HHSEARCH alignment of GI: 254780496 and SCOP domain: d1mula_

Alignment
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=99.93  E-value=4.4e-26  Score=178.59  Aligned_cols=90  Identities=28%  Similarity=0.506  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+|||+.||+++|+++.+++.+|++|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|+
T Consensus         1 M~K~eli~~ia~~~~ltk~~~~~~v~~~~~~i~~~L~~~~~v~l~gfG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~Fk   80 (90)
T d1mula_           1 MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFV   80 (90)
T ss_dssp             CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECC--------------CCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCEEEECCCCCCEEEECCCCCEEEE
T ss_conf             97899999999704969999999999999999999972997286572489998537611188899988996486417997


Q ss_pred             CCHHHHHHHH
Q ss_conf             6989999973
Q gi|254780496|r   85 ASSILKKRIM   94 (114)
Q Consensus        85 psk~Lk~~in   94 (114)
                      ||+.||+.|.
T Consensus        81 psk~LK~~vk   90 (90)
T d1mula_          81 SGKALKDAVK   90 (90)
T ss_dssp             ECHHHHHHHC
T ss_pred             ECHHHHHHHC
T ss_conf             2899998629


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Escherichia coli [TaxId: 562]