HHSEARCH alignment of GI: 254780496 and SCOP domain: d1p71a_

Alignment
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=99.94  E-value=9.4e-27  Score=182.71  Aligned_cols=92  Identities=21%  Similarity=0.520  Sum_probs=90.6

Q ss_pred             CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCEEEEC
Q ss_conf             66999999999971999999999999999999999755996000041699985026764306889888995688537761
Q gi|254780496|r    5 ITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRVGRNLQTNQEVKIDPRRVVVFK   84 (114)
Q Consensus         5 mtK~eli~~ia~~~g~s~~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~R~~rNP~Tge~i~ip~k~~v~Fk   84 (114)
                      |||+|||+.||+++|+++.+++.++++|+++|.++|..|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+
T Consensus         1 M~K~eli~~ia~~~~ls~~~~~~~v~~~~~~i~~~L~~~~~V~l~~fG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~Fk   80 (94)
T d1p71a_           1 MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFS   80 (94)
T ss_dssp             CBHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEEEECCCCEEECCCCCCEEEECCCCEEEEE
T ss_conf             97899999999855969999999999999999999845997999343789888236630488999988986287208995


Q ss_pred             CCHHHHHHHHHH
Q ss_conf             698999997311
Q gi|254780496|r   85 ASSILKKRIMDD   96 (114)
Q Consensus        85 psk~Lk~~in~~   96 (114)
                      ||+.|++.||..
T Consensus        81 ~sk~Lk~~vN~~   92 (94)
T d1p71a_          81 AGKLFREKVAPP   92 (94)
T ss_dssp             ECHHHHHHHSCC
T ss_pred             CCHHHHHHHCCC
T ss_conf             599999976778


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Anabaena sp. [TaxId: 1167]