HHsearch results for GI: 254780496 and protein with PDBid: 1b8z_A
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=99.92 E-value=1.6e-25 Score=176.71 Aligned_cols=90 Identities=28% Similarity=0.556 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+||++.||+++|+++.+++.+|++|+++|.++|.+|+.|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus 1 MnK~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~R~~rNP~Tge~~~ip~k~~v~Fk 80 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKFK 80 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 97899999999863999999999999999999999972887760671699998756744058699988996486308996
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999973
Q gi|254780496|r 85 ASSILKKRIM 94 (114)
Q Consensus 85 psk~Lk~~in 94 (114)
||+.|++.|.
T Consensus 81 ~sk~lk~~ik 90 (90)
T 1b8z_A 81 PGKALKEKVK 90 (90)
T ss_dssp ECHHHHHHHC
T ss_pred ECHHHHHHHC
T ss_conf 3999998639