HHsearch alignment for GI: 254780496 and conserved domain: TIGR00988
>TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685 Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=99.91 E-value=6.7e-25 Score=174.16 Aligned_cols=92 Identities=32% Similarity=0.553 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 66999999999971-99999999999999999999975599600004169998502676430688988899568853776
Q gi|254780496|r 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 (114)
Q Consensus 5 mtK~eli~~ia~~~-g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~F 83 (114)
T Consensus 1 M~kSELI~~i~~~~~~l~~k~VE~~v~~~lE~~~~alA~GdRiE~RGFGsFSl~~R~~R~GRNPkTG~~V~ld~K~VP~F 80 (94)
T TIGR00988 1 MTKSELIERIATEQSHLFAKDVEKAVKTMLEEMIEALARGDRIEIRGFGSFSLHYRAPRTGRNPKTGESVALDGKYVPHF 80 (94)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 93378889987407875533389999999999999860798467601442000005788898899887665478042840
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 1698999997311
Q gi|254780496|r 84 KASSILKKRIMDD 96 (114)
Q Consensus 84 kpsk~Lk~~in~~ 96 (114)
T Consensus 81 K~GK~LRDR~N~~ 93 (94)
T TIGR00988 81 KPGKELRDRLNEG 93 (94)
T ss_pred CCCCCHHCCCCCC
T ss_conf 4863011004788