HHsearch results for GI: 254780496 and protein with PDBid: 3c4i_A
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.3e-26 Score=181.74 Aligned_cols=94 Identities=23% Similarity=0.538 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++.+++.+|++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus 1 MtK~eli~~la~~~~lsk~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~r~~rNP~Tge~i~i~~k~~v~Fk 80 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR 80 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 97899999999874989999999999999999999964996131556899998756811068599988986387228996
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 69899999731110
Q gi|254780496|r 85 ASSILKKRIMDDMR 98 (114)
Q Consensus 85 psk~Lk~~in~~~~ 98 (114)
||+.||+.||+..+
T Consensus 81 psk~LK~~vn~~~~ 94 (99)
T 3c4i_A 81 PGAQFKAVVSGAQR 94 (99)
T ss_dssp ECHHHHHHHHTSSC
T ss_pred CCHHHHHHHCCCCC
T ss_conf 29899998666668