HHsearch alignment of GI: 254780496 and MMDB domain: 3c4i_A_
>3c4i_A (A:) DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.92 E-value=4.6e-25 Score=174.78 Aligned_cols=96 Identities=23% Similarity=0.508 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||..||+++|+++.++..+|++|+++|.++|.+|+.|+|+|||+|+++.+++|.++||+|||.+.||++++|+|+
T Consensus 1 Mtk~eli~~ia~~~~~s~~~v~~~i~~~~~~i~~~L~~g~~V~l~~fG~F~~~~~~~r~~~np~T~e~i~i~~k~~v~Fk 80 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR 80 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 97899999999874989999999999999999999964996131556899998756811068599988986387228996
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 6989999973111013
Q gi|254780496|r 85 ASSILKKRIMDDMRGR 100 (114)
Q Consensus 85 psk~Lk~~in~~~~~~ 100 (114)
||+.|++.||......
T Consensus 81 psk~Lk~~in~~~~~~ 96 (99)
T 3c4i_A 81 PGAQFKAVVSGAQRLP 96 (99)
T ss_dssp ECHHHHHHHHTSSCCC
T ss_pred CCHHHHHHHCCCCCCC
T ss_conf 2989999866666899