Query gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 114
No_of_seqs 103 out of 2506
Neff 6.4
Searched_HMMs 23785
Date Tue May 31 21:01:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780496.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iie_A Integration HOST factor 99.9 7.3E-27 3.1E-31 184.9 10.7 101 2-102 44-144 (204)
2 1owf_A IHF-alpha, integration 99.9 1.6E-26 6.7E-31 182.8 11.6 95 4-98 2-96 (99)
3 3c4i_A DNA-binding protein HU 99.9 2.3E-26 9.9E-31 181.7 11.4 94 5-98 1-94 (99)
4 1p71_A DNA-binding protein HU; 99.9 2.3E-26 9.6E-31 181.8 11.2 92 5-96 1-92 (94)
5 1owf_B IHF-beta, integration H 99.9 5E-26 2.1E-30 179.7 10.9 91 5-95 1-92 (94)
6 2o97_B NS1, HU-1, DNA-binding 99.9 2.6E-26 1.1E-30 181.4 9.3 90 5-94 1-90 (90)
7 1mul_A NS2, HU-2, DNA binding 99.9 1.5E-25 6.2E-30 176.9 10.0 90 5-94 1-90 (90)
8 2np2_A HBB; protein-DNA comple 99.9 1.2E-25 5.2E-30 177.3 9.2 95 2-96 6-106 (108)
9 1b8z_A Protein (histonelike pr 99.9 1.6E-25 6.5E-30 176.7 8.5 90 5-94 1-90 (90)
10 1hue_A HU protein; DNA-binding 99.9 1.5E-25 6.4E-30 176.8 8.3 90 5-94 1-90 (90)
11 1exe_A Transcription factor 1; 99.9 2.4E-26 1E-30 181.7 4.1 93 5-97 1-93 (99)
12 2iie_A Integration HOST factor 99.6 3.2E-16 1.4E-20 119.6 6.7 58 38-95 136-193 (204)
13 1i27_A Transcription factor II 57.7 6.6 0.00028 19.6 2.9 36 1-36 20-56 (73)
14 3h5q_A PYNP, pyrimidine-nucleo 44.7 13 0.00055 17.8 2.8 33 2-34 1-33 (436)
15 1qb2_A SRP54, human signal rec 42.1 20 0.00082 16.7 4.6 32 3-34 55-101 (109)
16 1z67_A Hypothetical protein S4 40.2 21 0.00088 16.5 5.3 40 8-47 75-114 (135)
17 1nha_A TFIIF-alpha, transcript 35.4 17 0.0007 17.2 2.1 36 1-36 29-65 (82)
18 2cp9_A EF-TS, EF-TSMT, elongat 33.8 27 0.0011 15.9 3.2 34 5-38 7-40 (64)
19 1jeo_A MJ1247, hypothetical pr 29.5 31 0.0013 15.5 2.7 49 5-53 1-50 (180)
20 2tpt_A Thymidine phosphorylase 27.8 34 0.0014 15.3 4.1 30 5-34 2-31 (440)
21 1o17_A Anthranilate PRT, anthr 27.6 34 0.0014 15.2 3.5 30 5-34 1-30 (345)
22 2i2w_A Phosphoheptose isomeras 26.1 26 0.0011 16.0 1.8 26 27-52 48-73 (212)
23 2ysk_A Hypothetical protein TT 25.9 26 0.0011 16.0 1.8 41 7-47 16-57 (145)
24 3cvj_A Putative phosphoheptose 25.1 38 0.0016 15.0 2.7 29 25-53 24-52 (243)
25 1aip_C EF-TS, elongation facto 24.9 38 0.0016 14.9 4.0 28 5-32 1-28 (196)
26 1mfq_C SRP54, signal recogniti 23.8 40 0.0017 14.8 4.6 32 3-34 68-114 (129)
27 2dsj_A Pyrimidine-nucleoside ( 21.9 43 0.0018 14.6 3.5 29 5-33 1-29 (423)
28 3g2b_A Coenzyme PQQ synthesis 21.9 43 0.0018 14.6 5.6 37 2-38 53-89 (95)
No 1
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=99.94 E-value=7.3e-27 Score=184.87 Aligned_cols=101 Identities=32% Similarity=0.594 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEE
Q ss_conf 87666999999999971999999999999999999999755996000041699985026764306889888995688537
Q gi|254780496|r 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVV 81 (114)
Q Consensus 2 ~~~mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v 81 (114)
..+|||+|||+.||+++|+++.+++.+|++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|
T Consensus 44 ~~~mTK~ELi~~Ia~~tglSkkda~~ivd~f~d~I~e~L~~g~~V~L~gFGtF~vk~rkaR~grNPkTgE~i~IpakkvV 123 (204)
T 2iie_A 44 SGGLTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVV 123 (204)
T ss_dssp SSSBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBCCBCTTTCCBCCBCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCEEEECCCCCCEEEECCCCCE
T ss_conf 99736999999999986979999999999999999999864986988505789998875701058699988985486417
Q ss_pred EECCCHHHHHHHHHHHCCCCC
Q ss_conf 761698999997311101334
Q gi|254780496|r 82 VFKASSILKKRIMDDMRGRKC 102 (114)
Q Consensus 82 ~Fkpsk~Lk~~in~~~~~~~~ 102 (114)
+|+||+.||+.||+..++...
T Consensus 124 kFKpsK~LK~~VN~~~qge~v 144 (204)
T 2iie_A 124 TFRPGQKLKSRVENAGGGERI 144 (204)
T ss_dssp EEEECHHHHHHHHHHCCCCCE
T ss_pred EEECCHHHHHHHHCCCCCCCC
T ss_conf 981099999998587878765
No 2
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_A 1ihf_A 1owg_A 2ht0_A
Probab=99.94 E-value=1.6e-26 Score=182.79 Aligned_cols=95 Identities=32% Similarity=0.611 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 66699999999997199999999999999999999975599600004169998502676430688988899568853776
Q gi|254780496|r 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 (114)
Q Consensus 4 ~mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~F 83 (114)
+|||+|||+.||+++|+++.+++.++++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 2 ~mTK~eli~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~r~~r~~rNP~Tge~i~ip~k~~v~F 81 (99)
T 1owf_A 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF 81 (99)
T ss_dssp CBCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECSSSCCEEEECCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 80699999999998498999999999999999999997799799710789999877682026889998899638722999
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 169899999731110
Q gi|254780496|r 84 KASSILKKRIMDDMR 98 (114)
Q Consensus 84 kpsk~Lk~~in~~~~ 98 (114)
+||+.|+++||+...
T Consensus 82 k~sk~Lk~~vn~~~~ 96 (99)
T 1owf_A 82 RPGQKLKSRVENASP 96 (99)
T ss_dssp EECHHHHHHHHTCCC
T ss_pred EECHHHHHHHCCCCC
T ss_conf 749999999808897
No 3
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.94 E-value=2.3e-26 Score=181.74 Aligned_cols=94 Identities=23% Similarity=0.538 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++.+++.+|++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus 1 MtK~eli~~la~~~~lsk~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~r~~rNP~Tge~i~i~~k~~v~Fk 80 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAFR 80 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 97899999999874989999999999999999999964996131556899998756811068599988986387228996
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 69899999731110
Q gi|254780496|r 85 ASSILKKRIMDDMR 98 (114)
Q Consensus 85 psk~Lk~~in~~~~ 98 (114)
||+.||+.||+..+
T Consensus 81 psk~LK~~vn~~~~ 94 (99)
T 3c4i_A 81 PGAQFKAVVSGAQR 94 (99)
T ss_dssp ECHHHHHHHHTSSC
T ss_pred CCHHHHHHHCCCCC
T ss_conf 29899998666668
No 4
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=99.94 E-value=2.3e-26 Score=181.82 Aligned_cols=92 Identities=21% Similarity=0.520 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++.+++.++++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus 1 M~K~eLi~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~Fk 80 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFS 80 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 98899999999855969999999999999999999854996671371699999845802048699988986487308981
Q ss_pred CCHHHHHHHHHH
Q ss_conf 698999997311
Q gi|254780496|r 85 ASSILKKRIMDD 96 (114)
Q Consensus 85 psk~Lk~~in~~ 96 (114)
||+.|++.||..
T Consensus 81 ~sk~lk~~vN~~ 92 (94)
T 1p71_A 81 AGKLFREKVAPP 92 (94)
T ss_dssp ECHHHHHHHSCC
T ss_pred CCHHHHHHHCCC
T ss_conf 598999976768
No 5
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=99.93 E-value=5e-26 Score=179.73 Aligned_cols=91 Identities=24% Similarity=0.452 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEE
Q ss_conf 6699999999997-199999999999999999999975599600004169998502676430688988899568853776
Q gi|254780496|r 5 ITRSDLVKSISKE-FGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVF 83 (114)
Q Consensus 5 mtK~eli~~ia~~-~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~F 83 (114)
|||+|||+.|+.+ +++++++++.+|++|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~R~~rNPkTge~i~ip~k~~v~F 80 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHF 80 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEECCCEEECCCCCCEEEECCCCCEEE
T ss_conf 97899999999867999999999999999999999997699599444089999983670137839998898648631898
Q ss_pred CCCHHHHHHHHH
Q ss_conf 169899999731
Q gi|254780496|r 84 KASSILKKRIMD 95 (114)
Q Consensus 84 kpsk~Lk~~in~ 95 (114)
+||+.|+++||-
T Consensus 81 k~sk~lk~~vN~ 92 (94)
T 1owf_B 81 KPGKELRDRANI 92 (94)
T ss_dssp EECHHHHHHHCC
T ss_pred ECCHHHHHHHCC
T ss_conf 179899998755
No 6
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E. coli; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=99.93 E-value=2.6e-26 Score=181.44 Aligned_cols=90 Identities=28% Similarity=0.517 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++++++.++++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus 1 M~K~eLi~~ia~~~~ls~~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 80 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFR 80 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECCC------------------CEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECEEEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 97899999999722989999999999999999999973998663306799999866735068799988997487308996
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999973
Q gi|254780496|r 85 ASSILKKRIM 94 (114)
Q Consensus 85 psk~Lk~~in 94 (114)
||+.|++.||
T Consensus 81 psk~lk~~vN 90 (90)
T 2o97_B 81 AGKALKDAVN 90 (90)
T ss_dssp ECHHHHHHCC
T ss_pred CCHHHHHHHC
T ss_conf 1989998639
No 7
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=99.93 E-value=1.5e-25 Score=176.86 Aligned_cols=90 Identities=28% Similarity=0.506 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++.+++.+||+|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus 1 M~K~eli~~la~~~~~~~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~v~~~~~r~~rNP~Tge~i~ip~~~~v~Fk 80 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV 80 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECC--------------CCEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCEEEECCCCCCEEEECCCCCEEEE
T ss_conf 98899999999804979999999999999999999972998182448999999846801178699978996387628997
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999973
Q gi|254780496|r 85 ASSILKKRIM 94 (114)
Q Consensus 85 psk~Lk~~in 94 (114)
||+.|++.|.
T Consensus 81 psk~Lk~~vk 90 (90)
T 1mul_A 81 SGKALKDAVK 90 (90)
T ss_dssp ECHHHHHHHC
T ss_pred ECHHHHHHHC
T ss_conf 0999998639
No 8
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=99.92 E-value=1.2e-25 Score=177.34 Aligned_cols=95 Identities=28% Similarity=0.446 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCC-CCCCCCCCCEEEE
Q ss_conf 87666999999999-----97199999999999999999999975599600004169998502676-4306889888995
Q gi|254780496|r 2 SKTITRSDLVKSIS-----KEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSR-VGRNLQTNQEVKI 75 (114)
Q Consensus 2 ~~~mtK~eli~~ia-----~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R-~~rNP~Tge~i~i 75 (114)
..+|||+|||+.|| +++++++.+++.+||+|+++|.++|.+|++|+|+|||+|+++.+++| .||||+|||.+.|
T Consensus 6 ~~~mtK~dli~~ia~~~~~~~~~lsk~~~~~~vd~~~~~I~~~L~~g~~V~i~gFGtF~~k~r~~R~~~rNPkTge~i~i 85 (108)
T 2np2_A 6 RPKVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVKV 85 (108)
T ss_dssp CCEEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBSSCBCTTTCCBCCB
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 46865999999999750223489689999999999999999999779959973588998871058766619499988885
Q ss_pred CCCCEEEECCCHHHHHHHHHH
Q ss_conf 688537761698999997311
Q gi|254780496|r 76 DPRRVVVFKASSILKKRIMDD 96 (114)
Q Consensus 76 p~k~~v~Fkpsk~Lk~~in~~ 96 (114)
|++++|+|+||+.|++.||+.
T Consensus 86 ~~~~~v~Fk~sk~lk~~vn~~ 106 (108)
T 2np2_A 86 LDHHVAYFRPGKDLKERVWGI 106 (108)
T ss_dssp CCEEEEEEEECHHHHHHHHSC
T ss_pred CCCCCEEECCCHHHHHHHCCC
T ss_conf 487667872798999997056
No 9
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=99.92 E-value=1.6e-25 Score=176.71 Aligned_cols=90 Identities=28% Similarity=0.556 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+||++.||+++|+++.+++.+|++|+++|.++|.+|+.|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus 1 MnK~eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~R~~rNP~Tge~~~ip~k~~v~Fk 80 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKFK 80 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEECCEEEECCCCCCEEEECCCCEEEEE
T ss_conf 97899999999863999999999999999999999972887760671699998756744058699988996486308996
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999973
Q gi|254780496|r 85 ASSILKKRIM 94 (114)
Q Consensus 85 psk~Lk~~in 94 (114)
||+.|++.|.
T Consensus 81 ~sk~lk~~ik 90 (90)
T 1b8z_A 81 PGKALKEKVK 90 (90)
T ss_dssp ECHHHHHHHC
T ss_pred ECHHHHHHHC
T ss_conf 3999998639
No 10
>1hue_A HU protein; DNA-binding; NMR {Geobacillus stearothermophilus} SCOP: a.55.1.1 PDB: 1huu_A
Probab=99.92 E-value=1.5e-25 Score=176.76 Aligned_cols=90 Identities=30% Similarity=0.628 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++++++.++++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus 1 MtK~eli~~la~~~~l~~~~~~~~v~~~~~~i~~~L~~~~~v~i~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~Fk 80 (90)
T 1hue_A 1 MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFK 80 (90)
T ss_dssp CBSHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTCCCCBTTTBEECCCCCCCCEEECSSSSSEEECCCCCCCCEE
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEE
T ss_conf 97899999999875989999999999999999999964996576420699999847821278599988997387318996
Q ss_pred CCHHHHHHHH
Q ss_conf 6989999973
Q gi|254780496|r 85 ASSILKKRIM 94 (114)
Q Consensus 85 psk~Lk~~in 94 (114)
||+.|++.|.
T Consensus 81 psk~lk~~ik 90 (90)
T 1hue_A 81 PGKALKDAVK 90 (90)
T ss_dssp CTTHHHHHTC
T ss_pred ECHHHHHHHC
T ss_conf 4989998639
No 11
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=99.92 E-value=2.4e-26 Score=181.70 Aligned_cols=93 Identities=22% Similarity=0.404 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf 66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK 84 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk 84 (114)
|||+|||+.||+++|+++.+++.++++|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus 1 M~K~eli~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~r~~r~grNP~Tge~i~ip~k~~v~Fk 80 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKGFNPQTQEALEIAPSVGVSVK 80 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHHHTCCCCBTTTBCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEEECCCCCCCCCCCCEEEECCCCCEEEE
T ss_conf 97899999999863989999999999999999999973998252243799998755811358399988986586427983
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 6989999973111
Q gi|254780496|r 85 ASSILKKRIMDDM 97 (114)
Q Consensus 85 psk~Lk~~in~~~ 97 (114)
||+.||+.||+..
T Consensus 81 ~sk~LK~~vn~~~ 93 (99)
T 1exe_A 81 PGESLKKAAEGLK 93 (99)
T ss_dssp CCHHHHHHHHHHT
T ss_pred CCHHHHHHHCCCC
T ss_conf 5989999982997
No 12
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=99.63 E-value=3.2e-16 Score=119.58 Aligned_cols=58 Identities=31% Similarity=0.502 Sum_probs=54.7
Q ss_pred HHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHH
Q ss_conf 9975599600004169998502676430688988899568853776169899999731
Q gi|254780496|r 38 DSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFKASSILKKRIMD 95 (114)
Q Consensus 38 ~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fkpsk~Lk~~in~ 95 (114)
+.-.++++|+|+|||+|.++.+++|.||||+|||.++||++++|+|+||+.|+++||.
T Consensus 136 N~~~qge~v~i~gFG~F~~~~r~aR~gRNPkTge~i~Ip~~~~~~Fk~sk~lk~~lN~ 193 (204)
T 2iie_A 136 ENAGGGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANI 193 (204)
T ss_dssp HHHCCCCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEEEECHHHHHHHCS
T ss_pred HCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEECCCHHHHHHHCC
T ss_conf 5878787654355289999851785677959999788648775567788899999736
No 13
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=57.74 E-value=6.6 Score=19.62 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Q ss_conf 987666999999999-971999999999999999999
Q gi|254780496|r 1 MSKTITRSDLVKSIS-KEFGLSRKDSTRFVTTLFNEI 36 (114)
Q Consensus 1 m~~~mtK~eli~~ia-~~~g~s~~~~~~~v~~~~~~i 36 (114)
|.+-||-+||+..+. .++|++.++.-.++..++.-|
T Consensus 20 ~RKPmTt~eLL~Kfk~kkt~ls~eq~V~~la~ILkki 56 (73)
T 1i27_A 20 TRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 56 (73)
T ss_dssp HHSCBCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 5089849999999864347887999999999999970
No 14
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=44.73 E-value=13 Score=17.76 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 876669999999999719999999999999999
Q gi|254780496|r 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFN 34 (114)
Q Consensus 2 ~~~mtK~eli~~ia~~~g~s~~~~~~~v~~~~~ 34 (114)
+|.|+=.|||+.+.+.-.||.++++.+++.+++
T Consensus 1 ~~~M~~~e~I~k~~~g~~Lt~eE~~~~~~~i~~ 33 (436)
T 3h5q_A 1 SNAMRMIDIIEKKRDGHTLTTEEINFFIGGYVK 33 (436)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 997689999999877999799999999999987
No 15
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=42.14 E-value=20 Score=16.70 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCCHHHH---------------HHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 76669999---------------999999719999999999999999
Q gi|254780496|r 3 KTITRSDL---------------VKSISKEFGLSRKDSTRFVTTLFN 34 (114)
Q Consensus 3 ~~mtK~el---------------i~~ia~~~g~s~~~~~~~v~~~~~ 34 (114)
++||+.|+ +.+||.-+|.+..+|..++..|-.
T Consensus 55 ~SMT~~Er~~p~~~~~~~~~~sR~~RIA~GSG~~~~eVn~Llkqf~~ 101 (109)
T 1qb2_A 55 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTK 101 (109)
T ss_dssp TTSCHHHHHSTTTHHHHHHSTHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHCCHHHCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 31689761684145550457899999981069899999999999999
No 16
>1z67_A Hypothetical protein S4005; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.45A {Shigella flexneri 2a str} SCOP: a.259.1.1
Probab=40.17 E-value=21 Score=16.51 Aligned_cols=40 Identities=10% Similarity=0.315 Sum_probs=35.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999997199999999999999999999975599600
Q gi|254780496|r 8 SDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIK 47 (114)
Q Consensus 8 ~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~ 47 (114)
.|.++.+|.++|++..++...+..++=.+.+.+.-++++.
T Consensus 75 ~~~l~~lA~~~Gl~~~~~~~~La~~LP~~VD~lTP~G~lp 114 (135)
T 1z67_A 75 TNAVSDLGQKLGVDTSTASSLLAEQLPKIIDALSPQGEVS 114 (135)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCTTSCC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7999999999890999999999999779997019899899
No 17
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=35.38 E-value=17 Score=17.15 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHH
Q ss_conf 9876669999999999-71999999999999999999
Q gi|254780496|r 1 MSKTITRSDLVKSISK-EFGLSRKDSTRFVTTLFNEI 36 (114)
Q Consensus 1 m~~~mtK~eli~~ia~-~~g~s~~~~~~~v~~~~~~i 36 (114)
|.+-||-.||+..... ++|++..+...++..++.-|
T Consensus 29 ~rKP~TT~eLl~Kfk~k~t~l~~~e~v~~~a~ILkki 65 (82)
T 1nha_A 29 TRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 65 (82)
T ss_dssp HHSCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 7289739999999886246788499999999999970
No 18
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=33.77 E-value=27 Score=15.89 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6699999999997199999999999999999999
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICD 38 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~ 38 (114)
..-.++|++|-++||.+..++...+...-.-+..
T Consensus 7 ~~s~elik~LR~~Tga~~~dcK~AL~e~~gD~ek 40 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQ 40 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHH
T ss_conf 1309999999999798899999999992899999
No 19
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.49 E-value=31 Score=15.51 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 66999999999971-99999999999999999999975599600004169
Q gi|254780496|r 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFAT 53 (114)
Q Consensus 5 mtK~eli~~ia~~~-g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGt 53 (114)
|++.|.++.+.+.. -+.+.......+..++.+.+.|.+.++|.+-|.|.
T Consensus 1 ~s~~d~ld~i~~~i~~l~~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~ 50 (180)
T 1jeo_A 1 MSKLEELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGVGR 50 (180)
T ss_dssp ---CHHHHHHHHHHHGGGHHHHCHHHHHHHHHHHHHHHHCSSEEEECCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 98335899999999999998734488999999999997899499997779
No 20
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=27.84 E-value=34 Score=15.27 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 669999999999719999999999999999
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFN 34 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~ 34 (114)
|+-+|||+++.+...||.++++.+++.+++
T Consensus 2 ~~~~eiI~k~~~g~~Ls~eE~~~~~~~i~~ 31 (440)
T 2tpt_A 2 FLAQEIIRKKRDGHALSDEEIRFFINGIRD 31 (440)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 878999999977999699999999999987
No 21
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=27.63 E-value=34 Score=15.25 Aligned_cols=30 Identities=7% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 669999999999719999999999999999
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFN 34 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~ 34 (114)
|+-.++++++...-.|+.+++..+++.+++
T Consensus 1 M~~~~~i~k~~~g~~Lt~eEa~~~~~~il~ 30 (345)
T 1o17_A 1 MNINEILKKLINKSDLEINEAEELAKAIIR 30 (345)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 988999999866999799999999999987
No 22
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=26.11 E-value=26 Score=15.97 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 99999999999997559960000416
Q gi|254780496|r 27 RFVTTLFNEICDSAVRGEAIKISSFA 52 (114)
Q Consensus 27 ~~v~~~~~~i~~~L~~g~~V~l~gfG 52 (114)
.-++...+.|.+++.+|++|.+-|-|
T Consensus 48 ~~I~~aa~~i~~~~~~ggrI~~~GnG 73 (212)
T 2i2w_A 48 HAIQRAAVLLADSFKAGGKVLSCGNG 73 (212)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEST
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99999999999999879979999689
No 23
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus HB8}
Probab=25.91 E-value=26 Score=15.95 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999997199-999999999999999999975599600
Q gi|254780496|r 7 RSDLVKSISKEFGL-SRKDSTRFVTTLFNEICDSAVRGEAIK 47 (114)
Q Consensus 7 K~eli~~ia~~~g~-s~~~~~~~v~~~~~~i~~~L~~g~~V~ 47 (114)
-.++++.|.++.|+ +..++..++.+.+..+.+.|..++...
T Consensus 16 ~~~fL~~V~~~~gl~d~~~A~~~~raVL~~Lr~RL~~~ea~~ 57 (145)
T 2ysk_A 16 THAWLKAIMEELGTEDRHKAYLALRAVLHALRDRLTVEEVAQ 57 (145)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999999999981899889999999999999998778778999
No 24
>3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=25.07 E-value=38 Score=14.96 Aligned_cols=29 Identities=3% Similarity=0.057 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 99999999999999975599600004169
Q gi|254780496|r 25 STRFVTTLFNEICDSAVRGEAIKISSFAT 53 (114)
Q Consensus 25 ~~~~v~~~~~~i~~~L~~g~~V~l~gfGt 53 (114)
....+....+.|.+++.++++|.+-|.|.
T Consensus 24 ~~~~i~~aa~~ia~~i~~~~rI~i~G~G~ 52 (243)
T 3cvj_A 24 QEQAIIKGAHLVSEAVMNGGRFYVFGSGH 52 (243)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99999999999999997599899992784
No 25
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=24.91 E-value=38 Score=14.94 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6699999999997199999999999999
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTL 32 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~ 32 (114)
|+.-+||+.|-++||.+-.++++.+..-
T Consensus 1 ms~~~lvk~LR~~Tgag~~dcKkAL~e~ 28 (196)
T 1aip_C 1 MSQMELIKKLREATGAGMMDVKRALEDA 28 (196)
T ss_dssp -CHHHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 9747999999998797999999999984
No 26
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=23.82 E-value=40 Score=14.81 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=26.0
Q ss_pred CCCCHHHH---------------HHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 76669999---------------999999719999999999999999
Q gi|254780496|r 3 KTITRSDL---------------VKSISKEFGLSRKDSTRFVTTLFN 34 (114)
Q Consensus 3 ~~mtK~el---------------i~~ia~~~g~s~~~~~~~v~~~~~ 34 (114)
++||..|+ +.+||.-+|.+..+|..++..|-.
T Consensus 68 ~SMT~~Er~~p~~~~~~~~~~SR~~RIA~GSG~~~~eVn~Llkqf~~ 114 (129)
T 1mfq_C 68 DSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTK 114 (129)
T ss_dssp TTSCHHHHTCTTHHHHHHHCTHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHCCHHHCCCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 30678660686124430437799999982169899999999999999
No 27
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Probab=21.94 E-value=43 Score=14.59 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 66999999999971999999999999999
Q gi|254780496|r 5 ITRSDLVKSISKEFGLSRKDSTRFVTTLF 33 (114)
Q Consensus 5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~ 33 (114)
|+-.|+|+++.+.-.||.+++..+++.++
T Consensus 1 m~~~~~I~k~~~g~~Ls~eE~~~~~~~i~ 29 (423)
T 2dsj_A 1 MNPVAFIREKREGKKHRREDLEAFLLGYL 29 (423)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 98899999997799969999999999998
No 28
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=21.92 E-value=43 Score=14.58 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8766699999999997199999999999999999999
Q gi|254780496|r 2 SKTITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICD 38 (114)
Q Consensus 2 ~~~mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~ 38 (114)
....+-.+|+..++++.+.....+..-|..|+..+.+
T Consensus 53 dG~~tv~eI~~~L~~ey~~~~~~~~~Dv~~fl~~L~~ 89 (95)
T 3g2b_A 53 DGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQ 89 (95)
T ss_dssp CSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 5997799999999998689878999999999999998
Done!