HHsearch alignment for GI: 254780496 and conserved domain: cd00591
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=99.90 E-value=7e-24 Score=167.90 Aligned_cols=87 Identities=36% Similarity=0.673 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEECC
Q ss_conf 69999999999719999999999999999999997559960000416999850267643068898889956885377616
Q gi|254780496|r 6 TRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKA 85 (114)
Q Consensus 6 tK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fkp 85 (114)
T Consensus 1 TK~dLi~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~~V~i~~fG~F~~~~~~~r~grNP~Tge~i~i~~~~~v~Fk~ 80 (87)
T cd00591 1 TKSELIEAIAEKTGLSKKDAEAAVDAFLDVITEALAKGEKVELPGFGTFEVRERAARTGRNPKTGEEIKIPAKKVVKFKP 80 (87)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEECCEEEECCCCCCEEEECCCCCEEECC
T ss_conf 98999999999869699999999999999999999779969963607999998256244888999889975976679750
Q ss_pred CHHHHHH
Q ss_conf 9899999
Q gi|254780496|r 86 SSILKKR 92 (114)
Q Consensus 86 sk~Lk~~ 92 (114)
T Consensus 81 sk~lK~~ 87 (87)
T cd00591 81 GKALKDA 87 (87)
T ss_pred CHHHCCC
T ss_conf 8787179