-GKPSGELLQLIERDFGSFERFVEEFKSAAA 165
Query: 121 TQFGSGWGWLSVK-----------------NGKLEISKTQNAENPLINGAIPILGIDVWE 163
TQFGSGW WL+ K + KL + K+ NA NPL+ P+L IDVWE
Sbjct: 166 TQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSPLLTIDVWE 225
Query: 164 HAYYLDFKYRRAHYIESFITNLVNWEYVCERYETAM 199
HAYYLDF+ RR YI +F+ LV+WE V R E+A
Sbjct: 226 HAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAK 261
>gnl|CDD|182534 PRK10543, PRK10543, superoxide dismutase; Provisional.
Length = 193
Score = 178 bits (453), Expect = 7e-46
Identities = 90/194 (46%), Positives = 118/194 (60%), Gaps = 6/194 (3%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKS 60
M F+LP LPY+ D L+P++S ETLEYH+ HH+ Y N L SLEEI+ S
Sbjct: 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIVRSS 60
Query: 61 HGSNAGLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAAS 120
G G+FNNA+Q +NH +W C+ N G G+ +++AI +FGSF FK+ AA
Sbjct: 61 EG---GVFNNAAQVWNHTFYWNCLAPNAG-GEPTGKVAEAIAASFGSFADFKAQFTDAAI 116
Query: 121 TQFGSGWGWLSVK-NGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIE 179
FGSGW WL +GKL I T NA PL A P+L +DVWEHAYY+D++ R Y+E
Sbjct: 117 KNFGSGWTWLVKNADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLE 176
Query: 180 SFITNLVNWEYVCE 193
F LVNWE+V +
Sbjct: 177 HFWA-LVNWEFVAK 189
>gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional.
Length = 193
Score = 176 bits (448), Expect = 3e-45
Identities = 82/196 (41%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 6 PNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNA 65
P LPY +LSP++S+ETL++H+ HH Y + L + + +LEE+I + G+
Sbjct: 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPLENKTLEELIKEYSGA-- 58
Query: 66 GLFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGS 125
+FNNA+Q +NHN +W M N G G+ + + ID+ FGSF+ FK++ S FGS
Sbjct: 59 -VFNNAAQIWNHNFYWLSMGPNGG-GEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGS 116
Query: 126 GWGWLSVKN-GKLEISKTQNAENPL-INGAIPILGIDVWEHAYYLDFKYRRAHYIESFIT 183
GWGWL +KN GKLEI +T +A NP+ N P+L D+WEHAYY+D++ RA Y+ S+
Sbjct: 117 GWGWLVLKNDGKLEIVQTHDAGNPIKDNTGKPLLTCDIWEHAYYIDYRNDRASYVNSWW- 175
Query: 184 NLVNWEYVCERYETAM 199
N VNW++ + + M
Sbjct: 176 NKVNWDFANKNLKKLM 191
>gnl|CDD|177838 PLN02184, PLN02184, superoxide dismutase [Fe].
Length = 212
Score = 176 bits (446), Expect = 4e-45
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 3/195 (1%)
Query: 9 PYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEIIIKSHGSNAGL- 67
P++ D L P+MSK+TLE+H HH+ Y DN K E+ LE II ++ + L
Sbjct: 17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLP 76
Query: 68 -FNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDLITAASTQFGSG 126
FNNA+Q +NH FW MK G GK L ++ +F S+EKF + AA+TQFG+G
Sbjct: 77 AFNNAAQAWNHEFFWESMKPGGG-GKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAG 135
Query: 127 WGWLSVKNGKLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAHYIESFITNLV 186
W WL+ N KL++ KT NA NPL+ G+ P+L IDVWEHAYYLDF+ RR YI++F+TNLV
Sbjct: 136 WAWLAYSNEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLV 195
Query: 187 NWEYVCERYETAMLA 201
+WE V R E A A
Sbjct: 196 SWEAVSARLEAAKAA 210
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional.
Length = 206
Score = 169 bits (430), Expect = 4e-43
Identities = 91/209 (43%), Positives = 124/209 (59%), Gaps = 15/209 (7%)
Query: 1 MDFKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNA-LKLASDAEMLHLSLEEIIIK 59
M + LP+LPY+YD L P+ K+T+E HH HH+ Y +NA L S E +L +EE+I K
Sbjct: 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITK 60
Query: 60 SHGSNAG----LFNNASQYYNHNLFWACMKKNDGKGKVPQALSDAIDDNFGSFEKFKSDL 115
A L NNA + NH+LFW +KK + L AI+ +FGS + FK++
Sbjct: 61 LDQLPADKKTVLRNNAGGHANHSLFWKGLKK---GTTLQGDLKAAIERDFGSVDNFKAEF 117
Query: 116 ITAASTQFGSGWGWLSVKNGKLEISKTQNAENPLINGAI------PILGIDVWEHAYYLD 169
AA+T+FGSGW WL +K KL + T N ++PL+ AI PILG+DVWEHAYYL
Sbjct: 118 EKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLK 177
Query: 170 FKYRRAHYIESFITNLVNWEYVCERYETA 198
F+ RR YI+ F N+VNW+ R+
Sbjct: 178 FQNRRPDYIKEF-WNVVNWDEAAARFAAK 205
>gnl|CDD|166263 PLN02622, PLN02622, iron superoxide dismutase.
Length = 261
Score = 164 bits (415), Expect = 2e-41
Identities = 83/202 (41%), Positives = 119/202 (58%), Gaps = 8/202 (3%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALK-LASDAEMLHLSLEEIIIKSH 61
+ L PY D L PYMS+ TLE H HH+ Y + K LA D + +++E++ ++
Sbjct: 48 YGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTY 107
Query: 62 GSNAGL--FNNASQYYNHNLFWACMKKNDGKGKVPQ-ALSDAIDDNFGSFEKFKSDLITA 118
+ L FNNA+Q +NH+ FW M+ G G +P+ + + I+ +FGSF F+ A
Sbjct: 108 NNGNPLPEFNNAAQVWNHDFFWESMQP--GGGDMPELGVLEQIEKDFGSFTNFREKFTEA 165
Query: 119 ASTQFGSGWGWLSVKNG--KLEISKTQNAENPLINGAIPILGIDVWEHAYYLDFKYRRAH 176
A T FGSGW WL +K +LE+ KT NA NPL+ IPI+ +DVWEHAYYLD+K R
Sbjct: 166 ALTLFGSGWVWLVLKREERRLEVVKTSNAINPLVWDDIPIICLDVWEHAYYLDYKNDRGK 225
Query: 177 YIESFITNLVNWEYVCERYETA 198
Y+ +F+ +LV+W R A
Sbjct: 226 YVNAFMNHLVSWNAAMARMARA 247
>gnl|CDD|178090 PLN02471, PLN02471, superoxide dismutase [Mn].
Length = 231
Score = 121 bits (306), Expect = 9e-29
Identities = 75/205 (36%), Positives = 111/205 (54%), Gaps = 19/205 (9%)
Query: 3 FKLPNLPYSYDDLSPYMSKETLEYHHDVHHKNYADNALKLASDAEMLHLSLEE----III 58
F LP+LPY Y L P +S E ++ HH HH+ Y N K E L ++E+ ++
Sbjct: 31 FTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNK---ALEQLDQAVEKGDASAVV 87
Query: 59 KSHGSNAGLFNNASQYYNHNLFWACMKK-NDGKGKVPQA-LSDAIDDNFGSFEKFKSDLI 116
K A FN + NH++FW + ++G G+ P L AID++FGS E +
Sbjct: 88 KLQS--AIKFNGGG-HVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMS 144
Query: 117 TAASTQFGSGWGWLSV--KNGKLEISKTQNAENPLINGA---IPILGIDVWEHAYYLDFK 171
+ GSGW WL + + KL + T N ++PL+ +P+LGIDVWEHAYYL +K
Sbjct: 145 AEGAAVQGSGWVWLGLDKELKKLVVETTAN-QDPLVTKGPSLVPLLGIDVWEHAYYLQYK 203
Query: 172 YRRAHYIESFITNLVNWEYVCERYE 196
R Y+++ I ++NW+Y E YE
Sbjct: 204 NVRPDYLKN-IWKVMNWKYASEVYE 227
>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase.
Length = 468
Score = 30.1 bits (68), Expect = 0.43
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 33 KNY-ADNALKLASDAEMLHLSLEEIIIKSHGSNAGLF 68
KNY +N +L + L LE IK SNAGLF
Sbjct: 323 KNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLF 359
>gnl|CDD|163273 TIGR03458, YgfH_subfam, succinate CoA transferases. A closely
related clade not included in this family are the Ach1p
proteins of fungi which are acetyl-CoA hydrolases. This
name has been applied to many of the proteins detected
by this model, possibly erroneously.
Length = 485
Score = 29.1 bits (66), Expect = 0.80
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 93 VPQALSDAIDDNFGSFEKFKSDLITAAST 121
VP AL+ + E FK L+T AST
Sbjct: 32 VPAALAKRAKAAHAAGEPFKITLLTGAST 60
>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 27.8 bits (62), Expect = 1.9
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 137 LEISKTQNAENPL---INGAIPILGIDVWE--HAYYLDFKYRRAHYIESFITNLVNWEYV 191
L+++K QN+ N L IN A L V E AY L Y Y+ FI NL N YV
Sbjct: 695 LDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRL---YTVVPYLVKFIDNLTNI-YV 750
Query: 192 CERY 195
R+
Sbjct: 751 --RF 752
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 27.4 bits (61), Expect = 2.7
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 74 YYNHNLFWACMKKNDGKGKVPQALS 98
YY+HN A + D P+ +
Sbjct: 242 YYDHNTVGALERVTDHLDAPPKGVP 266
>gnl|CDD|181455 PRK08517, PRK08517, DNA polymerase III subunit epsilon;
Provisional.
Length = 257
Score = 25.8 bits (57), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 21 KETLEYHHDVHHKNYADNALKLASDAEMLHLSLEEI 56
KE L +VHH+ YAD AL + E+ + L +
Sbjct: 200 KELLGIEIEVHHRAYAD-AL---AAYEIFKICLLNL 231
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.133 0.410
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,356,749
Number of extensions: 199620
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 17
Length of query: 205
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,071,361
Effective search space: 472277876
Effective search space used: 472277876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)