HHsearch results for GI: 254780496 and protein with PDBid: 3c4i_A

>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.94  E-value=2.3e-26  Score=181.74  Aligned_cols=94  Identities=23%  Similarity=0.538  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+|||+.||+++|+++.+++.+|++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus         1 MtK~eli~~la~~~~lsk~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~r~~rNP~Tge~i~i~~k~~v~Fk   80 (99)
T 3c4i_A            1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR   80 (99)
T ss_dssp             CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf             97899999999874989999999999999999999964996131556899998756811068599988986387228996


Q ss_pred             CCHHHHHHHHHHHC
Q ss_conf             69899999731110
Q gi|254780496|r   85 ASSILKKRIMDDMR   98 (114)
Q Consensus        85 psk~Lk~~in~~~~   98 (114)
                      ||+.||+.||+..+
T Consensus        81 psk~LK~~vn~~~~   94 (99)
T 3c4i_A           81 PGAQFKAVVSGAQR   94 (99)
T ss_dssp             ECHHHHHHHHTSSC
T ss_pred             CCHHHHHHHCCCCC
T ss_conf             29899998666668