HHsearch results for GI: 254780496 and protein with PDBid: 1p71_A
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=99.94 E-value=2.3e-26 Score=181.82 Aligned_cols=92 Identities=21% Similarity=0.520 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++.+++.++++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus 1 M~K~eLi~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~Fk 80 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFS 80 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 98899999999855969999999999999999999854996671371699999845802048699988986487308981
Q ss_pred CCHHHHHHHHHH
Q ss_conf 698999997311
Q gi|254780496|r 85 ASSILKKRIMDD 96 (114)
Q Consensus 85 psk~Lk~~in~~ 96 (114)
||+.|++.||..
T Consensus 81 ~sk~lk~~vN~~ 92 (94)
T 1p71_A 81 AGKLFREKVAPP 92 (94)
T ss_dssp ECHHHHHHHSCC
T ss_pred CCHHHHHHHCCC
T ss_conf 598999976768